AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0839560


Find 242 sgRNAs with CRISPR-Local

Find 457 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-GE

Chromosome Type Strat End Strand Name
chr5_4 gene 14600342 14608506 14600342 ID=Msa0839560;Name=Msa0839560
chr5_4 mRNA 14600342 14608506 14600342 ID=Msa0839560-mRNA-1;Parent=Msa0839560;Name=Msa0839560-mRNA-1;_AED=0.14;_eAED=0.15;_QI=0|0.82|0.79|0.95|0.86|0.91|24|309|1271
chr5_4 exon 14600342 14600843 14600342 ID=Msa0839560-mRNA-1:exon:6417;Parent=Msa0839560-mRNA-1
chr5_4 exon 14600985 14601199 14600985 ID=Msa0839560-mRNA-1:exon:6416;Parent=Msa0839560-mRNA-1
chr5_4 exon 14601298 14601495 14601298 ID=Msa0839560-mRNA-1:exon:6415;Parent=Msa0839560-mRNA-1
chr5_4 exon 14601588 14601683 14601588 ID=Msa0839560-mRNA-1:exon:6414;Parent=Msa0839560-mRNA-1
chr5_4 exon 14601857 14602039 14601857 ID=Msa0839560-mRNA-1:exon:6413;Parent=Msa0839560-mRNA-1
chr5_4 exon 14602199 14602383 14602199 ID=Msa0839560-mRNA-1:exon:6412;Parent=Msa0839560-mRNA-1
chr5_4 exon 14602483 14602609 14602483 ID=Msa0839560-mRNA-1:exon:6411;Parent=Msa0839560-mRNA-1
chr5_4 exon 14602707 14602901 14602707 ID=Msa0839560-mRNA-1:exon:6410;Parent=Msa0839560-mRNA-1
chr5_4 exon 14602998 14603138 14602998 ID=Msa0839560-mRNA-1:exon:6409;Parent=Msa0839560-mRNA-1
chr5_4 exon 14603240 14603344 14603240 ID=Msa0839560-mRNA-1:exon:6408;Parent=Msa0839560-mRNA-1
chr5_4 exon 14603438 14603602 14603438 ID=Msa0839560-mRNA-1:exon:6407;Parent=Msa0839560-mRNA-1
chr5_4 exon 14603703 14603903 14603703 ID=Msa0839560-mRNA-1:exon:6406;Parent=Msa0839560-mRNA-1
chr5_4 exon 14604036 14604182 14604036 ID=Msa0839560-mRNA-1:exon:6405;Parent=Msa0839560-mRNA-1
chr5_4 exon 14604310 14604462 14604310 ID=Msa0839560-mRNA-1:exon:6404;Parent=Msa0839560-mRNA-1
chr5_4 exon 14604533 14604635 14604533 ID=Msa0839560-mRNA-1:exon:6403;Parent=Msa0839560-mRNA-1
chr5_4 exon 14604795 14604910 14604795 ID=Msa0839560-mRNA-1:exon:6402;Parent=Msa0839560-mRNA-1
chr5_4 exon 14605237 14605418 14605237 ID=Msa0839560-mRNA-1:exon:6401;Parent=Msa0839560-mRNA-1
chr5_4 exon 14605505 14605932 14605505 ID=Msa0839560-mRNA-1:exon:6400;Parent=Msa0839560-mRNA-1
chr5_4 exon 14606073 14606299 14606073 ID=Msa0839560-mRNA-1:exon:6399;Parent=Msa0839560-mRNA-1
chr5_4 exon 14606375 14606506 14606375 ID=Msa0839560-mRNA-1:exon:6398;Parent=Msa0839560-mRNA-1
chr5_4 exon 14606707 14606779 14606707 ID=Msa0839560-mRNA-1:exon:6397;Parent=Msa0839560-mRNA-1
chr5_4 exon 14607542 14607702 14607542 ID=Msa0839560-mRNA-1:exon:6396;Parent=Msa0839560-mRNA-1
chr5_4 exon 14608395 14608479 14608395 ID=Msa0839560-mRNA-1:exon:6395;Parent=Msa0839560-mRNA-1
chr5_4 exon 14608502 14608506 14608502 ID=Msa0839560-mRNA-1:exon:6394;Parent=Msa0839560-mRNA-1
chr5_4 CDS 14608502 14608506 14608502 ID=Msa0839560-mRNA-1:cds;Parent=Msa0839560-mRNA-1
chr5_4 CDS 14608395 14608479 14608395 ID=Msa0839560-mRNA-1:cds;Parent=Msa0839560-mRNA-1
chr5_4 CDS 14607542 14607702 14607542 ID=Msa0839560-mRNA-1:cds;Parent=Msa0839560-mRNA-1
chr5_4 CDS 14606707 14606779 14606707 ID=Msa0839560-mRNA-1:cds;Parent=Msa0839560-mRNA-1
chr5_4 CDS 14606375 14606506 14606375 ID=Msa0839560-mRNA-1:cds;Parent=Msa0839560-mRNA-1
chr5_4 CDS 14606073 14606299 14606073 ID=Msa0839560-mRNA-1:cds;Parent=Msa0839560-mRNA-1
chr5_4 CDS 14605505 14605932 14605505 ID=Msa0839560-mRNA-1:cds;Parent=Msa0839560-mRNA-1
chr5_4 CDS 14605237 14605418 14605237 ID=Msa0839560-mRNA-1:cds;Parent=Msa0839560-mRNA-1
chr5_4 CDS 14604795 14604910 14604795 ID=Msa0839560-mRNA-1:cds;Parent=Msa0839560-mRNA-1
chr5_4 CDS 14604533 14604635 14604533 ID=Msa0839560-mRNA-1:cds;Parent=Msa0839560-mRNA-1
chr5_4 CDS 14604310 14604462 14604310 ID=Msa0839560-mRNA-1:cds;Parent=Msa0839560-mRNA-1
chr5_4 CDS 14604036 14604182 14604036 ID=Msa0839560-mRNA-1:cds;Parent=Msa0839560-mRNA-1
chr5_4 CDS 14603703 14603903 14603703 ID=Msa0839560-mRNA-1:cds;Parent=Msa0839560-mRNA-1
chr5_4 CDS 14603438 14603602 14603438 ID=Msa0839560-mRNA-1:cds;Parent=Msa0839560-mRNA-1
chr5_4 CDS 14603240 14603344 14603240 ID=Msa0839560-mRNA-1:cds;Parent=Msa0839560-mRNA-1
chr5_4 CDS 14602998 14603138 14602998 ID=Msa0839560-mRNA-1:cds;Parent=Msa0839560-mRNA-1
chr5_4 CDS 14602707 14602901 14602707 ID=Msa0839560-mRNA-1:cds;Parent=Msa0839560-mRNA-1
chr5_4 CDS 14602483 14602609 14602483 ID=Msa0839560-mRNA-1:cds;Parent=Msa0839560-mRNA-1
chr5_4 CDS 14602199 14602383 14602199 ID=Msa0839560-mRNA-1:cds;Parent=Msa0839560-mRNA-1
chr5_4 CDS 14601857 14602039 14601857 ID=Msa0839560-mRNA-1:cds;Parent=Msa0839560-mRNA-1
chr5_4 CDS 14601588 14601683 14601588 ID=Msa0839560-mRNA-1:cds;Parent=Msa0839560-mRNA-1
chr5_4 CDS 14601298 14601495 14601298 ID=Msa0839560-mRNA-1:cds;Parent=Msa0839560-mRNA-1
chr5_4 CDS 14600985 14601199 14600985 ID=Msa0839560-mRNA-1:cds;Parent=Msa0839560-mRNA-1
chr5_4 CDS 14600651 14600843 14600651 ID=Msa0839560-mRNA-1:cds;Parent=Msa0839560-mRNA-1
chr5_4 three_prime_UTR 14600342 14600650 14600342 ID=Msa0839560-mRNA-1:three_prime_utr;Parent=Msa0839560-mRNA-1
Gene Sequence

>Msa0839560

ATGAATTGTGAAACAAGAATCTTGTTTCTCTGTGTTTTCTTTCTTTCATGTCAATCTTTATTTTTGAGTGAAGAAGAAGAAAGTGTAAAAAATATGATATTTGATATGCCACCATCCGGCGCCCAAAGTGTGAGGACAAACAGATCTTCATTTGGTTCTATCAATGGTAGTGAGGGTACACCTTTACATAGCTATGCTACTGTTAGCAATGGCGATGGATATGACAGCGATGGCTCCAATTTCACACCAGCCACACCAACAACTCTATCAACGGCTGTTCCAGCAGAACTCGCTGGAGCAGCACCTTTGATTGACAGATTTCAGGTGGAAGGTTTTTTAAAGTTGATGCAAAAACAAATTCACTCTGCCGGGAAGCGAGGATTTTTTTCTAAACGATCCGTGGGACCCCAAGTTCGAGAGAAACTTACAATCGAAGACATGCTTTGCTTCCAAAAGGATCCAATACCAACATCATTGCTTAAGCTGAATGGCGATTTGGCAAGCCGGGCAACAAAGTTGTTCCAAATGATTTTGAAGTATATGGGTGTTGATTCGTCTTCACTAAGCTTAGAGGACCGGGTTGAGCTTGTAGGTAAACTATACAAGCAAAGTTTGAAGCGTTCGGAACTCCGCGATGAACTTTTTGTGCAGATATCAAAACAAACAAGAAACAATCCAGAGAGGGAATACTTGATGAAATCATGGGAGCTAATGTATTTATGTGTGTCGTGCATGCCTCCAAGCAAAGACATTGGAGGATATCTGTCTGAATATACCCATAACGTGGCGCATGGCGTGGCTGTTGATTCTGGGATCCGAGGTGTTGCATTGAACACTTTAAATGCTTTGAAGCACTCTCTCAAGGCTGGTCCTAGGCATATAATACCCGGACCTGCTGAGATCGAAGCTCGGATGACTGGGAAAAAGCTCACAACTATAGTCTTCTTTCTGGATGAAACATTTGAAGAAATTACATATGACATGTCAACAACCGTAGCGGATGCTGTCGAGGAACTCGCAGGAATCATTAAACTGTCAACATACTCTAGCTTTGGCTTGTACGAATGCCGCAAAGCTGTCACAAGCGCTAAATCATCTGATTCTGGCAATGAGGAGTACATTGGTTTGGACGACAATAAACATATCGGGGATCTATTAGCGGAATTTAAGGCCGTAAAAGAACGAAGTAAGGGAGAAGTTTTGCACTGCAAACTGGTCTTCAAGAAAAAGTTATTTCGTGAATCGGATGAAGCTGTGACAGATCCTATGTTTTGGCAGTTGTCCTACGTACAATTGCAGCATGATTATATTTTGGGTAATTATCCCATTGGAAGGGAAGATGCATCAAAGCTTTCTGCATTGCAAATCTTGGCTGAGATTGGATTTGTTAGAAGACCCGAATCATGCCCTGATTGGAATTCCTTTCTCGAGCGATTTCTTCCCAGGCAAATAGCAATGACTAGAGCTAGACGCGAATGGGAGTTGGACATTCTTTCTTGCTATCATTCACTGGAGAATGTCACAAAAGATGATGCAAGACAACAGTTTCTGCATATAATAAGAACACTTCCTTATGGCTTTTCTGTATTTTTTAATGTTCGCAAAATTGATGATCCTATTGGACTCCTACCTGGACGAATAATACTAGCAATTAACAAGAGAGGGATTCATTTTTTTCGTCCCATTCCAAAGGAATATTTGCACTCAGCTGAATTGAGAGACATAATGCAATTTGGAAGCAGTAACACTGCTGTATTTTTTAAAATGCGAGTTGCCGGTGTTCTTCACATATTCCAGTTTGAAACCAAGCAGGGAGAAGAAATTTGTGTAGCCCTTCAGACACACATAAATGATGTAATGCTGCGCCGATATTCCAAAACACGATCTTCTCCTACAGGTTCTTTGGATAAAGAAATTTCTACTGAATTTAAGTCTCCGAATATGGAATCGTATGAGAAACGTGTTCAAGATTTAACAAAAGCTGTTGAAGATTCTCAAAGGAAGGCGGATCAATTGATGGAAAAATTGCACGAGAAGCAAATACAAGAAGAGGAGACTCTCCAAGAATTAGAAGGCTTGAAAGAATCTTTAGAAACTTCCAAGAATAGTCTTGCAGAAGTTACGAATGACCGTGATAGGCTTACATCACTATGCAGTGAAAAAGATAATGAACTTCAGGCTAAAATGGTAGAAAAAAGGAGCTTGGAAGCAAAGATAGCCAAGTTGAATAGTTTGATGATAGAGGGGATTACCAACAAGGACTCTATTGGAGCTAACGACCGAGCGTTGCAAAAGCTTGAAGATGACTTGAGACTTTGTAGAGATGAGCTTATGGCAGCTGAAGAGACCATCAAATGCTTGACAAATGAGAAGTTAGTTTTGAGACAAAAGATATCTGAGCTTGAGAAGAAGAATACTGAAGAGATTAATTATGTTCAACGAAAACTTGAACAAGAACGCAAAGCTCTGAACTCTCAAGTACATGGCCTTGAAAGAAAACTAGATGTGCTTAAACAAGAATTGGTTATGGCTGAATCTACACTTTTGGCGAAGGACTCTGAATTGGCTGTGTTGAGGAACAATTTAAAAGAACTAGAAGATTTGAGAGAAATGAAAGAGGACATTGACAGAAAGAATGAACAAACAGCTTCCATACTGAGGATGCAAGCGGCACAACTAGCTGACATGGAATCACTTTATAAGGAGGAGCAGGTTCTCAGAAAGCGATATTTCAATACCATAGAAGATATGAAAGGAAAAATACGAGTTTACTGTCGTCTAAGACCCCTTGGTGAAAAAGAGATTGCCGTGAATGAAAGAAAAGTTCTTACTTTTGTAGACGAGTTTACTGTTGAGCATCCATGGAAAGATGATAAAGCAAAGCAACACATATATGATCGCGTGTTTAACGGCAATGCAACTCAAGAAGAATACTTGGTGCAATCTGCTGTAGACGGTTATAATGTTTGCGTATTTGCCTATGGTCAAACTGGCTCTGGAAAGACGTTTACAATATATGGATCCGAAAACAATCCTGGCCTTACGCCACGTGCTACTACAGAGCTTTTTAGAATTTTAAGGAGAGATGGTAACAAGTTTTCTTTTTCCTTGAAGGCGTACATGTTGGAATTATATCAAGATACACTTGTAGATCTCTTGTTGCCGAAGAATGCAAAGCGATTAAAATTGGAGATTAAGAAGGACTCAAAGGGAATGGTAACGGTAGAAAACGCAACCACTGTGTCGATTTCCACCATGGAGGAATTGAATAGAATAATACAAAGGGGTTCGGAACGGCGGCATACAGCAGGGACACAAATGAATGAAGAAAGCTCAAGATCTCATCTTATACTATCAGTTGTAATCGAAAGTGTCAACCTTCAAAGCCAATCAACTGCAAGAGGAAAGCTGAGTTTTGTGGATCTTGCTGGCTCTGAAAGAATTAAAAAGTCAGGCTCTGAGGGTAGTCAATTGAAAGAAGCTCAAAGTATAAACAAATCATTATCAGCACTTGGAGATGTTATTAGTGCTTTATCTTCAGGGGGTCAACACATACCTTACAGAAATCACAAGTTAACTATGTTGATGAGTGATTCACTTGGAGGCAACGCCAAAACTCTCATGTATGCGTCGCGTGTGAGGTCAATTGTGAATGATCCAAGTAAAAACATATCTTCGAAAGAGATCGCTCGACTGAAGAAATTGGTTGCTTATTGGAAGGAGCAAGCAGGTAGGAAAGGGGAGGATGAAGATTTAGAAGAAATTCAAGATAAACGACCAACTAAAGAGCGGAGCGATGGCCGCCATTCAATGTAG

Protein sequence

>Msa0839560

MNCETRILFLCVFFLSCQSLFLSEEEESVKNMIFDMPPSGAQSVRTNRSSFGSINGSEGTPLHSYATVSNGDGYDSDGSNFTPATPTTLSTAVPAELAGAAPLIDRFQVEGFLKLMQKQIHSAGKRGFFSKRSVGPQVREKLTIEDMLCFQKDPIPTSLLKLNGDLASRATKLFQMILKYMGVDSSSLSLEDRVELVGKLYKQSLKRSELRDELFVQISKQTRNNPEREYLMKSWELMYLCVSCMPPSKDIGGYLSEYTHNVAHGVAVDSGIRGVALNTLNALKHSLKAGPRHIIPGPAEIEARMTGKKLTTIVFFLDETFEEITYDMSTTVADAVEELAGIIKLSTYSSFGLYECRKAVTSAKSSDSGNEEYIGLDDNKHIGDLLAEFKAVKERSKGEVLHCKLVFKKKLFRESDEAVTDPMFWQLSYVQLQHDYILGNYPIGREDASKLSALQILAEIGFVRRPESCPDWNSFLERFLPRQIAMTRARREWELDILSCYHSLENVTKDDARQQFLHIIRTLPYGFSVFFNVRKIDDPIGLLPGRIILAINKRGIHFFRPIPKEYLHSAELRDIMQFGSSNTAVFFKMRVAGVLHIFQFETKQGEEICVALQTHINDVMLRRYSKTRSSPTGSLDKEISTEFKSPNMESYEKRVQDLTKAVEDSQRKADQLMEKLHEKQIQEEETLQELEGLKESLETSKNSLAEVTNDRDRLTSLCSEKDNELQAKMVEKRSLEAKIAKLNSLMIEGITNKDSIGANDRALQKLEDDLRLCRDELMAAEETIKCLTNEKLVLRQKISELEKKNTEEINYVQRKLEQERKALNSQVHGLERKLDVLKQELVMAESTLLAKDSELAVLRNNLKELEDLREMKEDIDRKNEQTASILRMQAAQLADMESLYKEEQVLRKRYFNTIEDMKGKIRVYCRLRPLGEKEIAVNERKVLTFVDEFTVEHPWKDDKAKQHIYDRVFNGNATQEEYLVQSAVDGYNVCVFAYGQTGSGKTFTIYGSENNPGLTPRATTELFRILRRDGNKFSFSLKAYMLELYQDTLVDLLLPKNAKRLKLEIKKDSKGMVTVENATTVSISTMEELNRIIQRGSERRHTAGTQMNEESSRSHLILSVVIESVNLQSQSTARGKLSFVDLAGSERIKKSGSEGSQLKEAQSINKSLSALGDVISALSSGGQHIPYRNHKLTMLMSDSLGGNAKTLMYASRVRSIVNDPSKNISSKEIARLKKLVAYWKEQAGRKGEDEDLEEIQDKRPTKERSDGRHSM*