AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0516370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0516370 MtrunA17_Chr3g0126961 93.476 797 21 1 1 766 1 797 0.0 1505
Msa0516370 MtrunA17_Chr5g0409191 37.162 148 85 2 618 765 240 379 1.43e-17 85.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0516370 AT5G53020.3 43.031 739 347 15 59 766 17 712 2.33e-150 456
Msa0516370 AT5G53020.4 43.031 739 347 15 59 766 17 712 2.33e-150 456
Msa0516370 AT5G53020.5 43.031 739 347 15 59 766 17 712 2.33e-150 456
Msa0516370 AT5G53020.1 43.031 739 347 15 59 766 17 712 2.33e-150 456
Msa0516370 AT5G53020.8 43.031 739 347 15 59 766 17 712 2.33e-150 456
Msa0516370 AT5G53020.10 43.031 739 347 15 59 766 17 712 2.33e-150 456
Msa0516370 AT5G53020.9 43.031 739 347 15 59 766 17 712 2.33e-150 456
Msa0516370 AT5G53020.6 42.625 739 351 14 59 766 17 713 7.00e-150 455
Msa0516370 AT5G53020.7 42.625 739 351 14 59 766 17 713 7.00e-150 455
Msa0516370 AT5G53020.2 43.551 721 333 15 77 766 26 703 3.16e-149 453
Msa0516370 AT3G45900.1 35.065 231 119 7 534 760 170 373 1.30e-19 92.4

Find 122 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCAATCAAAGATTGTTTC+TGG 0.151138 3_4:+67896939 Msa0516370:CDS
TAGCAATAATGGAACTTAAA+AGG 0.208389 3_4:+67897140 Msa0516370:exon
TCAAGGAAGTGCACAGCTTT+TGG 0.210804 3_4:+67894123 Msa0516370:CDS
TGCAAAATTTCACAAGGATT+TGG 0.229217 3_4:+67894741 Msa0516370:CDS
CTAAACCTCTTTGAACTTCA+TGG 0.240686 3_4:-67897043 None:intergenic
ATGAGAAGTTAGAGGCATTT+AGG 0.253487 3_4:+67895632 Msa0516370:CDS
GTTCAAAAGGAAGTGATAAA+TGG 0.266617 3_4:+67894163 Msa0516370:CDS
GCATCAATTTCTCTGTGATT+TGG 0.278601 3_4:-67896111 None:intergenic
GGAATGTATCCAATATATTT+TGG 0.307642 3_4:+67894010 Msa0516370:CDS
CTCAAGGTCACCTATAATTC+TGG 0.315128 3_4:-67897078 None:intergenic
TAATAACATCAATTTGTATA+TGG 0.320958 3_4:+67897243 Msa0516370:three_prime_UTR
GAGACATGACAAGATGAAAT+TGG 0.321303 3_4:+67895735 Msa0516370:CDS
CGGTCGTGCTGTTAAGCATT+TGG 0.322816 3_4:+67894636 Msa0516370:CDS
ATGCTAAACGTTTGGAAGAT+TGG 0.326615 3_4:+67895518 Msa0516370:CDS
GTTCGGACAGCCAGAATTAT+AGG 0.330038 3_4:+67897068 Msa0516370:CDS
TTCAAAAGGAAGTGATAAAT+GGG 0.332640 3_4:+67894164 Msa0516370:CDS
CAAGAAACACCAAAATATAT+TGG 0.335840 3_4:-67894019 None:intergenic
ACTTTGCTGAATAAACAAAT+TGG 0.339160 3_4:+67896351 Msa0516370:CDS
TTCAAAGAGGTTTAGAAGTT+CGG 0.354728 3_4:+67897051 Msa0516370:CDS
TCCTGCTAATGCTAAACGTT+TGG 0.356798 3_4:+67895510 Msa0516370:CDS
GTTTGAGAAGGTAGCAATAA+TGG 0.357643 3_4:+67897129 Msa0516370:exon
GTTCAGCTTCAAGATGTCTT+TGG 0.358290 3_4:-67894612 None:intergenic
TGCTAAACGTTTGGAAGATT+GGG 0.358713 3_4:+67895519 Msa0516370:CDS
CAAAGAGGAGTCTGATTTGA+TGG 0.372221 3_4:+67894696 Msa0516370:CDS
ACCAATTTGCTTCAAAATTG+AGG 0.378661 3_4:+67895803 Msa0516370:CDS
GAGAAAGGAGCTAGAAGAAA+AGG 0.388393 3_4:+67894474 Msa0516370:CDS
GAAATTGGAGAGCTTATTGT+TGG 0.396045 3_4:+67895750 Msa0516370:CDS
TTAAGTTATCAAAGGCTAGA+AGG 0.396326 3_4:+67894845 Msa0516370:CDS
ATTGTTGAAACTATGCTTCA+AGG 0.396530 3_4:+67894106 Msa0516370:CDS
ATTGAAGGAAATGGAGGGTT+TGG 0.398883 3_4:+67894411 Msa0516370:CDS
ATTAGTGAAGATAGCAAAGT+TGG 0.402279 3_4:+67896303 Msa0516370:CDS
CAAAGATATATTGTTGCAAC+AGG 0.409586 3_4:+67896900 Msa0516370:CDS
TTTATTCAGCAAAGTAATCA+AGG 0.412723 3_4:-67896343 None:intergenic
AAGATTGTTTCTGGATTTGT+TGG 0.423223 3_4:+67896948 Msa0516370:CDS
AGCAATAATGGAACTTAAAA+GGG 0.425201 3_4:+67897141 Msa0516370:exon
TCCAAACGTTTAGCATTAGC+AGG 0.434400 3_4:-67895511 None:intergenic
GATGGTTCAGAAATTAACTT+TGG 0.439228 3_4:+67894714 Msa0516370:CDS
TCAGTCACACTTGGAGGGAT+TGG 0.440819 3_4:+67895693 Msa0516370:CDS
TGTTGGAGTGGCAGAAGAGA+TGG 0.441207 3_4:+67896965 Msa0516370:CDS
CAAAACTGCTTTCATTGAGC+TGG 0.443907 3_4:+67894582 Msa0516370:CDS
GAAGGAAATGGAGGGTTTGG+TGG 0.446618 3_4:+67894414 Msa0516370:CDS
ATTGATGCTGCTGAAAAGAT+AGG 0.447135 3_4:+67896126 Msa0516370:CDS
GAATCAGAAATTGAAGGAAA+TGG 0.447469 3_4:+67894402 Msa0516370:CDS
GAGCTTATTGTTGGAGAGAG+TGG 0.451097 3_4:+67895759 Msa0516370:CDS
TTGTTTCTAAAGCAGTTTGA+AGG 0.452487 3_4:-67895826 None:intergenic
AGATAAGAAGATTGAAGAAG+AGG 0.454313 3_4:+67894444 Msa0516370:CDS
AAGAGCATTCTTCTGATCTC+AGG 0.461075 3_4:+67894554 Msa0516370:CDS
GTCAAATTGATCATGATTCA+AGG 0.469034 3_4:-67895992 None:intergenic
ATTCTAATTGAAAGGTTGAC+AGG 0.470453 3_4:+67896252 Msa0516370:CDS
GATCAAAGATGAGAAGTTAG+AGG 0.475117 3_4:+67895624 Msa0516370:CDS
AATGATGGAAACTTTGATTG+AGG 0.477833 3_4:+67895945 Msa0516370:CDS
GATTGAGGAAGTTTGTGAAA+AGG 0.480885 3_4:+67895960 Msa0516370:CDS
GGAAATGGAGGGTTTGGTGG+AGG 0.482360 3_4:+67894417 Msa0516370:CDS
GTTCTCCGCGATTTGCATAG+AGG 0.490823 3_4:-67896809 None:intergenic
AAGAAGAAAAGCATGTTTGT+CGG 0.491398 3_4:+67896055 Msa0516370:CDS
AGCAACTAATTCTAATTGAA+AGG 0.495011 3_4:+67896244 Msa0516370:CDS
AAATTACTCAAGATCCTGTC+TGG 0.496376 3_4:+67895875 Msa0516370:CDS
TGCTGCATGCCTCTTGCACT+AGG 0.496644 3_4:-67894979 None:intergenic
AGAGGAACTTATTTCTGTCA+TGG 0.499376 3_4:+67894669 Msa0516370:CDS
GATTGTGTGGAAAGTTCAAA+AGG 0.499495 3_4:+67894150 Msa0516370:CDS
ACCACTTCTCCTAAGTGTCT+TGG 0.500605 3_4:-67897404 None:intergenic
AGTGATAATATTGATGATGA+TGG 0.503396 3_4:+67893989 Msa0516370:CDS
GCAGCTTCAGTCACACTTGG+AGG 0.505207 3_4:+67895687 Msa0516370:CDS
TTGCTGCACAAGAACAAAGC+TGG 0.505614 3_4:+67894284 Msa0516370:CDS
AGAAGAAAAGCATGTTTGTC+GGG 0.506234 3_4:+67896056 Msa0516370:CDS
GCATTTGGATGCTACAAAAG+AGG 0.512415 3_4:+67894651 Msa0516370:CDS
ACGTTTAGCATTAGCAGGAA+TGG 0.513905 3_4:-67895506 None:intergenic
AAAGCTGAAAAGTGCTGAGA+TGG 0.516211 3_4:+67894195 Msa0516370:CDS
TCAGAAATTGAAGGAAATGG+AGG 0.519896 3_4:+67894405 Msa0516370:CDS
AAAGCAAATGCTGTTGAAAG+AGG 0.523700 3_4:+67894822 Msa0516370:CDS
GATGAACTTGAGTTCTAGAA+AGG 0.526184 3_4:+67894948 Msa0516370:CDS
CTTTGATACTGCACAGGAGT+AGG 0.526778 3_4:-67896087 None:intergenic
AAGATGGATCTTCATGCGCT+TGG 0.528734 3_4:+67896192 Msa0516370:CDS
CTGAGCATGAAACGGAAAAG+TGG 0.530949 3_4:+67894875 Msa0516370:CDS
GAAGAGATGGAGAAAAGTGC+TGG 0.533742 3_4:+67896978 Msa0516370:CDS
TGAATTGAATCAGAAATTGA+AGG 0.534394 3_4:+67894396 Msa0516370:CDS
GAAAGAGGTTAAGTTATCAA+AGG 0.545103 3_4:+67894837 Msa0516370:CDS
GCATGTTATCCAAGACACTT+AGG 0.547816 3_4:+67897395 Msa0516370:three_prime_UTR
AAAACAATTCCAGTGGAAGA+TGG 0.549249 3_4:+67896176 Msa0516370:CDS
GGGTGAGAGCTGAGACAGAA+AGG 0.549921 3_4:+67895539 Msa0516370:CDS
AGGAAACTTCGACAACAGAT+TGG 0.551051 3_4:+67894319 Msa0516370:CDS
TCCAAGACACTTAGGAGAAG+TGG 0.552872 3_4:+67897403 Msa0516370:three_prime_UTR
GAAGCATGCTGAGCATGAAA+CGG 0.556352 3_4:+67894867 Msa0516370:CDS
ACAAATAAACACTTGAGGAA+AGG 0.561365 3_4:-67897178 None:intergenic
GAAAATAATTCAAATGTGAC+TGG 0.561641 3_4:+67897277 Msa0516370:three_prime_UTR
AAAGCTGGTTTAGCGAAAGA+AGG 0.572971 3_4:+67894299 Msa0516370:CDS
CAGAAATTGAAGGAAATGGA+GGG 0.572990 3_4:+67894406 Msa0516370:CDS
CATTCGTTTGCAAAGATCGT+CGG 0.573921 3_4:-67896400 None:intergenic
CAGCTTCAGTCACACTTGGA+GGG 0.574526 3_4:+67895688 Msa0516370:CDS
CATGAAGATCCATCTTCCAC+TGG 0.574920 3_4:-67896185 None:intergenic
TCAAATTGATCATGATTCAA+GGG 0.575779 3_4:-67895991 None:intergenic
AGACATCTTGAAGCTGAACT+CGG 0.580639 3_4:+67894616 Msa0516370:CDS
TTTGGACTTTGATACTGCAC+AGG 0.581379 3_4:-67896093 None:intergenic
AAGGAATGATATGTTTGAGA+AGG 0.585836 3_4:+67897117 Msa0516370:CDS
TTCTGTCATGGAGAACAAAG+AGG 0.590110 3_4:+67894681 Msa0516370:CDS
AGAGAATCTGCTAAACGTGA+AGG 0.597592 3_4:+67894529 Msa0516370:CDS
CTATTCCATGAAGTTCAAAG+AGG 0.600346 3_4:+67897038 Msa0516370:CDS
AGGTGACCTTGAGGGAACAT+TGG 0.600537 3_4:+67897088 Msa0516370:CDS
AAAGCAGCTTCAGTCACACT+TGG 0.601610 3_4:+67895684 Msa0516370:CDS
GAGTATCTTACAAGATCAAG+AGG 0.601910 3_4:+67896214 Msa0516370:CDS
GAGGGAACATTGGCTCGTGA+AGG 0.602293 3_4:+67897098 Msa0516370:CDS
CAGAATTATAGGTGACCTTG+AGG 0.607753 3_4:+67897079 Msa0516370:CDS
ACACTTGGAGGGATTGGTGA+AGG 0.608312 3_4:+67895699 Msa0516370:CDS
TGTTTCTGGATTTGTTGGAG+TGG 0.609479 3_4:+67896953 Msa0516370:CDS
CACGAGCCAATGTTCCCTCA+AGG 0.611253 3_4:-67897094 None:intergenic
AAGATTGTGAAGAGAAAACC+AGG 0.612078 3_4:+67895907 Msa0516370:CDS
CGACGATCTTTGCAAACGAA+TGG 0.616168 3_4:+67896401 Msa0516370:CDS
ATGATGCAAAACAATTCCAG+TGG 0.616654 3_4:+67896169 Msa0516370:CDS
GCTGCATGCCTCTTGCACTA+GGG 0.621766 3_4:-67894978 None:intergenic
TGAGGAAGTTTGTGAAAAGG+AGG 0.626585 3_4:+67895963 Msa0516370:CDS
ATCTTGACTCTAGACCAGAC+AGG 0.627708 3_4:-67895889 None:intergenic
TCAAAAGGAAGTGATAAATG+GGG 0.629196 3_4:+67894165 Msa0516370:CDS
AAGTGGAGAGAAGCTTCAGA+AGG 0.629714 3_4:+67894892 Msa0516370:CDS
TGAGTAATTTCTGAAGATTG+CGG 0.630512 3_4:-67895862 None:intergenic
AGAATTATAGGTGACCTTGA+GGG 0.630636 3_4:+67897080 Msa0516370:CDS
CAAAAGGAAGTGATAAATGG+GGG 0.635891 3_4:+67894166 Msa0516370:CDS
GGAGATTGCAAAATTTCACA+AGG 0.637872 3_4:+67894735 Msa0516370:CDS
TATAGACAAATAAACACTTG+AGG 0.646326 3_4:-67897183 None:intergenic
AGAAAAGCATGTTTGTCGGG+AGG 0.653415 3_4:+67896059 Msa0516370:CDS
AGAAGTTAGAGGCATTTAGG+TGG 0.657198 3_4:+67895635 Msa0516370:CDS
ATGCAACTCTGATTGAACAA+AGG 0.686777 3_4:+67895563 Msa0516370:CDS
AATGTCCTCTATGCAAATCG+CGG 0.688926 3_4:+67896804 Msa0516370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGATAATATAAATTCAAAT+TGG + chr3_4:67895236-67895255 Msa0516370:intron 10.0%
!!! ATTTTTTAGAATATTGCAAA+TGG - chr3_4:67896612-67896631 None:intergenic 15.0%
!! TCATTTATGATATTGAAAAA+TGG + chr3_4:67896673-67896692 Msa0516370:intron 15.0%
!! TAATAACATCAATTTGTATA+TGG + chr3_4:67897243-67897262 Msa0516370:three_prime_UTR 15.0%
!!! GTTCATCAACATATTTTTAA+AGG - chr3_4:67894935-67894954 None:intergenic 20.0%
!!! TTATTTTATATAAGCTCTCA+AGG - chr3_4:67895297-67895316 None:intergenic 20.0%
!!! AATTGTTTTGCATCATTAAA+GGG - chr3_4:67896165-67896184 None:intergenic 20.0%
!! AATTAAATCATATCTCATCA+TGG - chr3_4:67896556-67896575 None:intergenic 20.0%
!!! AGTGATAATATTGATGATGA+TGG + chr3_4:67893989-67894008 Msa0516370:CDS 25.0%
!! GGAATGTATCCAATATATTT+TGG + chr3_4:67894010-67894029 Msa0516370:CDS 25.0%
! CAAGAAACACCAAAATATAT+TGG - chr3_4:67894022-67894041 None:intergenic 25.0%
! TTCAAAAGGAAGTGATAAAT+GGG + chr3_4:67894164-67894183 Msa0516370:CDS 25.0%
! AAAGCAAATGAAAAAGTTGT+AGG + chr3_4:67894256-67894275 Msa0516370:CDS 25.0%
! AAGCAAATGAAAAAGTTGTA+GGG + chr3_4:67894257-67894276 Msa0516370:CDS 25.0%
!!! TAAGAGTGTTTGAGAAAAAA+AGG + chr3_4:67894359-67894378 Msa0516370:CDS 25.0%
!!! AAGAGTGTTTGAGAAAAAAA+GGG + chr3_4:67894360-67894379 Msa0516370:CDS 25.0%
! TGAATTGAATCAGAAATTGA+AGG + chr3_4:67894396-67894415 Msa0516370:CDS 25.0%
!! TTGTTCATTTGAAATATGTG+AGG - chr3_4:67895022-67895041 None:intergenic 25.0%
!!! TCTCAAGTTTATTTGTTGTT+AGG + chr3_4:67895126-67895145 Msa0516370:intron 25.0%
!! TTAAGTTGTTTATGCAAACA+AGG - chr3_4:67895152-67895171 None:intergenic 25.0%
! TTGTACACTAAAGTTATGTT+TGG - chr3_4:67895420-67895439 None:intergenic 25.0%
! TCAAATTGATCATGATTCAA+GGG - chr3_4:67895994-67896013 None:intergenic 25.0%
!!! TCTTCTTCAATCTTATTTTC+TGG - chr3_4:67896042-67896061 None:intergenic 25.0%
!!! GAATTGTTTTGCATCATTAA+AGG - chr3_4:67896166-67896185 None:intergenic 25.0%
! AGCAACTAATTCTAATTGAA+AGG + chr3_4:67896244-67896263 Msa0516370:CDS 25.0%
! TTTATTCAGCAAAGTAATCA+AGG - chr3_4:67896346-67896365 None:intergenic 25.0%
! ACTTTGCTGAATAAACAAAT+TGG + chr3_4:67896351-67896370 Msa0516370:CDS 25.0%
! ACATTAAAAAGAAGCCAAAA+AGG - chr3_4:67896653-67896672 None:intergenic 25.0%
! ACTGAATAATGCAAGAAAAA+AGG + chr3_4:67896830-67896849 Msa0516370:CDS 25.0%
! ATTCAATCAAAGATTGTTTC+TGG + chr3_4:67896939-67896958 Msa0516370:CDS 25.0%
!! TAGCAATAATGGAACTTAAA+AGG + chr3_4:67897140-67897159 Msa0516370:exon 25.0%
!! AGCAATAATGGAACTTAAAA+GGG + chr3_4:67897141-67897160 Msa0516370:exon 25.0%
! TATAGACAAATAAACACTTG+AGG - chr3_4:67897186-67897205 None:intergenic 25.0%
! GAAAATAATTCAAATGTGAC+TGG + chr3_4:67897277-67897296 Msa0516370:three_prime_UTR 25.0%
! TTTTTCTCAACTTCAACATG+TGG - chr3_4:67894076-67894095 None:intergenic 30.0%
ATTGTTGAAACTATGCTTCA+AGG + chr3_4:67894106-67894125 Msa0516370:CDS 30.0%
GTTCAAAAGGAAGTGATAAA+TGG + chr3_4:67894163-67894182 Msa0516370:CDS 30.0%
TCAAAAGGAAGTGATAAATG+GGG + chr3_4:67894165-67894184 Msa0516370:CDS 30.0%
GAATCAGAAATTGAAGGAAA+TGG + chr3_4:67894402-67894421 Msa0516370:CDS 30.0%
AGATAAGAAGATTGAAGAAG+AGG + chr3_4:67894444-67894463 Msa0516370:CDS 30.0%
GATGGTTCAGAAATTAACTT+TGG + chr3_4:67894714-67894733 Msa0516370:CDS 30.0%
TGCAAAATTTCACAAGGATT+TGG + chr3_4:67894741-67894760 Msa0516370:CDS 30.0%
GAAAGAGGTTAAGTTATCAA+AGG + chr3_4:67894837-67894856 Msa0516370:CDS 30.0%
TTAAGTTATCAAAGGCTAGA+AGG + chr3_4:67894845-67894864 Msa0516370:CDS 30.0%
CATAAGTCTTCATTTCTTTG+TGG - chr3_4:67895078-67895097 None:intergenic 30.0%
AGACAGTTTGTGAAAACTTA+TGG - chr3_4:67895356-67895375 None:intergenic 30.0%
! ACCAATTTGCTTCAAAATTG+AGG + chr3_4:67895803-67895822 Msa0516370:CDS 30.0%
!! TTGTTTCTAAAGCAGTTTGA+AGG - chr3_4:67895829-67895848 None:intergenic 30.0%
! TGAGTAATTTCTGAAGATTG+CGG - chr3_4:67895865-67895884 None:intergenic 30.0%
TGAAAAACAGCTAGAAATGA+TGG + chr3_4:67895930-67895949 Msa0516370:CDS 30.0%
! AATGATGGAAACTTTGATTG+AGG + chr3_4:67895945-67895964 Msa0516370:CDS 30.0%
GTCAAATTGATCATGATTCA+AGG - chr3_4:67895995-67896014 None:intergenic 30.0%
! AAGAAGAAAAGCATGTTTGT+CGG + chr3_4:67896055-67896074 Msa0516370:CDS 30.0%
ATTCTAATTGAAAGGTTGAC+AGG + chr3_4:67896252-67896271 Msa0516370:CDS 30.0%
ATTAGTGAAGATAGCAAAGT+TGG + chr3_4:67896303-67896322 Msa0516370:CDS 30.0%
!! TATTTTTATGCCTTCTGCAT+TGG + chr3_4:67896441-67896460 Msa0516370:intron 30.0%
!! TATTTTTATGCCTTCTGCAT+TGG + chr3_4:67896441-67896460 Msa0516370:intron 30.0%
TTTGCAATACCAAATGAAGT+TGG - chr3_4:67896739-67896758 None:intergenic 30.0%
!!! ATCAACACTAGAGCATTTTT+TGG + chr3_4:67896860-67896879 Msa0516370:CDS 30.0%
CAAAGATATATTGTTGCAAC+AGG + chr3_4:67896900-67896919 Msa0516370:CDS 30.0%
!! AAGATTGTTTCTGGATTTGT+TGG + chr3_4:67896948-67896967 Msa0516370:CDS 30.0%
! AACGATTTTCTGACAGTATA+AGG + chr3_4:67897012-67897031 Msa0516370:CDS 30.0%
TTCAAAGAGGTTTAGAAGTT+CGG + chr3_4:67897051-67897070 Msa0516370:CDS 30.0%
AAGGAATGATATGTTTGAGA+AGG + chr3_4:67897117-67897136 Msa0516370:CDS 30.0%
ACAAATAAACACTTGAGGAA+AGG - chr3_4:67897181-67897200 None:intergenic 30.0%
!! CAACAATGTGAGATTTTGAT+TGG + chr3_4:67897361-67897380 Msa0516370:three_prime_UTR 30.0%
GATTGTGTGGAAAGTTCAAA+AGG + chr3_4:67894150-67894169 Msa0516370:CDS 35.0%
CAAAAGGAAGTGATAAATGG+GGG + chr3_4:67894166-67894185 Msa0516370:CDS 35.0%
TCAGAAATTGAAGGAAATGG+AGG + chr3_4:67894405-67894424 Msa0516370:CDS 35.0%
CAGAAATTGAAGGAAATGGA+GGG + chr3_4:67894406-67894425 Msa0516370:CDS 35.0%
AGAAGAGGAGAAAAAGAGAA+AGG + chr3_4:67894459-67894478 Msa0516370:CDS 35.0%
!! AGAGGAACTTATTTCTGTCA+TGG + chr3_4:67894669-67894688 Msa0516370:CDS 35.0%
GGAGATTGCAAAATTTCACA+AGG + chr3_4:67894735-67894754 Msa0516370:CDS 35.0%
! AGATTTTGTCAGCAATGTTG+AGG + chr3_4:67894776-67894795 Msa0516370:CDS 35.0%
AAAGCAAATGCTGTTGAAAG+AGG + chr3_4:67894822-67894841 Msa0516370:CDS 35.0%
!! GATGAACTTGAGTTCTAGAA+AGG + chr3_4:67894948-67894967 Msa0516370:CDS 35.0%
AGACCAAATAGGAGACAAAA+GGG - chr3_4:67895482-67895501 None:intergenic 35.0%
ATGCTAAACGTTTGGAAGAT+TGG + chr3_4:67895518-67895537 Msa0516370:CDS 35.0%
TGCTAAACGTTTGGAAGATT+GGG + chr3_4:67895519-67895538 Msa0516370:CDS 35.0%
ATGCAACTCTGATTGAACAA+AGG + chr3_4:67895563-67895582 Msa0516370:CDS 35.0%
! ATGCTTTTGCAGAACAAATG+AGG + chr3_4:67895602-67895621 Msa0516370:CDS 35.0%
GATCAAAGATGAGAAGTTAG+AGG + chr3_4:67895624-67895643 Msa0516370:CDS 35.0%
!! ATGAGAAGTTAGAGGCATTT+AGG + chr3_4:67895632-67895651 Msa0516370:CDS 35.0%
GAGACATGACAAGATGAAAT+TGG + chr3_4:67895735-67895754 Msa0516370:CDS 35.0%
GAAATTGGAGAGCTTATTGT+TGG + chr3_4:67895750-67895769 Msa0516370:CDS 35.0%
!!! GCCTCAATTTTGAAGCAAAT+TGG - chr3_4:67895807-67895826 None:intergenic 35.0%
AAATTACTCAAGATCCTGTC+TGG + chr3_4:67895875-67895894 Msa0516370:CDS 35.0%
AAGATTGTGAAGAGAAAACC+AGG + chr3_4:67895907-67895926 Msa0516370:CDS 35.0%
!!! ATTTCTAGCTGTTTTTCACC+TGG - chr3_4:67895928-67895947 None:intergenic 35.0%
GATTGAGGAAGTTTGTGAAA+AGG + chr3_4:67895960-67895979 Msa0516370:CDS 35.0%
! AGAAGAAAAGCATGTTTGTC+GGG + chr3_4:67896056-67896075 Msa0516370:CDS 35.0%
GCATCAATTTCTCTGTGATT+TGG - chr3_4:67896114-67896133 None:intergenic 35.0%
ATTGATGCTGCTGAAAAGAT+AGG + chr3_4:67896126-67896145 Msa0516370:CDS 35.0%
ATGATGCAAAACAATTCCAG+TGG + chr3_4:67896169-67896188 Msa0516370:CDS 35.0%
AAAACAATTCCAGTGGAAGA+TGG + chr3_4:67896176-67896195 Msa0516370:CDS 35.0%
GAGTATCTTACAAGATCAAG+AGG + chr3_4:67896214-67896233 Msa0516370:CDS 35.0%
TACTTGTGTCCAACTTCATT+TGG + chr3_4:67896727-67896746 Msa0516370:intron 35.0%
!!! AACACTAGAGCATTTTTTGG+AGG + chr3_4:67896863-67896882 Msa0516370:CDS 35.0%
CTATTCCATGAAGTTCAAAG+AGG + chr3_4:67897038-67897057 Msa0516370:CDS 35.0%
CTAAACCTCTTTGAACTTCA+TGG - chr3_4:67897046-67897065 None:intergenic 35.0%
AGAATTATAGGTGACCTTGA+GGG + chr3_4:67897080-67897099 Msa0516370:CDS 35.0%
GTTTGAGAAGGTAGCAATAA+TGG + chr3_4:67897129-67897148 Msa0516370:exon 35.0%
!! AAAGCTGAAAAGTGCTGAGA+TGG + chr3_4:67894195-67894214 Msa0516370:CDS 40.0%
! AAAGCTGGTTTAGCGAAAGA+AGG + chr3_4:67894299-67894318 Msa0516370:CDS 40.0%
AGGAAACTTCGACAACAGAT+TGG + chr3_4:67894319-67894338 Msa0516370:CDS 40.0%
ATTGAAGGAAATGGAGGGTT+TGG + chr3_4:67894411-67894430 Msa0516370:CDS 40.0%
GAGAAAGGAGCTAGAAGAAA+AGG + chr3_4:67894474-67894493 Msa0516370:CDS 40.0%
AGAGAATCTGCTAAACGTGA+AGG + chr3_4:67894529-67894548 Msa0516370:CDS 40.0%
!! AAGAGCATTCTTCTGATCTC+AGG + chr3_4:67894554-67894573 Msa0516370:CDS 40.0%
CAAAACTGCTTTCATTGAGC+TGG + chr3_4:67894582-67894601 Msa0516370:CDS 40.0%
GTTCAGCTTCAAGATGTCTT+TGG - chr3_4:67894615-67894634 None:intergenic 40.0%
AGACATCTTGAAGCTGAACT+CGG + chr3_4:67894616-67894635 Msa0516370:CDS 40.0%
GCATTTGGATGCTACAAAAG+AGG + chr3_4:67894651-67894670 Msa0516370:CDS 40.0%
TTCTGTCATGGAGAACAAAG+AGG + chr3_4:67894681-67894700 Msa0516370:CDS 40.0%
! CAAAGAGGAGTCTGATTTGA+TGG + chr3_4:67894696-67894715 Msa0516370:CDS 40.0%
ATGCAGCATAGTTCTTCAAC+AGG + chr3_4:67894994-67895013 Msa0516370:intron 40.0%
GGCAAGTAGTGATCAGAAAT+AGG - chr3_4:67895057-67895076 None:intergenic 40.0%
! TGACCCTTTTGTCTCCTATT+TGG + chr3_4:67895476-67895495 Msa0516370:intron 40.0%
GAGACCAAATAGGAGACAAA+AGG - chr3_4:67895483-67895502 None:intergenic 40.0%
ACGTTTAGCATTAGCAGGAA+TGG - chr3_4:67895509-67895528 None:intergenic 40.0%
TCCTGCTAATGCTAAACGTT+TGG + chr3_4:67895510-67895529 Msa0516370:CDS 40.0%
TCCAAACGTTTAGCATTAGC+AGG - chr3_4:67895514-67895533 None:intergenic 40.0%
!! AGAAGTTAGAGGCATTTAGG+TGG + chr3_4:67895635-67895654 Msa0516370:CDS 40.0%
TGAGGAAGTTTGTGAAAAGG+AGG + chr3_4:67895963-67895982 Msa0516370:CDS 40.0%
TTTGGACTTTGATACTGCAC+AGG - chr3_4:67896096-67896115 None:intergenic 40.0%
! AAAGATCGTCGGTCTTTTCT+TGG - chr3_4:67896392-67896411 None:intergenic 40.0%
CATTCGTTTGCAAAGATCGT+CGG - chr3_4:67896403-67896422 None:intergenic 40.0%
TGGTATTGCAAAGTTGAGCA+TGG + chr3_4:67896747-67896766 Msa0516370:intron 40.0%
GGTATTGCAAAGTTGAGCAT+GGG + chr3_4:67896748-67896767 Msa0516370:intron 40.0%
AATGTCCTCTATGCAAATCG+CGG + chr3_4:67896804-67896823 Msa0516370:CDS 40.0%
!! TGTTTCTGGATTTGTTGGAG+TGG + chr3_4:67896953-67896972 Msa0516370:CDS 40.0%
CTCAAGGTCACCTATAATTC+TGG - chr3_4:67897081-67897100 None:intergenic 40.0%
CAGAATTATAGGTGACCTTG+AGG + chr3_4:67897079-67897098 Msa0516370:CDS 40.0%
GCATGTTATCCAAGACACTT+AGG + chr3_4:67897395-67897414 Msa0516370:three_prime_UTR 40.0%
!! TCAAGGAAGTGCACAGCTTT+TGG + chr3_4:67894123-67894142 Msa0516370:CDS 45.0%
!! CAAGGAAGTGCACAGCTTTT+GGG + chr3_4:67894124-67894143 Msa0516370:CDS 45.0%
!! AAGGAAGTGCACAGCTTTTG+GGG + chr3_4:67894125-67894144 Msa0516370:CDS 45.0%
!!! AGCTTTTGGGGTTGATTGTG+TGG + chr3_4:67894137-67894156 Msa0516370:CDS 45.0%
TTGCTGCACAAGAACAAAGC+TGG + chr3_4:67894284-67894303 Msa0516370:CDS 45.0%
GAAGCATGCTGAGCATGAAA+CGG + chr3_4:67894867-67894886 Msa0516370:CDS 45.0%
CTGAGCATGAAACGGAAAAG+TGG + chr3_4:67894875-67894894 Msa0516370:CDS 45.0%
AAGTGGAGAGAAGCTTCAGA+AGG + chr3_4:67894892-67894911 Msa0516370:CDS 45.0%
! GATGTTTTCCCTAGTGCAAG+AGG + chr3_4:67894970-67894989 Msa0516370:CDS 45.0%
GGAATGGCTAGAGACCAAAT+AGG - chr3_4:67895493-67895512 None:intergenic 45.0%
AAAGCAGCTTCAGTCACACT+TGG + chr3_4:67895684-67895703 Msa0516370:CDS 45.0%
GAGCTTATTGTTGGAGAGAG+TGG + chr3_4:67895759-67895778 Msa0516370:CDS 45.0%
ATCTTGACTCTAGACCAGAC+AGG - chr3_4:67895892-67895911 None:intergenic 45.0%
! AGAAAAGCATGTTTGTCGGG+AGG + chr3_4:67896059-67896078 Msa0516370:CDS 45.0%
CTTTGATACTGCACAGGAGT+AGG - chr3_4:67896090-67896109 None:intergenic 45.0%
CATGAAGATCCATCTTCCAC+TGG - chr3_4:67896188-67896207 None:intergenic 45.0%
AAGATGGATCTTCATGCGCT+TGG + chr3_4:67896192-67896211 Msa0516370:CDS 45.0%
CGACGATCTTTGCAAACGAA+TGG + chr3_4:67896401-67896420 Msa0516370:CDS 45.0%
TGATTAGACGCCAATGCAGA+AGG - chr3_4:67896454-67896473 None:intergenic 45.0%
ACATTAGACGCCAATGCAGA+AGG - chr3_4:67896501-67896520 None:intergenic 45.0%
! TGAGTCGTGTGAGTCCTTTT+TGG + chr3_4:67896636-67896655 Msa0516370:intron 45.0%
! GAAGAGATGGAGAAAAGTGC+TGG + chr3_4:67896978-67896997 Msa0516370:CDS 45.0%
GTTCGGACAGCCAGAATTAT+AGG + chr3_4:67897068-67897087 Msa0516370:CDS 45.0%
!! AAAAAAAAAAAAAAACTAAA+CGG + chr3_4:67897304-67897323 Msa0516370:three_prime_UTR 5.0%
GGAAGTGATAAATGGGGGAG+AGG + chr3_4:67894171-67894190 Msa0516370:CDS 50.0%
GAAGGAAATGGAGGGTTTGG+TGG + chr3_4:67894414-67894433 Msa0516370:CDS 50.0%
! CGGTCGTGCTGTTAAGCATT+TGG + chr3_4:67894636-67894655 Msa0516370:CDS 50.0%
CAGCTTCAGTCACACTTGGA+GGG + chr3_4:67895688-67895707 Msa0516370:CDS 50.0%
TCAGTCACACTTGGAGGGAT+TGG + chr3_4:67895693-67895712 Msa0516370:CDS 50.0%
! ACACTTGGAGGGATTGGTGA+AGG + chr3_4:67895699-67895718 Msa0516370:CDS 50.0%
GTTCTCCGCGATTTGCATAG+AGG - chr3_4:67896812-67896831 None:intergenic 50.0%
TGTTGGAGTGGCAGAAGAGA+TGG + chr3_4:67896965-67896984 Msa0516370:CDS 50.0%
AGGTGACCTTGAGGGAACAT+TGG + chr3_4:67897088-67897107 Msa0516370:CDS 50.0%
!! GGAAATGGAGGGTTTGGTGG+AGG + chr3_4:67894417-67894436 Msa0516370:CDS 55.0%
GCTGCATGCCTCTTGCACTA+GGG - chr3_4:67894981-67895000 None:intergenic 55.0%
TGCTGCATGCCTCTTGCACT+AGG - chr3_4:67894982-67895001 None:intergenic 55.0%
GGGTGAGAGCTGAGACAGAA+AGG + chr3_4:67895539-67895558 Msa0516370:CDS 55.0%
GCAGCTTCAGTCACACTTGG+AGG + chr3_4:67895687-67895706 Msa0516370:CDS 55.0%
CACGAGCCAATGTTCCCTCA+AGG - chr3_4:67897097-67897116 None:intergenic 55.0%
!! GAGGGAACATTGGCTCGTGA+AGG + chr3_4:67897098-67897117 Msa0516370:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 67893965 67897424 67893965 ID=Msa0516370;Name=Msa0516370
chr3_4 mRNA 67893965 67897424 67893965 ID=Msa0516370-mRNA-1;Parent=Msa0516370;Name=Msa0516370-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.5|0.66|1|1|1|3|282|766
chr3_4 exon 67893965 67895003 67893965 ID=Msa0516370-mRNA-1:exon:17805;Parent=Msa0516370-mRNA-1
chr3_4 exon 67895506 67896422 67895506 ID=Msa0516370-mRNA-1:exon:17806;Parent=Msa0516370-mRNA-1
chr3_4 exon 67896798 67897424 67896798 ID=Msa0516370-mRNA-1:exon:17807;Parent=Msa0516370-mRNA-1
chr3_4 CDS 67893965 67895003 67893965 ID=Msa0516370-mRNA-1:cds;Parent=Msa0516370-mRNA-1
chr3_4 CDS 67895506 67896422 67895506 ID=Msa0516370-mRNA-1:cds;Parent=Msa0516370-mRNA-1
chr3_4 CDS 67896798 67897142 67896798 ID=Msa0516370-mRNA-1:cds;Parent=Msa0516370-mRNA-1
chr3_4 three_prime_UTR 67897143 67897424 67897143 ID=Msa0516370-mRNA-1:three_prime_utr;Parent=Msa0516370-mRNA-1
Gene Sequence

>Msa0516370

ATGGATAGAATTGTGTATAAAAAGAGTGATAATATTGATGATGATGGAATGTATCCAATATATTTTGGTGTTTCTTGTGCATTCTTAGCACTTCAAGTTATTAGAAAACCACATGTTGAAGTTGAGAAAAATTTGACTGAAATTGTTGAAACTATGCTTCAAGGAAGTGCACAGCTTTTGGGGTTGATTGTGTGGAAAGTTCAAAAGGAAGTGATAAATGGGGGAGAGGAAAAGCTGAAAAGTGCTGAGATGGAAATTGAGAATTTGAAAAAGATAAGACATGAAGATGCAAAAGCAAATGAAAAAGTTGTAGGGATTTTTGCTGCACAAGAACAAAGCTGGTTTAGCGAAAGAAGGAAACTTCGACAACAGATTGGTGCTCTATTGAACGAGTTAAGAGTGTTTGAGAAAAAAAGGGACTTAGCTATATCTGAATTGAATCAGAAATTGAAGGAAATGGAGGGTTTGGTGGAGGAAAAAGATAAGAAGATTGAAGAAGAGGAGAAAAAGAGAAAGGAGCTAGAAGAAAAGGCGAAAAAAGCTGAAAAAGATGCAGAAGAATTGAGAGAATCTGCTAAACGTGAAGGTCAAGAGCATTCTTCTGATCTCAGGAAACACAAAACTGCTTTCATTGAGCTGGTTTCTAACCAAAGACATCTTGAAGCTGAACTCGGTCGTGCTGTTAAGCATTTGGATGCTACAAAAGAGGAACTTATTTCTGTCATGGAGAACAAAGAGGAGTCTGATTTGATGGTTCAGAAATTAACTTTGGAGATTGCAAAATTTCACAAGGATTTGGAACAAAAAGATAAGATTTTGTCAGCAATGTTGAGGAAATCTAAACTTGATACTGCAGAAAAGCAAATGCTGTTGAAAGAGGTTAAGTTATCAAAGGCTAGAAGGAAGCATGCTGAGCATGAAACGGAAAAGTGGAGAGAAGCTTCAGAAGGAAAACATGACAGACATTCCTTTAAAAATATGTTGATGAACTTGAGTTCTAGAAAGGATGTTTTCCCTAGTGCAAGAGGCATGCAGCATACCATTCCTGCTAATGCTAAACGTTTGGAAGATTGGGTGAGAGCTGAGACAGAAAGGTATGCAACTCTGATTGAACAAAGGCATCACATAGAGTTAGATGCTTTTGCAGAACAAATGAGGATCAAAGATGAGAAGTTAGAGGCATTTAGGTGGCAATTGTTGAGAACAGAATTAGAAACAAAGCAGCTTCAGTCACACTTGGAGGGATTGGTGAAGGATGTGACACAGCTGAGACATGACAAGATGAAATTGGAGAGCTTATTGTTGGAGAGAGTGGATGAAATTAATTCTCTGAAAGACCAATTTGCTTCAAAATTGAGGCCTTCAAACTGCTTTAGAAACAACTCTAATCTGTCTCCGCAATCTTCAGAAATTACTCAAGATCCTGTCTGGTCTAGAGTCAAGATTGTGAAGAGAAAACCAGGTGAAAAACAGCTAGAAATGATGGAAACTTTGATTGAGGAAGTTTGTGAAAAGGAGGTGCAGCCCTTGAATCATGATCAATTTGACGATGAGAATTCACAAGTTCAATCTCCAGAAAATAAGATTGAAGAAGAAAAGCATGTTTGTCGGGAGGATAATCCTACTCCTGTGCAGTATCAAAGTCCAAATCACAGAGAAATTGATGCTGCTGAAAAGATAGGTTCTACTAGCAAGCCCTTTAATGATGCAAAACAATTCCAGTGGAAGATGGATCTTCATGCGCTTGGAGTATCTTACAAGATCAAGAGGCTTAAGCAGCAACTAATTCTAATTGAAAGGTTGACAGGAATGCAAAACAATGATGAACATTCAGAAATTAGTGAAGATAGCAAAGTTGGTATGAAGACTTATCTTTCCTTGATTACTTTGCTGAATAAACAAATTGGAAGATATCAATCTCTCCAAGAAAAGACCGACGATCTTTGCAAACGAATGCAAGAGAATGTCCTCTATGCAAATCGCGGAGAACTGAATAATGCAAGAAAAAAGGAGAAAACATCAACACTAGAGCATTTTTTGGAGGAGACATTTCAATTACAAAGATATATTGTTGCAACAGGACAAAAATTGTTTGAAATTCAATCAAAGATTGTTTCTGGATTTGTTGGAGTGGCAGAAGAGATGGAGAAAAGTGCTGGAATTGACATGAAACGATTTTCTGACAGTATAAGGAATCTATTCCATGAAGTTCAAAGAGGTTTAGAAGTTCGGACAGCCAGAATTATAGGTGACCTTGAGGGAACATTGGCTCGTGAAGGAATGATATGTTTGAGAAGGTAG

Protein sequence

>Msa0516370

MDRIVYKKSDNIDDDGMYPIYFGVSCAFLALQVIRKPHVEVEKNLTEIVETMLQGSAQLLGLIVWKVQKEVINGGEEKLKSAEMEIENLKKIRHEDAKANEKVVGIFAAQEQSWFSERRKLRQQIGALLNELRVFEKKRDLAISELNQKLKEMEGLVEEKDKKIEEEEKKRKELEEKAKKAEKDAEELRESAKREGQEHSSDLRKHKTAFIELVSNQRHLEAELGRAVKHLDATKEELISVMENKEESDLMVQKLTLEIAKFHKDLEQKDKILSAMLRKSKLDTAEKQMLLKEVKLSKARRKHAEHETEKWREASEGKHDRHSFKNMLMNLSSRKDVFPSARGMQHTIPANAKRLEDWVRAETERYATLIEQRHHIELDAFAEQMRIKDEKLEAFRWQLLRTELETKQLQSHLEGLVKDVTQLRHDKMKLESLLLERVDEINSLKDQFASKLRPSNCFRNNSNLSPQSSEITQDPVWSRVKIVKRKPGEKQLEMMETLIEEVCEKEVQPLNHDQFDDENSQVQSPENKIEEEKHVCREDNPTPVQYQSPNHREIDAAEKIGSTSKPFNDAKQFQWKMDLHALGVSYKIKRLKQQLILIERLTGMQNNDEHSEISEDSKVGMKTYLSLITLLNKQIGRYQSLQEKTDDLCKRMQENVLYANRGELNNARKKEKTSTLEHFLEETFQLQRYIVATGQKLFEIQSKIVSGFVGVAEEMEKSAGIDMKRFSDSIRNLFHEVQRGLEVRTARIIGDLEGTLAREGMICLRR*