Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0302820 | XP_003597460.1 | 94.118 | 425 | 12 | 3 | 1 | 425 | 1 | 412 | 0.0 | 813 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0302820 | sp|Q9C690|BH122_ARATH | 37.589 | 423 | 196 | 13 | 5 | 417 | 12 | 376 | 1.22e-66 | 220 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0302820 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020930 | Msa0302820 | 0.815701 | 8.077803e-52 | -8.615850e-47 |
| Msa0048000 | Msa0302820 | 0.814579 | 1.433865e-51 | -8.615850e-47 |
| Msa0068680 | Msa0302820 | 0.802790 | 4.745399e-49 | -8.615850e-47 |
| Msa0159930 | Msa0302820 | 0.816892 | 4.375732e-52 | -8.615850e-47 |
| Msa0220580 | Msa0302820 | 0.813228 | 2.847027e-51 | -8.615850e-47 |
| Msa0260810 | Msa0302820 | 0.810359 | 1.199090e-50 | -8.615850e-47 |
| Msa0264780 | Msa0302820 | 0.815550 | 8.728841e-52 | -8.615850e-47 |
| Msa0266000 | Msa0302820 | -0.803502 | 3.381035e-49 | -8.615850e-47 |
| Msa0302820 | Msa0333720 | -0.809808 | 1.575541e-50 | -8.615850e-47 |
| Msa0302820 | Msa0336250 | 0.814822 | 1.266687e-51 | -8.615850e-47 |
| Msa0302820 | Msa0376590 | 0.803961 | 2.715502e-49 | -8.615850e-47 |
| Msa0302820 | Msa0411160 | 0.812953 | 3.270517e-51 | -8.615850e-47 |
| Msa0302820 | Msa0411190 | 0.816393 | 5.660932e-52 | -8.615850e-47 |
| Msa0302820 | Msa0436370 | 0.806488 | 8.027649e-50 | -8.615850e-47 |
| Msa0302820 | Msa0448550 | -0.802656 | 5.059250e-49 | -8.615850e-47 |
| Msa0302820 | Msa0484780 | 0.801829 | 7.487190e-49 | -8.615850e-47 |
| Msa0302820 | Msa0516370 | 0.810126 | 1.345804e-50 | -8.615850e-47 |
| Msa0302820 | Msa0572480 | 0.800767 | 1.235217e-48 | -8.615850e-47 |
| Msa0302820 | Msa0744040 | 0.816869 | 4.426842e-52 | -8.615850e-47 |
| Msa0302820 | Msa0933230 | 0.800763 | 1.237412e-48 | -8.615850e-47 |
| Msa0302820 | Msa0935670 | 0.808602 | 2.857165e-50 | -8.615850e-47 |
| Msa0302820 | Msa0971090 | 0.802840 | 4.635854e-49 | -8.615850e-47 |
| Msa0302820 | Msa1041730 | 0.853883 | 1.780019e-61 | -8.615850e-47 |
| Msa0302820 | Msa1045200 | 0.815202 | 1.042928e-51 | -8.615850e-47 |
| Msa0302820 | Msa1080160 | 0.850898 | 1.260676e-60 | -8.615850e-47 |
| Msa0302820 | Msa1125080 | 0.844805 | 6.022630e-59 | -8.615850e-47 |
| Msa0302820 | Msa1167220 | 0.846106 | 2.675382e-59 | -8.615850e-47 |
| Msa0302820 | Msa1379850 | 0.808550 | 2.931281e-50 | -8.615850e-47 |
| Msa0302820 | Msa1404540 | 0.806798 | 6.905185e-50 | -8.615850e-47 |
| Msa0302820 | Msa1431060 | 0.804901 | 1.728965e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0302820 | MtrunA17_Chr2g0329041 | 93.882 | 425 | 12 | 4 | 1 | 425 | 1 | 411 | 0.0 | 805 |
| Msa0302820 | MtrunA17_Chr4g0032951 | 51.502 | 466 | 150 | 16 | 1 | 423 | 1 | 433 | 3.35e-144 | 417 |
| Msa0302820 | MtrunA17_Chr1g0174271 | 46.809 | 329 | 140 | 9 | 114 | 421 | 60 | 374 | 3.43e-77 | 244 |
| Msa0302820 | MtrunA17_Chr3g0087771 | 36.195 | 431 | 217 | 14 | 3 | 423 | 18 | 400 | 1.64e-57 | 194 |
| Msa0302820 | MtrunA17_Chr7g0258181 | 43.529 | 255 | 119 | 5 | 170 | 421 | 87 | 319 | 4.55e-48 | 167 |
| Msa0302820 | MtrunA17_Chr8g0351881 | 35.252 | 417 | 203 | 13 | 8 | 417 | 32 | 388 | 2.12e-46 | 164 |
| Msa0302820 | MtrunA17_Chr1g0213791 | 61.404 | 114 | 39 | 2 | 310 | 421 | 231 | 341 | 4.64e-36 | 135 |
| Msa0302820 | MtrunA17_Chr4g0014771 | 70.115 | 87 | 24 | 1 | 331 | 417 | 106 | 190 | 2.94e-34 | 126 |
| Msa0302820 | MtrunA17_Chr4g0074161 | 58.462 | 65 | 26 | 1 | 344 | 408 | 205 | 268 | 5.49e-16 | 79.3 |
| Msa0302820 | MtrunA17_Chr1g0152131 | 47.674 | 86 | 37 | 1 | 323 | 408 | 246 | 323 | 6.56e-16 | 79.3 |
| Msa0302820 | MtrunA17_Chr8g0339091 | 51.282 | 78 | 31 | 1 | 338 | 408 | 277 | 354 | 2.48e-15 | 77.8 |
| Msa0302820 | MtrunA17_Chr3g0144641 | 56.061 | 66 | 29 | 0 | 343 | 408 | 189 | 254 | 3.19e-15 | 77.0 |
| Msa0302820 | MtrunA17_Chr7g0234761 | 37.097 | 124 | 69 | 2 | 286 | 408 | 265 | 380 | 4.02e-15 | 77.4 |
| Msa0302820 | MtrunA17_Chr3g0131771 | 56.061 | 66 | 29 | 0 | 343 | 408 | 145 | 210 | 4.18e-15 | 75.9 |
| Msa0302820 | MtrunA17_Chr1g0190731 | 55.385 | 65 | 28 | 1 | 344 | 408 | 192 | 255 | 1.21e-14 | 75.1 |
| Msa0302820 | MtrunA17_Chr8g0363921 | 33.333 | 177 | 101 | 5 | 235 | 408 | 52 | 214 | 1.25e-14 | 73.9 |
| Msa0302820 | MtrunA17_Chr8g0365941 | 56.250 | 64 | 28 | 0 | 345 | 408 | 305 | 368 | 1.78e-14 | 75.1 |
| Msa0302820 | MtrunA17_Chr4g0035101 | 54.688 | 64 | 29 | 0 | 345 | 408 | 143 | 206 | 2.38e-14 | 73.9 |
| Msa0302820 | MtrunA17_Chr5g0421111 | 48.052 | 77 | 32 | 1 | 332 | 408 | 360 | 428 | 3.07e-14 | 74.7 |
| Msa0302820 | MtrunA17_Chr8g0385911 | 51.515 | 66 | 32 | 0 | 343 | 408 | 143 | 208 | 1.81e-13 | 71.2 |
| Msa0302820 | MtrunA17_Chr5g0415291 | 50.000 | 66 | 33 | 0 | 343 | 408 | 110 | 175 | 1.07e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0302820 | AT1G51140.1 | 37.589 | 423 | 196 | 13 | 5 | 417 | 12 | 376 | 1.24e-67 | 220 |
| Msa0302820 | AT2G42280.1 | 37.296 | 429 | 172 | 14 | 11 | 423 | 10 | 357 | 2.39e-66 | 216 |
| Msa0302820 | AT2G42280.3 | 37.561 | 410 | 159 | 14 | 11 | 404 | 10 | 338 | 4.68e-61 | 202 |
| Msa0302820 | AT1G35460.1 | 68.966 | 87 | 27 | 0 | 337 | 423 | 173 | 259 | 3.17e-37 | 136 |
| Msa0302820 | AT4G09180.1 | 62.136 | 103 | 39 | 0 | 321 | 423 | 160 | 262 | 4.21e-37 | 136 |
| Msa0302820 | AT2G43140.1 | 61.538 | 104 | 39 | 1 | 315 | 417 | 103 | 206 | 3.20e-36 | 132 |
| Msa0302820 | AT2G43140.2 | 38.281 | 256 | 109 | 10 | 177 | 417 | 82 | 303 | 1.62e-34 | 130 |
| Msa0302820 | AT2G42280.2 | 31.522 | 368 | 155 | 14 | 11 | 362 | 10 | 296 | 2.17e-31 | 122 |
| Msa0302820 | AT1G35460.2 | 80.851 | 47 | 9 | 0 | 337 | 383 | 173 | 219 | 8.45e-21 | 90.9 |
| Msa0302820 | AT2G24260.2 | 60.000 | 65 | 25 | 1 | 344 | 408 | 34 | 97 | 1.23e-16 | 79.7 |
| Msa0302820 | AT2G24260.1 | 60.000 | 65 | 25 | 1 | 344 | 408 | 137 | 200 | 3.51e-16 | 79.7 |
| Msa0302820 | AT4G34530.1 | 50.000 | 86 | 41 | 1 | 323 | 408 | 152 | 235 | 5.20e-16 | 79.3 |
| Msa0302820 | AT4G30980.1 | 58.462 | 65 | 26 | 1 | 344 | 408 | 129 | 192 | 7.19e-16 | 78.6 |
| Msa0302820 | AT4G30980.2 | 58.462 | 65 | 26 | 1 | 344 | 408 | 177 | 240 | 1.07e-15 | 78.6 |
| Msa0302820 | AT5G50915.3 | 56.061 | 66 | 29 | 0 | 343 | 408 | 134 | 199 | 1.58e-15 | 76.6 |
| Msa0302820 | AT5G50915.4 | 56.061 | 66 | 29 | 0 | 343 | 408 | 134 | 199 | 1.58e-15 | 76.6 |
| Msa0302820 | AT5G50915.1 | 56.061 | 66 | 29 | 0 | 343 | 408 | 134 | 199 | 1.63e-15 | 77.0 |
| Msa0302820 | AT5G50915.2 | 56.061 | 66 | 29 | 0 | 343 | 408 | 134 | 199 | 1.63e-15 | 77.0 |
| Msa0302820 | AT1G10120.2 | 47.674 | 86 | 37 | 1 | 323 | 408 | 192 | 269 | 3.23e-15 | 77.0 |
| Msa0302820 | AT1G10120.1 | 47.674 | 86 | 37 | 1 | 323 | 408 | 192 | 269 | 3.23e-15 | 77.0 |
| Msa0302820 | AT1G68920.3 | 54.545 | 66 | 30 | 0 | 343 | 408 | 300 | 365 | 5.18e-15 | 77.4 |
| Msa0302820 | AT1G68920.1 | 54.545 | 66 | 30 | 0 | 343 | 408 | 301 | 366 | 5.34e-15 | 77.0 |
| Msa0302820 | AT1G68920.4 | 54.545 | 66 | 30 | 0 | 343 | 408 | 301 | 366 | 5.34e-15 | 77.0 |
| Msa0302820 | AT1G68920.2 | 54.545 | 66 | 30 | 0 | 343 | 408 | 301 | 366 | 5.34e-15 | 77.0 |
| Msa0302820 | AT5G58010.1 | 53.846 | 65 | 29 | 1 | 344 | 408 | 98 | 161 | 5.88e-15 | 75.5 |
| Msa0302820 | AT1G25330.1 | 54.688 | 64 | 29 | 0 | 345 | 408 | 104 | 167 | 7.76e-15 | 73.9 |
| Msa0302820 | AT3G07340.2 | 54.545 | 66 | 30 | 0 | 343 | 408 | 256 | 321 | 8.34e-15 | 76.3 |
| Msa0302820 | AT3G07340.1 | 54.545 | 66 | 30 | 0 | 343 | 408 | 256 | 321 | 8.76e-15 | 76.3 |
| Msa0302820 | AT1G26260.5 | 56.061 | 66 | 29 | 0 | 343 | 408 | 199 | 264 | 1.58e-14 | 75.1 |
| Msa0302820 | AT1G26260.4 | 56.061 | 66 | 29 | 0 | 343 | 408 | 221 | 286 | 1.88e-14 | 75.1 |
| Msa0302820 | AT1G26260.1 | 56.061 | 66 | 29 | 0 | 343 | 408 | 221 | 286 | 1.88e-14 | 75.1 |
| Msa0302820 | AT1G26260.6 | 56.061 | 66 | 29 | 0 | 343 | 408 | 221 | 286 | 1.88e-14 | 75.1 |
| Msa0302820 | AT1G26260.2 | 56.061 | 66 | 29 | 0 | 343 | 408 | 221 | 286 | 1.88e-14 | 75.1 |
| Msa0302820 | AT1G26260.3 | 56.061 | 66 | 29 | 0 | 343 | 408 | 170 | 235 | 2.17e-14 | 74.3 |
| Msa0302820 | AT5G48560.1 | 54.688 | 64 | 29 | 0 | 345 | 408 | 301 | 364 | 2.59e-14 | 75.1 |
| Msa0302820 | AT5G48560.2 | 54.688 | 64 | 29 | 0 | 345 | 408 | 301 | 364 | 2.89e-14 | 74.7 |
| Msa0302820 | AT3G23690.1 | 51.515 | 66 | 32 | 0 | 343 | 408 | 189 | 254 | 1.69e-13 | 72.0 |
| Msa0302820 | AT1G59640.1 | 53.125 | 64 | 30 | 0 | 345 | 408 | 136 | 199 | 1.88e-13 | 70.5 |
| Msa0302820 | AT1G18400.2 | 51.562 | 64 | 31 | 0 | 345 | 408 | 145 | 208 | 1.91e-13 | 70.1 |
| Msa0302820 | AT1G73830.2 | 51.562 | 64 | 31 | 0 | 345 | 408 | 147 | 210 | 2.00e-13 | 70.5 |
| Msa0302820 | AT1G73830.1 | 51.562 | 64 | 31 | 0 | 345 | 408 | 147 | 210 | 2.18e-13 | 70.5 |
| Msa0302820 | AT1G18400.1 | 51.562 | 64 | 31 | 0 | 345 | 408 | 145 | 208 | 3.89e-13 | 69.7 |
| Msa0302820 | AT2G18300.2 | 50.000 | 64 | 32 | 0 | 345 | 408 | 185 | 248 | 6.38e-13 | 70.1 |
| Msa0302820 | AT2G18300.1 | 50.000 | 64 | 32 | 0 | 345 | 408 | 185 | 248 | 6.77e-13 | 69.7 |
| Msa0302820 | AT1G59640.2 | 53.125 | 64 | 30 | 0 | 345 | 408 | 136 | 199 | 7.64e-13 | 69.7 |
| Msa0302820 | AT2G18300.3 | 50.000 | 64 | 32 | 0 | 345 | 408 | 185 | 248 | 9.02e-13 | 69.7 |
| Msa0302820 | AT4G36540.1 | 48.485 | 66 | 34 | 0 | 343 | 408 | 139 | 204 | 1.41e-12 | 68.6 |
| Msa0302820 | AT4G36540.2 | 48.485 | 66 | 34 | 0 | 343 | 408 | 139 | 204 | 1.42e-12 | 68.6 |
| Msa0302820 | AT2G42300.1 | 47.222 | 72 | 37 | 1 | 338 | 408 | 177 | 248 | 2.32e-12 | 68.2 |
| Msa0302820 | AT2G42300.4 | 47.222 | 72 | 37 | 1 | 338 | 408 | 177 | 248 | 2.87e-12 | 67.4 |
| Msa0302820 | AT5G62610.2 | 46.970 | 66 | 35 | 0 | 343 | 408 | 151 | 216 | 9.31e-12 | 65.9 |
| Msa0302820 | AT5G62610.1 | 46.970 | 66 | 35 | 0 | 343 | 408 | 151 | 216 | 9.31e-12 | 65.9 |
| Msa0302820 | AT3G57800.2 | 46.970 | 66 | 35 | 0 | 343 | 408 | 202 | 267 | 1.00e-11 | 66.6 |
Find 132 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTACATTGTCCTTAATTT+TGG | 0.127043 | 2_3:-59716210 | None:intergenic |
| TTGCACTTCTTCAACAATTA+TGG | 0.137219 | 2_3:+59719682 | Msa0302820:three_prime_UTR |
| TAGATCCAATTTAAGCATTT+AGG | 0.157031 | 2_3:+59719796 | Msa0302820:three_prime_UTR |
| TGTACAGATTTGTAATAATT+TGG | 0.171797 | 2_3:+59719543 | Msa0302820:three_prime_UTR |
| GCCATTTCAGATGAAGTATT+TGG | 0.195078 | 2_3:-59718631 | None:intergenic |
| TTCCTTGAAGTAGAAAATTT+TGG | 0.197445 | 2_3:-59718223 | None:intergenic |
| CGTACATATTTGTTATTATA+CGG | 0.199213 | 2_3:-59719852 | None:intergenic |
| ATAGATTTCATCACCAAATA+TGG | 0.204816 | 2_3:-59719821 | None:intergenic |
| CGCTCTGTTTCTGGACTTGA+TGG | 0.209227 | 2_3:-59717036 | None:intergenic |
| TCTCAAATTAACATTGAAAA+TGG | 0.226358 | 2_3:+59717468 | Msa0302820:CDS |
| ACCCTTTCGGCAATGCTTCT+TGG | 0.230259 | 2_3:-59718730 | None:intergenic |
| TGGGCCCTAAATGCTTAAAT+TGG | 0.246809 | 2_3:-59719801 | None:intergenic |
| AGATCCAATTTAAGCATTTA+GGG | 0.267087 | 2_3:+59719797 | Msa0302820:three_prime_UTR |
| CCAAATCAGAATGTTTCTTC+TGG | 0.278715 | 2_3:+59717336 | Msa0302820:CDS |
| TCAAGGTTTATTAACAGTTT+TGG | 0.288729 | 2_3:+59717066 | Msa0302820:CDS |
| AAGCATTTAGGGCCCATATT+TGG | 0.290567 | 2_3:+59719808 | Msa0302820:three_prime_UTR |
| CCCTTTCGGCAATGCTTCTT+GGG | 0.290663 | 2_3:-59718729 | None:intergenic |
| GGGGTGAATGAATTTATCTT+TGG | 0.299991 | 2_3:-59719621 | None:intergenic |
| TCAGTTTGTTTCCAAAATTA+AGG | 0.301115 | 2_3:+59716199 | Msa0302820:five_prime_UTR |
| GGACTTGAGATGGGAGAAAA+AGG | 0.309705 | 2_3:-59716152 | None:intergenic |
| CGTTTACGTTTCACATTGAA+TGG | 0.311932 | 2_3:+59719873 | Msa0302820:three_prime_UTR |
| TAAATCTTGATTCACAGATT+TGG | 0.317726 | 2_3:-59716248 | None:intergenic |
| CATGGTACCTTATCCATGTT+TGG | 0.320678 | 2_3:-59719153 | None:intergenic |
| TAAATTGGCTTCAGGTTAGA+AGG | 0.325551 | 2_3:+59719088 | Msa0302820:intron |
| TGCACTTCTTCAACAATTAT+GGG | 0.330535 | 2_3:+59719683 | Msa0302820:three_prime_UTR |
| TGGTTCAGAAGATGATTTAC+TGG | 0.334657 | 2_3:+59717086 | Msa0302820:CDS |
| CACCCACAAGTAAATTCTTC+AGG | 0.335781 | 2_3:+59716931 | Msa0302820:CDS |
| CCAGAAGAAACATTCTGATT+TGG | 0.339425 | 2_3:-59717336 | None:intergenic |
| ATGGTTGATTAGAATGAAAC+AGG | 0.344190 | 2_3:+59718565 | Msa0302820:intron |
| ATCAATAATCCATACCCTTT+CGG | 0.345815 | 2_3:-59718743 | None:intergenic |
| AATGAAGAAAATGAAGCTTT+TGG | 0.348594 | 2_3:+59718325 | Msa0302820:CDS |
| ATGAGAGGAATGGGAACTTT+AGG | 0.362085 | 2_3:+59718175 | Msa0302820:CDS |
| GAAGATGGAGATAAATTAGT+AGG | 0.368545 | 2_3:+59719658 | Msa0302820:three_prime_UTR |
| GCCAAATACTTCATCTGAAA+TGG | 0.370699 | 2_3:+59718630 | Msa0302820:CDS |
| AAGTCATGGTAACGAATATA+TGG | 0.373522 | 2_3:+59718351 | Msa0302820:CDS |
| AATGTTTCTTCTGGTTTAGA+TGG | 0.373647 | 2_3:+59717345 | Msa0302820:CDS |
| AGAAAGAAAGTTTAAAGTAA+TGG | 0.384370 | 2_3:-59716363 | None:intergenic |
| AGGACATTCTAATTCTCCTT+TGG | 0.389735 | 2_3:+59718591 | Msa0302820:CDS |
| TCTTCAATGTTGGTGGTGTT+TGG | 0.389909 | 2_3:+59720012 | Msa0302820:three_prime_UTR |
| CCCAAGAAGCATTGCCGAAA+GGG | 0.390620 | 2_3:+59718729 | Msa0302820:CDS |
| AATCAATCAAACTATTCATC+AGG | 0.391137 | 2_3:+59718253 | Msa0302820:CDS |
| AAAGCTTTGGTAGAAAACTA+TGG | 0.391199 | 2_3:+59716885 | Msa0302820:exon |
| TAACGAATATATGGATTATC+AGG | 0.397601 | 2_3:+59718360 | Msa0302820:CDS |
| AACTCTGTTCCTTCTTCTCA+TGG | 0.404649 | 2_3:+59717282 | Msa0302820:CDS |
| TATTTGGTGATGAAATCTAT+TGG | 0.406590 | 2_3:+59719824 | Msa0302820:three_prime_UTR |
| TTCGGCAATGCTTCTTGGGT+GGG | 0.408101 | 2_3:-59718725 | None:intergenic |
| AACAATTATGGGAACTAGCT+AGG | 0.422253 | 2_3:+59719694 | Msa0302820:three_prime_UTR |
| TGGATTATCAGGTTGATACT+TGG | 0.436048 | 2_3:+59718371 | Msa0302820:CDS |
| ACATAGAGGAACACATAAAC+AGG | 0.436219 | 2_3:+59716451 | Msa0302820:five_prime_UTR |
| ACAACAACAACAAGAAGATC+AGG | 0.441214 | 2_3:+59717179 | Msa0302820:CDS |
| TTCATCTGAAATGGCAGCTA+TGG | 0.443352 | 2_3:+59718639 | Msa0302820:CDS |
| CTAAAATTAGTGAGCGTATG+AGG | 0.443405 | 2_3:+59719112 | Msa0302820:CDS |
| ATATGATGAATTTGTATTTG+AGG | 0.445989 | 2_3:+59719957 | Msa0302820:three_prime_UTR |
| AATTAAGTTGAGTGTAATTG+AGG | 0.448480 | 2_3:+59719735 | Msa0302820:three_prime_UTR |
| TAACAAATAAAAGCTAATCT+AGG | 0.452171 | 2_3:-59719586 | None:intergenic |
| AGCAGCAACAACAACAATAA+CGG | 0.452797 | 2_3:+59719493 | Msa0302820:CDS |
| CATCTTCATTATGTACATCA+AGG | 0.461161 | 2_3:-59719642 | None:intergenic |
| ATGGTACCTTATCCATGTTT+GGG | 0.462347 | 2_3:-59719152 | None:intergenic |
| TATGTTAGTATGAGAGGAAT+GGG | 0.466243 | 2_3:+59718166 | Msa0302820:CDS |
| TATGAGGAAGCTACAAGATC+TGG | 0.475457 | 2_3:+59719128 | Msa0302820:CDS |
| ATCTTGATTCACAGATTTGG+TGG | 0.478032 | 2_3:-59716245 | None:intergenic |
| TTTCGGCAATGCTTCTTGGG+TGG | 0.478638 | 2_3:-59718726 | None:intergenic |
| TACGTTTCACATTGAATGGT+TGG | 0.486627 | 2_3:+59719877 | Msa0302820:three_prime_UTR |
| ACAACAAGAAGATCAGGGTT+TGG | 0.488825 | 2_3:+59717185 | Msa0302820:CDS |
| AACCTGAAGAATTTACTTGT+GGG | 0.489854 | 2_3:-59716933 | None:intergenic |
| TTTCCACCATGATTCTTCAC+TGG | 0.490723 | 2_3:-59717399 | None:intergenic |
| TAGATTTCATCACCAAATAT+GGG | 0.495278 | 2_3:-59719820 | None:intergenic |
| TCTGGTCCCAAACATGGATA+AGG | 0.497918 | 2_3:+59719146 | Msa0302820:CDS |
| GTTGTTGTTGCTGCTTGTGT+GGG | 0.500762 | 2_3:-59719485 | None:intergenic |
| ATTAAGTTGAGTGTAATTGA+GGG | 0.507443 | 2_3:+59719736 | Msa0302820:three_prime_UTR |
| GTGGGTGGCACAACCTCGCT+TGG | 0.508441 | 2_3:-59718707 | None:intergenic |
| CTTGATGTACATAATGAAGA+TGG | 0.510561 | 2_3:+59719643 | Msa0302820:three_prime_UTR |
| GGCAATGCTTCTTGGGTGGG+TGG | 0.511007 | 2_3:-59718722 | None:intergenic |
| TGTTGTTGTTGCTGCTTGTG+TGG | 0.515976 | 2_3:-59719486 | None:intergenic |
| CACAGCAGATATGTTGGACT+TGG | 0.518004 | 2_3:+59719281 | Msa0302820:CDS |
| AACAGTGAAAGAAGAAGAAG+AGG | 0.518044 | 2_3:+59717134 | Msa0302820:CDS |
| TGGTGTTTGGTAAAGCCAAC+TGG | 0.518331 | 2_3:+59720025 | Msa0302820:three_prime_UTR |
| AATGAAAAGAGTAATATAAA+CGG | 0.518574 | 2_3:-59719984 | None:intergenic |
| TCACATTGAATGGTTGGCGT+TGG | 0.523297 | 2_3:+59719883 | Msa0302820:three_prime_UTR |
| GCAGGTTATGTTAGTATGAG+AGG | 0.524043 | 2_3:+59718160 | Msa0302820:intron |
| ATTTGAGAAAATAATCCAGC+TGG | 0.524222 | 2_3:-59717453 | None:intergenic |
| ATCTTCATTATGTACATCAA+GGG | 0.529039 | 2_3:-59719641 | None:intergenic |
| GGATTATCAGGTTGATACTT+GGG | 0.529420 | 2_3:+59718372 | Msa0302820:CDS |
| AACTAGCTAGGGAAGAAAAG+TGG | 0.533515 | 2_3:+59719706 | Msa0302820:three_prime_UTR |
| AACAAACACAGCAGATATGT+TGG | 0.533839 | 2_3:+59719275 | Msa0302820:CDS |
| GCGTTGGATTATAACATGGT+GGG | 0.535962 | 2_3:+59719899 | Msa0302820:three_prime_UTR |
| TGTTGTTGAGGTTTGAGTGG+TGG | 0.538426 | 2_3:-59716419 | None:intergenic |
| AAGATGGAGATAAATTAGTA+GGG | 0.538731 | 2_3:+59719659 | Msa0302820:three_prime_UTR |
| ATGAAAATTCGTGCCAAGCG+AGG | 0.540193 | 2_3:+59718694 | Msa0302820:CDS |
| ACATTCTGATTTGGCAAAGG+TGG | 0.545087 | 2_3:-59717327 | None:intergenic |
| ACAATTATGGGAACTAGCTA+GGG | 0.545940 | 2_3:+59719695 | Msa0302820:three_prime_UTR |
| TTGATTCACAGATTTGGTGG+TGG | 0.548258 | 2_3:-59716242 | None:intergenic |
| AGATATGTTGGACTTGGCTG+TGG | 0.548724 | 2_3:+59719287 | Msa0302820:CDS |
| AATTATTACAAATCTGTACA+TGG | 0.552431 | 2_3:-59719540 | None:intergenic |
| AGACCTTCAAAAGCAAGCTC+AGG | 0.554514 | 2_3:+59719320 | Msa0302820:CDS |
| GAAACATTCTGATTTGGCAA+AGG | 0.556566 | 2_3:-59717330 | None:intergenic |
| TTATGTTAGTATGAGAGGAA+TGG | 0.558938 | 2_3:+59718165 | Msa0302820:CDS |
| GTGGTTCTTTGTGCAGCCAA+TGG | 0.563637 | 2_3:-59716289 | None:intergenic |
| AGACATAGTAGTTCACCAGC+TGG | 0.569208 | 2_3:+59717438 | Msa0302820:CDS |
| TTGCAGCCAGTGAAGAATCA+TGG | 0.569699 | 2_3:+59717393 | Msa0302820:CDS |
| ATGTCAACAATAGCTGAAGT+TGG | 0.572331 | 2_3:+59718280 | Msa0302820:CDS |
| GGCGTTGGATTATAACATGG+TGG | 0.573748 | 2_3:+59719898 | Msa0302820:three_prime_UTR |
| ACAAGATCTGGTCCCAAACA+TGG | 0.576424 | 2_3:+59719140 | Msa0302820:CDS |
| GCCAATGGAAAGTGAAAACA+TGG | 0.577004 | 2_3:-59716274 | None:intergenic |
| ATCAATCAAACTATTCATCA+GGG | 0.580340 | 2_3:+59718254 | Msa0302820:CDS |
| TGACACGTGAGGACTTGAGA+TGG | 0.582199 | 2_3:-59716162 | None:intergenic |
| ACCCAAGAAGCATTGCCGAA+AGG | 0.582792 | 2_3:+59718728 | Msa0302820:CDS |
| AAACCTGAAGAATTTACTTG+TGG | 0.586193 | 2_3:-59716934 | None:intergenic |
| GACACGTGAGGACTTGAGAT+GGG | 0.591861 | 2_3:-59716161 | None:intergenic |
| ATAGCTGAAGTTGGTGACAA+AGG | 0.592602 | 2_3:+59718289 | Msa0302820:CDS |
| TGTTGTTGTTGAGGTTTGAG+TGG | 0.595008 | 2_3:-59716422 | None:intergenic |
| CAACAACAACAATAACATAG+AGG | 0.595502 | 2_3:+59716437 | Msa0302820:five_prime_UTR |
| AATCTAGGTAGATTCTAACT+TGG | 0.597414 | 2_3:-59719571 | None:intergenic |
| AATTGGATCTACTTACCACA+TGG | 0.601595 | 2_3:-59719784 | None:intergenic |
| TAAATTCTTCAGGTTTAACA+AGG | 0.602353 | 2_3:+59716941 | Msa0302820:CDS |
| TTCAATCAACAATGAACATG+TGG | 0.608573 | 2_3:+59717209 | Msa0302820:CDS |
| GATTAGAATGAAACAGGAGG+AGG | 0.610884 | 2_3:+59718571 | Msa0302820:intron |
| ACTAGCTAGGGAAGAAAAGT+GGG | 0.615706 | 2_3:+59719707 | Msa0302820:three_prime_UTR |
| TGCAAATGAGAACCACCAGT+TGG | 0.617548 | 2_3:-59720040 | None:intergenic |
| ATGATGTCTGAAAATGTTGG+TGG | 0.620048 | 2_3:+59718406 | Msa0302820:CDS |
| ATACTCAATTGATGAGCCAA+AGG | 0.626112 | 2_3:-59718607 | None:intergenic |
| CAACAACAACAAGAAGATCA+GGG | 0.628138 | 2_3:+59717180 | Msa0302820:CDS |
| TCTTCATTATGTACATCAAG+GGG | 0.648537 | 2_3:-59719640 | None:intergenic |
| ATGTTGTTGAAATATGAACT+TGG | 0.650570 | 2_3:-59716976 | None:intergenic |
| ACAAACTGAGTGTAAGATGA+GGG | 0.663005 | 2_3:-59716185 | None:intergenic |
| GAAATGATGTCTGAAAATGT+TGG | 0.668717 | 2_3:+59718403 | Msa0302820:CDS |
| TAAGATGAGGGTGACACGTG+AGG | 0.669684 | 2_3:-59716173 | None:intergenic |
| GTTGATTAGAATGAAACAGG+AGG | 0.674543 | 2_3:+59718568 | Msa0302820:intron |
| TGTTTGGTAAAGCCAACTGG+TGG | 0.692158 | 2_3:+59720028 | Msa0302820:three_prime_UTR |
| CAGCCAGTGAAGAATCATGG+TGG | 0.713307 | 2_3:+59717396 | Msa0302820:CDS |
| GTTGGCGTTGGATTATAACA+TGG | 0.729880 | 2_3:+59719895 | Msa0302820:three_prime_UTR |
| AACAAACTGAGTGTAAGATG+AGG | 0.742880 | 2_3:-59716186 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTAGTTATTACTTATT+AGG | + | chr2_3:59718062-59718081 | Msa0302820:intron | 10.0% |
| !! | TTAAAGAAATAAAATAGTTT+GGG | - | chr2_3:59718101-59718120 | None:intergenic | 10.0% |
| !!! | ATGGATTATTTTATTTTACA+GGG | - | chr2_3:59716347-59716366 | None:intergenic | 15.0% |
| !!! | AATGGATTATTTTATTTTAC+AGG | - | chr2_3:59716348-59716367 | None:intergenic | 15.0% |
| !!! | TATTTTTTTCTCTTTAAAGT+AGG | - | chr2_3:59717859-59717878 | None:intergenic | 15.0% |
| !!! | TTCAAATTTAACATTTTTCT+AGG | - | chr2_3:59717889-59717908 | None:intergenic | 15.0% |
| !! | TATATATTAAAGATCTCTTT+AGG | + | chr2_3:59717942-59717961 | Msa0302820:intron | 15.0% |
| !! | ATATATTAAAGATCTCTTTA+GGG | + | chr2_3:59717943-59717962 | Msa0302820:intron | 15.0% |
| !!! | TTTTAATATTTGCTATTATG+TGG | + | chr2_3:59717977-59717996 | Msa0302820:intron | 15.0% |
| !! | TAAAGAAATAAAATAGTTTG+GGG | - | chr2_3:59718100-59718119 | None:intergenic | 15.0% |
| !! | GTTAAAGAAATAAAATAGTT+TGG | - | chr2_3:59718102-59718121 | None:intergenic | 15.0% |
| !! | AACAAAAGAAAAGTAATATA+GGG | - | chr2_3:59718928-59718947 | None:intergenic | 15.0% |
| !! | AAACAAAAGAAAAGTAATAT+AGG | - | chr2_3:59718929-59718948 | None:intergenic | 15.0% |
| !!! | ATATTACTTTTCTTTTGTTT+AGG | + | chr2_3:59718929-59718948 | Msa0302820:intron | 15.0% |
| !! | CTAAAACTAAATATGTAAAT+TGG | - | chr2_3:59718965-59718984 | None:intergenic | 15.0% |
| !! | AATGAAAAGAGTAATATAAA+CGG | - | chr2_3:59719987-59720006 | None:intergenic | 15.0% |
| !!! | AAATAGTATTTTATTGTGTG+TGG | - | chr2_3:59716311-59716330 | None:intergenic | 20.0% |
| !!! | AGAAAGAAAGTTTAAAGTAA+TGG | - | chr2_3:59716366-59716385 | None:intergenic | 20.0% |
| !!! | TTTTAGCTGTATATTATTGT+TGG | - | chr2_3:59716393-59716412 | None:intergenic | 20.0% |
| !!! | CAGCTGAATAATTTTTTTTT+TGG | - | chr2_3:59716553-59716572 | None:intergenic | 20.0% |
| !! | AACAAAAAATGATATTGAGA+AGG | - | chr2_3:59716618-59716637 | None:intergenic | 20.0% |
| !! | AGATGAAATTCATTTATTGT+TGG | - | chr2_3:59716776-59716795 | None:intergenic | 20.0% |
| !! | TCTCAAATTAACATTGAAAA+TGG | + | chr2_3:59717468-59717487 | Msa0302820:CDS | 20.0% |
| !! | TGAAGAAAATGAATTGTAAA+AGG | + | chr2_3:59717729-59717748 | Msa0302820:intron | 20.0% |
| !!! | AATTTGAAAATTTTCTTGTC+AGG | + | chr2_3:59717901-59717920 | Msa0302820:intron | 20.0% |
| !!! | ATTTGAAAATTTTCTTGTCA+GGG | + | chr2_3:59717902-59717921 | Msa0302820:intron | 20.0% |
| !!! | TACTATTAAGACATGATTTT+TGG | + | chr2_3:59718990-59719009 | Msa0302820:intron | 20.0% |
| !!! | ACTATTAAGACATGATTTTT+GGG | + | chr2_3:59718991-59719010 | Msa0302820:intron | 20.0% |
| !! | CATTCACATAAATTAATGTA+TGG | - | chr2_3:59719215-59719234 | None:intergenic | 20.0% |
| !! | AATTATTACAAATCTGTACA+TGG | - | chr2_3:59719543-59719562 | None:intergenic | 20.0% |
| !! | TGTACAGATTTGTAATAATT+TGG | + | chr2_3:59719543-59719562 | Msa0302820:three_prime_UTR | 20.0% |
| !! | TAACAAATAAAAGCTAATCT+AGG | - | chr2_3:59719589-59719608 | None:intergenic | 20.0% |
| !!! | CGTACATATTTGTTATTATA+CGG | - | chr2_3:59719855-59719874 | None:intergenic | 20.0% |
| !! | ATATGATGAATTTGTATTTG+AGG | + | chr2_3:59719957-59719976 | Msa0302820:three_prime_UTR | 20.0% |
| !! | TCAGTTTGTTTCCAAAATTA+AGG | + | chr2_3:59716199-59716218 | Msa0302820:five_prime_UTR | 25.0% |
| !! | TACTACATTGTCCTTAATTT+TGG | - | chr2_3:59716213-59716232 | None:intergenic | 25.0% |
| ! | TAAATCTTGATTCACAGATT+TGG | - | chr2_3:59716251-59716270 | None:intergenic | 25.0% |
| ! | TCTACATATAGATCTGAAAA+AGG | + | chr2_3:59716793-59716812 | Msa0302820:intron | 25.0% |
| ! | CTACATATAGATCTGAAAAA+GGG | + | chr2_3:59716794-59716813 | Msa0302820:intron | 25.0% |
| ! | AGAAGTGAAAAAAAAAGCTT+TGG | + | chr2_3:59716872-59716891 | Msa0302820:five_prime_UTR | 25.0% |
| !! | TAAATTCTTCAGGTTTAACA+AGG | + | chr2_3:59716941-59716960 | Msa0302820:CDS | 25.0% |
| ! | ATGTTGTTGAAATATGAACT+TGG | - | chr2_3:59716979-59716998 | None:intergenic | 25.0% |
| !! | TCAAGGTTTATTAACAGTTT+TGG | + | chr2_3:59717066-59717085 | Msa0302820:CDS | 25.0% |
| !!! | TTTAGATGGAAGTTTTTCAA+TGG | + | chr2_3:59717359-59717378 | Msa0302820:CDS | 25.0% |
| !!! | TTAGATGGAAGTTTTTCAAT+GGG | + | chr2_3:59717360-59717379 | Msa0302820:CDS | 25.0% |
| ! | TGTGAGTAAAATTTCAGATT+TGG | - | chr2_3:59717581-59717600 | None:intergenic | 25.0% |
| ! | TAATCAAGTGTAATTACACT+TGG | - | chr2_3:59717636-59717655 | None:intergenic | 25.0% |
| ! | TCTAATAAAATCCACCATTT+CGG | - | chr2_3:59717681-59717700 | None:intergenic | 25.0% |
| !! | ATGAATTGTAAAAGGTTTTC+TGG | + | chr2_3:59717737-59717756 | Msa0302820:intron | 25.0% |
| !! | TTTGAAAATTTTCTTGTCAG+GGG | + | chr2_3:59717903-59717922 | Msa0302820:intron | 25.0% |
| ! | TGAAAAAAAAAAACCCTAGT+GGG | + | chr2_3:59718039-59718058 | Msa0302820:intron | 25.0% |
| ! | AATAACTAATATTCCCACTA+GGG | - | chr2_3:59718055-59718074 | None:intergenic | 25.0% |
| ! | TAATAACTAATATTCCCACT+AGG | - | chr2_3:59718056-59718075 | None:intergenic | 25.0% |
| !! | AACCAAAATTTTCTACTTCA+AGG | + | chr2_3:59718221-59718240 | Msa0302820:CDS | 25.0% |
| !! | TTCCTTGAAGTAGAAAATTT+TGG | - | chr2_3:59718226-59718245 | None:intergenic | 25.0% |
| ! | AATCAATCAAACTATTCATC+AGG | + | chr2_3:59718253-59718272 | Msa0302820:CDS | 25.0% |
| ! | ATCAATCAAACTATTCATCA+GGG | + | chr2_3:59718254-59718273 | Msa0302820:CDS | 25.0% |
| !! | AATGAAGAAAATGAAGCTTT+TGG | + | chr2_3:59718325-59718344 | Msa0302820:CDS | 25.0% |
| !! | TAACGAATATATGGATTATC+AGG | + | chr2_3:59718360-59718379 | Msa0302820:CDS | 25.0% |
| !! | GATTCAAAACAACAATTTTC+TGG | + | chr2_3:59718451-59718470 | Msa0302820:CDS | 25.0% |
| !!! | ATTTTCTGGTTTAAATGTTC+AGG | + | chr2_3:59718465-59718484 | Msa0302820:CDS | 25.0% |
| ! | TCTTAAGTGTAGTTTCTTAA+TGG | + | chr2_3:59718518-59718537 | Msa0302820:intron | 25.0% |
| !! | CATTTGACATGATTTTGTTA+TGG | + | chr2_3:59718546-59718565 | Msa0302820:intron | 25.0% |
| !!! | TTTTTACCTTAGTTCTTATG+AGG | + | chr2_3:59718775-59718794 | Msa0302820:intron | 25.0% |
| ! | TAGAATTATCTATAACCAAG+TGG | - | chr2_3:59718891-59718910 | None:intergenic | 25.0% |
| !! | CTATTAAGACATGATTTTTG+GGG | + | chr2_3:59718992-59719011 | Msa0302820:intron | 25.0% |
| ! | CTCTTAACACATCATTAAAT+TGG | + | chr2_3:59719073-59719092 | Msa0302820:intron | 25.0% |
| ! | GTGTTGGAAGAAAATTAATT+AGG | - | chr2_3:59719425-59719444 | None:intergenic | 25.0% |
| ! | ATCTTCATTATGTACATCAA+GGG | - | chr2_3:59719644-59719663 | None:intergenic | 25.0% |
| ! | AAGATGGAGATAAATTAGTA+GGG | + | chr2_3:59719659-59719678 | Msa0302820:three_prime_UTR | 25.0% |
| !!! | AATTAAGTTGAGTGTAATTG+AGG | + | chr2_3:59719735-59719754 | Msa0302820:three_prime_UTR | 25.0% |
| !!! | ATTAAGTTGAGTGTAATTGA+GGG | + | chr2_3:59719736-59719755 | Msa0302820:three_prime_UTR | 25.0% |
| ! | TAGATCCAATTTAAGCATTT+AGG | + | chr2_3:59719796-59719815 | Msa0302820:three_prime_UTR | 25.0% |
| ! | AGATCCAATTTAAGCATTTA+GGG | + | chr2_3:59719797-59719816 | Msa0302820:three_prime_UTR | 25.0% |
| ! | TAGATTTCATCACCAAATAT+GGG | - | chr2_3:59719823-59719842 | None:intergenic | 25.0% |
| ! | ATAGATTTCATCACCAAATA+TGG | - | chr2_3:59719824-59719843 | None:intergenic | 25.0% |
| !!! | TATTTGGTGATGAAATCTAT+TGG | + | chr2_3:59719824-59719843 | Msa0302820:three_prime_UTR | 25.0% |
| ! | TATAACCAACAAAAATGTGT+CGG | - | chr2_3:59719935-59719954 | None:intergenic | 25.0% |
| !!! | TCATTTTGTTTCTTCAATGT+TGG | + | chr2_3:59720002-59720021 | Msa0302820:three_prime_UTR | 25.0% |
| ! | TGTTATTGTTGTTGTTGTTG+AGG | - | chr2_3:59716434-59716453 | None:intergenic | 30.0% |
| CAACAACAACAATAACATAG+AGG | + | chr2_3:59716437-59716456 | Msa0302820:five_prime_UTR | 30.0% | |
| !! | ACAGGAGAATAAAAAGTGTT+CGG | + | chr2_3:59716469-59716488 | Msa0302820:five_prime_UTR | 30.0% |
| AATGATATTGAGAAGGTCAA+TGG | - | chr2_3:59716611-59716630 | None:intergenic | 30.0% | |
| AAAAAGGGTCAATAATTGCT+TGG | + | chr2_3:59716809-59716828 | Msa0302820:intron | 30.0% | |
| !!! | CAATAATTGCTTGGTTTTGA+AGG | + | chr2_3:59716818-59716837 | Msa0302820:intron | 30.0% |
| ! | AAAGCTTTGGTAGAAAACTA+TGG | + | chr2_3:59716885-59716904 | Msa0302820:exon | 30.0% |
| AACCTGAAGAATTTACTTGT+GGG | - | chr2_3:59716936-59716955 | None:intergenic | 30.0% | |
| AAACCTGAAGAATTTACTTG+TGG | - | chr2_3:59716937-59716956 | None:intergenic | 30.0% | |
| TTCAATCAACAATGAACATG+TGG | + | chr2_3:59717209-59717228 | Msa0302820:CDS | 30.0% | |
| TGATAAAAACCATGAGAAGA+AGG | - | chr2_3:59717294-59717313 | None:intergenic | 30.0% | |
| !! | AATGTTTCTTCTGGTTTAGA+TGG | + | chr2_3:59717345-59717364 | Msa0302820:CDS | 30.0% |
| !! | GTTTTTCAATGGGAGTTAAT+AGG | + | chr2_3:59717370-59717389 | Msa0302820:CDS | 30.0% |
| ATTTGAGAAAATAATCCAGC+TGG | - | chr2_3:59717456-59717475 | None:intergenic | 30.0% | |
| ! | TTTTCTTTGTTACGCACTTT+TGG | + | chr2_3:59717516-59717535 | Msa0302820:intron | 30.0% |
| CTCGTTTCTGTTAAAATAGA+GGG | - | chr2_3:59717543-59717562 | None:intergenic | 30.0% | |
| TCTCGTTTCTGTTAAAATAG+AGG | - | chr2_3:59717544-59717563 | None:intergenic | 30.0% | |
| !!! | TACTGATTTTTGATCCGAAA+TGG | + | chr2_3:59717664-59717683 | Msa0302820:intron | 30.0% |
| !! | TTTCTCTTTAAAGTAGGACA+AGG | - | chr2_3:59717853-59717872 | None:intergenic | 30.0% |
| GTGAAAAAAAAAAACCCTAG+TGG | + | chr2_3:59718038-59718057 | Msa0302820:intron | 30.0% | |
| TGATGTTGTGCAAGTTTAAT+TGG | + | chr2_3:59718138-59718157 | Msa0302820:intron | 30.0% | |
| TTATGTTAGTATGAGAGGAA+TGG | + | chr2_3:59718165-59718184 | Msa0302820:CDS | 30.0% | |
| TATGTTAGTATGAGAGGAAT+GGG | + | chr2_3:59718166-59718185 | Msa0302820:CDS | 30.0% | |
| ! | AAGTCATGGTAACGAATATA+TGG | + | chr2_3:59718351-59718370 | Msa0302820:CDS | 30.0% |
| GAAATGATGTCTGAAAATGT+TGG | + | chr2_3:59718403-59718422 | Msa0302820:CDS | 30.0% | |
| ATGGTTGATTAGAATGAAAC+AGG | + | chr2_3:59718565-59718584 | Msa0302820:intron | 30.0% | |
| ATCAATAATCCATACCCTTT+CGG | - | chr2_3:59718746-59718765 | None:intergenic | 30.0% | |
| CTCAAATGGTTAATAAGCTT+CGG | - | chr2_3:59718864-59718883 | None:intergenic | 30.0% | |
| GAACCTCAATGTACATATAA+TGG | - | chr2_3:59719018-59719037 | None:intergenic | 30.0% | |
| TTAAAACCAATCATGAAGCA+TGG | - | chr2_3:59719174-59719193 | None:intergenic | 30.0% | |
| GTGTTTGTTTGCTTCAAAAA+AGG | - | chr2_3:59719264-59719283 | None:intergenic | 30.0% | |
| AATCTAGGTAGATTCTAACT+TGG | - | chr2_3:59719574-59719593 | None:intergenic | 30.0% | |
| TCTTCATTATGTACATCAAG+GGG | - | chr2_3:59719643-59719662 | None:intergenic | 30.0% | |
| CATCTTCATTATGTACATCA+AGG | - | chr2_3:59719645-59719664 | None:intergenic | 30.0% | |
| CTTGATGTACATAATGAAGA+TGG | + | chr2_3:59719643-59719662 | Msa0302820:three_prime_UTR | 30.0% | |
| GAAGATGGAGATAAATTAGT+AGG | + | chr2_3:59719658-59719677 | Msa0302820:three_prime_UTR | 30.0% | |
| TTGCACTTCTTCAACAATTA+TGG | + | chr2_3:59719682-59719701 | Msa0302820:three_prime_UTR | 30.0% | |
| TGCACTTCTTCAACAATTAT+GGG | + | chr2_3:59719683-59719702 | Msa0302820:three_prime_UTR | 30.0% | |
| !! | TTTTGTTTCTTCAATGTTGG+TGG | + | chr2_3:59720005-59720024 | Msa0302820:three_prime_UTR | 30.0% |
| ACAAACTGAGTGTAAGATGA+GGG | - | chr2_3:59716188-59716207 | None:intergenic | 35.0% | |
| AACAAACTGAGTGTAAGATG+AGG | - | chr2_3:59716189-59716208 | None:intergenic | 35.0% | |
| ATCTTGATTCACAGATTTGG+TGG | - | chr2_3:59716248-59716267 | None:intergenic | 35.0% | |
| ! | ACCATGTTTTCACTTTCCAT+TGG | + | chr2_3:59716273-59716292 | Msa0302820:five_prime_UTR | 35.0% |
| ACATAGAGGAACACATAAAC+AGG | + | chr2_3:59716451-59716470 | Msa0302820:five_prime_UTR | 35.0% | |
| !!! | AAACAGAGCGAGTTTTTTCA+AGG | + | chr2_3:59717049-59717068 | Msa0302820:CDS | 35.0% |
| TGGTTCAGAAGATGATTTAC+TGG | + | chr2_3:59717086-59717105 | Msa0302820:CDS | 35.0% | |
| AACAGTGAAAGAAGAAGAAG+AGG | + | chr2_3:59717134-59717153 | Msa0302820:CDS | 35.0% | |
| ACAACAACAACAAGAAGATC+AGG | + | chr2_3:59717179-59717198 | Msa0302820:CDS | 35.0% | |
| CAACAACAACAAGAAGATCA+GGG | + | chr2_3:59717180-59717199 | Msa0302820:CDS | 35.0% | |
| !! | GAAACATTCTGATTTGGCAA+AGG | - | chr2_3:59717333-59717352 | None:intergenic | 35.0% |
| CCAGAAGAAACATTCTGATT+TGG | - | chr2_3:59717339-59717358 | None:intergenic | 35.0% | |
| CCAAATCAGAATGTTTCTTC+TGG | + | chr2_3:59717336-59717355 | Msa0302820:CDS | 35.0% | |
| ! | TGATTTTTGATCCGAAATGG+TGG | + | chr2_3:59717667-59717686 | Msa0302820:intron | 35.0% |
| TAGTACACGTTACTAGTATG+TGG | + | chr2_3:59717767-59717786 | Msa0302820:intron | 35.0% | |
| TACTAGTATGTGGACTTGTA+AGG | + | chr2_3:59717777-59717796 | Msa0302820:intron | 35.0% | |
| TATTGAAGTTGTACATGCCA+CGG | - | chr2_3:59717809-59717828 | None:intergenic | 35.0% | |
| AAAGTAGGACAAGGAAAACT+GGG | - | chr2_3:59717844-59717863 | None:intergenic | 35.0% | |
| TAAAGTAGGACAAGGAAAAC+TGG | - | chr2_3:59717845-59717864 | None:intergenic | 35.0% | |
| ! | TTTGTACTTGTTGCAACAAG+TGG | + | chr2_3:59718016-59718035 | Msa0302820:intron | 35.0% |
| ATGTCAACAATAGCTGAAGT+TGG | + | chr2_3:59718280-59718299 | Msa0302820:CDS | 35.0% | |
| !! | TGGATTATCAGGTTGATACT+TGG | + | chr2_3:59718371-59718390 | Msa0302820:CDS | 35.0% |
| !! | GGATTATCAGGTTGATACTT+GGG | + | chr2_3:59718372-59718391 | Msa0302820:CDS | 35.0% |
| ATGATGTCTGAAAATGTTGG+TGG | + | chr2_3:59718406-59718425 | Msa0302820:CDS | 35.0% | |
| GGTAGAATACTATCTAGCAT+TGG | + | chr2_3:59718486-59718505 | Msa0302820:intron | 35.0% | |
| GTTGATTAGAATGAAACAGG+AGG | + | chr2_3:59718568-59718587 | Msa0302820:intron | 35.0% | |
| AGGACATTCTAATTCTCCTT+TGG | + | chr2_3:59718591-59718610 | Msa0302820:CDS | 35.0% | |
| ATACTCAATTGATGAGCCAA+AGG | - | chr2_3:59718610-59718629 | None:intergenic | 35.0% | |
| GCCAAATACTTCATCTGAAA+TGG | + | chr2_3:59718630-59718649 | Msa0302820:CDS | 35.0% | |
| ! | GCCATTTCAGATGAAGTATT+TGG | - | chr2_3:59718634-59718653 | None:intergenic | 35.0% |
| TACTTGCCTCATAAGAACTA+AGG | - | chr2_3:59718784-59718803 | None:intergenic | 35.0% | |
| TGGTTAATAAGCTTCGGTTA+AGG | - | chr2_3:59718858-59718877 | None:intergenic | 35.0% | |
| ! | CACATCATTAAATTGGCTTC+AGG | + | chr2_3:59719080-59719099 | Msa0302820:intron | 35.0% |
| ! | TAAATTGGCTTCAGGTTAGA+AGG | + | chr2_3:59719088-59719107 | Msa0302820:intron | 35.0% |
| CTAAAATTAGTGAGCGTATG+AGG | + | chr2_3:59719112-59719131 | Msa0302820:CDS | 35.0% | |
| ATGGTACCTTATCCATGTTT+GGG | - | chr2_3:59719155-59719174 | None:intergenic | 35.0% | |
| AACAAACACAGCAGATATGT+TGG | + | chr2_3:59719275-59719294 | Msa0302820:CDS | 35.0% | |
| TGAAGCTTCTATACAAGTGT+TGG | - | chr2_3:59719441-59719460 | None:intergenic | 35.0% | |
| AGCAGCAACAACAACAATAA+CGG | + | chr2_3:59719493-59719512 | Msa0302820:CDS | 35.0% | |
| GGGGTGAATGAATTTATCTT+TGG | - | chr2_3:59719624-59719643 | None:intergenic | 35.0% | |
| AACAATTATGGGAACTAGCT+AGG | + | chr2_3:59719694-59719713 | Msa0302820:three_prime_UTR | 35.0% | |
| ACAATTATGGGAACTAGCTA+GGG | + | chr2_3:59719695-59719714 | Msa0302820:three_prime_UTR | 35.0% | |
| GTATGTACAAAAAGTCCATG+TGG | + | chr2_3:59719769-59719788 | Msa0302820:three_prime_UTR | 35.0% | |
| AATTGGATCTACTTACCACA+TGG | - | chr2_3:59719787-59719806 | None:intergenic | 35.0% | |
| CGTTTACGTTTCACATTGAA+TGG | + | chr2_3:59719873-59719892 | Msa0302820:three_prime_UTR | 35.0% | |
| TACGTTTCACATTGAATGGT+TGG | + | chr2_3:59719877-59719896 | Msa0302820:three_prime_UTR | 35.0% | |
| GACTTGAGATGGGAGAAAAA+GGG | - | chr2_3:59716154-59716173 | None:intergenic | 40.0% | |
| !! | TTGATTCACAGATTTGGTGG+TGG | - | chr2_3:59716245-59716264 | None:intergenic | 40.0% |
| GCCAATGGAAAGTGAAAACA+TGG | - | chr2_3:59716277-59716296 | None:intergenic | 40.0% | |
| ! | TGTTGTTGTTGAGGTTTGAG+TGG | - | chr2_3:59716425-59716444 | None:intergenic | 40.0% |
| ! | AGTGTTCGGTTTTTACACAG+AGG | + | chr2_3:59716483-59716502 | Msa0302820:five_prime_UTR | 40.0% |
| AACAGGACAAAACAGAGGAA+TGG | - | chr2_3:59716712-59716731 | None:intergenic | 40.0% | |
| TACGAAACAGGACAAAACAG+AGG | - | chr2_3:59716717-59716736 | None:intergenic | 40.0% | |
| TGAACTGTGAAGTATGGTGA+AGG | - | chr2_3:59716749-59716768 | None:intergenic | 40.0% | |
| GGAGTTTGAACTGTGAAGTA+TGG | - | chr2_3:59716755-59716774 | None:intergenic | 40.0% | |
| CACCCACAAGTAAATTCTTC+AGG | + | chr2_3:59716931-59716950 | Msa0302820:CDS | 40.0% | |
| GAAAAAACTCGCTCTGTTTC+TGG | - | chr2_3:59717048-59717067 | None:intergenic | 40.0% | |
| ACAACAAGAAGATCAGGGTT+TGG | + | chr2_3:59717185-59717204 | Msa0302820:CDS | 40.0% | |
| AACTCTGTTCCTTCTTCTCA+TGG | + | chr2_3:59717282-59717301 | Msa0302820:CDS | 40.0% | |
| !! | ACATTCTGATTTGGCAAAGG+TGG | - | chr2_3:59717330-59717349 | None:intergenic | 40.0% |
| TTTCCACCATGATTCTTCAC+TGG | - | chr2_3:59717402-59717421 | None:intergenic | 40.0% | |
| GTTGTGCAAGTTTAATTGGC+AGG | + | chr2_3:59718142-59718161 | Msa0302820:intron | 40.0% | |
| GCAGGTTATGTTAGTATGAG+AGG | + | chr2_3:59718160-59718179 | Msa0302820:intron | 40.0% | |
| ATGAGAGGAATGGGAACTTT+AGG | + | chr2_3:59718175-59718194 | Msa0302820:CDS | 40.0% | |
| !! | ATAGCTGAAGTTGGTGACAA+AGG | + | chr2_3:59718289-59718308 | Msa0302820:CDS | 40.0% |
| ! | GAAGCTTTTGGTGAAAGTCA+TGG | + | chr2_3:59718337-59718356 | Msa0302820:CDS | 40.0% |
| GATTAGAATGAAACAGGAGG+AGG | + | chr2_3:59718571-59718590 | Msa0302820:intron | 40.0% | |
| ! | TTCATCTGAAATGGCAGCTA+TGG | + | chr2_3:59718639-59718658 | Msa0302820:CDS | 40.0% |
| AACCATTTGAGCAAACCACT+TGG | + | chr2_3:59718873-59718892 | Msa0302820:intron | 40.0% | |
| !! | AACCAAGTGGTTTGCTCAAA+TGG | - | chr2_3:59718878-59718897 | None:intergenic | 40.0% |
| GGGCCATTATATGTACATTG+AGG | + | chr2_3:59719012-59719031 | Msa0302820:intron | 40.0% | |
| TATGAGGAAGCTACAAGATC+TGG | + | chr2_3:59719128-59719147 | Msa0302820:CDS | 40.0% | |
| CATGGTACCTTATCCATGTT+TGG | - | chr2_3:59719156-59719175 | None:intergenic | 40.0% | |
| ! | AAGGTACCATGCTTCATGAT+TGG | + | chr2_3:59719165-59719184 | Msa0302820:intron | 40.0% |
| !! | ATACCTGAGCTTGCTTTTGA+AGG | - | chr2_3:59719326-59719345 | None:intergenic | 40.0% |
| AACTAGCTAGGGAAGAAAAG+TGG | + | chr2_3:59719706-59719725 | Msa0302820:three_prime_UTR | 40.0% | |
| ACTAGCTAGGGAAGAAAAGT+GGG | + | chr2_3:59719707-59719726 | Msa0302820:three_prime_UTR | 40.0% | |
| TGGGCCCTAAATGCTTAAAT+TGG | - | chr2_3:59719804-59719823 | None:intergenic | 40.0% | |
| ! | AAGCATTTAGGGCCCATATT+TGG | + | chr2_3:59719808-59719827 | Msa0302820:three_prime_UTR | 40.0% |
| ! | GTTGGCGTTGGATTATAACA+TGG | + | chr2_3:59719895-59719914 | Msa0302820:three_prime_UTR | 40.0% |
| GCGTTGGATTATAACATGGT+GGG | + | chr2_3:59719899-59719918 | Msa0302820:three_prime_UTR | 40.0% | |
| ! | ACAAAAATGTGTCGGTGTCT+CGG | - | chr2_3:59719927-59719946 | None:intergenic | 40.0% |
| ! | AGACACCGACACATTTTTGT+TGG | + | chr2_3:59719927-59719946 | Msa0302820:three_prime_UTR | 40.0% |
| !! | TCTTCAATGTTGGTGGTGTT+TGG | + | chr2_3:59720012-59720031 | Msa0302820:three_prime_UTR | 40.0% |
| GGACTTGAGATGGGAGAAAA+AGG | - | chr2_3:59716155-59716174 | None:intergenic | 45.0% | |
| TGTTGTTGAGGTTTGAGTGG+TGG | - | chr2_3:59716422-59716441 | None:intergenic | 45.0% | |
| AGGTAGAGTGCATACGAAAC+AGG | - | chr2_3:59716729-59716748 | None:intergenic | 45.0% | |
| TTGCAGCCAGTGAAGAATCA+TGG | + | chr2_3:59717393-59717412 | Msa0302820:CDS | 45.0% | |
| AGACATAGTAGTTCACCAGC+TGG | + | chr2_3:59717438-59717457 | Msa0302820:CDS | 45.0% | |
| ! | CGCTTGGCACGAATTTTCAT+CGG | - | chr2_3:59718694-59718713 | None:intergenic | 45.0% |
| ATGAAAATTCGTGCCAAGCG+AGG | + | chr2_3:59718694-59718713 | Msa0302820:CDS | 45.0% | |
| ACAAGATCTGGTCCCAAACA+TGG | + | chr2_3:59719140-59719159 | Msa0302820:CDS | 45.0% | |
| TCTGGTCCCAAACATGGATA+AGG | + | chr2_3:59719146-59719165 | Msa0302820:CDS | 45.0% | |
| CACAGCAGATATGTTGGACT+TGG | + | chr2_3:59719281-59719300 | Msa0302820:CDS | 45.0% | |
| AGATATGTTGGACTTGGCTG+TGG | + | chr2_3:59719287-59719306 | Msa0302820:CDS | 45.0% | |
| AGACCTTCAAAAGCAAGCTC+AGG | + | chr2_3:59719320-59719339 | Msa0302820:CDS | 45.0% | |
| ! | GTTGTTGTTGCTGCTTGTGT+GGG | - | chr2_3:59719488-59719507 | None:intergenic | 45.0% |
| ! | TGTTGTTGTTGCTGCTTGTG+TGG | - | chr2_3:59719489-59719508 | None:intergenic | 45.0% |
| TCACATTGAATGGTTGGCGT+TGG | + | chr2_3:59719883-59719902 | Msa0302820:three_prime_UTR | 45.0% | |
| ! | GGCGTTGGATTATAACATGG+TGG | + | chr2_3:59719898-59719917 | Msa0302820:three_prime_UTR | 45.0% |
| TGGTGTTTGGTAAAGCCAAC+TGG | + | chr2_3:59720025-59720044 | Msa0302820:three_prime_UTR | 45.0% | |
| TGTTTGGTAAAGCCAACTGG+TGG | + | chr2_3:59720028-59720047 | Msa0302820:three_prime_UTR | 45.0% | |
| TGCAAATGAGAACCACCAGT+TGG | - | chr2_3:59720043-59720062 | None:intergenic | 45.0% | |
| !! | GAAAAATATATATAAAAATA+GGG | - | chr2_3:59716684-59716703 | None:intergenic | 5.0% |
| !! | TGAAAAATATATATAAAAAT+AGG | - | chr2_3:59716685-59716704 | None:intergenic | 5.0% |
| GACACGTGAGGACTTGAGAT+GGG | - | chr2_3:59716164-59716183 | None:intergenic | 50.0% | |
| TGACACGTGAGGACTTGAGA+TGG | - | chr2_3:59716165-59716184 | None:intergenic | 50.0% | |
| TAAGATGAGGGTGACACGTG+AGG | - | chr2_3:59716176-59716195 | None:intergenic | 50.0% | |
| GTGGTTCTTTGTGCAGCCAA+TGG | - | chr2_3:59716292-59716311 | None:intergenic | 50.0% | |
| !! | CGCTCTGTTTCTGGACTTGA+TGG | - | chr2_3:59717039-59717058 | None:intergenic | 50.0% |
| CAGCCAGTGAAGAATCATGG+TGG | + | chr2_3:59717396-59717415 | Msa0302820:CDS | 50.0% | |
| !! | GACTTGTAAGGTACTGTCCG+TGG | + | chr2_3:59717789-59717808 | Msa0302820:intron | 50.0% |
| TTCGGCAATGCTTCTTGGGT+GGG | - | chr2_3:59718728-59718747 | None:intergenic | 50.0% | |
| TTTCGGCAATGCTTCTTGGG+TGG | - | chr2_3:59718729-59718748 | None:intergenic | 50.0% | |
| !! | ACCCAAGAAGCATTGCCGAA+AGG | + | chr2_3:59718728-59718747 | Msa0302820:CDS | 50.0% |
| CCCTTTCGGCAATGCTTCTT+GGG | - | chr2_3:59718732-59718751 | None:intergenic | 50.0% | |
| !! | CCCAAGAAGCATTGCCGAAA+GGG | + | chr2_3:59718729-59718748 | Msa0302820:CDS | 50.0% |
| ACCCTTTCGGCAATGCTTCT+TGG | - | chr2_3:59718733-59718752 | None:intergenic | 50.0% | |
| !! | GAAGCATTGCCGAAAGGGTA+TGG | + | chr2_3:59718734-59718753 | Msa0302820:intron | 50.0% |
| GGCAATGCTTCTTGGGTGGG+TGG | - | chr2_3:59718725-59718744 | None:intergenic | 60.0% | |
| GTGGGTGGCACAACCTCGCT+TGG | - | chr2_3:59718710-59718729 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 59716135 | 59720133 | 59716135 | ID=Msa0302820;Name=Msa0302820 |
| chr2_3 | mRNA | 59716135 | 59720133 | 59716135 | ID=Msa0302820-mRNA-1;Parent=Msa0302820;Name=Msa0302820-mRNA-1;_AED=0.12;_eAED=0.12;_QI=434|1|1|1|0.83|0.71|7|621|425 |
| chr2_3 | exon | 59716135 | 59716504 | 59716135 | ID=Msa0302820-mRNA-1:exon:19428;Parent=Msa0302820-mRNA-1 |
| chr2_3 | exon | 59716840 | 59717489 | 59716840 | ID=Msa0302820-mRNA-1:exon:19429;Parent=Msa0302820-mRNA-1 |
| chr2_3 | exon | 59718164 | 59718486 | 59718164 | ID=Msa0302820-mRNA-1:exon:19430;Parent=Msa0302820-mRNA-1 |
| chr2_3 | exon | 59718577 | 59718750 | 59718577 | ID=Msa0302820-mRNA-1:exon:19431;Parent=Msa0302820-mRNA-1 |
| chr2_3 | exon | 59719102 | 59719167 | 59719102 | ID=Msa0302820-mRNA-1:exon:19432;Parent=Msa0302820-mRNA-1 |
| chr2_3 | exon | 59719273 | 59719341 | 59719273 | ID=Msa0302820-mRNA-1:exon:19433;Parent=Msa0302820-mRNA-1 |
| chr2_3 | exon | 59719453 | 59720133 | 59719453 | ID=Msa0302820-mRNA-1:exon:19434;Parent=Msa0302820-mRNA-1 |
| chr2_3 | five_prime_UTR | 59716135 | 59716504 | 59716135 | ID=Msa0302820-mRNA-1:five_prime_utr;Parent=Msa0302820-mRNA-1 |
| chr2_3 | five_prime_UTR | 59716840 | 59716903 | 59716840 | ID=Msa0302820-mRNA-1:five_prime_utr;Parent=Msa0302820-mRNA-1 |
| chr2_3 | CDS | 59716904 | 59717489 | 59716904 | ID=Msa0302820-mRNA-1:cds;Parent=Msa0302820-mRNA-1 |
| chr2_3 | CDS | 59718164 | 59718486 | 59718164 | ID=Msa0302820-mRNA-1:cds;Parent=Msa0302820-mRNA-1 |
| chr2_3 | CDS | 59718577 | 59718750 | 59718577 | ID=Msa0302820-mRNA-1:cds;Parent=Msa0302820-mRNA-1 |
| chr2_3 | CDS | 59719102 | 59719167 | 59719102 | ID=Msa0302820-mRNA-1:cds;Parent=Msa0302820-mRNA-1 |
| chr2_3 | CDS | 59719273 | 59719341 | 59719273 | ID=Msa0302820-mRNA-1:cds;Parent=Msa0302820-mRNA-1 |
| chr2_3 | CDS | 59719453 | 59719512 | 59719453 | ID=Msa0302820-mRNA-1:cds;Parent=Msa0302820-mRNA-1 |
| chr2_3 | three_prime_UTR | 59719513 | 59720133 | 59719513 | ID=Msa0302820-mRNA-1:three_prime_utr;Parent=Msa0302820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
