Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0334030 | XP_013464773.1 | 92.045 | 88 | 7 | 0 | 1 | 88 | 1 | 88 | 2.73e-54 | 175 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0229150 | Msa0334030 | 0.815592 | 8.544807e-52 | -8.615850e-47 |
| Msa0333910 | Msa0334030 | 0.931975 | 1.700789e-94 | -8.615850e-47 |
| Msa0334030 | Msa0481850 | 0.820420 | 6.923348e-53 | -8.615850e-47 |
| Msa0334030 | Msa0591050 | 0.828283 | 9.797785e-55 | -8.615850e-47 |
| Msa0334030 | Msa0705800 | 0.824181 | 9.275867e-54 | -8.615850e-47 |
| Msa0334030 | Msa0712610 | 0.817444 | 3.286941e-52 | -8.615850e-47 |
| Msa0334030 | Msa0766080 | 0.818619 | 1.783111e-52 | -8.615850e-47 |
| Msa0334030 | Msa0781080 | 0.818167 | 2.257400e-52 | -8.615850e-47 |
| Msa0334030 | Msa0822580 | 0.835604 | 1.523071e-56 | -8.615850e-47 |
| Msa0334030 | Msa0827380 | 0.800958 | 1.128888e-48 | -8.615850e-47 |
| Msa0334030 | Msa0861320 | 0.802969 | 4.358411e-49 | -8.615850e-47 |
| Msa0334030 | Msa1037290 | 0.805991 | 1.021820e-49 | -8.615850e-47 |
| Msa0334030 | Msa1080350 | 0.808207 | 3.468357e-50 | -8.615850e-47 |
| Msa0334030 | Msa1125860 | 0.800403 | 1.465388e-48 | -8.615850e-47 |
| Msa0334030 | Msa1126060 | 0.803269 | 3.778521e-49 | -8.615850e-47 |
| Msa0334030 | Msa1126520 | 0.849252 | 3.643700e-60 | -8.615850e-47 |
| Msa0334030 | Msa1164150 | 0.806197 | 9.244965e-50 | -8.615850e-47 |
| Msa0334030 | Msa1165640 | 0.803824 | 2.898307e-49 | -8.615850e-47 |
| Msa0334030 | Msa1356790 | 0.808440 | 3.093456e-50 | -8.615850e-47 |
| Msa0334030 | Msa1368920 | 0.804861 | 1.762822e-49 | -8.615850e-47 |
| Msa0334030 | Msa1374240 | 0.810539 | 1.096391e-50 | -8.615850e-47 |
| Msa0334030 | Msa1403910 | 0.807107 | 5.941694e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0334030 | MtrunA17_Chr2g0318351 | 92.045 | 88 | 7 | 0 | 1 | 88 | 1 | 88 | 2.51e-58 | 175 |
| Msa0334030 | MtrunA17_Chr4g0022541 | 61.905 | 84 | 29 | 1 | 9 | 89 | 6 | 89 | 6.04e-34 | 113 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0334030 | AT2G20820.1 | 52.439 | 82 | 35 | 1 | 8 | 85 | 5 | 86 | 1.23e-25 | 92.8 |
| Msa0334030 | AT2G20820.2 | 41.667 | 60 | 31 | 1 | 8 | 63 | 5 | 64 | 5.71e-11 | 55.8 |
Find 97 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAATTAGCTTACCGAAAT+TGG | 0.139317 | 2_4:-52103411 | Msa0334030:three_prime_UTR |
| TGTGACTTGTATTTCAAATT+AGG | 0.183116 | 2_4:-52104012 | Msa0334030:three_prime_UTR |
| TTAATTGTTAATTTGTTAAT+TGG | 0.254008 | 2_4:-52104163 | Msa0334030:three_prime_UTR |
| ATGAACGAGTGAAGCGGATT+TGG | 0.264875 | 2_4:+52105893 | None:intergenic |
| GATGGAGAAGAGTAATAGTT+AGG | 0.282552 | 2_4:+52104340 | None:intergenic |
| TGTTCTTCTTTCCACTTAGA+TGG | 0.309402 | 2_4:+52105271 | None:intergenic |
| TTGTGAAGAGAAGCCAGTTT+TGG | 0.313013 | 2_4:-52103575 | Msa0334030:three_prime_UTR |
| TGTGTTTGCAGCTGTGTATT+TGG | 0.328090 | 2_4:+52104313 | None:intergenic |
| GCTGATCCAGGCGCGATTGC+GGG | 0.328692 | 2_4:-52104445 | Msa0334030:exon |
| CTAATAAAATTGCCCAAAAC+TGG | 0.335881 | 2_4:+52103562 | None:intergenic |
| TTTGCATAGCACTTGAAGTA+TGG | 0.341942 | 2_4:-52103534 | Msa0334030:three_prime_UTR |
| TCCTGCCAAATGTTCACCTT+TGG | 0.375750 | 2_4:+52105304 | None:intergenic |
| TGAACGAGTGAAGCGGATTT+GGG | 0.376003 | 2_4:+52105894 | None:intergenic |
| TAGCACTTGAAGTATGGTTT+AGG | 0.377916 | 2_4:-52103528 | Msa0334030:three_prime_UTR |
| TACCGGCGTTATCGCGGCGC+GGG | 0.382131 | 2_4:-52104527 | Msa0334030:CDS |
| TTTGTTACTTTAAGCTTTGG+AGG | 0.384837 | 2_4:-52104105 | Msa0334030:three_prime_UTR |
| TTTGTGATTGCTTCTTTGAC+TGG | 0.396668 | 2_4:-52104764 | Msa0334030:CDS |
| CGCGGCATGGCTGGTTCCTC+CGG | 0.398709 | 2_4:-52105867 | Msa0334030:intron |
| TTGTTAATTTGTTAATTGGC+AGG | 0.400746 | 2_4:-52104159 | Msa0334030:three_prime_UTR |
| ACGCGTAGCGGACGCTATTT+CGG | 0.402730 | 2_4:+52103893 | None:intergenic |
| TGTTATGTGTTATTGTCTCT+TGG | 0.403590 | 2_4:-52103476 | Msa0334030:three_prime_UTR |
| TTGGAGAAAGCGGCTGATCC+AGG | 0.406216 | 2_4:-52104457 | Msa0334030:exon |
| TAATAAGTTGCAACAGTTTG+TGG | 0.408408 | 2_4:-52103453 | Msa0334030:three_prime_UTR |
| GTTCATCGCCGCGGCATGGC+TGG | 0.417524 | 2_4:-52105876 | Msa0334030:CDS |
| GAACTCCAAAGGTGAACATT+TGG | 0.428445 | 2_4:-52105309 | Msa0334030:CDS |
| TGATTGCTTCTTTGACTGGA+TGG | 0.428585 | 2_4:-52104760 | Msa0334030:CDS |
| GCGCTACAAGGCGGAGCGCT+TGG | 0.430725 | 2_4:-52104476 | Msa0334030:CDS |
| GCAATCATGACATGAGTCAT+AGG | 0.431140 | 2_4:+52103356 | None:intergenic |
| GATGAGATGAGAAGAGGAGA+TGG | 0.431439 | 2_4:+52104262 | None:intergenic |
| GCAGTTGTTATTAAAATCTC+AGG | 0.431871 | 2_4:+52103633 | None:intergenic |
| CGCCGCGATAACGCCGGTAG+TGG | 0.447497 | 2_4:+52104531 | None:intergenic |
| TAAAATACTAATAAAATTCA+AGG | 0.449932 | 2_4:+52104066 | None:intergenic |
| CGAAGAGAGGAGAACAAAGA+TGG | 0.452734 | 2_4:+52104221 | None:intergenic |
| CAGAAATGCGGCGCGGGATG+CGG | 0.454183 | 2_4:+52103870 | None:intergenic |
| CTGCTAAGAAGTTGCTGTCC+GGG | 0.461803 | 2_4:-52103614 | Msa0334030:three_prime_UTR |
| ATGGAGAAGAGTAATAGTTA+GGG | 0.464154 | 2_4:+52104341 | None:intergenic |
| ACTGCTAAGAAGTTGCTGTC+CGG | 0.471708 | 2_4:-52103615 | Msa0334030:three_prime_UTR |
| CGCGGGATGCGGACGCGTAG+CGG | 0.475793 | 2_4:+52103881 | None:intergenic |
| TTAAAATCTCAGGCCTTGCT+TGG | 0.475998 | 2_4:+52103643 | None:intergenic |
| GGATGGACTTTACTCTTCTA+CGG | 0.478552 | 2_4:-52104743 | Msa0334030:CDS |
| TTTATACCCGCAATCGCGCC+TGG | 0.480732 | 2_4:+52104439 | None:intergenic |
| GGAACGATGCGGGTCAAAGC+GGG | 0.481523 | 2_4:-52104413 | Msa0334030:three_prime_UTR |
| ACTCGTTCATCGCCGCGGCA+TGG | 0.488087 | 2_4:-52105880 | Msa0334030:CDS |
| GGCGTTATCGCGGCGCGGGG+CGG | 0.490470 | 2_4:-52104523 | Msa0334030:CDS |
| GGCGGAGCGCTTGGAGAAAG+CGG | 0.496259 | 2_4:-52104467 | Msa0334030:CDS |
| TAAGCTAATTTATCAGCAGC+CGG | 0.501898 | 2_4:+52103421 | None:intergenic |
| TGTTAATTTGTTAATTGGCA+GGG | 0.510648 | 2_4:-52104158 | Msa0334030:three_prime_UTR |
| ATCAATCGATCAATCAATCA+TGG | 0.512289 | 2_4:-52105970 | Msa0334030:exon |
| CGCGATTGCGGGTATAAAGC+GGG | 0.516561 | 2_4:-52104434 | Msa0334030:three_prime_UTR |
| GCTTTGGAGGCTTAAAGTGT+TGG | 0.517216 | 2_4:-52104092 | Msa0334030:three_prime_UTR |
| TCAAAGCAGAAATGCGGCGC+GGG | 0.518059 | 2_4:+52103864 | None:intergenic |
| GGTGGTTACAAGTTCTTCAC+TGG | 0.518333 | 2_4:-52104722 | Msa0334030:CDS |
| GTATAAAGCGGGAACGATGC+GGG | 0.519669 | 2_4:-52104423 | Msa0334030:three_prime_UTR |
| GGCTGATCCAGGCGCGATTG+CGG | 0.524217 | 2_4:-52104446 | Msa0334030:exon |
| GCCCCGCGCCGCGATAACGC+CGG | 0.524566 | 2_4:+52104525 | None:intergenic |
| AAGCTAATTTATCAGCAGCC+GGG | 0.527728 | 2_4:+52103422 | None:intergenic |
| AGCTGTGTATTTGGTTCAGA+TGG | 0.534040 | 2_4:+52104322 | None:intergenic |
| AGAGATGATGAGATGAGAAG+AGG | 0.537856 | 2_4:+52104256 | None:intergenic |
| TCCAAAGGTGAACATTTGGC+AGG | 0.544619 | 2_4:-52105305 | Msa0334030:CDS |
| AAACGCGACGCAGCGCTACA+AGG | 0.552023 | 2_4:-52104488 | Msa0334030:CDS |
| GAGTGAAGCGGATTTGGGTG+AGG | 0.556913 | 2_4:+52105899 | None:intergenic |
| TTGTCAATAGCAACCACTAC+CGG | 0.558615 | 2_4:-52104544 | Msa0334030:CDS |
| TGTTGCATTGTAGATCCTCA+TGG | 0.559182 | 2_4:-52105331 | Msa0334030:intron |
| CACTGGTGGCAAGAAGGAAG+AGG | 0.561461 | 2_4:-52104705 | Msa0334030:intron |
| GAAGAGAGGAGAACAAAGAT+GGG | 0.569521 | 2_4:+52104222 | None:intergenic |
| GTTCTTCACTGGTGGCAAGA+AGG | 0.577858 | 2_4:-52104711 | Msa0334030:CDS |
| ACCGGCGTTATCGCGGCGCG+GGG | 0.583101 | 2_4:-52104526 | Msa0334030:CDS |
| CGGCGTGGACAGCAGCAGCT+CGG | 0.586707 | 2_4:-52105947 | Msa0334030:CDS |
| ATCCACTGTCTCCATCTAAG+TGG | 0.589737 | 2_4:-52105282 | Msa0334030:CDS |
| GAAGGTTGCAGAACCAAGCA+AGG | 0.595991 | 2_4:-52103656 | Msa0334030:three_prime_UTR |
| AGCTAATTTATCAGCAGCCG+GGG | 0.597986 | 2_4:+52103423 | None:intergenic |
| GGTATAAAGCGGGAACGATG+CGG | 0.601207 | 2_4:-52104424 | Msa0334030:three_prime_UTR |
| CGGAGGAACCAGCCATGCCG+CGG | 0.602802 | 2_4:+52105868 | None:intergenic |
| TGGACTTTACTCTTCTACGG+TGG | 0.603616 | 2_4:-52104740 | Msa0334030:CDS |
| CTACCGGCGTTATCGCGGCG+CGG | 0.608624 | 2_4:-52104528 | Msa0334030:CDS |
| TTCCACTTAGATGGAGACAG+TGG | 0.611790 | 2_4:+52105280 | None:intergenic |
| GGGAACGATGCGGGTCAAAG+CGG | 0.614326 | 2_4:-52104414 | Msa0334030:three_prime_UTR |
| CGCGACGCAGCGCTACAAGG+CGG | 0.614415 | 2_4:-52104485 | Msa0334030:CDS |
| CAAAACATTAACAATTAACA+AGG | 0.619550 | 2_4:+52104132 | None:intergenic |
| GGTTACAAGTTCTTCACTGG+TGG | 0.620304 | 2_4:-52104719 | Msa0334030:CDS |
| CAGTTTGTGGAATACAACCC+CGG | 0.621041 | 2_4:-52103440 | Msa0334030:three_prime_UTR |
| AACCACTACCGGCGTTATCG+CGG | 0.621347 | 2_4:-52104533 | Msa0334030:CDS |
| CATTTCTGCTTTGACAACAG+AGG | 0.628061 | 2_4:-52103855 | Msa0334030:intron |
| GCGCGATTGCGGGTATAAAG+CGG | 0.628536 | 2_4:-52104435 | Msa0334030:three_prime_UTR |
| TACAATCAAGAGACGAAGAG+AGG | 0.631441 | 2_4:+52104208 | None:intergenic |
| AAGCGGATTTGGGTGAGGAG+AGG | 0.632963 | 2_4:+52105904 | None:intergenic |
| GCGGCGATGAACGAGTGAAG+CGG | 0.636022 | 2_4:+52105887 | None:intergenic |
| CGTAGCGGACGCTATTTCGG+TGG | 0.638762 | 2_4:+52103896 | None:intergenic |
| CTGTTGTCAAAGCAGAAATG+CGG | 0.640229 | 2_4:+52103858 | None:intergenic |
| ATCAATCAATCATGGCGGCG+TGG | 0.642816 | 2_4:-52105962 | Msa0334030:exon |
| AGATCCTCATGGAACTCCAA+AGG | 0.652118 | 2_4:-52105320 | Msa0334030:CDS |
| TTCACCTTTGGAGTTCCATG+AGG | 0.661225 | 2_4:+52105316 | None:intergenic |
| GCTCGGCAAGCAATGAACGT+CGG | 0.679714 | 2_4:-52105930 | Msa0334030:CDS |
| CGGACGCTATTTCGGTGGCG+CGG | 0.686204 | 2_4:+52103901 | None:intergenic |
| GCTTCACTCGTTCATCGCCG+CGG | 0.699867 | 2_4:-52105885 | Msa0334030:CDS |
| GTCAAAGCAGAAATGCGGCG+CGG | 0.709064 | 2_4:+52103863 | None:intergenic |
| AATCGATCAATCAATCATGG+CGG | 0.780331 | 2_4:-52105967 | Msa0334030:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTGTTAATTTGTTAAT+TGG | - | chr2_4:52105137-52105156 | Msa0334030:intron | 10.0% |
| !! | TAAAATACTAATAAAATTCA+AGG | + | chr2_4:52105237-52105256 | None:intergenic | 10.0% |
| !!! | ACATTTTAATTTTTAACCAT+TGG | - | chr2_4:52103866-52103885 | Msa0334030:three_prime_UTR | 15.0% |
| !!! | TATTTTCGAGTATAATTTTT+AGG | - | chr2_4:52105567-52105586 | Msa0334030:intron | 15.0% |
| !! | TGTAAAATAAATTAGAGTGA+AGG | - | chr2_4:52103667-52103686 | Msa0334030:intron | 20.0% |
| !! | TAAATTAATCAAGAAAGAAG+AGG | + | chr2_4:52103928-52103947 | None:intergenic | 20.0% |
| !!! | TATTTTAGTCTTAAACAAAC+AGG | - | chr2_4:52104250-52104269 | Msa0334030:three_prime_UTR | 20.0% |
| !!! | AGCTTTATAAAGTAAAATCA+CGG | + | chr2_4:52104696-52104715 | None:intergenic | 20.0% |
| !!! | AGCTCTTGATTTTAATTTTT+AGG | - | chr2_4:52104712-52104731 | Msa0334030:CDS | 20.0% |
| !! | CAAAACATTAACAATTAACA+AGG | + | chr2_4:52105171-52105190 | None:intergenic | 20.0% |
| !!! | TGAATTTTGAGTAATGTTTA+AGG | - | chr2_4:52105320-52105339 | Msa0334030:CDS | 20.0% |
| !! | GTATTTAAGCACTTAATATA+AGG | + | chr2_4:52105492-52105511 | None:intergenic | 20.0% |
| !! | TTTGAAATTTACAGTGATGA+CGG | + | chr2_4:52103493-52103512 | None:intergenic | 25.0% |
| ! | TGGAACTTATATGCTAAAAA+AGG | - | chr2_4:52103832-52103851 | Msa0334030:intron | 25.0% |
| ! | GGAACTTATATGCTAAAAAA+GGG | - | chr2_4:52103833-52103852 | Msa0334030:intron | 25.0% |
| ! | GAACTTATATGCTAAAAAAG+GGG | - | chr2_4:52103834-52103853 | Msa0334030:intron | 25.0% |
| !! | TAATTATATCAGGAGTATAC+AGG | + | chr2_4:52104305-52104324 | None:intergenic | 25.0% |
| ! | AATTCATCGAATTTCCTATA+AGG | + | chr2_4:52104633-52104652 | None:intergenic | 25.0% |
| !! | TTCCACTTAAAACCATTTTA+AGG | - | chr2_4:52104914-52104933 | Msa0334030:intron | 25.0% |
| !! | TCCACTTAAAACCATTTTAA+GGG | - | chr2_4:52104915-52104934 | Msa0334030:intron | 25.0% |
| ! | TACAAAAATGACCCTTAAAA+TGG | + | chr2_4:52104929-52104948 | None:intergenic | 25.0% |
| !!! | TTGTTAATTTGTTAATTGGC+AGG | - | chr2_4:52105141-52105160 | Msa0334030:intron | 25.0% |
| !!! | TGTTAATTTGTTAATTGGCA+GGG | - | chr2_4:52105142-52105161 | Msa0334030:intron | 25.0% |
| !!! | ACTTTTGTTACTTTAAGCTT+TGG | - | chr2_4:52105192-52105211 | Msa0334030:intron | 25.0% |
| !! | TGTGACTTGTATTTCAAATT+AGG | - | chr2_4:52105288-52105307 | Msa0334030:CDS | 25.0% |
| ! | CATATGCATGTAATCATATT+TGG | + | chr2_4:52105517-52105536 | None:intergenic | 25.0% |
| ! | AAAAGATAAAAATCACAACC+CGG | + | chr2_4:52105707-52105726 | None:intergenic | 25.0% |
| !! | ATAAATTAGCTTACCGAAAT+TGG | - | chr2_4:52105889-52105908 | Msa0334030:CDS | 25.0% |
| ! | TGAACGTTAAAAACCAATTT+CGG | + | chr2_4:52105905-52105924 | None:intergenic | 25.0% |
| ATCAATCGATCAATCAATCA+TGG | - | chr2_4:52103330-52103349 | Msa0334030:three_prime_UTR | 30.0% | |
| GCTTATTATTGTCTTCTCTT+TGG | - | chr2_4:52103800-52103819 | Msa0334030:intron | 30.0% | |
| GCAACATGTCGAATTAATAT+AGG | + | chr2_4:52103955-52103974 | None:intergenic | 30.0% | |
| GAGATCTTAAACTAGAAAGA+GGG | + | chr2_4:52104081-52104100 | None:intergenic | 30.0% | |
| AGAGATCTTAAACTAGAAAG+AGG | + | chr2_4:52104082-52104101 | None:intergenic | 30.0% | |
| AATGTCTCAGAATCAAAATG+AGG | + | chr2_4:52104115-52104134 | None:intergenic | 30.0% | |
| TGCGTAAGGATAATTATATC+AGG | + | chr2_4:52104315-52104334 | None:intergenic | 30.0% | |
| AACTGTAACAACAAAAGACT+TGG | + | chr2_4:52104518-52104537 | None:intergenic | 30.0% | |
| AAAGTAAAATCACGGTAACA+AGG | + | chr2_4:52104688-52104707 | None:intergenic | 30.0% | |
| !!! | ACCCTTAAAATGGTTTTAAG+TGG | + | chr2_4:52104919-52104938 | None:intergenic | 30.0% |
| ATGGAGAAGAGTAATAGTTA+GGG | + | chr2_4:52104962-52104981 | None:intergenic | 30.0% | |
| !! | TTTGTTACTTTAAGCTTTGG+AGG | - | chr2_4:52105195-52105214 | Msa0334030:intron | 30.0% |
| GCACTTAATATAAGGAACTT+TGG | + | chr2_4:52105484-52105503 | None:intergenic | 30.0% | |
| ! | GCAGTTGTTATTAAAATCTC+AGG | + | chr2_4:52105670-52105689 | None:intergenic | 30.0% |
| CTAATAAAATTGCCCAAAAC+TGG | + | chr2_4:52105741-52105760 | None:intergenic | 30.0% | |
| ! | TGTTATGTGTTATTGTCTCT+TGG | - | chr2_4:52105824-52105843 | Msa0334030:intron | 30.0% |
| TAATAAGTTGCAACAGTTTG+TGG | - | chr2_4:52105847-52105866 | Msa0334030:intron | 30.0% | |
| AATCGATCAATCAATCATGG+CGG | - | chr2_4:52103333-52103352 | Msa0334030:three_prime_UTR | 35.0% | |
| !! | ATTTACAGTGATGACGGAAA+AGG | + | chr2_4:52103487-52103506 | None:intergenic | 35.0% |
| ATGCACAAATGAGAGTGATT+TGG | + | chr2_4:52103525-52103544 | None:intergenic | 35.0% | |
| TGATCTACAATGCAAACAGA+AGG | - | chr2_4:52103751-52103770 | Msa0334030:intron | 35.0% | |
| ACAGAAGGAATGTACATACT+AGG | - | chr2_4:52103766-52103785 | Msa0334030:intron | 35.0% | |
| CTTCTCTTTGGCTATGAAAA+TGG | - | chr2_4:52103812-52103831 | Msa0334030:intron | 35.0% | |
| TGTTCTTCTTTCCACTTAGA+TGG | + | chr2_4:52104032-52104051 | None:intergenic | 35.0% | |
| CAACGTAAGCAACTTCTTAA+TGG | - | chr2_4:52104177-52104196 | Msa0334030:three_prime_UTR | 35.0% | |
| TTAAACAAACAGGCCCTTAA+GGG | - | chr2_4:52104260-52104279 | Msa0334030:three_prime_UTR | 35.0% | |
| TTGTTCACTATATGTGCGTA+AGG | + | chr2_4:52104329-52104348 | None:intergenic | 35.0% | |
| CATTACTCAATCTTCTTCCT+TGG | + | chr2_4:52104410-52104429 | None:intergenic | 35.0% | |
| TTTGTGATTGCTTCTTTGAC+TGG | - | chr2_4:52104536-52104555 | Msa0334030:CDS | 35.0% | |
| GATGGAGAAGAGTAATAGTT+AGG | + | chr2_4:52104963-52104982 | None:intergenic | 35.0% | |
| TTTGCATAGCACTTGAAGTA+TGG | - | chr2_4:52105766-52105785 | Msa0334030:intron | 35.0% | |
| TAGCACTTGAAGTATGGTTT+AGG | - | chr2_4:52105772-52105791 | Msa0334030:intron | 35.0% | |
| TAAGCTAATTTATCAGCAGC+CGG | + | chr2_4:52105882-52105901 | None:intergenic | 35.0% | |
| !! | GAGTGAAGGCATTGCAATTT+AGG | - | chr2_4:52103681-52103700 | Msa0334030:intron | 40.0% |
| ! | CATTCTACTAGCTTCACCAA+TGG | + | chr2_4:52103885-52103904 | None:intergenic | 40.0% |
| TGTTGCATTGTAGATCCTCA+TGG | - | chr2_4:52103969-52103988 | Msa0334030:three_prime_UTR | 40.0% | |
| GAACTCCAAAGGTGAACATT+TGG | - | chr2_4:52103991-52104010 | Msa0334030:three_prime_UTR | 40.0% | |
| GAAGTTGCTTACGTTGAAAG+AGG | + | chr2_4:52104173-52104192 | None:intergenic | 40.0% | |
| CTTAAACAAACAGGCCCTTA+AGG | - | chr2_4:52104259-52104278 | Msa0334030:three_prime_UTR | 40.0% | |
| CTGTTCTCAAGTTCCCTTAA+GGG | + | chr2_4:52104276-52104295 | None:intergenic | 40.0% | |
| ACTGTTCTCAAGTTCCCTTA+AGG | + | chr2_4:52104277-52104296 | None:intergenic | 40.0% | |
| TCCTTGGTATAGTAGTTCGA+AGG | + | chr2_4:52104394-52104413 | None:intergenic | 40.0% | |
| !! | AACACGTTGATGATGTCATG+AGG | + | chr2_4:52104455-52104474 | None:intergenic | 40.0% |
| TGATTGCTTCTTTGACTGGA+TGG | - | chr2_4:52104540-52104559 | Msa0334030:CDS | 40.0% | |
| ! | GGATGGACTTTACTCTTCTA+CGG | - | chr2_4:52104557-52104576 | Msa0334030:CDS | 40.0% |
| GGTACGCAAGATTACCTTAT+AGG | - | chr2_4:52104616-52104635 | Msa0334030:intron | 40.0% | |
| TTGTCAATAGCAACCACTAC+CGG | - | chr2_4:52104756-52104775 | Msa0334030:CDS | 40.0% | |
| ! | AGCTGTGTATTTGGTTCAGA+TGG | + | chr2_4:52104981-52105000 | None:intergenic | 40.0% |
| TGTGTTTGCAGCTGTGTATT+TGG | + | chr2_4:52104990-52105009 | None:intergenic | 40.0% | |
| AGAGATGATGAGATGAGAAG+AGG | + | chr2_4:52105047-52105066 | None:intergenic | 40.0% | |
| GAAGAGAGGAGAACAAAGAT+GGG | + | chr2_4:52105081-52105100 | None:intergenic | 40.0% | |
| TACAATCAAGAGACGAAGAG+AGG | + | chr2_4:52105095-52105114 | None:intergenic | 40.0% | |
| CTGTTGTCAAAGCAGAAATG+CGG | + | chr2_4:52105445-52105464 | None:intergenic | 40.0% | |
| CATTTCTGCTTTGACAACAG+AGG | - | chr2_4:52105445-52105464 | Msa0334030:intron | 40.0% | |
| TTGTCATGTCTTACTGCAGA+AGG | - | chr2_4:52105626-52105645 | Msa0334030:intron | 40.0% | |
| TTAAAATCTCAGGCCTTGCT+TGG | + | chr2_4:52105660-52105679 | None:intergenic | 40.0% | |
| ! | TTGTGAAGAGAAGCCAGTTT+TGG | - | chr2_4:52105725-52105744 | Msa0334030:intron | 40.0% |
| ! | TGTGAAGAGAAGCCAGTTTT+GGG | - | chr2_4:52105726-52105745 | Msa0334030:intron | 40.0% |
| AAGCTAATTTATCAGCAGCC+GGG | + | chr2_4:52105881-52105900 | None:intergenic | 40.0% | |
| GCAATCATGACATGAGTCAT+AGG | + | chr2_4:52105947-52105966 | None:intergenic | 40.0% | |
| ! | TGAACGAGTGAAGCGGATTT+GGG | + | chr2_4:52103409-52103428 | None:intergenic | 45.0% |
| ! | ATGAACGAGTGAAGCGGATT+TGG | + | chr2_4:52103410-52103429 | None:intergenic | 45.0% |
| AAGGGAGGGGAATACAATAC+CGG | + | chr2_4:52103455-52103474 | None:intergenic | 45.0% | |
| !! | GAAGGCATTGCAATTTAGGC+TGG | - | chr2_4:52103685-52103704 | Msa0334030:intron | 45.0% |
| AGATCCTCATGGAACTCCAA+AGG | - | chr2_4:52103980-52103999 | Msa0334030:three_prime_UTR | 45.0% | |
| !! | TTCACCTTTGGAGTTCCATG+AGG | + | chr2_4:52103987-52104006 | None:intergenic | 45.0% |
| TCCAAAGGTGAACATTTGGC+AGG | - | chr2_4:52103995-52104014 | Msa0334030:three_prime_UTR | 45.0% | |
| TCCTGCCAAATGTTCACCTT+TGG | + | chr2_4:52103999-52104018 | None:intergenic | 45.0% | |
| ATCCACTGTCTCCATCTAAG+TGG | - | chr2_4:52104018-52104037 | Msa0334030:three_prime_UTR | 45.0% | |
| TTCCACTTAGATGGAGACAG+TGG | + | chr2_4:52104023-52104042 | None:intergenic | 45.0% | |
| GCCTTCGAACTACTATACCA+AGG | - | chr2_4:52104390-52104409 | Msa0334030:three_prime_UTR | 45.0% | |
| TGGACTTTACTCTTCTACGG+TGG | - | chr2_4:52104560-52104579 | Msa0334030:CDS | 45.0% | |
| GGTGGTTACAAGTTCTTCAC+TGG | - | chr2_4:52104578-52104597 | Msa0334030:intron | 45.0% | |
| GGTTACAAGTTCTTCACTGG+TGG | - | chr2_4:52104581-52104600 | Msa0334030:intron | 45.0% | |
| GATGAGATGAGAAGAGGAGA+TGG | + | chr2_4:52105041-52105060 | None:intergenic | 45.0% | |
| CGAAGAGAGGAGAACAAAGA+TGG | + | chr2_4:52105082-52105101 | None:intergenic | 45.0% | |
| !! | GCTTTGGAGGCTTAAAGTGT+TGG | - | chr2_4:52105208-52105227 | Msa0334030:intron | 45.0% |
| ACTGCTAAGAAGTTGCTGTC+CGG | - | chr2_4:52105685-52105704 | Msa0334030:intron | 45.0% | |
| CAGTTTGTGGAATACAACCC+CGG | - | chr2_4:52105860-52105879 | Msa0334030:intron | 45.0% | |
| AGCTAATTTATCAGCAGCCG+GGG | + | chr2_4:52105880-52105899 | None:intergenic | 45.0% | |
| ATCAATCAATCATGGCGGCG+TGG | - | chr2_4:52103338-52103357 | Msa0334030:three_prime_UTR | 50.0% | |
| !! | AAAGGCATCGAAGGAAGGGA+GGG | + | chr2_4:52103469-52103488 | None:intergenic | 50.0% |
| !! | AAAAGGCATCGAAGGAAGGG+AGG | + | chr2_4:52103470-52103489 | None:intergenic | 50.0% |
| !! | CGGAAAAGGCATCGAAGGAA+GGG | + | chr2_4:52103473-52103492 | None:intergenic | 50.0% |
| !! | ACGGAAAAGGCATCGAAGGA+AGG | + | chr2_4:52103474-52103493 | None:intergenic | 50.0% |
| !! | GATGACGGAAAAGGCATCGA+AGG | + | chr2_4:52103478-52103497 | None:intergenic | 50.0% |
| GTTCTTCACTGGTGGCAAGA+AGG | - | chr2_4:52104589-52104608 | Msa0334030:intron | 50.0% | |
| !!! | GCGTCGCGTTTTACTGGTTT+TGG | + | chr2_4:52104803-52104822 | None:intergenic | 50.0% |
| GGTATAAAGCGGGAACGATG+CGG | - | chr2_4:52104876-52104895 | Msa0334030:intron | 50.0% | |
| GTATAAAGCGGGAACGATGC+GGG | - | chr2_4:52104877-52104896 | Msa0334030:intron | 50.0% | |
| GAAGGTTGCAGAACCAAGCA+AGG | - | chr2_4:52105644-52105663 | Msa0334030:intron | 50.0% | |
| CTGCTAAGAAGTTGCTGTCC+GGG | - | chr2_4:52105686-52105705 | Msa0334030:intron | 50.0% | |
| GCTCGGCAAGCAATGAACGT+CGG | - | chr2_4:52103370-52103389 | Msa0334030:three_prime_UTR | 55.0% | |
| ! | AAGCGGATTTGGGTGAGGAG+AGG | + | chr2_4:52103399-52103418 | None:intergenic | 55.0% |
| ! | GAGTGAAGCGGATTTGGGTG+AGG | + | chr2_4:52103404-52103423 | None:intergenic | 55.0% |
| GGAGGGGAATACAATACCGG+AGG | + | chr2_4:52103452-52103471 | None:intergenic | 55.0% | |
| !! | AAGGCATCGAAGGAAGGGAG+GGG | + | chr2_4:52103468-52103487 | None:intergenic | 55.0% |
| CACTGGTGGCAAGAAGGAAG+AGG | - | chr2_4:52104595-52104614 | Msa0334030:intron | 55.0% | |
| AACCACTACCGGCGTTATCG+CGG | - | chr2_4:52104767-52104786 | Msa0334030:CDS | 55.0% | |
| TTGGAGAAAGCGGCTGATCC+AGG | - | chr2_4:52104843-52104862 | Msa0334030:intron | 55.0% | |
| TTTATACCCGCAATCGCGCC+TGG | + | chr2_4:52104864-52104883 | None:intergenic | 55.0% | |
| GCGCGATTGCGGGTATAAAG+CGG | - | chr2_4:52104865-52104884 | Msa0334030:intron | 55.0% | |
| CGCGATTGCGGGTATAAAGC+GGG | - | chr2_4:52104866-52104885 | Msa0334030:intron | 55.0% | |
| !! | ACGCGTAGCGGACGCTATTT+CGG | + | chr2_4:52105410-52105429 | None:intergenic | 55.0% |
| TCAAAGCAGAAATGCGGCGC+GGG | + | chr2_4:52105439-52105458 | None:intergenic | 55.0% | |
| GTCAAAGCAGAAATGCGGCG+CGG | + | chr2_4:52105440-52105459 | None:intergenic | 55.0% | |
| GCGGCGATGAACGAGTGAAG+CGG | + | chr2_4:52103416-52103435 | None:intergenic | 60.0% | |
| GCTTCACTCGTTCATCGCCG+CGG | - | chr2_4:52103415-52103434 | Msa0334030:three_prime_UTR | 60.0% | |
| ! | AGCGCTGCGTCGCGTTTTAC+TGG | + | chr2_4:52104809-52104828 | None:intergenic | 60.0% |
| AAACGCGACGCAGCGCTACA+AGG | - | chr2_4:52104812-52104831 | Msa0334030:intron | 60.0% | |
| GGGAACGATGCGGGTCAAAG+CGG | - | chr2_4:52104886-52104905 | Msa0334030:intron | 60.0% | |
| GGAACGATGCGGGTCAAAGC+GGG | - | chr2_4:52104887-52104906 | Msa0334030:intron | 60.0% | |
| !! | CGTAGCGGACGCTATTTCGG+TGG | + | chr2_4:52105407-52105426 | None:intergenic | 60.0% |
| ACTCGTTCATCGCCGCGGCA+TGG | - | chr2_4:52103420-52103439 | Msa0334030:three_prime_UTR | 65.0% | |
| ! | GGCGGAGCGCTTGGAGAAAG+CGG | - | chr2_4:52104833-52104852 | Msa0334030:intron | 65.0% |
| GGCTGATCCAGGCGCGATTG+CGG | - | chr2_4:52104854-52104873 | Msa0334030:intron | 65.0% | |
| GCTGATCCAGGCGCGATTGC+GGG | - | chr2_4:52104855-52104874 | Msa0334030:intron | 65.0% | |
| ! | CGGACGCTATTTCGGTGGCG+CGG | + | chr2_4:52105402-52105421 | None:intergenic | 65.0% |
| CAGAAATGCGGCGCGGGATG+CGG | + | chr2_4:52105433-52105452 | None:intergenic | 65.0% | |
| CGGCGTGGACAGCAGCAGCT+CGG | - | chr2_4:52103353-52103372 | Msa0334030:three_prime_UTR | 70.0% | |
| GTTCATCGCCGCGGCATGGC+TGG | - | chr2_4:52103424-52103443 | Msa0334030:three_prime_UTR | 70.0% | |
| CGGAGGAACCAGCCATGCCG+CGG | + | chr2_4:52103435-52103454 | None:intergenic | 70.0% | |
| ! | CGCGGCATGGCTGGTTCCTC+CGG | - | chr2_4:52103433-52103452 | Msa0334030:three_prime_UTR | 70.0% |
| CGCCGCGATAACGCCGGTAG+TGG | + | chr2_4:52104772-52104791 | None:intergenic | 70.0% | |
| CTACCGGCGTTATCGCGGCG+CGG | - | chr2_4:52104772-52104791 | Msa0334030:intron | 70.0% | |
| TACCGGCGTTATCGCGGCGC+GGG | - | chr2_4:52104773-52104792 | Msa0334030:intron | 70.0% | |
| CGCGACGCAGCGCTACAAGG+CGG | - | chr2_4:52104815-52104834 | Msa0334030:intron | 70.0% | |
| ! | GCGCTACAAGGCGGAGCGCT+TGG | - | chr2_4:52104824-52104843 | Msa0334030:intron | 70.0% |
| ACCGGCGTTATCGCGGCGCG+GGG | - | chr2_4:52104774-52104793 | Msa0334030:intron | 75.0% | |
| CGCGGGATGCGGACGCGTAG+CGG | + | chr2_4:52105422-52105441 | None:intergenic | 75.0% | |
| ! | GCCCCGCGCCGCGATAACGC+CGG | + | chr2_4:52104778-52104797 | None:intergenic | 80.0% |
| ! | GGCGTTATCGCGGCGCGGGG+CGG | - | chr2_4:52104777-52104796 | Msa0334030:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 52103314 | 52106008 | 52103314 | ID=Msa0334030;Name=Msa0334030 |
| chr2_4 | mRNA | 52103314 | 52106008 | 52103314 | ID=Msa0334030-mRNA-1;Parent=Msa0334030;Name=Msa0334030-mRNA-1;_AED=0.12;_eAED=0.12;_QI=35|1|1|1|0.75|0.8|5|971|127 |
| chr2_4 | exon | 52103314 | 52103677 | 52103314 | ID=Msa0334030-mRNA-1:exon:15703;Parent=Msa0334030-mRNA-1 |
| chr2_4 | exon | 52103856 | 52104588 | 52103856 | ID=Msa0334030-mRNA-1:exon:15702;Parent=Msa0334030-mRNA-1 |
| chr2_4 | exon | 52104706 | 52104786 | 52104706 | ID=Msa0334030-mRNA-1:exon:15701;Parent=Msa0334030-mRNA-1 |
| chr2_4 | exon | 52105270 | 52105340 | 52105270 | ID=Msa0334030-mRNA-1:exon:15700;Parent=Msa0334030-mRNA-1 |
| chr2_4 | exon | 52105868 | 52106008 | 52105868 | ID=Msa0334030-mRNA-1:exon:15699;Parent=Msa0334030-mRNA-1 |
| chr2_4 | five_prime_UTR | 52105974 | 52106008 | 52105974 | ID=Msa0334030-mRNA-1:five_prime_utr;Parent=Msa0334030-mRNA-1 |
| chr2_4 | CDS | 52105868 | 52105973 | 52105868 | ID=Msa0334030-mRNA-1:cds;Parent=Msa0334030-mRNA-1 |
| chr2_4 | CDS | 52105270 | 52105340 | 52105270 | ID=Msa0334030-mRNA-1:cds;Parent=Msa0334030-mRNA-1 |
| chr2_4 | CDS | 52104706 | 52104786 | 52104706 | ID=Msa0334030-mRNA-1:cds;Parent=Msa0334030-mRNA-1 |
| chr2_4 | CDS | 52104463 | 52104588 | 52104463 | ID=Msa0334030-mRNA-1:cds;Parent=Msa0334030-mRNA-1 |
| chr2_4 | three_prime_UTR | 52103856 | 52104462 | 52103856 | ID=Msa0334030-mRNA-1:three_prime_utr;Parent=Msa0334030-mRNA-1 |
| chr2_4 | three_prime_UTR | 52103314 | 52103677 | 52103314 | ID=Msa0334030-mRNA-1:three_prime_utr;Parent=Msa0334030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
