Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0350880 | XP_003598896.1 | 59.783 | 92 | 29 | 3 | 315 | 398 | 78 | 169 | 4.92e-20 | 97.8 |
| Msa0350880 | XP_003598896.1 | 97.458 | 118 | 3 | 0 | 1 | 118 | 1 | 118 | 1.07e-77 | 248 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0350880 | sp|Q39096|ERD15_ARATH | 52.500 | 80 | 35 | 2 | 1 | 77 | 1 | 80 | 1.35e-21 | 94.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0350880 | B7FH52 | 59.783 | 92 | 29 | 3 | 315 | 398 | 78 | 169 | 2.35e-20 | 97.8 |
| Msa0350880 | B7FH52 | 97.458 | 118 | 3 | 0 | 1 | 118 | 1 | 118 | 5.10e-78 | 248 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044000 | Msa0350880 | 0.811020 | 8.626347e-51 | -8.615850e-47 |
| Msa0090570 | Msa0350880 | 0.816375 | 5.712595e-52 | -8.615850e-47 |
| Msa0127800 | Msa0350880 | 0.816264 | 6.049338e-52 | -8.615850e-47 |
| Msa0156370 | Msa0350880 | 0.808733 | 2.679455e-50 | -8.615850e-47 |
| Msa0229230 | Msa0350880 | 0.800091 | 1.695336e-48 | -8.615850e-47 |
| Msa0265430 | Msa0350880 | 0.825521 | 4.479090e-54 | -8.615850e-47 |
| Msa0340380 | Msa0350880 | 0.837309 | 5.609822e-57 | -8.615850e-47 |
| Msa0350880 | Msa0357900 | 0.800031 | 1.743993e-48 | -8.615850e-47 |
| Msa0350880 | Msa0445330 | 0.856174 | 3.846138e-62 | -8.615850e-47 |
| Msa0350880 | Msa0492890 | 0.971111 | 1.188931e-132 | -8.615850e-47 |
| Msa0350880 | Msa0615710 | 0.810422 | 1.162144e-50 | -8.615850e-47 |
| Msa0350880 | Msa0707250 | 0.810072 | 1.382217e-50 | -8.615850e-47 |
| Msa0350880 | Msa0717230 | -0.814995 | 1.159856e-51 | -8.615850e-47 |
| Msa0350880 | Msa0799680 | -0.810302 | 1.233333e-50 | -8.615850e-47 |
| Msa0350880 | Msa0831110 | 0.803444 | 3.475830e-49 | -8.615850e-47 |
| Msa0350880 | Msa0892120 | 0.810295 | 1.237544e-50 | -8.615850e-47 |
| Msa0350880 | Msa0960600 | 0.811911 | 5.523783e-51 | -8.615850e-47 |
| Msa0350880 | Msa1029050 | 0.804663 | 1.938660e-49 | -8.615850e-47 |
| Msa0350880 | Msa1037420 | 0.848497 | 5.901412e-60 | -8.615850e-47 |
| Msa0350880 | Msa1048220 | 0.826310 | 2.910772e-54 | -8.615850e-47 |
| Msa0350880 | Msa1123810 | 0.832160 | 1.107770e-55 | -8.615850e-47 |
| Msa0350880 | Msa1148910 | 0.800542 | 1.372361e-48 | -8.615850e-47 |
| Msa0350880 | Msa1211230 | -0.842642 | 2.282525e-58 | -8.615850e-47 |
| Msa0350880 | Msa1211420 | -0.823896 | 1.081811e-53 | -8.615850e-47 |
| Msa0350880 | Msa1231840 | 0.813986 | 1.938943e-51 | -8.615850e-47 |
| Msa0350880 | Msa1254730 | 0.803883 | 2.817901e-49 | -8.615850e-47 |
| Msa0350880 | Msa1280320 | 0.807852 | 4.128313e-50 | -8.615850e-47 |
| Msa0350880 | Msa1294820 | 0.804973 | 1.670439e-49 | -8.615850e-47 |
| Msa0350880 | Msa1299400 | -0.823569 | 1.290768e-53 | -8.615850e-47 |
| Msa0350880 | Msa1331050 | -0.844623 | 6.739897e-59 | -8.615850e-47 |
| Msa0350880 | Msa1385770 | 0.820607 | 6.273799e-53 | -8.615850e-47 |
| Msa0350880 | Msa1393570 | 0.814954 | 1.183983e-51 | -8.615850e-47 |
| Msa0350880 | Msa1409240 | 0.819747 | 9.875690e-53 | -8.615850e-47 |
| Msa0350880 | Msa1434140 | 0.820526 | 6.546943e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0350880 | MtrunA17_Chr3g0085831 | 97.458 | 118 | 3 | 0 | 1 | 118 | 1 | 118 | 9.82e-82 | 248 |
| Msa0350880 | MtrunA17_Chr3g0085831 | 59.783 | 92 | 29 | 3 | 315 | 398 | 78 | 169 | 4.52e-24 | 97.8 |
| Msa0350880 | MtrunA17_Chr8g0359781 | 95.312 | 64 | 3 | 0 | 125 | 188 | 91 | 154 | 7.47e-34 | 131 |
| Msa0350880 | MtrunA17_Chr7g0256851 | 50.476 | 105 | 48 | 3 | 1 | 104 | 1 | 102 | 1.58e-29 | 110 |
| Msa0350880 | MtrunA17_Chr5g0437861 | 65.116 | 43 | 15 | 0 | 8 | 50 | 11 | 53 | 3.14e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0350880 | AT2G41430.3 | 52.500 | 80 | 35 | 2 | 1 | 77 | 1 | 80 | 6.24e-24 | 96.3 |
| Msa0350880 | AT2G41430.5 | 52.500 | 80 | 35 | 2 | 1 | 77 | 1 | 80 | 1.38e-22 | 94.0 |
| Msa0350880 | AT2G41430.4 | 52.500 | 80 | 35 | 2 | 1 | 77 | 1 | 80 | 1.38e-22 | 94.0 |
| Msa0350880 | AT2G41430.2 | 52.500 | 80 | 35 | 2 | 1 | 77 | 1 | 80 | 1.38e-22 | 94.0 |
| Msa0350880 | AT2G41430.1 | 52.500 | 80 | 35 | 2 | 1 | 77 | 1 | 80 | 1.38e-22 | 94.0 |
| Msa0350880 | AT4G14270.1 | 46.753 | 77 | 38 | 2 | 2 | 77 | 3 | 77 | 2.68e-18 | 81.3 |
| Msa0350880 | AT4G14270.2 | 46.753 | 77 | 38 | 2 | 2 | 77 | 3 | 77 | 2.68e-18 | 81.3 |
Find 108 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAAATCTTGGAATGTTTA+TGG | 0.107441 | 3_1:+16311703 | Msa0350880:three_prime_UTR |
| TGGCGTAAAATGAAAGAAAA+TGG | 0.226691 | 3_1:+16310071 | Msa0350880:CDS |
| CGACATGGTTTCATAACTAT+TGG | 0.282742 | 3_1:+16308800 | Msa0350880:CDS |
| GCTTCCCGGTTAAGTGAATT+TGG | 0.304529 | 3_1:+16309569 | Msa0350880:CDS |
| CCATCACTCACTTCGCTTCC+CGG | 0.308607 | 3_1:+16309555 | Msa0350880:CDS |
| GGGTGGATAAACTTATAAAA+TGG | 0.317843 | 3_1:-16311960 | None:intergenic |
| ATCCGTTCATGCTTCCTTCA+AGG | 0.330139 | 3_1:+16309637 | Msa0350880:CDS |
| TGTGGAATTGAAGTTGAAAA+TGG | 0.332556 | 3_1:+16309998 | Msa0350880:CDS |
| GTCCTGTTCAGTGTGGTAAT+TGG | 0.336286 | 3_1:+16311821 | Msa0350880:three_prime_UTR |
| TGCTGCTGCTGCGGAGGCTG+CGG | 0.351261 | 3_1:+16309800 | Msa0350880:CDS |
| GACTTGACACCCCTTTCCTT+TGG | 0.352346 | 3_1:-16311410 | None:intergenic |
| CGCGATCAGTTCGGCCTTGA+AGG | 0.362738 | 3_1:-16309651 | None:intergenic |
| GCTGGCTTCTCAAAGTGCTT+TGG | 0.365521 | 3_1:-16311446 | None:intergenic |
| GAGGACCAAATTCACTTAAC+CGG | 0.375536 | 3_1:-16309574 | None:intergenic |
| AGTTTGAACGGCTCAAATCT+TGG | 0.379568 | 3_1:+16311692 | Msa0350880:three_prime_UTR |
| GTCCCAAATGTGACTCTATC+AGG | 0.380905 | 3_1:-16309715 | None:intergenic |
| ATTTCTCAAACTCATTATCT+AGG | 0.388062 | 3_1:-16308945 | None:intergenic |
| ATGTTGTAAGTGCATGGATT+TGG | 0.409675 | 3_1:-16309596 | None:intergenic |
| GTTGTGATGGCATTGGTAAC+TGG | 0.417835 | 3_1:+16308676 | None:intergenic |
| AGTTGAATGATCTGAGAGTA+GGG | 0.422763 | 3_1:-16309493 | None:intergenic |
| GGTATGAAGAGAGGTGCATT+TGG | 0.424438 | 3_1:-16308718 | None:intergenic |
| TCAACAGGATCATCCATAAC+TGG | 0.427432 | 3_1:-16308997 | None:intergenic |
| CGTCCTGATAGAGTCACATT+TGG | 0.429560 | 3_1:+16309712 | Msa0350880:CDS |
| CATGTAGTGTATTTAATGGT+AGG | 0.436501 | 3_1:+16311658 | Msa0350880:three_prime_UTR |
| AGCTCAAGAGTGTCCAGTTA+TGG | 0.442394 | 3_1:+16308984 | Msa0350880:CDS |
| CGAGGTTGGTGAATTCTTTG+AGG | 0.442641 | 3_1:-16311494 | None:intergenic |
| AAAGGAAGGGATGGAGAGGA+AGG | 0.450240 | 3_1:-16309462 | None:intergenic |
| GATCTTGTCACCAAAGGAAA+GGG | 0.460246 | 3_1:+16311400 | Msa0350880:CDS |
| TGTTGCATGAACGTTGTTTG+TGG | 0.466630 | 3_1:+16310029 | Msa0350880:CDS |
| ATCCAATTACCACACTGAAC+AGG | 0.468231 | 3_1:-16311823 | None:intergenic |
| GAGTTGAATGATCTGAGAGT+AGG | 0.476350 | 3_1:-16309494 | None:intergenic |
| TAACTTGTGTATAGAGAAGA+AGG | 0.484111 | 3_1:+16311600 | Msa0350880:three_prime_UTR |
| GTAGAGTATCCATTGTCGTT+GGG | 0.484625 | 3_1:-16309771 | None:intergenic |
| AACGTTTCTCTTAACGAGGT+TGG | 0.487248 | 3_1:-16311508 | None:intergenic |
| GTGGAACCTCTATGTCGATT+CGG | 0.489960 | 3_1:+16310048 | Msa0350880:CDS |
| AGTGAGTGATGGTTTGAAAT+CGG | 0.490116 | 3_1:-16309544 | None:intergenic |
| GTCCTGATAGAGTCACATTT+GGG | 0.490734 | 3_1:+16309713 | Msa0350880:CDS |
| GATGATGTGTTGAATGAATG+TGG | 0.493851 | 3_1:+16310301 | Msa0350880:CDS |
| GTTAGCAAGGTTGAAGCAAA+TGG | 0.495654 | 3_1:+16309828 | Msa0350880:CDS |
| GTTGCAAGGCGCGATCAGTT+CGG | 0.508900 | 3_1:-16309660 | None:intergenic |
| CATTTCATCGAACAGTTGCA+AGG | 0.512620 | 3_1:-16309674 | None:intergenic |
| AGGGGTGTCAAGTCCCCTAT+CGG | 0.514898 | 3_1:+16311419 | Msa0350880:CDS |
| CTATTGGTTGAGCCAGCATA+AGG | 0.515423 | 3_1:+16308816 | Msa0350880:CDS |
| GGCGTAAAATGAAAGAAAAT+GGG | 0.516089 | 3_1:+16310072 | Msa0350880:CDS |
| GTAGGGGTGCAGCGAAAGGA+AGG | 0.519053 | 3_1:-16309476 | None:intergenic |
| TTCTTTGAGGTGCACACTTG+AGG | 0.519384 | 3_1:-16311481 | None:intergenic |
| GATGGAGAGGAAGGTTTGAA+TGG | 0.519822 | 3_1:-16309453 | None:intergenic |
| CAAAATCTTCCTCCTTATGC+TGG | 0.523223 | 3_1:-16308828 | None:intergenic |
| TTCGCGAAGCCCAACGACAA+TGG | 0.524409 | 3_1:+16309762 | Msa0350880:CDS |
| TTGAGGTTAACATGTTGTGC+TGG | 0.529132 | 3_1:-16311464 | None:intergenic |
| TACTACATCTGCTGCTGCTG+CGG | 0.534296 | 3_1:+16309791 | Msa0350880:CDS |
| GAAGGAAGCATGAACGGATG+AGG | 0.534306 | 3_1:-16309633 | None:intergenic |
| ACCTGCTGCATTTCGTCAAG+TGG | 0.534431 | 3_1:+16308738 | Msa0350880:CDS |
| TACATCTGCTGCTGCTGCGG+AGG | 0.537540 | 3_1:+16309794 | Msa0350880:CDS |
| ATGATGTGTTGAATGAATGT+GGG | 0.539639 | 3_1:+16310302 | Msa0350880:CDS |
| TTCACAAGCTCCCACCATTG+AGG | 0.540449 | 3_1:-16308772 | None:intergenic |
| GAGAGTAGGGGTGCAGCGAA+AGG | 0.543564 | 3_1:-16309480 | None:intergenic |
| GGGGTGTCAAGTCCCCTATC+GGG | 0.544218 | 3_1:+16311420 | Msa0350880:CDS |
| TTGTAAGTGCATGGATTTGG+AGG | 0.549024 | 3_1:-16309593 | None:intergenic |
| AAGTGCTTTGGAGACCCGAT+AGG | 0.549595 | 3_1:-16311434 | None:intergenic |
| TGGACACTCTTGAGCTTCGT+CGG | 0.549850 | 3_1:-16308977 | None:intergenic |
| TCCACTTGACGAAATGCAGC+AGG | 0.554768 | 3_1:-16308739 | None:intergenic |
| GGCCTTGAAGGAAGCATGAA+CGG | 0.556630 | 3_1:-16309639 | None:intergenic |
| ACGCCACCGAATCGACATAG+AGG | 0.558823 | 3_1:-16310054 | None:intergenic |
| AGATCTTGTCACCAAAGGAA+AGG | 0.559083 | 3_1:+16311399 | Msa0350880:CDS |
| AGTGCTTTGGAGACCCGATA+GGG | 0.559193 | 3_1:-16311433 | None:intergenic |
| GGCTGCGGTTGCAGTTAGCA+AGG | 0.562932 | 3_1:+16309815 | Msa0350880:CDS |
| AGGACCAAATTCACTTAACC+GGG | 0.565304 | 3_1:-16309573 | None:intergenic |
| ATCTTAATCAGGTGTTAACA+AGG | 0.566714 | 3_1:+16311358 | Msa0350880:intron |
| AGTAGAGTATCCATTGTCGT+TGG | 0.567004 | 3_1:-16309772 | None:intergenic |
| TGTGTTGAATGAATGTGGGT+TGG | 0.568445 | 3_1:+16310306 | Msa0350880:CDS |
| GTGAGACTTTCAAGTTTGAA+CGG | 0.569472 | 3_1:+16311680 | Msa0350880:three_prime_UTR |
| TCTCAAGATCTTGTCACCAA+AGG | 0.579452 | 3_1:+16311394 | Msa0350880:CDS |
| TGCTGCATTTCGTCAAGTGG+AGG | 0.583030 | 3_1:+16308741 | Msa0350880:CDS |
| CCGGGAAGCGAAGTGAGTGA+TGG | 0.586766 | 3_1:-16309555 | None:intergenic |
| AATGGTTAATGTAAGTTACA+TGG | 0.588591 | 3_1:+16311764 | Msa0350880:three_prime_UTR |
| TTAAACATGGAACCATGTGA+TGG | 0.588720 | 3_1:+16311935 | Msa0350880:three_prime_UTR |
| AGTGAGGAGAGCATTGAGGA+GGG | 0.592253 | 3_1:-16309516 | None:intergenic |
| AATGGGAAGAAAGAAAGAGA+AGG | 0.592521 | 3_1:+16310089 | Msa0350880:CDS |
| TTTGAAATCGGCGGCAAGTG+AGG | 0.596638 | 3_1:-16309532 | None:intergenic |
| CGGATGAGGATGAACGGATG+AGG | 0.597038 | 3_1:-16309619 | None:intergenic |
| AGCTTGTGAAATCTTCGACA+TGG | 0.599712 | 3_1:+16308785 | Msa0350880:CDS |
| ATGAGGATGTTGTAAGTGCA+TGG | 0.603984 | 3_1:-16309602 | None:intergenic |
| ATGACAACTTTATTTAAACA+TGG | 0.605146 | 3_1:+16311922 | Msa0350880:three_prime_UTR |
| AGCGAAAGGAAGGGATGGAG+AGG | 0.605535 | 3_1:-16309466 | None:intergenic |
| AAGTGAGGAGAGCATTGAGG+AGG | 0.609121 | 3_1:-16309517 | None:intergenic |
| CATGAACGGATGAGGATGAA+CGG | 0.613880 | 3_1:-16309625 | None:intergenic |
| AGTTATGGATGATCCTGTTG+AGG | 0.618736 | 3_1:+16308999 | Msa0350880:CDS |
| AAGGTTTGAATGGCACGTGA+AGG | 0.621344 | 3_1:-16309443 | None:intergenic |
| AAGGTTGAAGCAAATGGCAA+TGG | 0.623465 | 3_1:+16309834 | Msa0350880:CDS |
| GCACGTGAAGGAAGAAGATG+AGG | 0.624950 | 3_1:-16309431 | None:intergenic |
| GGCAAGTGAGGAGAGCATTG+AGG | 0.625794 | 3_1:-16309520 | None:intergenic |
| CTGACAAGTTGTGATGGCAT+TGG | 0.626958 | 3_1:+16308669 | None:intergenic |
| TAGGGGTGCAGCGAAAGGAA+GGG | 0.629782 | 3_1:-16309475 | None:intergenic |
| TGTGTATAGAGAAGAAGGTG+TGG | 0.633118 | 3_1:+16311605 | Msa0350880:three_prime_UTR |
| TTGGTTGAGCCAGCATAAGG+AGG | 0.633628 | 3_1:+16308819 | Msa0350880:CDS |
| GTGCTTTGGAGACCCGATAG+GGG | 0.634460 | 3_1:-16311432 | None:intergenic |
| GGTGCAGCGAAAGGAAGGGA+TGG | 0.638637 | 3_1:-16309471 | None:intergenic |
| ATCTTGTCACCAAAGGAAAG+GGG | 0.652126 | 3_1:+16311401 | Msa0350880:CDS |
| GAACCTCTATGTCGATTCGG+TGG | 0.657336 | 3_1:+16310051 | Msa0350880:CDS |
| TATAAAATGGAACCATCACA+TGG | 0.659435 | 3_1:-16311947 | None:intergenic |
| ATTCAACGTTTCTCTTAACG+AGG | 0.660964 | 3_1:-16311512 | None:intergenic |
| GACTCTATCAGGACGGACGT+TGG | 0.662860 | 3_1:-16309704 | None:intergenic |
| AATGCAGCAGGTATGAAGAG+AGG | 0.675950 | 3_1:-16308727 | None:intergenic |
| GAGTGATGGTTTGAAATCGG+CGG | 0.678603 | 3_1:-16309541 | None:intergenic |
| TAGGTGTGTCCTGTTCAGTG+TGG | 0.680803 | 3_1:+16311814 | Msa0350880:three_prime_UTR |
| CAAATGTGACTCTATCAGGA+CGG | 0.686194 | 3_1:-16309711 | None:intergenic |
| GTTGAATGATCTGAGAGTAG+GGG | 0.689944 | 3_1:-16309492 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATCATTATAATAATATTT+TGG | + | chr3_1:16309092-16309111 | Msa0350880:intron | 10.0% |
| !! | AAAAAATCAGAAAAAAGAAA+AGG | + | chr3_1:16309357-16309376 | Msa0350880:intron | 15.0% |
| !!! | TTCTATTTCAATTTTGAATT+CGG | + | chr3_1:16309914-16309933 | Msa0350880:intron | 15.0% |
| !!! | AATACTTTTTCAAACTAAAT+AGG | + | chr3_1:16310857-16310876 | Msa0350880:intron | 15.0% |
| !! | TAGTTTAAAAATCATACAAA+GGG | + | chr3_1:16311028-16311047 | Msa0350880:intron | 15.0% |
| !!! | TTCATTTTGAAATAAATGAA+TGG | + | chr3_1:16311746-16311765 | Msa0350880:three_prime_UTR | 15.0% |
| !!! | AAGCATTGAATCTAATTTAT+TGG | + | chr3_1:16309042-16309061 | Msa0350880:intron | 20.0% |
| !! | TAATTCATTATTTACACATG+TGG | - | chr3_1:16309269-16309288 | None:intergenic | 20.0% |
| !! | AGAAGAAGAGATAATTAATT+AGG | + | chr3_1:16310376-16310395 | Msa0350880:intron | 20.0% |
| !! | TAATTAATTAATTACACACG+TGG | + | chr3_1:16310473-16310492 | Msa0350880:intron | 20.0% |
| !! | AAGTATGAAAACTACAATTA+TGG | - | chr3_1:16310573-16310592 | None:intergenic | 20.0% |
| !!! | TAATTGTAGTTTTCATACTT+AGG | + | chr3_1:16310573-16310592 | Msa0350880:intron | 20.0% |
| !!! | AATTGTAGTTTTCATACTTA+GGG | + | chr3_1:16310574-16310593 | Msa0350880:intron | 20.0% |
| !! | CTAGTTTAAAAATCATACAA+AGG | + | chr3_1:16311027-16311046 | Msa0350880:intron | 20.0% |
| !!! | TTACATATTTTGTGATTAGT+AGG | - | chr3_1:16311319-16311338 | None:intergenic | 20.0% |
| !!! | AATTGATTTCTATCTTAATC+AGG | + | chr3_1:16311347-16311366 | Msa0350880:intron | 20.0% |
| !!! | TTTTCATGTAGTGTATTTAA+TGG | + | chr3_1:16311654-16311673 | Msa0350880:three_prime_UTR | 20.0% |
| !!! | AGTCTTTGAATTTATGTTTT+AGG | + | chr3_1:16311795-16311814 | Msa0350880:three_prime_UTR | 20.0% |
| !!! | TTTTCCATTTGAAAAGAAAA+TGG | + | chr3_1:16311868-16311887 | Msa0350880:three_prime_UTR | 20.0% |
| !!! | TTAACCATTTTCTTTTCAAA+TGG | - | chr3_1:16311875-16311894 | None:intergenic | 20.0% |
| !!! | ATGACAACTTTATTTAAACA+TGG | + | chr3_1:16311922-16311941 | Msa0350880:three_prime_UTR | 20.0% |
| ! | ATTTCTCAAACTCATTATCT+AGG | - | chr3_1:16308948-16308967 | None:intergenic | 25.0% |
| !!! | TGCAAGTTTTTGAAAGTTAA+GGG | - | chr3_1:16310606-16310625 | None:intergenic | 25.0% |
| !!! | TTGCAAGTTTTTGAAAGTTA+AGG | - | chr3_1:16310605-16310624 | None:intergenic | 25.0% |
| !! | CTTTCAAAAACTTGCAATTT+TGG | + | chr3_1:16309140-16309159 | Msa0350880:intron | 25.0% |
| !! | AAATTGTGGTTTTCATACAT+GGG | - | chr3_1:16309169-16309188 | None:intergenic | 25.0% |
| !! | AAAATTGTGGTTTTCATACA+TGG | - | chr3_1:16309170-16309189 | None:intergenic | 25.0% |
| !!! | ATGAGTTGATTCAAATTGTT+AGG | + | chr3_1:16309945-16309964 | Msa0350880:intron | 25.0% |
| !!! | TGAGTTGATTCAAATTGTTA+GGG | + | chr3_1:16309946-16309965 | Msa0350880:intron | 25.0% |
| ! | ATATTGTTGTGAATTTGTGA+AGG | + | chr3_1:16309974-16309993 | Msa0350880:intron | 25.0% |
| !! | ATTGTAGTTTTCATACTTAG+GGG | + | chr3_1:16310575-16310594 | Msa0350880:intron | 25.0% |
| !! | CTTTCAAAAACTTGCAATTT+TGG | - | chr3_1:16309140-16309159 | None:intergenic | 25.0% |
| !!! | TTGCAAGTTTTTGAAAGTTA+AGG | + | chr3_1:16310605-16310624 | Msa0350880:intron | 25.0% |
| !!! | TGCAAGTTTTTGAAAGTTAA+GGG | + | chr3_1:16310606-16310625 | Msa0350880:intron | 25.0% |
| ! | ATGTACAAATCTTTGAACAT+AGG | + | chr3_1:16310700-16310719 | Msa0350880:intron | 25.0% |
| ! | GATTAAATCCAAGACATATA+AGG | - | chr3_1:16310921-16310940 | None:intergenic | 25.0% |
| ! | ATATGAATTGCCTTTACTTT+AGG | - | chr3_1:16311151-16311170 | None:intergenic | 25.0% |
| !! | TGTCTTTGTATTTTTCTTGT+TGG | + | chr3_1:16311631-16311650 | Msa0350880:three_prime_UTR | 25.0% |
| ! | AATGGTTAATGTAAGTTACA+TGG | + | chr3_1:16311764-16311783 | Msa0350880:three_prime_UTR | 25.0% |
| !! | TTTTGATCTTGGTATTGAAG+AGG | + | chr3_1:16308912-16308931 | Msa0350880:CDS | 30.0% |
| !! | AAGTTTTTGAAAGTTAAGGG+GGG | - | chr3_1:16310609-16310628 | None:intergenic | 30.0% |
| !! | CAAGTTTTTGAAAGTTAAGG+GGG | - | chr3_1:16310608-16310627 | None:intergenic | 30.0% |
| !! | GCAAGTTTTTGAAAGTTAAG+GGG | - | chr3_1:16310607-16310626 | None:intergenic | 30.0% |
| ! | AATTGTGGTTTTCATACATG+GGG | - | chr3_1:16309168-16309187 | None:intergenic | 30.0% |
| TCAGAAAAAAGAAAAGGAAG+AGG | + | chr3_1:16309363-16309382 | Msa0350880:intron | 30.0% | |
| TGTGGAATTGAAGTTGAAAA+TGG | + | chr3_1:16309998-16310017 | Msa0350880:CDS | 30.0% | |
| TGGCGTAAAATGAAAGAAAA+TGG | + | chr3_1:16310071-16310090 | Msa0350880:CDS | 30.0% | |
| GGCGTAAAATGAAAGAAAAT+GGG | + | chr3_1:16310072-16310091 | Msa0350880:CDS | 30.0% | |
| TCATCACAACAACAAAAATC+AGG | - | chr3_1:16310265-16310284 | None:intergenic | 30.0% | |
| ATGATGTGTTGAATGAATGT+GGG | + | chr3_1:16310302-16310321 | Msa0350880:CDS | 30.0% | |
| !! | ATGTTGATGATGATGAATGT+GGG | + | chr3_1:16310329-16310348 | Msa0350880:intron | 30.0% |
| AAAAGGATGAAATGTGCAAT+GGG | + | chr3_1:16310531-16310550 | Msa0350880:intron | 30.0% | |
| !! | GCAAGTTTTTGAAAGTTAAG+GGG | + | chr3_1:16310607-16310626 | Msa0350880:intron | 30.0% |
| !! | CAAGTTTTTGAAAGTTAAGG+GGG | + | chr3_1:16310608-16310627 | Msa0350880:intron | 30.0% |
| !! | AAGTTTTTGAAAGTTAAGGG+GGG | + | chr3_1:16310609-16310628 | Msa0350880:intron | 30.0% |
| !!! | TATCACCACATACACTTTTT+TGG | - | chr3_1:16310895-16310914 | None:intergenic | 30.0% |
| TGATACAACCTTATATGTCT+TGG | + | chr3_1:16310910-16310929 | Msa0350880:intron | 30.0% | |
| ATTTAATCGATATGTACCGA+CGG | + | chr3_1:16310933-16310952 | Msa0350880:intron | 30.0% | |
| GTAAAACAAAATTACACCGT+CGG | - | chr3_1:16310952-16310971 | None:intergenic | 30.0% | |
| TGTCAATCAATTGCAATCAT+TGG | + | chr3_1:16310974-16310993 | Msa0350880:intron | 30.0% | |
| !! | AAATCGATTTGATACACTGT+CGG | - | chr3_1:16311091-16311110 | None:intergenic | 30.0% |
| ! | ACATTAGATTTACTAGCTTC+GGG | - | chr3_1:16311214-16311233 | None:intergenic | 30.0% |
| ! | CACATTAGATTTACTAGCTT+CGG | - | chr3_1:16311215-16311234 | None:intergenic | 30.0% |
| ATCTTAATCAGGTGTTAACA+AGG | + | chr3_1:16311358-16311377 | Msa0350880:intron | 30.0% | |
| ! | TAACTTGTGTATAGAGAAGA+AGG | + | chr3_1:16311600-16311619 | Msa0350880:three_prime_UTR | 30.0% |
| CATGTAGTGTATTTAATGGT+AGG | + | chr3_1:16311658-16311677 | Msa0350880:three_prime_UTR | 30.0% | |
| CTCAAATCTTGGAATGTTTA+TGG | + | chr3_1:16311703-16311722 | Msa0350880:three_prime_UTR | 30.0% | |
| TATAAAATGGAACCATCACA+TGG | - | chr3_1:16311950-16311969 | None:intergenic | 30.0% | |
| CGACATGGTTTCATAACTAT+TGG | + | chr3_1:16308800-16308819 | Msa0350880:CDS | 35.0% | |
| ! | CTGTCAGAAACTTTTGATCT+TGG | + | chr3_1:16308901-16308920 | Msa0350880:CDS | 35.0% |
| ATTCAATGCTTACCATGAAC+AGG | - | chr3_1:16309033-16309052 | None:intergenic | 35.0% | |
| ! | ATTGTGGTTTTCATACATGG+GGG | - | chr3_1:16309167-16309186 | None:intergenic | 35.0% |
| AAAAGGACCAAATGTGCAAA+GGG | - | chr3_1:16309211-16309230 | None:intergenic | 35.0% | |
| CTTGGTCAAAATTGACCAAA+AGG | - | chr3_1:16309228-16309247 | None:intergenic | 35.0% | |
| TCTGAGTGATGAATGAATGA+AGG | - | chr3_1:16309400-16309419 | None:intergenic | 35.0% | |
| AGTTGAATGATCTGAGAGTA+GGG | - | chr3_1:16309496-16309515 | None:intergenic | 35.0% | |
| ! | AGTGAGTGATGGTTTGAAAT+CGG | - | chr3_1:16309547-16309566 | None:intergenic | 35.0% |
| ATGTTGTAAGTGCATGGATT+TGG | - | chr3_1:16309599-16309618 | None:intergenic | 35.0% | |
| ! | GTTAATCCATGGTTTGTGTA+AGG | + | chr3_1:16309738-16309757 | Msa0350880:intron | 35.0% |
| TTGTGAATTTGTGAAGGTTG+TGG | + | chr3_1:16309980-16309999 | Msa0350880:intron | 35.0% | |
| AATGGGAAGAAAGAAAGAGA+AGG | + | chr3_1:16310089-16310108 | Msa0350880:CDS | 35.0% | |
| AGGAATCGAGGAAATTGAAA+GGG | + | chr3_1:16310114-16310133 | Msa0350880:intron | 35.0% | |
| CAAGCAAGAAAAGCTATCTA+CGG | - | chr3_1:16310174-16310193 | None:intergenic | 35.0% | |
| GAATCTTTGTAAGATCTGCA+AGG | - | chr3_1:16310207-16310226 | None:intergenic | 35.0% | |
| GATGATGTGTTGAATGAATG+TGG | + | chr3_1:16310301-16310320 | Msa0350880:CDS | 35.0% | |
| !! | GATGTTGATGATGATGAATG+TGG | + | chr3_1:16310328-16310347 | Msa0350880:intron | 35.0% |
| !! | TCCTTTTGGTCAATTTTGAC+CGG | - | chr3_1:16309224-16309243 | None:intergenic | 35.0% |
| ! | CATTGCACATTTCATCCTTT+TGG | - | chr3_1:16310532-16310551 | None:intergenic | 35.0% |
| CAAAAGGATGAAATGTGCAA+TGG | + | chr3_1:16310530-16310549 | Msa0350880:intron | 35.0% | |
| AAAGGATGAAATGTGCAATG+GGG | + | chr3_1:16310532-16310551 | Msa0350880:intron | 35.0% | |
| TCAAACTAAATAGGTCCTTG+AGG | + | chr3_1:16310866-16310885 | Msa0350880:intron | 35.0% | |
| !!! | ACACTTTTTTGGATACCTCA+AGG | - | chr3_1:16310884-16310903 | None:intergenic | 35.0% |
| ! | GGTATCCAAAAAAGTGTATG+TGG | + | chr3_1:16310887-16310906 | Msa0350880:intron | 35.0% |
| TAAGCCTCAACCTAAAGTAA+AGG | + | chr3_1:16311138-16311157 | Msa0350880:intron | 35.0% | |
| !! | ATTGCCTTTACTTTAGGTTG+AGG | - | chr3_1:16311145-16311164 | None:intergenic | 35.0% |
| GTGCTTGCAATGTAAACTTT+AGG | - | chr3_1:16311192-16311211 | None:intergenic | 35.0% | |
| ATTCAACGTTTCTCTTAACG+AGG | - | chr3_1:16311515-16311534 | None:intergenic | 35.0% | |
| !! | GTGAGACTTTCAAGTTTGAA+CGG | + | chr3_1:16311680-16311699 | Msa0350880:three_prime_UTR | 35.0% |
| TTAAACATGGAACCATGTGA+TGG | + | chr3_1:16311935-16311954 | Msa0350880:three_prime_UTR | 35.0% | |
| ! | TGGAGGATTTTTCACCTCAA+TGG | + | chr3_1:16308758-16308777 | Msa0350880:CDS | 40.0% |
| ! | AGGATTTTTCACCTCAATGG+TGG | + | chr3_1:16308761-16308780 | Msa0350880:CDS | 40.0% |
| ! | GGATTTTTCACCTCAATGGT+GGG | + | chr3_1:16308762-16308781 | Msa0350880:CDS | 40.0% |
| AGCTTGTGAAATCTTCGACA+TGG | + | chr3_1:16308785-16308804 | Msa0350880:CDS | 40.0% | |
| CAAAATCTTCCTCCTTATGC+TGG | - | chr3_1:16308831-16308850 | None:intergenic | 40.0% | |
| ! | GAGGAAGATTTTGTCGAAAG+TGG | + | chr3_1:16308838-16308857 | Msa0350880:CDS | 40.0% |
| ! | GAAGATTTTGTCGAAAGTGG+CGG | + | chr3_1:16308841-16308860 | Msa0350880:CDS | 40.0% |
| TCAACAGGATCATCCATAAC+TGG | - | chr3_1:16309000-16309019 | None:intergenic | 40.0% | |
| AGTTATGGATGATCCTGTTG+AGG | + | chr3_1:16308999-16309018 | Msa0350880:CDS | 40.0% | |
| !!! | ACAGGCTTTTTTTCCTCAAC+AGG | - | chr3_1:16309015-16309034 | None:intergenic | 40.0% |
| GAGGAAAAAAAGCCTGTTCA+TGG | + | chr3_1:16309018-16309037 | Msa0350880:intron | 40.0% | |
| ! | TTGTGGTTTTCATACATGGG+GGG | - | chr3_1:16309166-16309185 | None:intergenic | 40.0% |
| TGCAAAGGGGCTAAAACATA+GGG | - | chr3_1:16309197-16309216 | None:intergenic | 40.0% | |
| ! | TTTTAGCCCCTTTGCACATT+TGG | + | chr3_1:16309201-16309220 | Msa0350880:intron | 40.0% |
| AAAGGACCAAATGTGCAAAG+GGG | - | chr3_1:16309210-16309229 | None:intergenic | 40.0% | |
| CAAAAGGACCAAATGTGCAA+AGG | - | chr3_1:16309212-16309231 | None:intergenic | 40.0% | |
| ! | CTTTGCACATTTGGTCCTTT+TGG | + | chr3_1:16309210-16309229 | Msa0350880:intron | 40.0% |
| GTTGAATGATCTGAGAGTAG+GGG | - | chr3_1:16309495-16309514 | None:intergenic | 40.0% | |
| GAGTTGAATGATCTGAGAGT+AGG | - | chr3_1:16309497-16309516 | None:intergenic | 40.0% | |
| AGGACCAAATTCACTTAACC+GGG | - | chr3_1:16309576-16309595 | None:intergenic | 40.0% | |
| GAGGACCAAATTCACTTAAC+CGG | - | chr3_1:16309577-16309596 | None:intergenic | 40.0% | |
| TTGTAAGTGCATGGATTTGG+AGG | - | chr3_1:16309596-16309615 | None:intergenic | 40.0% | |
| ATGAGGATGTTGTAAGTGCA+TGG | - | chr3_1:16309605-16309624 | None:intergenic | 40.0% | |
| CATTTCATCGAACAGTTGCA+AGG | - | chr3_1:16309677-16309696 | None:intergenic | 40.0% | |
| CAAATGTGACTCTATCAGGA+CGG | - | chr3_1:16309714-16309733 | None:intergenic | 40.0% | |
| GTCCTGATAGAGTCACATTT+GGG | + | chr3_1:16309713-16309732 | Msa0350880:CDS | 40.0% | |
| ! | ACATTTGGGACGTTAATCCA+TGG | + | chr3_1:16309727-16309746 | Msa0350880:intron | 40.0% |
| ! | GTAGAGTATCCATTGTCGTT+GGG | - | chr3_1:16309774-16309793 | None:intergenic | 40.0% |
| ! | AGTAGAGTATCCATTGTCGT+TGG | - | chr3_1:16309775-16309794 | None:intergenic | 40.0% |
| GTTAGCAAGGTTGAAGCAAA+TGG | + | chr3_1:16309828-16309847 | Msa0350880:CDS | 40.0% | |
| AAGGTTGAAGCAAATGGCAA+TGG | + | chr3_1:16309834-16309853 | Msa0350880:CDS | 40.0% | |
| TGTTGCATGAACGTTGTTTG+TGG | + | chr3_1:16310029-16310048 | Msa0350880:CDS | 40.0% | |
| GAAGAAAGAAAGAGAAGGTG+AGG | + | chr3_1:16310094-16310113 | Msa0350880:intron | 40.0% | |
| GAGGAATCGAGGAAATTGAA+AGG | + | chr3_1:16310113-16310132 | Msa0350880:intron | 40.0% | |
| GGAATCGAGGAAATTGAAAG+GGG | + | chr3_1:16310115-16310134 | Msa0350880:intron | 40.0% | |
| GAATCGAGGAAATTGAAAGG+GGG | + | chr3_1:16310116-16310135 | Msa0350880:intron | 40.0% | |
| AATTGAAAGGGGGAATGAAG+AGG | + | chr3_1:16310126-16310145 | Msa0350880:intron | 40.0% | |
| ATTGAAAGGGGGAATGAAGA+GGG | + | chr3_1:16310127-16310146 | Msa0350880:intron | 40.0% | |
| TGTGTTGAATGAATGTGGGT+TGG | + | chr3_1:16310306-16310325 | Msa0350880:CDS | 40.0% | |
| ACCGGTCAAAATTGACCAAA+AGG | + | chr3_1:16310514-16310533 | Msa0350880:intron | 40.0% | |
| TGCAATGGGGCTAAAAGTTA+GGG | + | chr3_1:16310545-16310564 | Msa0350880:intron | 40.0% | |
| TACAAAGGGTGATCTGTGAT+TGG | + | chr3_1:16311042-16311061 | Msa0350880:intron | 40.0% | |
| TCTAATGTGTCAAACCTCCA+AGG | + | chr3_1:16311226-16311245 | Msa0350880:intron | 40.0% | |
| GGAATCGAACGCAAAATTCT+AGG | - | chr3_1:16311298-16311317 | None:intergenic | 40.0% | |
| TCTCAAGATCTTGTCACCAA+AGG | + | chr3_1:16311394-16311413 | Msa0350880:CDS | 40.0% | |
| AGATCTTGTCACCAAAGGAA+AGG | + | chr3_1:16311399-16311418 | Msa0350880:CDS | 40.0% | |
| GATCTTGTCACCAAAGGAAA+GGG | + | chr3_1:16311400-16311419 | Msa0350880:CDS | 40.0% | |
| ATCTTGTCACCAAAGGAAAG+GGG | + | chr3_1:16311401-16311420 | Msa0350880:CDS | 40.0% | |
| TTGAGGTTAACATGTTGTGC+TGG | - | chr3_1:16311467-16311486 | None:intergenic | 40.0% | |
| AACGTTTCTCTTAACGAGGT+TGG | - | chr3_1:16311511-16311530 | None:intergenic | 40.0% | |
| TGTGTATAGAGAAGAAGGTG+TGG | + | chr3_1:16311605-16311624 | Msa0350880:three_prime_UTR | 40.0% | |
| AGTTTGAACGGCTCAAATCT+TGG | + | chr3_1:16311692-16311711 | Msa0350880:three_prime_UTR | 40.0% | |
| ATCCAATTACCACACTGAAC+AGG | - | chr3_1:16311826-16311845 | None:intergenic | 40.0% | |
| ! | GGTATGAAGAGAGGTGCATT+TGG | - | chr3_1:16308721-16308740 | None:intergenic | 45.0% |
| AATGCAGCAGGTATGAAGAG+AGG | - | chr3_1:16308730-16308749 | None:intergenic | 45.0% | |
| ! | CTATTGGTTGAGCCAGCATA+AGG | + | chr3_1:16308816-16308835 | Msa0350880:CDS | 45.0% |
| !! | AGCTCAAGAGTGTCCAGTTA+TGG | + | chr3_1:16308984-16309003 | Msa0350880:CDS | 45.0% |
| AACATAGGGGGGCAAAATTG+TGG | - | chr3_1:16309183-16309202 | None:intergenic | 45.0% | |
| AAAGGGGCTAAAACATAGGG+GGG | - | chr3_1:16309194-16309213 | None:intergenic | 45.0% | |
| CAAAGGGGCTAAAACATAGG+GGG | - | chr3_1:16309195-16309214 | None:intergenic | 45.0% | |
| GCAAAGGGGCTAAAACATAG+GGG | - | chr3_1:16309196-16309215 | None:intergenic | 45.0% | |
| GTGCAAAGGGGCTAAAACAT+AGG | - | chr3_1:16309198-16309217 | None:intergenic | 45.0% | |
| TGACCAAGTCAACGCATATG+TGG | + | chr3_1:16309240-16309259 | Msa0350880:intron | 45.0% | |
| AAGGTTTGAATGGCACGTGA+AGG | - | chr3_1:16309446-16309465 | None:intergenic | 45.0% | |
| GATGGAGAGGAAGGTTTGAA+TGG | - | chr3_1:16309456-16309475 | None:intergenic | 45.0% | |
| ! | GAGTGATGGTTTGAAATCGG+CGG | - | chr3_1:16309544-16309563 | None:intergenic | 45.0% |
| GCTTCCCGGTTAAGTGAATT+TGG | + | chr3_1:16309569-16309588 | Msa0350880:CDS | 45.0% | |
| CATGAACGGATGAGGATGAA+CGG | - | chr3_1:16309628-16309647 | None:intergenic | 45.0% | |
| ATCCGTTCATGCTTCCTTCA+AGG | + | chr3_1:16309637-16309656 | Msa0350880:CDS | 45.0% | |
| CGTCCTGATAGAGTCACATT+TGG | + | chr3_1:16309712-16309731 | Msa0350880:CDS | 45.0% | |
| GTCCCAAATGTGACTCTATC+AGG | - | chr3_1:16309718-16309737 | None:intergenic | 45.0% | |
| GCGAATCCTTACACAAACCA+TGG | - | chr3_1:16309747-16309766 | None:intergenic | 45.0% | |
| ! | GTGGAACCTCTATGTCGATT+CGG | + | chr3_1:16310048-16310067 | Msa0350880:CDS | 45.0% |
| AAAGAGAAGGTGAGGAATCG+AGG | + | chr3_1:16310102-16310121 | Msa0350880:intron | 45.0% | |
| TGAAGAGGGTGAAGGAGAAT+AGG | + | chr3_1:16310141-16310160 | Msa0350880:intron | 45.0% | |
| AGGGTGAAGGAGAATAGGAT+TGG | + | chr3_1:16310146-16310165 | Msa0350880:intron | 45.0% | |
| GGGTGAAGGAGAATAGGATT+GGG | + | chr3_1:16310147-16310166 | Msa0350880:intron | 45.0% | |
| GTGCAATGGGGCTAAAAGTT+AGG | + | chr3_1:16310544-16310563 | Msa0350880:intron | 45.0% | |
| GCAATGGGGCTAAAAGTTAG+GGG | + | chr3_1:16310546-16310565 | Msa0350880:intron | 45.0% | |
| CAATGGGGCTAAAAGTTAGG+GGG | + | chr3_1:16310547-16310566 | Msa0350880:intron | 45.0% | |
| CTACTACTTGAGCTACACCT+TGG | - | chr3_1:16311246-16311265 | None:intergenic | 45.0% | |
| GTAGTAGTGTGCACTGTGTA+CGG | + | chr3_1:16311259-16311278 | Msa0350880:intron | 45.0% | |
| TAGTAGTGTGCACTGTGTAC+GGG | + | chr3_1:16311260-16311279 | Msa0350880:intron | 45.0% | |
| !! | TTCTTTGAGGTGCACACTTG+AGG | - | chr3_1:16311484-16311503 | None:intergenic | 45.0% |
| !! | CGAGGTTGGTGAATTCTTTG+AGG | - | chr3_1:16311497-16311516 | None:intergenic | 45.0% |
| GTCCTGTTCAGTGTGGTAAT+TGG | + | chr3_1:16311821-16311840 | Msa0350880:three_prime_UTR | 45.0% | |
| !!! | TAATTTAAAAATAGATTTTT+TGG | + | chr3_1:16310435-16310454 | Msa0350880:intron | 5.0% |
| !! | ATATATTATCATAAAATATT+AGG | - | chr3_1:16310650-16310669 | None:intergenic | 5.0% |
| ACCTGCTGCATTTCGTCAAG+TGG | + | chr3_1:16308738-16308757 | Msa0350880:CDS | 50.0% | |
| TCCACTTGACGAAATGCAGC+AGG | - | chr3_1:16308742-16308761 | None:intergenic | 50.0% | |
| TGCTGCATTTCGTCAAGTGG+AGG | + | chr3_1:16308741-16308760 | Msa0350880:CDS | 50.0% | |
| TTCACAAGCTCCCACCATTG+AGG | - | chr3_1:16308775-16308794 | None:intergenic | 50.0% | |
| TTGGTTGAGCCAGCATAAGG+AGG | + | chr3_1:16308819-16308838 | Msa0350880:CDS | 50.0% | |
| TGGACACTCTTGAGCTTCGT+CGG | - | chr3_1:16308980-16308999 | None:intergenic | 50.0% | |
| !! | CAGCCACATATGCGTTGACT+TGG | - | chr3_1:16309246-16309265 | None:intergenic | 50.0% |
| GCACGTGAAGGAAGAAGATG+AGG | - | chr3_1:16309434-16309453 | None:intergenic | 50.0% | |
| AAAGGAAGGGATGGAGAGGA+AGG | - | chr3_1:16309465-16309484 | None:intergenic | 50.0% | |
| !! | AGTGAGGAGAGCATTGAGGA+GGG | - | chr3_1:16309519-16309538 | None:intergenic | 50.0% |
| !! | AAGTGAGGAGAGCATTGAGG+AGG | - | chr3_1:16309520-16309539 | None:intergenic | 50.0% |
| ! | TTTGAAATCGGCGGCAAGTG+AGG | - | chr3_1:16309535-16309554 | None:intergenic | 50.0% |
| ! | GAAGGAAGCATGAACGGATG+AGG | - | chr3_1:16309636-16309655 | None:intergenic | 50.0% |
| ! | GGCCTTGAAGGAAGCATGAA+CGG | - | chr3_1:16309642-16309661 | None:intergenic | 50.0% |
| TACTACATCTGCTGCTGCTG+CGG | + | chr3_1:16309791-16309810 | Msa0350880:CDS | 50.0% | |
| !! | GAACCTCTATGTCGATTCGG+TGG | + | chr3_1:16310051-16310070 | Msa0350880:CDS | 50.0% |
| TTGACCGGTCAATGCTTACG+TGG | - | chr3_1:16310503-16310522 | None:intergenic | 50.0% | |
| CTACTTGAGCTACACCTTGG+AGG | - | chr3_1:16311243-16311262 | None:intergenic | 50.0% | |
| AGTAGTGTGCACTGTGTACG+GGG | + | chr3_1:16311261-16311280 | Msa0350880:intron | 50.0% | |
| GACTTGACACCCCTTTCCTT+TGG | - | chr3_1:16311413-16311432 | None:intergenic | 50.0% | |
| !! | AGTGCTTTGGAGACCCGATA+GGG | - | chr3_1:16311436-16311455 | None:intergenic | 50.0% |
| !! | AAGTGCTTTGGAGACCCGAT+AGG | - | chr3_1:16311437-16311456 | None:intergenic | 50.0% |
| ! | GCTGGCTTCTCAAAGTGCTT+TGG | - | chr3_1:16311449-16311468 | None:intergenic | 50.0% |
| TAGGTGTGTCCTGTTCAGTG+TGG | + | chr3_1:16311814-16311833 | Msa0350880:three_prime_UTR | 50.0% | |
| AGCGAAAGGAAGGGATGGAG+AGG | - | chr3_1:16309469-16309488 | None:intergenic | 55.0% | |
| ! | TAGGGGTGCAGCGAAAGGAA+GGG | - | chr3_1:16309478-16309497 | None:intergenic | 55.0% |
| !! | GGCAAGTGAGGAGAGCATTG+AGG | - | chr3_1:16309523-16309542 | None:intergenic | 55.0% |
| CCATCACTCACTTCGCTTCC+CGG | + | chr3_1:16309555-16309574 | Msa0350880:CDS | 55.0% | |
| CGGATGAGGATGAACGGATG+AGG | - | chr3_1:16309622-16309641 | None:intergenic | 55.0% | |
| GTTGCAAGGCGCGATCAGTT+CGG | - | chr3_1:16309663-16309682 | None:intergenic | 55.0% | |
| GACTCTATCAGGACGGACGT+TGG | - | chr3_1:16309707-16309726 | None:intergenic | 55.0% | |
| TTCGCGAAGCCCAACGACAA+TGG | + | chr3_1:16309762-16309781 | Msa0350880:CDS | 55.0% | |
| ACGCCACCGAATCGACATAG+AGG | - | chr3_1:16310057-16310076 | None:intergenic | 55.0% | |
| AGGGGGAATGAAGAGGGTGA+AGG | + | chr3_1:16310133-16310152 | Msa0350880:intron | 55.0% | |
| TGCTGTGTTGTGTGTGTCGC+TGG | + | chr3_1:16310353-16310372 | Msa0350880:intron | 55.0% | |
| !! | CACGCCACGTAAGCATTGAC+CGG | + | chr3_1:16310496-16310515 | Msa0350880:intron | 55.0% |
| GTAGTGTGCACTGTGTACGG+GGG | + | chr3_1:16311262-16311281 | Msa0350880:intron | 55.0% | |
| !! | AGGGGTGTCAAGTCCCCTAT+CGG | + | chr3_1:16311419-16311438 | Msa0350880:CDS | 55.0% |
| !! | GTGCTTTGGAGACCCGATAG+GGG | - | chr3_1:16311435-16311454 | None:intergenic | 55.0% |
| GGTGCAGCGAAAGGAAGGGA+TGG | - | chr3_1:16309474-16309493 | None:intergenic | 60.0% | |
| ! | GTAGGGGTGCAGCGAAAGGA+AGG | - | chr3_1:16309479-16309498 | None:intergenic | 60.0% |
| ! | GAGAGTAGGGGTGCAGCGAA+AGG | - | chr3_1:16309483-16309502 | None:intergenic | 60.0% |
| CCGGGAAGCGAAGTGAGTGA+TGG | - | chr3_1:16309558-16309577 | None:intergenic | 60.0% | |
| CGCGATCAGTTCGGCCTTGA+AGG | - | chr3_1:16309654-16309673 | None:intergenic | 60.0% | |
| TACATCTGCTGCTGCTGCGG+AGG | + | chr3_1:16309794-16309813 | Msa0350880:CDS | 60.0% | |
| GGCTGCGGTTGCAGTTAGCA+AGG | + | chr3_1:16309815-16309834 | Msa0350880:CDS | 60.0% | |
| ! | GGGGTGTCAAGTCCCCTATC+GGG | + | chr3_1:16311420-16311439 | Msa0350880:CDS | 60.0% |
| TGCTGCTGCTGCGGAGGCTG+CGG | + | chr3_1:16309800-16309819 | Msa0350880:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 16308682 | 16311980 | 16308682 | ID=Msa0350880;Name=Msa0350880 |
| chr3_1 | mRNA | 16308682 | 16311980 | 16308682 | ID=Msa0350880-mRNA-1;Parent=Msa0350880;Name=Msa0350880-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|0|0.16|0.33|1|1|6|460|398 |
| chr3_1 | exon | 16308682 | 16309032 | 16308682 | ID=Msa0350880-mRNA-1:exon:3975;Parent=Msa0350880-mRNA-1 |
| chr3_1 | exon | 16309419 | 16309737 | 16309419 | ID=Msa0350880-mRNA-1:exon:3976;Parent=Msa0350880-mRNA-1 |
| chr3_1 | exon | 16309760 | 16309884 | 16309760 | ID=Msa0350880-mRNA-1:exon:3977;Parent=Msa0350880-mRNA-1 |
| chr3_1 | exon | 16309996 | 16310110 | 16309996 | ID=Msa0350880-mRNA-1:exon:3978;Parent=Msa0350880-mRNA-1 |
| chr3_1 | exon | 16310212 | 16310346 | 16310212 | ID=Msa0350880-mRNA-1:exon:3979;Parent=Msa0350880-mRNA-1 |
| chr3_1 | exon | 16311369 | 16311980 | 16311369 | ID=Msa0350880-mRNA-1:exon:3980;Parent=Msa0350880-mRNA-1 |
| chr3_1 | CDS | 16308682 | 16309032 | 16308682 | ID=Msa0350880-mRNA-1:cds;Parent=Msa0350880-mRNA-1 |
| chr3_1 | CDS | 16309419 | 16309737 | 16309419 | ID=Msa0350880-mRNA-1:cds;Parent=Msa0350880-mRNA-1 |
| chr3_1 | CDS | 16309760 | 16309884 | 16309760 | ID=Msa0350880-mRNA-1:cds;Parent=Msa0350880-mRNA-1 |
| chr3_1 | CDS | 16309996 | 16310110 | 16309996 | ID=Msa0350880-mRNA-1:cds;Parent=Msa0350880-mRNA-1 |
| chr3_1 | CDS | 16310212 | 16310346 | 16310212 | ID=Msa0350880-mRNA-1:cds;Parent=Msa0350880-mRNA-1 |
| chr3_1 | CDS | 16311369 | 16311520 | 16311369 | ID=Msa0350880-mRNA-1:cds;Parent=Msa0350880-mRNA-1 |
| chr3_1 | three_prime_UTR | 16311521 | 16311980 | 16311521 | ID=Msa0350880-mRNA-1:three_prime_utr;Parent=Msa0350880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
