AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1037420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1037420 MtrunA17_Chr7g0263011 92.032 251 16 1 80 326 1 251 3.62e-137 389
Msa1037420 MtrunA17_Chr1g0182381 44.314 255 121 6 80 325 1 243 1.45e-42 147
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1037420 AT2G37480.2 40.336 119 48 4 156 269 71 171 7.48e-13 66.6
Msa1037420 AT3G53670.1 36.800 125 71 3 144 268 61 177 1.21e-12 66.2
Msa1037420 AT3G53670.2 36.800 125 71 3 144 268 61 177 1.21e-12 66.2
Msa1037420 AT2G37480.1 40.336 119 49 3 156 269 71 172 2.04e-12 65.5

Find 74 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGTTGACATGCGAATTTC+TGG 0.211394 7_1:-74055690 Msa1037420:three_prime_UTR
TTTATTTATGCACATGAAAT+AGG 0.221808 7_1:+74055940 None:intergenic
TATGTATTATAAAGGAAATT+TGG 0.264568 7_1:-74055724 Msa1037420:three_prime_UTR
TCATGGCTTATGTATTATAA+AGG 0.273130 7_1:-74055732 Msa1037420:three_prime_UTR
CAAGCACAATTAAACGTGTT+TGG 0.314266 7_1:+74055564 None:intergenic
AGTTGATCGTTTGAAGAATC+AGG 0.314352 7_1:-74057951 Msa1037420:CDS
ATAAGGTGTATCAGACTATT+AGG 0.321011 7_1:+74057074 None:intergenic
CTGGTGGTTGGGGTGGTCTC+TGG 0.322506 7_1:-74055671 Msa1037420:three_prime_UTR
TGCTTCCGCAGTTTGAATCT+TGG 0.342574 7_1:+74056042 None:intergenic
CATGCGAATTTCTGGTGGTT+GGG 0.352137 7_1:-74055682 Msa1037420:three_prime_UTR
GGCAACGTCGCATGAGGAAT+TGG 0.368193 7_1:+74056834 None:intergenic
GTAAAATATCTTGAATGCTT+TGG 0.371014 7_1:-74055963 Msa1037420:three_prime_UTR
AAGCACAATTAAACGTGTTT+GGG 0.386299 7_1:+74055565 None:intergenic
TAATAGTCTGATACACCTTA+TGG 0.394018 7_1:-74057072 Msa1037420:CDS
ATAGGAAATTGACGGTGAAA+TGG 0.412052 7_1:-74056322 Msa1037420:CDS
GTGGTCTCTGGTGGCTCTCG+AGG 0.414895 7_1:-74055659 Msa1037420:three_prime_UTR
TCTGGTGGCTCTCGAGGGTA+TGG 0.415617 7_1:-74055653 Msa1037420:three_prime_UTR
TTTATCACGGCTACCTTTCA+AGG 0.425025 7_1:+74056358 None:intergenic
GGAACAAGAAGAAGTTGAAT+AGG 0.426368 7_1:+74058171 None:intergenic
ACAAGAAACAGCCGAAATCC+AGG 0.447680 7_1:-74056247 Msa1037420:CDS
TAGGAAATTGACGGTGAAAT+GGG 0.449608 7_1:-74056321 Msa1037420:CDS
TGGGATTCTCAAGTTATTGA+AGG 0.461070 7_1:-74056098 Msa1037420:CDS
ATGCGAATTTCTGGTGGTTG+GGG 0.466750 7_1:-74055681 Msa1037420:three_prime_UTR
ACATGCGAATTTCTGGTGGT+TGG 0.474480 7_1:-74055683 Msa1037420:three_prime_UTR
GTGGTTGGGGTGGTCTCTGG+TGG 0.476531 7_1:-74055668 Msa1037420:three_prime_UTR
TGGTCTCTGGTGGCTCTCGA+GGG 0.483059 7_1:-74055658 Msa1037420:three_prime_UTR
AGAGCATTTCATAATGCCTT+CGG 0.484925 7_1:-74058196 None:intergenic
TCCTCGTCAGACGAGCTTGA+AGG 0.485645 7_1:+74056813 None:intergenic
GTATATATAGTGAAAAGCTT+GGG 0.495142 7_1:-74055896 Msa1037420:three_prime_UTR
AAGCAGTCTCGCAACGTTGG+TGG 0.501681 7_1:-74056146 Msa1037420:CDS
GTGAAAAGCTTGGGATTGTA+TGG 0.514719 7_1:-74055887 Msa1037420:three_prime_UTR
TGTATATATAGTGAAAAGCT+TGG 0.519873 7_1:-74055897 Msa1037420:three_prime_UTR
CAGCTTCAAACTGCCTCTGA+AGG 0.523218 7_1:+74055848 None:intergenic
AAGGCAGATTTGAGCTCCGA+AGG 0.526871 7_1:+74056377 None:intergenic
CAGAAGAGCACACTTCCATA+AGG 0.527688 7_1:+74057057 None:intergenic
AGCAGTCTCGCAACGTTGGT+GGG 0.540201 7_1:-74056145 Msa1037420:CDS
TGCGACACTAGTGTAGGTAT+AGG 0.544332 7_1:+74056281 None:intergenic
TTCACCGTCAATTTCCTATG+TGG 0.544822 7_1:+74056326 None:intergenic
GTTGATCGTTTGAAGAATCA+GGG 0.550746 7_1:-74057950 Msa1037420:CDS
CGAATTTCTGGTGGTTGGGG+TGG 0.553251 7_1:-74055678 Msa1037420:three_prime_UTR
AAATGTAAAGAAAGGTAACA+AGG 0.560400 7_1:-74056204 Msa1037420:CDS
AATGTAAAGAAAGGTAACAA+GGG 0.568123 7_1:-74056203 Msa1037420:CDS
GAGCTCAAATCTGCCTTGAA+AGG 0.568787 7_1:-74056371 Msa1037420:CDS
GAAATCTGAACATTTGTCTG+AGG 0.568873 7_1:-74056958 Msa1037420:CDS
AAATCTGAACATTTGTCTGA+GGG 0.573710 7_1:-74056957 Msa1037420:CDS
GCCTTCAAGCTCGTCTGACG+AGG 0.576208 7_1:-74056814 Msa1037420:CDS
TGAACCACATAGGAAATTGA+CGG 0.581672 7_1:-74056330 Msa1037420:CDS
CTGATCTGTGCAGTAAGTCG+TGG 0.587620 7_1:-74056118 Msa1037420:CDS
TGCGATGTGCAATGTAGCCA+AGG 0.589787 7_1:-74056931 Msa1037420:CDS
ATCTGAACATTTGTCTGAGG+GGG 0.595296 7_1:-74056955 Msa1037420:CDS
CTTGAAGGCAACGTCGCATG+AGG 0.601933 7_1:+74056828 None:intergenic
AGAAGTTGAATAGGTACCGA+AGG 0.603820 7_1:+74058180 None:intergenic
AGAAGTGCATTACTCAGTTG+CGG 0.604827 7_1:-74055997 Msa1037420:CDS
GGTGGCTCTCGAGGGTATGG+TGG 0.605496 7_1:-74055650 Msa1037420:three_prime_UTR
TGATCTGTGCAGTAAGTCGT+GGG 0.608135 7_1:-74056117 Msa1037420:CDS
AGCTTCAAACTGCCTCTGAA+GGG 0.608595 7_1:+74055849 None:intergenic
AAGAAGCAGTCTCGCAACGT+TGG 0.609694 7_1:-74056149 Msa1037420:CDS
TAGCCAAGGAAAACTCAAGT+GGG 0.611731 7_1:-74056917 Msa1037420:CDS
ATCAAGAGAGTCAAATTCAG+AGG 0.614512 7_1:+74056073 None:intergenic
ATGTAAAGAAAGGTAACAAG+GGG 0.626414 7_1:-74056202 Msa1037420:CDS
TAGATATGAGGACATCTAAG+AGG 0.632162 7_1:-74055612 Msa1037420:three_prime_UTR
TGATGAGCAGAATGCTCATG+AGG 0.641178 7_1:+74056765 None:intergenic
GTTGACATGCGAATTTCTGG+TGG 0.641682 7_1:-74055687 Msa1037420:three_prime_UTR
AAGGGGAATTCAACCCGAGG+GGG 0.642568 7_1:-74056185 Msa1037420:CDS
GAAAGAATCAAAACCCAACA+TGG 0.643797 7_1:-74056883 Msa1037420:CDS
CGTCGCATGAGGAATTGGAA+AGG 0.653621 7_1:+74056839 None:intergenic
GTTTGGGCGAATGTAGTGCT+AGG 0.662775 7_1:+74055581 None:intergenic
TGTAGCCAAGATTCAAACTG+CGG 0.664125 7_1:-74056047 Msa1037420:CDS
GTAGCCAAGGAAAACTCAAG+TGG 0.667603 7_1:-74056918 Msa1037420:CDS
AATCTGAACATTTGTCTGAG+GGG 0.684222 7_1:-74056956 Msa1037420:CDS
AACAAGGGGAATTCAACCCG+AGG 0.692269 7_1:-74056188 Msa1037420:CDS
ACAAGGGGAATTCAACCCGA+GGG 0.697575 7_1:-74056187 Msa1037420:CDS
AGCCAAGGAAAACTCAAGTG+GGG 0.705918 7_1:-74056916 Msa1037420:intron
CAAGGGGAATTCAACCCGAG+GGG 0.745728 7_1:-74056186 Msa1037420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATGAAAATTGTTGAAAAA+AGG + chr7_1:74055489-74055508 None:intergenic 15.0%
!!! TTTTTCAACAATTTTCATAA+TGG - chr7_1:74055489-74055508 Msa1037420:three_prime_UTR 15.0%
!!! CATATTTTATTTATCCAATT+AGG - chr7_1:74056395-74056414 Msa1037420:intron 15.0%
!! AGGCTAAATTAAAAAAAAAA+CGG + chr7_1:74057188-74057207 None:intergenic 15.0%
!! TATGTATTATAAAGGAAATT+TGG - chr7_1:74057912-74057931 Msa1037420:intron 15.0%
!! ATCATTACAAATAAAAACTT+CGG + chr7_1:74058112-74058131 None:intergenic 15.0%
!! ATCATTACAAATAAAAACTT+CGG + chr7_1:74058112-74058131 None:intergenic 15.0%
!! TCTAATGTAAAGTATATCTT+AGG - chr7_1:74056014-74056033 Msa1037420:CDS 20.0%
!!! TAATATTGACTTCTTGATTA+GGG + chr7_1:74056474-74056493 None:intergenic 20.0%
!!! ATTACAGTTTATTTTTCTGT+TGG - chr7_1:74056502-74056521 Msa1037420:intron 20.0%
!! ATTGAATAGGTAAATTCAAT+AGG + chr7_1:74057081-74057100 None:intergenic 20.0%
!! AGTTTAACACTATATTGAAT+AGG + chr7_1:74057094-74057113 None:intergenic 20.0%
!! TCAATATAGTGTTAAACTAA+TGG - chr7_1:74057096-74057115 Msa1037420:intron 20.0%
!! GATGTAAAATACATAGAAAA+AGG + chr7_1:74057232-74057251 None:intergenic 20.0%
!! GAAAAGAAAAATGTAAAGAA+AGG - chr7_1:74057424-74057443 Msa1037420:intron 20.0%
!! TTTATTTATGCACATGAAAT+AGG + chr7_1:74057699-74057718 None:intergenic 20.0%
! TGAAACCAAAACAGAAAAAA+GGG + chr7_1:74055602-74055621 None:intergenic 25.0%
! ATGAAACCAAAACAGAAAAA+AGG + chr7_1:74055603-74055622 None:intergenic 25.0%
! TGATCATGAAAAAATGATGT+TGG - chr7_1:74055839-74055858 Msa1037420:three_prime_UTR 25.0%
! ATTTATTGCTATGTATGTGT+CGG - chr7_1:74055863-74055882 Msa1037420:three_prime_UTR 25.0%
! AATATTTGTTTGAGCTAGTT+AGG - chr7_1:74055939-74055958 Msa1037420:three_prime_UTR 25.0%
!!! GTGCAACAATTTATTTTATC+TGG - chr7_1:74056069-74056088 Msa1037420:CDS 25.0%
! AATTTAAACAAGTCCAAAAG+AGG + chr7_1:74056152-74056171 None:intergenic 25.0%
!! TATTAGAATAGCGAACATTT+TGG + chr7_1:74056422-74056441 None:intergenic 25.0%
!!! CTAATATTGACTTCTTGATT+AGG + chr7_1:74056475-74056494 None:intergenic 25.0%
! TTGTAACATGAAAAACTTAC+AGG + chr7_1:74056922-74056941 None:intergenic 25.0%
!! AGTTTTTCATGTTACAAAGT+CGG - chr7_1:74056925-74056944 Msa1037420:CDS 25.0%
! TTAATGATGCTTATGTGTAT+TGG - chr7_1:74056950-74056969 Msa1037420:CDS 25.0%
!!! AATTTCTGTTTTGAAAAAGC+TGG - chr7_1:74056994-74057013 Msa1037420:CDS 25.0%
!! TTCTATGTATTTTACATCAC+AGG - chr7_1:74057234-74057253 Msa1037420:intron 25.0%
! AAATGTAAAGAAAGGTAACA+AGG - chr7_1:74057432-74057451 Msa1037420:intron 25.0%
! AATGTAAAGAAAGGTAACAA+GGG - chr7_1:74057433-74057452 Msa1037420:intron 25.0%
! GTAAAATATCTTGAATGCTT+TGG - chr7_1:74057673-74057692 Msa1037420:intron 25.0%
! TGTATATATAGTGAAAAGCT+TGG - chr7_1:74057739-74057758 Msa1037420:intron 25.0%
! GTATATATAGTGAAAAGCTT+GGG - chr7_1:74057740-74057759 Msa1037420:intron 25.0%
!!! ACACATTTTTGTTTGTAATG+TGG - chr7_1:74057840-74057859 Msa1037420:intron 25.0%
!!! TTGTTGTTTTTATGCTTTCA+TGG - chr7_1:74057887-74057906 Msa1037420:intron 25.0%
! TCATGGCTTATGTATTATAA+AGG - chr7_1:74057904-74057923 Msa1037420:intron 25.0%
! AAATAAAAACTTCGGATTTG+AGG + chr7_1:74058104-74058123 None:intergenic 25.0%
!!! GTTTTTATTTGTAATGATGC+TGG - chr7_1:74058114-74058133 Msa1037420:CDS 25.0%
!!! GTTTTTATTTGTAATGATGC+TGG - chr7_1:74058114-74058133 Msa1037420:CDS 25.0%
!! AGCTTTAAACTTCGTCTTTA+AGG - chr7_1:74055741-74055760 Msa1037420:three_prime_UTR 30.0%
AATGTGTATGAAAACCTACA+AGG + chr7_1:74055983-74056002 None:intergenic 30.0%
!! TGTTTTCATATAAGCTTGCT+TGG + chr7_1:74056289-74056308 None:intergenic 30.0%
TCTTGATTAGGGAAAAAAAC+CGG + chr7_1:74056463-74056482 None:intergenic 30.0%
ATAAGGTGTATCAGACTATT+AGG + chr7_1:74056565-74056584 None:intergenic 30.0%
TAATAGTCTGATACACCTTA+TGG - chr7_1:74056564-74056583 Msa1037420:intron 30.0%
AAATCTGAACATTTGTCTGA+GGG - chr7_1:74056679-74056698 Msa1037420:intron 30.0%
!! TTTTTCAAACACACCATGTT+GGG + chr7_1:74056769-74056788 None:intergenic 30.0%
!!! TTTTTTCAAACACACCATGT+TGG + chr7_1:74056770-74056789 None:intergenic 30.0%
CAACAAATCAATACCACATA+TGG + chr7_1:74057027-74057046 None:intergenic 30.0%
!! CATATGTGGTATTGATTTGT+TGG - chr7_1:74057025-74057044 Msa1037420:CDS 30.0%
!!! ACACCGTTCTTTTTGTTATT+CGG - chr7_1:74057127-74057146 Msa1037420:intron 30.0%
TGTCCGAATAACAAAAAGAA+CGG + chr7_1:74057133-74057152 None:intergenic 30.0%
! TTCTTCTTTTTCCTGGATTT+CGG + chr7_1:74057403-74057422 None:intergenic 30.0%
! CTTTTCATTCTTCTTTTTCC+TGG + chr7_1:74057410-74057429 None:intergenic 30.0%
ATGTAAAGAAAGGTAACAAG+GGG - chr7_1:74057434-74057453 Msa1037420:intron 30.0%
!! ATTTTCAGGAGTTAGATATG+AGG - chr7_1:74058012-74058031 Msa1037420:intron 30.0%
AAGCACAATTAAACGTGTTT+GGG + chr7_1:74058074-74058093 None:intergenic 30.0%
GGAACAAGAAGAAGTTGAAT+AGG + chr7_1:74055468-74055487 None:intergenic 35.0%
!!! CGTCTATCACTTTTTTCAAG+AGG + chr7_1:74055537-74055556 None:intergenic 35.0%
CTTGAAAAAAGTGATAGACG+TGG - chr7_1:74055537-74055556 Msa1037420:three_prime_UTR 35.0%
!!! GTTGTCCCTTTTTTCTGTTT+TGG - chr7_1:74055594-74055613 Msa1037420:three_prime_UTR 35.0%
CAGTAACAACAACAACTACT+AGG + chr7_1:74055634-74055653 None:intergenic 35.0%
AGTTGATCGTTTGAAGAATC+AGG - chr7_1:74055685-74055704 Msa1037420:three_prime_UTR 35.0%
GTTGATCGTTTGAAGAATCA+GGG - chr7_1:74055686-74055705 Msa1037420:three_prime_UTR 35.0%
TTGTTTGAGCTAGTTAGGTT+CGG - chr7_1:74055944-74055963 Msa1037420:three_prime_UTR 35.0%
AACTCTGCAATAATGTCTTC+CGG - chr7_1:74056441-74056460 Msa1037420:intron 35.0%
GAAATCTGAACATTTGTCTG+AGG - chr7_1:74056678-74056697 Msa1037420:intron 35.0%
AATCTGAACATTTGTCTGAG+GGG - chr7_1:74056680-74056699 Msa1037420:intron 35.0%
GAAAGAATCAAAACCCAACA+TGG - chr7_1:74056753-74056772 Msa1037420:CDS 35.0%
CAATAGGAATGCTTAACAGA+TGG + chr7_1:74057065-74057084 None:intergenic 35.0%
AGCTGTTGAAAAAAATGCAC+AGG + chr7_1:74057208-74057227 None:intergenic 35.0%
AAAGGTAGCCGTGATAAAAA+CGG - chr7_1:74057283-74057302 Msa1037420:intron 35.0%
ATAAAAACGGTGAACCACAT+AGG - chr7_1:74057296-74057315 Msa1037420:intron 35.0%
TGAACCACATAGGAAATTGA+CGG - chr7_1:74057306-74057325 Msa1037420:intron 35.0%
ATAGGAAATTGACGGTGAAA+TGG - chr7_1:74057314-74057333 Msa1037420:intron 35.0%
TAGGAAATTGACGGTGAAAT+GGG - chr7_1:74057315-74057334 Msa1037420:intron 35.0%
TGGGATTCTCAAGTTATTGA+AGG - chr7_1:74057538-74057557 Msa1037420:intron 35.0%
ATCAAGAGAGTCAAATTCAG+AGG + chr7_1:74057566-74057585 None:intergenic 35.0%
! GAAATTTTTGTACCCTTCAG+AGG - chr7_1:74057775-74057794 Msa1037420:intron 35.0%
TTTGTTGACATGCGAATTTC+TGG - chr7_1:74057946-74057965 Msa1037420:CDS 35.0%
TAGATATGAGGACATCTAAG+AGG - chr7_1:74058024-74058043 Msa1037420:intron 35.0%
CAAGCACAATTAAACGTGTT+TGG + chr7_1:74058075-74058094 None:intergenic 35.0%
!! AGAAGTTGAATAGGTACCGA+AGG + chr7_1:74055459-74055478 None:intergenic 40.0%
TGTTTGAGCTAGTTAGGTTC+GGG - chr7_1:74055945-74055964 Msa1037420:three_prime_UTR 40.0%
GGGTACTAATTCTACCTTGT+AGG - chr7_1:74055966-74055985 Msa1037420:three_prime_UTR 40.0%
CTGTCGTCAATAAAAACCAG+CGG - chr7_1:74056123-74056142 Msa1037420:CDS 40.0%
TGTCGTCAATAAAAACCAGC+GGG - chr7_1:74056124-74056143 Msa1037420:CDS 40.0%
ACGATTAGTGCTTGTGCTAA+AGG - chr7_1:74056362-74056381 Msa1037420:CDS 40.0%
! GCGAACATTTTGGACCTAAT+TGG + chr7_1:74056412-74056431 None:intergenic 40.0%
ATCTGAACATTTGTCTGAGG+GGG - chr7_1:74056681-74056700 Msa1037420:intron 40.0%
TAGCCAAGGAAAACTCAAGT+GGG - chr7_1:74056719-74056738 Msa1037420:intron 40.0%
! TTTTACATCACAGGCTCCTT+CGG - chr7_1:74057243-74057262 Msa1037420:intron 40.0%
TTTATCACGGCTACCTTTCA+AGG + chr7_1:74057281-74057300 None:intergenic 40.0%
!! GTGGTTCACCGTTTTTATCA+CGG + chr7_1:74057294-74057313 None:intergenic 40.0%
TTCACCGTCAATTTCCTATG+TGG + chr7_1:74057313-74057332 None:intergenic 40.0%
TGTAGCCAAGATTCAAACTG+CGG - chr7_1:74057589-74057608 Msa1037420:intron 40.0%
! AGAAGTGCATTACTCAGTTG+CGG - chr7_1:74057639-74057658 Msa1037420:intron 40.0%
GTGAAAAGCTTGGGATTGTA+TGG - chr7_1:74057749-74057768 Msa1037420:intron 40.0%
GTTTGAGCTAGTTAGGTTCG+GGG - chr7_1:74055946-74055965 Msa1037420:three_prime_UTR 45.0%
! CAGAAGAGCACACTTCCATA+AGG + chr7_1:74056582-74056601 None:intergenic 45.0%
GTAGCCAAGGAAAACTCAAG+TGG - chr7_1:74056718-74056737 Msa1037420:intron 45.0%
AGCCAAGGAAAACTCAAGTG+GGG - chr7_1:74056720-74056739 Msa1037420:intron 45.0%
! AACCCCACTTGAGTTTTCCT+TGG + chr7_1:74056725-74056744 None:intergenic 45.0%
TGATGAGCAGAATGCTCATG+AGG + chr7_1:74056874-74056893 None:intergenic 45.0%
AGCTGGCGTTATTCCATATG+TGG - chr7_1:74057011-74057030 Msa1037420:CDS 45.0%
GAGCTCAAATCTGCCTTGAA+AGG - chr7_1:74057265-74057284 Msa1037420:intron 45.0%
TGCGACACTAGTGTAGGTAT+AGG + chr7_1:74057358-74057377 None:intergenic 45.0%
ACAAGAAACAGCCGAAATCC+AGG - chr7_1:74057389-74057408 Msa1037420:intron 45.0%
TGATCTGTGCAGTAAGTCGT+GGG - chr7_1:74057519-74057538 Msa1037420:intron 45.0%
TGCTTCCGCAGTTTGAATCT+TGG + chr7_1:74057597-74057616 None:intergenic 45.0%
AGCTTCAAACTGCCTCTGAA+GGG + chr7_1:74057790-74057809 None:intergenic 45.0%
! GTTGACATGCGAATTTCTGG+TGG - chr7_1:74057949-74057968 Msa1037420:CDS 45.0%
!! ACATGCGAATTTCTGGTGGT+TGG - chr7_1:74057953-74057972 Msa1037420:CDS 45.0%
!! CATGCGAATTTCTGGTGGTT+GGG - chr7_1:74057954-74057973 Msa1037420:CDS 45.0%
!! ATGCGAATTTCTGGTGGTTG+GGG - chr7_1:74057955-74057974 Msa1037420:CDS 45.0%
! GGGTATGGTGGCTAATTTTC+AGG - chr7_1:74057998-74058017 Msa1037420:CDS 45.0%
!! AAACCAGCGGGTTCCTCTTT+TGG - chr7_1:74056136-74056155 Msa1037420:CDS 50.0%
TGCGATGTGCAATGTAGCCA+AGG - chr7_1:74056705-74056724 Msa1037420:intron 50.0%
CGTCGCATGAGGAATTGGAA+AGG + chr7_1:74056800-74056819 None:intergenic 50.0%
AAGGCAGATTTGAGCTCCGA+AGG + chr7_1:74057262-74057281 None:intergenic 50.0%
ACAGTGTGCGACACTAGTGT+AGG + chr7_1:74057364-74057383 None:intergenic 50.0%
AACAAGGGGAATTCAACCCG+AGG - chr7_1:74057448-74057467 Msa1037420:intron 50.0%
ACAAGGGGAATTCAACCCGA+GGG - chr7_1:74057449-74057468 Msa1037420:intron 50.0%
TATCTTTGCCATTGCCCCCT+CGG + chr7_1:74057468-74057487 None:intergenic 50.0%
AAGAAGCAGTCTCGCAACGT+TGG - chr7_1:74057487-74057506 Msa1037420:intron 50.0%
CTGATCTGTGCAGTAAGTCG+TGG - chr7_1:74057518-74057537 Msa1037420:intron 50.0%
CAGCTTCAAACTGCCTCTGA+AGG + chr7_1:74057791-74057810 None:intergenic 50.0%
GTTTGGGCGAATGTAGTGCT+AGG + chr7_1:74058058-74058077 None:intergenic 50.0%
AGTCCAAAAGAGGAACCCGC+TGG + chr7_1:74056142-74056161 None:intergenic 55.0%
GGCAACGTCGCATGAGGAAT+TGG + chr7_1:74056805-74056824 None:intergenic 55.0%
CTTGAAGGCAACGTCGCATG+AGG + chr7_1:74056811-74056830 None:intergenic 55.0%
TCCTCGTCAGACGAGCTTGA+AGG + chr7_1:74056826-74056845 None:intergenic 55.0%
CAAGGGGAATTCAACCCGAG+GGG - chr7_1:74057450-74057469 Msa1037420:intron 55.0%
AAGGGGAATTCAACCCGAGG+GGG - chr7_1:74057451-74057470 Msa1037420:intron 55.0%
AATTCAACCCGAGGGGGCAA+TGG - chr7_1:74057457-74057476 Msa1037420:intron 55.0%
ATCTTTGCCATTGCCCCCTC+GGG + chr7_1:74057467-74057486 None:intergenic 55.0%
AAGCAGTCTCGCAACGTTGG+TGG - chr7_1:74057490-74057509 Msa1037420:intron 55.0%
AGCAGTCTCGCAACGTTGGT+GGG - chr7_1:74057491-74057510 Msa1037420:intron 55.0%
!! CGAATTTCTGGTGGTTGGGG+TGG - chr7_1:74057958-74057977 Msa1037420:CDS 55.0%
GCCTTCAAGCTCGTCTGACG+AGG - chr7_1:74056822-74056841 Msa1037420:CDS 60.0%
TGGTCTCTGGTGGCTCTCGA+GGG - chr7_1:74057978-74057997 Msa1037420:CDS 60.0%
TCTGGTGGCTCTCGAGGGTA+TGG - chr7_1:74057983-74058002 Msa1037420:CDS 60.0%
CTGGTGGTTGGGGTGGTCTC+TGG - chr7_1:74057965-74057984 Msa1037420:CDS 65.0%
GTGGTTGGGGTGGTCTCTGG+TGG - chr7_1:74057968-74057987 Msa1037420:CDS 65.0%
GTGGTCTCTGGTGGCTCTCG+AGG - chr7_1:74057977-74057996 Msa1037420:CDS 65.0%
! GGTGGCTCTCGAGGGTATGG+TGG - chr7_1:74057986-74058005 Msa1037420:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 74055453 74058205 74055453 ID=Msa1037420;Name=Msa1037420
chr7_1 mRNA 74055453 74058205 74055453 ID=Msa1037420-mRNA-1;Parent=Msa1037420;Name=Msa1037420-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.25|0.2|1|0.5|0.4|5|533|326
chr7_1 exon 74055453 74056402 74055453 ID=Msa1037420-mRNA-1:exon:18577;Parent=Msa1037420-mRNA-1
chr7_1 exon 74056737 74056904 74056737 ID=Msa1037420-mRNA-1:exon:18576;Parent=Msa1037420-mRNA-1
chr7_1 exon 74056917 74057109 74056917 ID=Msa1037420-mRNA-1:exon:18575;Parent=Msa1037420-mRNA-1
chr7_1 exon 74057923 74058019 74057923 ID=Msa1037420-mRNA-1:exon:18574;Parent=Msa1037420-mRNA-1
chr7_1 exon 74058100 74058205 74058100 ID=Msa1037420-mRNA-1:exon:18573;Parent=Msa1037420-mRNA-1
chr7_1 CDS 74058100 74058205 74058100 ID=Msa1037420-mRNA-1:cds;Parent=Msa1037420-mRNA-1
chr7_1 CDS 74057923 74058019 74057923 ID=Msa1037420-mRNA-1:cds;Parent=Msa1037420-mRNA-1
chr7_1 CDS 74056917 74057109 74056917 ID=Msa1037420-mRNA-1:cds;Parent=Msa1037420-mRNA-1
chr7_1 CDS 74056737 74056904 74056737 ID=Msa1037420-mRNA-1:cds;Parent=Msa1037420-mRNA-1
chr7_1 CDS 74055986 74056402 74055986 ID=Msa1037420-mRNA-1:cds;Parent=Msa1037420-mRNA-1
chr7_1 three_prime_UTR 74055453 74055985 74055453 ID=Msa1037420-mRNA-1:three_prime_utr;Parent=Msa1037420-mRNA-1
Gene Sequence

>Msa1037420

ATGCCTTCGGTACCTATTCAACTTCTTCTTGTTCCTTTTTTCAACAATTTTCATAATGGATCTTCTTCTCATCGTCTGAAACCTCTTGAAAAAAGTGATAGACGTGTTGTTGTTGTTACTGTTATTGTTGTTTCTGCTCTAAACTTTGTACAAGTTGATCGTTTGAAGAATCAGGGATCTAGTGATTTTCTTGTTTTGAGATTATTAGTGATAGTACCTAATAGTCTGATACACCTTATGGAAGTGTGCTCTTCTGTTAATGACATGCACGAGAACTGCATAAGTAATCTCGAAAGCACTTTCAGCAAGTCATTGCATATACAAGATACTGAGAAATCTGAACATTTGTCTGAGGGGGATGCGATGTGCAATGTAGCCAAGGAAAACTCAAGTGGGAAAGAATCAAAACCCAACATGGTGTGTTTGAAAAAATCTGCAACCTTTCCAATTCCTCATGCGACGTTGCCTTCAAGCTCGTCTGACGAGGACGCTGATTCATCAGTTATAGAATCGCCTCATGAGCATTCTGCTCATCAAGCTTACTCTCGTTCGATATCTCTGCCTGCTCCTTCGGAGCTCAAATCTGCCTTGAAAGGTAGCCGTGATAAAAACGGTGAACCACATAGGAAATTGACGGTGAAATGGGCTGCTGATGTGTATGATCCTATACCTACACTAGTGTCGCACACTGTCAAAAACAAGAAACAGCCGAAATCCAGGAAAAAGAAGAATGAAAAGAAAAATGTAAAGAAAGGTAACAAGGGGAATTCAACCCGAGGGGGCAATGGCAAAGATAAGAAGCAGTCTCGCAACGTTGGTGGGCAATCTGATCTGTGCAGTAAGTCGTGGGATTCTCAAGTTATTGAAGGTTCCTCTGAATTTGACTCTCTTGATGTTTGTAGCCAAGATTCAAACTGCGGAAGCAGTTTCTTGAAAAAATCTGTTACAGAAGTGCATTACTCAGTTGCGGAAGCACAATGA

Protein sequence

>Msa1037420

MPSVPIQLLLVPFFNNFHNGSSSHRLKPLEKSDRRVVVVTVIVVSALNFVQVDRLKNQGSSDFLVLRLLVIVPNSLIHLMEVCSSVNDMHENCISNLESTFSKSLHIQDTEKSEHLSEGDAMCNVAKENSSGKESKPNMVCLKKSATFPIPHATLPSSSSDEDADSSVIESPHEHSAHQAYSRSISLPAPSELKSALKGSRDKNGEPHRKLTVKWAADVYDPIPTLVSHTVKNKKQPKSRKKKNEKKNVKKGNKGNSTRGGNGKDKKQSRNVGGQSDLCSKSWDSQVIEGSSEFDSLDVCSQDSNCGSSFLKKSVTEVHYSVAEAQ*