Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0333910 | XP_013464773.1 | 92.045 | 88 | 7 | 0 | 1 | 88 | 1 | 88 | 2.73e-54 | 175 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0218830 | Msa0333910 | 0.810973 | 8.830323e-51 | -8.615850e-47 |
| Msa0266370 | Msa0333910 | 0.802612 | 5.165200e-49 | -8.615850e-47 |
| Msa0297830 | Msa0333910 | 0.803579 | 3.259257e-49 | -8.615850e-47 |
| Msa0333910 | Msa0334030 | 0.931975 | 1.700789e-94 | -8.615850e-47 |
| Msa0333910 | Msa0481850 | 0.809778 | 1.599303e-50 | -8.615850e-47 |
| Msa0333910 | Msa0573350 | 0.808333 | 3.260456e-50 | -8.615850e-47 |
| Msa0333910 | Msa0591050 | 0.810895 | 9.180900e-51 | -8.615850e-47 |
| Msa0333910 | Msa0604960 | 0.811539 | 6.657180e-51 | -8.615850e-47 |
| Msa0333910 | Msa0705800 | 0.810323 | 1.220285e-50 | -8.615850e-47 |
| Msa0333910 | Msa0712610 | 0.815080 | 1.110187e-51 | -8.615850e-47 |
| Msa0333910 | Msa0766080 | 0.844285 | 8.313277e-59 | -8.615850e-47 |
| Msa0333910 | Msa0781080 | 0.814598 | 1.420125e-51 | -8.615850e-47 |
| Msa0333910 | Msa0822580 | 0.808149 | 3.568339e-50 | -8.615850e-47 |
| Msa0333910 | Msa1039520 | 0.803432 | 3.496782e-49 | -8.615850e-47 |
| Msa0333910 | Msa1080350 | 0.807157 | 5.797538e-50 | -8.615850e-47 |
| Msa0333910 | Msa1085470 | 0.808836 | 2.546314e-50 | -8.615850e-47 |
| Msa0333910 | Msa1125860 | 0.800658 | 1.299698e-48 | -8.615850e-47 |
| Msa0333910 | Msa1126060 | 0.804357 | 2.245540e-49 | -8.615850e-47 |
| Msa0333910 | Msa1126470 | 0.812238 | 4.689163e-51 | -8.615850e-47 |
| Msa0333910 | Msa1126520 | 0.811636 | 6.341748e-51 | -8.615850e-47 |
| Msa0333910 | Msa1356790 | 0.814491 | 1.499739e-51 | -8.615850e-47 |
| Msa0333910 | Msa1369190 | 0.810886 | 9.221335e-51 | -8.615850e-47 |
| Msa0333910 | Msa1374240 | 0.809134 | 2.198235e-50 | -8.615850e-47 |
| Msa0333910 | Msa1418770 | 0.811456 | 6.939854e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0333910 | MtrunA17_Chr2g0318351 | 92.045 | 88 | 7 | 0 | 1 | 88 | 1 | 88 | 2.51e-58 | 175 |
| Msa0333910 | MtrunA17_Chr4g0022541 | 61.905 | 84 | 29 | 1 | 9 | 89 | 6 | 89 | 6.04e-34 | 113 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0333910 | AT2G20820.1 | 52.439 | 82 | 35 | 1 | 8 | 85 | 5 | 86 | 1.23e-25 | 92.8 |
| Msa0333910 | AT2G20820.2 | 41.667 | 60 | 31 | 1 | 8 | 63 | 5 | 64 | 5.71e-11 | 55.8 |
Find 97 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAATTAGCTTACCGAAAT+TGG | 0.139317 | 2_4:-51976548 | Msa0333910:three_prime_UTR |
| TGTGACTTGTATTTCAAATT+AGG | 0.183116 | 2_4:-51977149 | Msa0333910:three_prime_UTR |
| TTAATTGTTAATTTGTTAAT+TGG | 0.254008 | 2_4:-51977300 | Msa0333910:three_prime_UTR |
| ATGAACGAGTGAAGCGGATT+TGG | 0.264875 | 2_4:+51979030 | None:intergenic |
| GATGGAGAAGAGTAATAGTT+AGG | 0.282552 | 2_4:+51977477 | None:intergenic |
| TGTTCTTCTTTCCACTTAGA+TGG | 0.309402 | 2_4:+51978408 | None:intergenic |
| TTGTGAAGAGAAGCCAGTTT+TGG | 0.313013 | 2_4:-51976712 | Msa0333910:three_prime_UTR |
| TGTGTTTGCAGCTGTGTATT+TGG | 0.328090 | 2_4:+51977450 | None:intergenic |
| GCTGATCCAGGCGCGATTGC+GGG | 0.328692 | 2_4:-51977582 | Msa0333910:exon |
| CTAATAAAATTGCCCAAAAC+TGG | 0.335881 | 2_4:+51976699 | None:intergenic |
| TTTGCATAGCACTTGAAGTA+TGG | 0.341942 | 2_4:-51976671 | Msa0333910:three_prime_UTR |
| TCCTGCCAAATGTTCACCTT+TGG | 0.375750 | 2_4:+51978441 | None:intergenic |
| TGAACGAGTGAAGCGGATTT+GGG | 0.376003 | 2_4:+51979031 | None:intergenic |
| TAGCACTTGAAGTATGGTTT+AGG | 0.377916 | 2_4:-51976665 | Msa0333910:three_prime_UTR |
| TACCGGCGTTATCGCGGCGC+GGG | 0.382131 | 2_4:-51977664 | Msa0333910:CDS |
| TTTGTTACTTTAAGCTTTGG+AGG | 0.384837 | 2_4:-51977242 | Msa0333910:three_prime_UTR |
| TTTGTGATTGCTTCTTTGAC+TGG | 0.396668 | 2_4:-51977901 | Msa0333910:CDS |
| CGCGGCATGGCTGGTTCCTC+CGG | 0.398709 | 2_4:-51979004 | Msa0333910:intron |
| TTGTTAATTTGTTAATTGGC+AGG | 0.400746 | 2_4:-51977296 | Msa0333910:three_prime_UTR |
| ACGCGTAGCGGACGCTATTT+CGG | 0.402730 | 2_4:+51977030 | None:intergenic |
| TGTTATGTGTTATTGTCTCT+TGG | 0.403590 | 2_4:-51976613 | Msa0333910:three_prime_UTR |
| TTGGAGAAAGCGGCTGATCC+AGG | 0.406216 | 2_4:-51977594 | Msa0333910:exon |
| TAATAAGTTGCAACAGTTTG+TGG | 0.408408 | 2_4:-51976590 | Msa0333910:three_prime_UTR |
| GTTCATCGCCGCGGCATGGC+TGG | 0.417524 | 2_4:-51979013 | Msa0333910:CDS |
| GAACTCCAAAGGTGAACATT+TGG | 0.428445 | 2_4:-51978446 | Msa0333910:CDS |
| TGATTGCTTCTTTGACTGGA+TGG | 0.428585 | 2_4:-51977897 | Msa0333910:CDS |
| GCGCTACAAGGCGGAGCGCT+TGG | 0.430725 | 2_4:-51977613 | Msa0333910:CDS |
| GCAATCATGACATGAGTCAT+AGG | 0.431140 | 2_4:+51976493 | None:intergenic |
| GATGAGATGAGAAGAGGAGA+TGG | 0.431439 | 2_4:+51977399 | None:intergenic |
| GCAGTTGTTATTAAAATCTC+AGG | 0.431871 | 2_4:+51976770 | None:intergenic |
| CGCCGCGATAACGCCGGTAG+TGG | 0.447497 | 2_4:+51977668 | None:intergenic |
| TAAAATACTAATAAAATTCA+AGG | 0.449932 | 2_4:+51977203 | None:intergenic |
| CGAAGAGAGGAGAACAAAGA+TGG | 0.452734 | 2_4:+51977358 | None:intergenic |
| CAGAAATGCGGCGCGGGATG+CGG | 0.454183 | 2_4:+51977007 | None:intergenic |
| CTGCTAAGAAGTTGCTGTCC+GGG | 0.461803 | 2_4:-51976751 | Msa0333910:three_prime_UTR |
| ATGGAGAAGAGTAATAGTTA+GGG | 0.464154 | 2_4:+51977478 | None:intergenic |
| ACTGCTAAGAAGTTGCTGTC+CGG | 0.471708 | 2_4:-51976752 | Msa0333910:three_prime_UTR |
| CGCGGGATGCGGACGCGTAG+CGG | 0.475793 | 2_4:+51977018 | None:intergenic |
| TTAAAATCTCAGGCCTTGCT+TGG | 0.475998 | 2_4:+51976780 | None:intergenic |
| GGATGGACTTTACTCTTCTA+CGG | 0.478552 | 2_4:-51977880 | Msa0333910:CDS |
| TTTATACCCGCAATCGCGCC+TGG | 0.480732 | 2_4:+51977576 | None:intergenic |
| GGAACGATGCGGGTCAAAGC+GGG | 0.481523 | 2_4:-51977550 | Msa0333910:three_prime_UTR |
| ACTCGTTCATCGCCGCGGCA+TGG | 0.488087 | 2_4:-51979017 | Msa0333910:CDS |
| GGCGTTATCGCGGCGCGGGG+CGG | 0.490470 | 2_4:-51977660 | Msa0333910:CDS |
| GGCGGAGCGCTTGGAGAAAG+CGG | 0.496259 | 2_4:-51977604 | Msa0333910:CDS |
| TAAGCTAATTTATCAGCAGC+CGG | 0.501898 | 2_4:+51976558 | None:intergenic |
| TGTTAATTTGTTAATTGGCA+GGG | 0.510648 | 2_4:-51977295 | Msa0333910:three_prime_UTR |
| ATCAATCGATCAATCAATCA+TGG | 0.512289 | 2_4:-51979107 | Msa0333910:exon |
| CGCGATTGCGGGTATAAAGC+GGG | 0.516561 | 2_4:-51977571 | Msa0333910:three_prime_UTR |
| GCTTTGGAGGCTTAAAGTGT+TGG | 0.517216 | 2_4:-51977229 | Msa0333910:three_prime_UTR |
| TCAAAGCAGAAATGCGGCGC+GGG | 0.518059 | 2_4:+51977001 | None:intergenic |
| GGTGGTTACAAGTTCTTCAC+TGG | 0.518333 | 2_4:-51977859 | Msa0333910:CDS |
| GTATAAAGCGGGAACGATGC+GGG | 0.519669 | 2_4:-51977560 | Msa0333910:three_prime_UTR |
| GGCTGATCCAGGCGCGATTG+CGG | 0.524217 | 2_4:-51977583 | Msa0333910:exon |
| GCCCCGCGCCGCGATAACGC+CGG | 0.524566 | 2_4:+51977662 | None:intergenic |
| AAGCTAATTTATCAGCAGCC+GGG | 0.527728 | 2_4:+51976559 | None:intergenic |
| AGCTGTGTATTTGGTTCAGA+TGG | 0.534040 | 2_4:+51977459 | None:intergenic |
| AGAGATGATGAGATGAGAAG+AGG | 0.537856 | 2_4:+51977393 | None:intergenic |
| TCCAAAGGTGAACATTTGGC+AGG | 0.544619 | 2_4:-51978442 | Msa0333910:CDS |
| AAACGCGACGCAGCGCTACA+AGG | 0.552023 | 2_4:-51977625 | Msa0333910:CDS |
| GAGTGAAGCGGATTTGGGTG+AGG | 0.556913 | 2_4:+51979036 | None:intergenic |
| TTGTCAATAGCAACCACTAC+CGG | 0.558615 | 2_4:-51977681 | Msa0333910:CDS |
| TGTTGCATTGTAGATCCTCA+TGG | 0.559182 | 2_4:-51978468 | Msa0333910:intron |
| CACTGGTGGCAAGAAGGAAG+AGG | 0.561461 | 2_4:-51977842 | Msa0333910:intron |
| GAAGAGAGGAGAACAAAGAT+GGG | 0.569521 | 2_4:+51977359 | None:intergenic |
| GTTCTTCACTGGTGGCAAGA+AGG | 0.577858 | 2_4:-51977848 | Msa0333910:CDS |
| ACCGGCGTTATCGCGGCGCG+GGG | 0.583101 | 2_4:-51977663 | Msa0333910:CDS |
| CGGCGTGGACAGCAGCAGCT+CGG | 0.586707 | 2_4:-51979084 | Msa0333910:CDS |
| ATCCACTGTCTCCATCTAAG+TGG | 0.589737 | 2_4:-51978419 | Msa0333910:CDS |
| GAAGGTTGCAGAACCAAGCA+AGG | 0.595991 | 2_4:-51976793 | Msa0333910:three_prime_UTR |
| AGCTAATTTATCAGCAGCCG+GGG | 0.597986 | 2_4:+51976560 | None:intergenic |
| GGTATAAAGCGGGAACGATG+CGG | 0.601207 | 2_4:-51977561 | Msa0333910:three_prime_UTR |
| CGGAGGAACCAGCCATGCCG+CGG | 0.602802 | 2_4:+51979005 | None:intergenic |
| TGGACTTTACTCTTCTACGG+TGG | 0.603616 | 2_4:-51977877 | Msa0333910:CDS |
| CTACCGGCGTTATCGCGGCG+CGG | 0.608624 | 2_4:-51977665 | Msa0333910:CDS |
| TTCCACTTAGATGGAGACAG+TGG | 0.611790 | 2_4:+51978417 | None:intergenic |
| GGGAACGATGCGGGTCAAAG+CGG | 0.614326 | 2_4:-51977551 | Msa0333910:three_prime_UTR |
| CGCGACGCAGCGCTACAAGG+CGG | 0.614415 | 2_4:-51977622 | Msa0333910:CDS |
| CAAAACATTAACAATTAACA+AGG | 0.619550 | 2_4:+51977269 | None:intergenic |
| GGTTACAAGTTCTTCACTGG+TGG | 0.620304 | 2_4:-51977856 | Msa0333910:CDS |
| CAGTTTGTGGAATACAACCC+CGG | 0.621041 | 2_4:-51976577 | Msa0333910:three_prime_UTR |
| AACCACTACCGGCGTTATCG+CGG | 0.621347 | 2_4:-51977670 | Msa0333910:CDS |
| CATTTCTGCTTTGACAACAG+AGG | 0.628061 | 2_4:-51976992 | Msa0333910:intron |
| GCGCGATTGCGGGTATAAAG+CGG | 0.628536 | 2_4:-51977572 | Msa0333910:three_prime_UTR |
| TACAATCAAGAGACGAAGAG+AGG | 0.631441 | 2_4:+51977345 | None:intergenic |
| AAGCGGATTTGGGTGAGGAG+AGG | 0.632963 | 2_4:+51979041 | None:intergenic |
| GCGGCGATGAACGAGTGAAG+CGG | 0.636022 | 2_4:+51979024 | None:intergenic |
| CGTAGCGGACGCTATTTCGG+TGG | 0.638762 | 2_4:+51977033 | None:intergenic |
| CTGTTGTCAAAGCAGAAATG+CGG | 0.640229 | 2_4:+51976995 | None:intergenic |
| ATCAATCAATCATGGCGGCG+TGG | 0.642816 | 2_4:-51979099 | Msa0333910:exon |
| AGATCCTCATGGAACTCCAA+AGG | 0.652118 | 2_4:-51978457 | Msa0333910:CDS |
| TTCACCTTTGGAGTTCCATG+AGG | 0.661225 | 2_4:+51978453 | None:intergenic |
| GCTCGGCAAGCAATGAACGT+CGG | 0.679714 | 2_4:-51979067 | Msa0333910:CDS |
| CGGACGCTATTTCGGTGGCG+CGG | 0.686204 | 2_4:+51977038 | None:intergenic |
| GCTTCACTCGTTCATCGCCG+CGG | 0.699867 | 2_4:-51979022 | Msa0333910:CDS |
| GTCAAAGCAGAAATGCGGCG+CGG | 0.709064 | 2_4:+51977000 | None:intergenic |
| AATCGATCAATCAATCATGG+CGG | 0.780331 | 2_4:-51979104 | Msa0333910:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTGTTAATTTGTTAAT+TGG | - | chr2_4:51978275-51978294 | Msa0333910:intron | 10.0% |
| !! | TAAAATACTAATAAAATTCA+AGG | + | chr2_4:51978375-51978394 | None:intergenic | 10.0% |
| !!! | ACATTTTAATTTTTAACCAT+TGG | - | chr2_4:51977004-51977023 | Msa0333910:three_prime_UTR | 15.0% |
| !!! | TATTTTCGAGTATAATTTTT+AGG | - | chr2_4:51978705-51978724 | Msa0333910:intron | 15.0% |
| !! | TGTAAAATAAATTAGAGTGA+AGG | - | chr2_4:51976805-51976824 | Msa0333910:intron | 20.0% |
| !! | TAAATTAATCAAGAAAGAAG+AGG | + | chr2_4:51977066-51977085 | None:intergenic | 20.0% |
| !!! | TATTTTAGTCTTAAACAAAC+AGG | - | chr2_4:51977388-51977407 | Msa0333910:three_prime_UTR | 20.0% |
| !!! | AGCTTTATAAAGTAAAATCA+CGG | + | chr2_4:51977834-51977853 | None:intergenic | 20.0% |
| !!! | AGCTCTTGATTTTAATTTTT+AGG | - | chr2_4:51977850-51977869 | Msa0333910:CDS | 20.0% |
| !! | CAAAACATTAACAATTAACA+AGG | + | chr2_4:51978309-51978328 | None:intergenic | 20.0% |
| !!! | TGAATTTTGAGTAATGTTTA+AGG | - | chr2_4:51978458-51978477 | Msa0333910:CDS | 20.0% |
| !! | GTATTTAAGCACTTAATATA+AGG | + | chr2_4:51978630-51978649 | None:intergenic | 20.0% |
| !! | TTTGAAATTTACAGTGATGA+CGG | + | chr2_4:51976631-51976650 | None:intergenic | 25.0% |
| ! | TGGAACTTATATGCTAAAAA+AGG | - | chr2_4:51976970-51976989 | Msa0333910:intron | 25.0% |
| ! | GGAACTTATATGCTAAAAAA+GGG | - | chr2_4:51976971-51976990 | Msa0333910:intron | 25.0% |
| ! | GAACTTATATGCTAAAAAAG+GGG | - | chr2_4:51976972-51976991 | Msa0333910:intron | 25.0% |
| !! | TAATTATATCAGGAGTATAC+AGG | + | chr2_4:51977443-51977462 | None:intergenic | 25.0% |
| ! | AATTCATCGAATTTCCTATA+AGG | + | chr2_4:51977771-51977790 | None:intergenic | 25.0% |
| !! | TTCCACTTAAAACCATTTTA+AGG | - | chr2_4:51978052-51978071 | Msa0333910:intron | 25.0% |
| !! | TCCACTTAAAACCATTTTAA+GGG | - | chr2_4:51978053-51978072 | Msa0333910:intron | 25.0% |
| ! | TACAAAAATGACCCTTAAAA+TGG | + | chr2_4:51978067-51978086 | None:intergenic | 25.0% |
| !!! | TTGTTAATTTGTTAATTGGC+AGG | - | chr2_4:51978279-51978298 | Msa0333910:intron | 25.0% |
| !!! | TGTTAATTTGTTAATTGGCA+GGG | - | chr2_4:51978280-51978299 | Msa0333910:intron | 25.0% |
| !!! | ACTTTTGTTACTTTAAGCTT+TGG | - | chr2_4:51978330-51978349 | Msa0333910:intron | 25.0% |
| !! | TGTGACTTGTATTTCAAATT+AGG | - | chr2_4:51978426-51978445 | Msa0333910:CDS | 25.0% |
| ! | CATATGCATGTAATCATATT+TGG | + | chr2_4:51978655-51978674 | None:intergenic | 25.0% |
| ! | AAAAGATAAAAATCACAACC+CGG | + | chr2_4:51978845-51978864 | None:intergenic | 25.0% |
| !! | ATAAATTAGCTTACCGAAAT+TGG | - | chr2_4:51979027-51979046 | Msa0333910:CDS | 25.0% |
| ! | TGAACGTTAAAAACCAATTT+CGG | + | chr2_4:51979043-51979062 | None:intergenic | 25.0% |
| ATCAATCGATCAATCAATCA+TGG | - | chr2_4:51976468-51976487 | Msa0333910:three_prime_UTR | 30.0% | |
| GCTTATTATTGTCTTCTCTT+TGG | - | chr2_4:51976938-51976957 | Msa0333910:intron | 30.0% | |
| GCAACATGTCGAATTAATAT+AGG | + | chr2_4:51977093-51977112 | None:intergenic | 30.0% | |
| GAGATCTTAAACTAGAAAGA+GGG | + | chr2_4:51977219-51977238 | None:intergenic | 30.0% | |
| AGAGATCTTAAACTAGAAAG+AGG | + | chr2_4:51977220-51977239 | None:intergenic | 30.0% | |
| AATGTCTCAGAATCAAAATG+AGG | + | chr2_4:51977253-51977272 | None:intergenic | 30.0% | |
| TGCGTAAGGATAATTATATC+AGG | + | chr2_4:51977453-51977472 | None:intergenic | 30.0% | |
| AACTGTAACAACAAAAGACT+TGG | + | chr2_4:51977656-51977675 | None:intergenic | 30.0% | |
| AAAGTAAAATCACGGTAACA+AGG | + | chr2_4:51977826-51977845 | None:intergenic | 30.0% | |
| !!! | ACCCTTAAAATGGTTTTAAG+TGG | + | chr2_4:51978057-51978076 | None:intergenic | 30.0% |
| ATGGAGAAGAGTAATAGTTA+GGG | + | chr2_4:51978100-51978119 | None:intergenic | 30.0% | |
| !! | TTTGTTACTTTAAGCTTTGG+AGG | - | chr2_4:51978333-51978352 | Msa0333910:intron | 30.0% |
| GCACTTAATATAAGGAACTT+TGG | + | chr2_4:51978622-51978641 | None:intergenic | 30.0% | |
| ! | GCAGTTGTTATTAAAATCTC+AGG | + | chr2_4:51978808-51978827 | None:intergenic | 30.0% |
| CTAATAAAATTGCCCAAAAC+TGG | + | chr2_4:51978879-51978898 | None:intergenic | 30.0% | |
| ! | TGTTATGTGTTATTGTCTCT+TGG | - | chr2_4:51978962-51978981 | Msa0333910:intron | 30.0% |
| TAATAAGTTGCAACAGTTTG+TGG | - | chr2_4:51978985-51979004 | Msa0333910:intron | 30.0% | |
| AATCGATCAATCAATCATGG+CGG | - | chr2_4:51976471-51976490 | Msa0333910:three_prime_UTR | 35.0% | |
| !! | ATTTACAGTGATGACGGAAA+AGG | + | chr2_4:51976625-51976644 | None:intergenic | 35.0% |
| ATGCACAAATGAGAGTGATT+TGG | + | chr2_4:51976663-51976682 | None:intergenic | 35.0% | |
| TGATCTACAATGCAAACAGA+AGG | - | chr2_4:51976889-51976908 | Msa0333910:intron | 35.0% | |
| ACAGAAGGAATGTACATACT+AGG | - | chr2_4:51976904-51976923 | Msa0333910:intron | 35.0% | |
| CTTCTCTTTGGCTATGAAAA+TGG | - | chr2_4:51976950-51976969 | Msa0333910:intron | 35.0% | |
| TGTTCTTCTTTCCACTTAGA+TGG | + | chr2_4:51977170-51977189 | None:intergenic | 35.0% | |
| CAACGTAAGCAACTTCTTAA+TGG | - | chr2_4:51977315-51977334 | Msa0333910:three_prime_UTR | 35.0% | |
| TTAAACAAACAGGCCCTTAA+GGG | - | chr2_4:51977398-51977417 | Msa0333910:three_prime_UTR | 35.0% | |
| TTGTTCACTATATGTGCGTA+AGG | + | chr2_4:51977467-51977486 | None:intergenic | 35.0% | |
| CATTACTCAATCTTCTTCCT+TGG | + | chr2_4:51977548-51977567 | None:intergenic | 35.0% | |
| TTTGTGATTGCTTCTTTGAC+TGG | - | chr2_4:51977674-51977693 | Msa0333910:CDS | 35.0% | |
| GATGGAGAAGAGTAATAGTT+AGG | + | chr2_4:51978101-51978120 | None:intergenic | 35.0% | |
| TTTGCATAGCACTTGAAGTA+TGG | - | chr2_4:51978904-51978923 | Msa0333910:intron | 35.0% | |
| TAGCACTTGAAGTATGGTTT+AGG | - | chr2_4:51978910-51978929 | Msa0333910:intron | 35.0% | |
| TAAGCTAATTTATCAGCAGC+CGG | + | chr2_4:51979020-51979039 | None:intergenic | 35.0% | |
| !! | GAGTGAAGGCATTGCAATTT+AGG | - | chr2_4:51976819-51976838 | Msa0333910:intron | 40.0% |
| ! | CATTCTACTAGCTTCACCAA+TGG | + | chr2_4:51977023-51977042 | None:intergenic | 40.0% |
| TGTTGCATTGTAGATCCTCA+TGG | - | chr2_4:51977107-51977126 | Msa0333910:three_prime_UTR | 40.0% | |
| GAACTCCAAAGGTGAACATT+TGG | - | chr2_4:51977129-51977148 | Msa0333910:three_prime_UTR | 40.0% | |
| GAAGTTGCTTACGTTGAAAG+AGG | + | chr2_4:51977311-51977330 | None:intergenic | 40.0% | |
| CTTAAACAAACAGGCCCTTA+AGG | - | chr2_4:51977397-51977416 | Msa0333910:three_prime_UTR | 40.0% | |
| CTGTTCTCAAGTTCCCTTAA+GGG | + | chr2_4:51977414-51977433 | None:intergenic | 40.0% | |
| ACTGTTCTCAAGTTCCCTTA+AGG | + | chr2_4:51977415-51977434 | None:intergenic | 40.0% | |
| TCCTTGGTATAGTAGTTCGA+AGG | + | chr2_4:51977532-51977551 | None:intergenic | 40.0% | |
| !! | AACACGTTGATGATGTCATG+AGG | + | chr2_4:51977593-51977612 | None:intergenic | 40.0% |
| TGATTGCTTCTTTGACTGGA+TGG | - | chr2_4:51977678-51977697 | Msa0333910:CDS | 40.0% | |
| ! | GGATGGACTTTACTCTTCTA+CGG | - | chr2_4:51977695-51977714 | Msa0333910:CDS | 40.0% |
| GGTACGCAAGATTACCTTAT+AGG | - | chr2_4:51977754-51977773 | Msa0333910:intron | 40.0% | |
| TTGTCAATAGCAACCACTAC+CGG | - | chr2_4:51977894-51977913 | Msa0333910:CDS | 40.0% | |
| ! | AGCTGTGTATTTGGTTCAGA+TGG | + | chr2_4:51978119-51978138 | None:intergenic | 40.0% |
| TGTGTTTGCAGCTGTGTATT+TGG | + | chr2_4:51978128-51978147 | None:intergenic | 40.0% | |
| AGAGATGATGAGATGAGAAG+AGG | + | chr2_4:51978185-51978204 | None:intergenic | 40.0% | |
| GAAGAGAGGAGAACAAAGAT+GGG | + | chr2_4:51978219-51978238 | None:intergenic | 40.0% | |
| TACAATCAAGAGACGAAGAG+AGG | + | chr2_4:51978233-51978252 | None:intergenic | 40.0% | |
| CTGTTGTCAAAGCAGAAATG+CGG | + | chr2_4:51978583-51978602 | None:intergenic | 40.0% | |
| CATTTCTGCTTTGACAACAG+AGG | - | chr2_4:51978583-51978602 | Msa0333910:intron | 40.0% | |
| TTGTCATGTCTTACTGCAGA+AGG | - | chr2_4:51978764-51978783 | Msa0333910:intron | 40.0% | |
| TTAAAATCTCAGGCCTTGCT+TGG | + | chr2_4:51978798-51978817 | None:intergenic | 40.0% | |
| ! | TTGTGAAGAGAAGCCAGTTT+TGG | - | chr2_4:51978863-51978882 | Msa0333910:intron | 40.0% |
| ! | TGTGAAGAGAAGCCAGTTTT+GGG | - | chr2_4:51978864-51978883 | Msa0333910:intron | 40.0% |
| AAGCTAATTTATCAGCAGCC+GGG | + | chr2_4:51979019-51979038 | None:intergenic | 40.0% | |
| GCAATCATGACATGAGTCAT+AGG | + | chr2_4:51979085-51979104 | None:intergenic | 40.0% | |
| ! | TGAACGAGTGAAGCGGATTT+GGG | + | chr2_4:51976547-51976566 | None:intergenic | 45.0% |
| ! | ATGAACGAGTGAAGCGGATT+TGG | + | chr2_4:51976548-51976567 | None:intergenic | 45.0% |
| AAGGGAGGGGAATACAATAC+CGG | + | chr2_4:51976593-51976612 | None:intergenic | 45.0% | |
| !! | GAAGGCATTGCAATTTAGGC+TGG | - | chr2_4:51976823-51976842 | Msa0333910:intron | 45.0% |
| AGATCCTCATGGAACTCCAA+AGG | - | chr2_4:51977118-51977137 | Msa0333910:three_prime_UTR | 45.0% | |
| !! | TTCACCTTTGGAGTTCCATG+AGG | + | chr2_4:51977125-51977144 | None:intergenic | 45.0% |
| TCCAAAGGTGAACATTTGGC+AGG | - | chr2_4:51977133-51977152 | Msa0333910:three_prime_UTR | 45.0% | |
| TCCTGCCAAATGTTCACCTT+TGG | + | chr2_4:51977137-51977156 | None:intergenic | 45.0% | |
| ATCCACTGTCTCCATCTAAG+TGG | - | chr2_4:51977156-51977175 | Msa0333910:three_prime_UTR | 45.0% | |
| TTCCACTTAGATGGAGACAG+TGG | + | chr2_4:51977161-51977180 | None:intergenic | 45.0% | |
| GCCTTCGAACTACTATACCA+AGG | - | chr2_4:51977528-51977547 | Msa0333910:three_prime_UTR | 45.0% | |
| TGGACTTTACTCTTCTACGG+TGG | - | chr2_4:51977698-51977717 | Msa0333910:CDS | 45.0% | |
| GGTGGTTACAAGTTCTTCAC+TGG | - | chr2_4:51977716-51977735 | Msa0333910:intron | 45.0% | |
| GGTTACAAGTTCTTCACTGG+TGG | - | chr2_4:51977719-51977738 | Msa0333910:intron | 45.0% | |
| GATGAGATGAGAAGAGGAGA+TGG | + | chr2_4:51978179-51978198 | None:intergenic | 45.0% | |
| CGAAGAGAGGAGAACAAAGA+TGG | + | chr2_4:51978220-51978239 | None:intergenic | 45.0% | |
| !! | GCTTTGGAGGCTTAAAGTGT+TGG | - | chr2_4:51978346-51978365 | Msa0333910:intron | 45.0% |
| ACTGCTAAGAAGTTGCTGTC+CGG | - | chr2_4:51978823-51978842 | Msa0333910:intron | 45.0% | |
| CAGTTTGTGGAATACAACCC+CGG | - | chr2_4:51978998-51979017 | Msa0333910:intron | 45.0% | |
| AGCTAATTTATCAGCAGCCG+GGG | + | chr2_4:51979018-51979037 | None:intergenic | 45.0% | |
| ATCAATCAATCATGGCGGCG+TGG | - | chr2_4:51976476-51976495 | Msa0333910:three_prime_UTR | 50.0% | |
| !! | AAAGGCATCGAAGGAAGGGA+GGG | + | chr2_4:51976607-51976626 | None:intergenic | 50.0% |
| !! | AAAAGGCATCGAAGGAAGGG+AGG | + | chr2_4:51976608-51976627 | None:intergenic | 50.0% |
| !! | CGGAAAAGGCATCGAAGGAA+GGG | + | chr2_4:51976611-51976630 | None:intergenic | 50.0% |
| !! | ACGGAAAAGGCATCGAAGGA+AGG | + | chr2_4:51976612-51976631 | None:intergenic | 50.0% |
| !! | GATGACGGAAAAGGCATCGA+AGG | + | chr2_4:51976616-51976635 | None:intergenic | 50.0% |
| GTTCTTCACTGGTGGCAAGA+AGG | - | chr2_4:51977727-51977746 | Msa0333910:intron | 50.0% | |
| !!! | GCGTCGCGTTTTACTGGTTT+TGG | + | chr2_4:51977941-51977960 | None:intergenic | 50.0% |
| GGTATAAAGCGGGAACGATG+CGG | - | chr2_4:51978014-51978033 | Msa0333910:intron | 50.0% | |
| GTATAAAGCGGGAACGATGC+GGG | - | chr2_4:51978015-51978034 | Msa0333910:intron | 50.0% | |
| GAAGGTTGCAGAACCAAGCA+AGG | - | chr2_4:51978782-51978801 | Msa0333910:intron | 50.0% | |
| CTGCTAAGAAGTTGCTGTCC+GGG | - | chr2_4:51978824-51978843 | Msa0333910:intron | 50.0% | |
| GCTCGGCAAGCAATGAACGT+CGG | - | chr2_4:51976508-51976527 | Msa0333910:three_prime_UTR | 55.0% | |
| ! | AAGCGGATTTGGGTGAGGAG+AGG | + | chr2_4:51976537-51976556 | None:intergenic | 55.0% |
| ! | GAGTGAAGCGGATTTGGGTG+AGG | + | chr2_4:51976542-51976561 | None:intergenic | 55.0% |
| GGAGGGGAATACAATACCGG+AGG | + | chr2_4:51976590-51976609 | None:intergenic | 55.0% | |
| !! | AAGGCATCGAAGGAAGGGAG+GGG | + | chr2_4:51976606-51976625 | None:intergenic | 55.0% |
| CACTGGTGGCAAGAAGGAAG+AGG | - | chr2_4:51977733-51977752 | Msa0333910:intron | 55.0% | |
| AACCACTACCGGCGTTATCG+CGG | - | chr2_4:51977905-51977924 | Msa0333910:intron | 55.0% | |
| TTGGAGAAAGCGGCTGATCC+AGG | - | chr2_4:51977981-51978000 | Msa0333910:intron | 55.0% | |
| TTTATACCCGCAATCGCGCC+TGG | + | chr2_4:51978002-51978021 | None:intergenic | 55.0% | |
| GCGCGATTGCGGGTATAAAG+CGG | - | chr2_4:51978003-51978022 | Msa0333910:intron | 55.0% | |
| CGCGATTGCGGGTATAAAGC+GGG | - | chr2_4:51978004-51978023 | Msa0333910:intron | 55.0% | |
| !! | ACGCGTAGCGGACGCTATTT+CGG | + | chr2_4:51978548-51978567 | None:intergenic | 55.0% |
| TCAAAGCAGAAATGCGGCGC+GGG | + | chr2_4:51978577-51978596 | None:intergenic | 55.0% | |
| GTCAAAGCAGAAATGCGGCG+CGG | + | chr2_4:51978578-51978597 | None:intergenic | 55.0% | |
| GCGGCGATGAACGAGTGAAG+CGG | + | chr2_4:51976554-51976573 | None:intergenic | 60.0% | |
| GCTTCACTCGTTCATCGCCG+CGG | - | chr2_4:51976553-51976572 | Msa0333910:three_prime_UTR | 60.0% | |
| ! | AGCGCTGCGTCGCGTTTTAC+TGG | + | chr2_4:51977947-51977966 | None:intergenic | 60.0% |
| AAACGCGACGCAGCGCTACA+AGG | - | chr2_4:51977950-51977969 | Msa0333910:intron | 60.0% | |
| GGGAACGATGCGGGTCAAAG+CGG | - | chr2_4:51978024-51978043 | Msa0333910:intron | 60.0% | |
| GGAACGATGCGGGTCAAAGC+GGG | - | chr2_4:51978025-51978044 | Msa0333910:intron | 60.0% | |
| !! | CGTAGCGGACGCTATTTCGG+TGG | + | chr2_4:51978545-51978564 | None:intergenic | 60.0% |
| ACTCGTTCATCGCCGCGGCA+TGG | - | chr2_4:51976558-51976577 | Msa0333910:three_prime_UTR | 65.0% | |
| ! | GGCGGAGCGCTTGGAGAAAG+CGG | - | chr2_4:51977971-51977990 | Msa0333910:intron | 65.0% |
| GGCTGATCCAGGCGCGATTG+CGG | - | chr2_4:51977992-51978011 | Msa0333910:intron | 65.0% | |
| GCTGATCCAGGCGCGATTGC+GGG | - | chr2_4:51977993-51978012 | Msa0333910:intron | 65.0% | |
| ! | CGGACGCTATTTCGGTGGCG+CGG | + | chr2_4:51978540-51978559 | None:intergenic | 65.0% |
| CAGAAATGCGGCGCGGGATG+CGG | + | chr2_4:51978571-51978590 | None:intergenic | 65.0% | |
| CGGCGTGGACAGCAGCAGCT+CGG | - | chr2_4:51976491-51976510 | Msa0333910:three_prime_UTR | 70.0% | |
| GTTCATCGCCGCGGCATGGC+TGG | - | chr2_4:51976562-51976581 | Msa0333910:three_prime_UTR | 70.0% | |
| CGGAGGAACCAGCCATGCCG+CGG | + | chr2_4:51976573-51976592 | None:intergenic | 70.0% | |
| ! | CGCGGCATGGCTGGTTCCTC+CGG | - | chr2_4:51976571-51976590 | Msa0333910:three_prime_UTR | 70.0% |
| CGCCGCGATAACGCCGGTAG+TGG | + | chr2_4:51977910-51977929 | None:intergenic | 70.0% | |
| CTACCGGCGTTATCGCGGCG+CGG | - | chr2_4:51977910-51977929 | Msa0333910:intron | 70.0% | |
| TACCGGCGTTATCGCGGCGC+GGG | - | chr2_4:51977911-51977930 | Msa0333910:intron | 70.0% | |
| CGCGACGCAGCGCTACAAGG+CGG | - | chr2_4:51977953-51977972 | Msa0333910:intron | 70.0% | |
| ! | GCGCTACAAGGCGGAGCGCT+TGG | - | chr2_4:51977962-51977981 | Msa0333910:intron | 70.0% |
| ACCGGCGTTATCGCGGCGCG+GGG | - | chr2_4:51977912-51977931 | Msa0333910:intron | 75.0% | |
| CGCGGGATGCGGACGCGTAG+CGG | + | chr2_4:51978560-51978579 | None:intergenic | 75.0% | |
| ! | GCCCCGCGCCGCGATAACGC+CGG | + | chr2_4:51977916-51977935 | None:intergenic | 80.0% |
| ! | GGCGTTATCGCGGCGCGGGG+CGG | - | chr2_4:51977915-51977934 | Msa0333910:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 51976452 | 51979145 | 51976452 | ID=Msa0333910;Name=Msa0333910 |
| chr2_4 | mRNA | 51976452 | 51979145 | 51976452 | ID=Msa0333910-mRNA-1;Parent=Msa0333910;Name=Msa0333910-mRNA-1;_AED=0.14;_eAED=0.14;_QI=35|1|1|1|0.75|0.8|5|970|127 |
| chr2_4 | exon | 51976452 | 51976814 | 51976452 | ID=Msa0333910-mRNA-1:exon:15624;Parent=Msa0333910-mRNA-1 |
| chr2_4 | exon | 51976993 | 51977725 | 51976993 | ID=Msa0333910-mRNA-1:exon:15623;Parent=Msa0333910-mRNA-1 |
| chr2_4 | exon | 51977843 | 51977923 | 51977843 | ID=Msa0333910-mRNA-1:exon:15622;Parent=Msa0333910-mRNA-1 |
| chr2_4 | exon | 51978407 | 51978477 | 51978407 | ID=Msa0333910-mRNA-1:exon:15621;Parent=Msa0333910-mRNA-1 |
| chr2_4 | exon | 51979005 | 51979145 | 51979005 | ID=Msa0333910-mRNA-1:exon:15620;Parent=Msa0333910-mRNA-1 |
| chr2_4 | five_prime_UTR | 51979111 | 51979145 | 51979111 | ID=Msa0333910-mRNA-1:five_prime_utr;Parent=Msa0333910-mRNA-1 |
| chr2_4 | CDS | 51979005 | 51979110 | 51979005 | ID=Msa0333910-mRNA-1:cds;Parent=Msa0333910-mRNA-1 |
| chr2_4 | CDS | 51978407 | 51978477 | 51978407 | ID=Msa0333910-mRNA-1:cds;Parent=Msa0333910-mRNA-1 |
| chr2_4 | CDS | 51977843 | 51977923 | 51977843 | ID=Msa0333910-mRNA-1:cds;Parent=Msa0333910-mRNA-1 |
| chr2_4 | CDS | 51977600 | 51977725 | 51977600 | ID=Msa0333910-mRNA-1:cds;Parent=Msa0333910-mRNA-1 |
| chr2_4 | three_prime_UTR | 51976993 | 51977599 | 51976993 | ID=Msa0333910-mRNA-1:three_prime_utr;Parent=Msa0333910-mRNA-1 |
| chr2_4 | three_prime_UTR | 51976452 | 51976814 | 51976452 | ID=Msa0333910-mRNA-1:three_prime_utr;Parent=Msa0333910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
