AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1294820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1294820 MtrunA17_Chr8g0372051 99.419 344 2 0 1 344 1 344 0.0 683
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1294820 AT2G17990.1 57.429 350 131 5 1 344 1 338 7.66e-129 372
Msa1294820 AT2G17990.3 57.429 350 131 5 1 344 11 348 1.18e-128 372
Msa1294820 AT5G66250.1 52.326 344 122 4 1 341 1 305 1.05e-104 310
Msa1294820 AT5G66250.3 52.326 344 122 4 1 341 1 305 1.05e-104 310
Msa1294820 AT5G66250.2 52.326 344 122 4 1 341 1 305 1.05e-104 310
Msa1294820 AT5G66250.4 49.451 364 122 5 1 341 1 325 1.29e-99 297
Msa1294820 AT2G17990.2 51.525 295 125 5 1 289 1 283 7.07e-92 277
Msa1294820 AT4G36105.1 43.894 303 99 8 44 344 12 245 1.37e-58 189
Msa1294820 AT4G36105.2 43.791 306 101 8 44 344 12 251 3.79e-58 189

Find 72 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGGCATTCATGATGTTTA+TGG 0.159770 8_3:-52735084 None:intergenic
CAAACAGCTTCTCAATAGTT+TGG 0.270471 8_3:-52733321 None:intergenic
AGATTCGAAGAAGGAATTAG+AGG 0.325568 8_3:+52732646 Msa1294820:CDS
TGGAAAGACTACTCAATTAG+AGG 0.329240 8_3:+52734846 Msa1294820:CDS
AAAGAGTTGGTGATCTGATA+TGG 0.346095 8_3:+52731858 Msa1294820:five_prime_UTR
CAAAGACGGAGTTCCGTTAT+CGG 0.352043 8_3:+52732802 Msa1294820:CDS
AATGTCTCTTCACTGTAAAC+TGG 0.371375 8_3:+52735221 Msa1294820:three_prime_UTR
AGAGCTTAGTCGAGTGAAAC+AGG 0.376727 8_3:+52733222 Msa1294820:CDS
TCTTCTTCTTCACCCTTCTC+AGG 0.377042 8_3:+52731981 Msa1294820:five_prime_UTR
GCAATACATCTACTTGAGAT+TGG 0.380445 8_3:-52732577 None:intergenic
ACTTTACTCGAGGGAAAGAT+AGG 0.390209 8_3:+52731911 Msa1294820:five_prime_UTR
GCAAAGAGTTGCGGATTTGA+TGG 0.395456 8_3:+52733156 Msa1294820:CDS
ATGAAGAAGATGCAGAATCT+TGG 0.395594 8_3:+52732858 Msa1294820:CDS
GGCTGAAGTTCAGAAACTTA+TGG 0.400188 8_3:+52734888 Msa1294820:CDS
TCAAGGTTTGTTAGACGAAC+AGG 0.402755 8_3:+52732898 Msa1294820:CDS
GAACATGTCTATGAAATTAG+AGG 0.405432 8_3:+52733084 Msa1294820:CDS
GTCGGGTTTGAAGTCTTTGT+CGG 0.406613 8_3:+52732514 Msa1294820:CDS
TGAGATAAAGGCGAGTATAC+AGG 0.416491 8_3:+52732613 Msa1294820:CDS
GATTTCTCAGTATAAATCAT+TGG 0.420923 8_3:-52735292 None:intergenic
GAACAGGATGCTGTTTATAT+AGG 0.424901 8_3:+52732914 Msa1294820:CDS
GCACACCAAGTTTACATTCC+AGG 0.426116 8_3:-52735170 None:intergenic
TTCCGTTATCGGATTGGTCT+AGG 0.426402 8_3:+52732813 Msa1294820:CDS
TACTCTACAGAACTTGTTTG+AGG 0.426684 8_3:+52735025 Msa1294820:three_prime_UTR
CAAGAAAGAAGCTCAACTTC+TGG 0.441607 8_3:+52734942 Msa1294820:CDS
ATCGGAAACTGCACTTGAAA+AGG 0.451142 8_3:+52733009 Msa1294820:CDS
TCCCGGATTCAATTCTGAAA+AGG 0.452827 8_3:-52735137 None:intergenic
TCTTGGGAGCACAGGCTAGT+TGG 0.465821 8_3:+52734826 Msa1294820:intron
GTCTATGAAATTAGAGGAGA+TGG 0.468338 8_3:+52733090 Msa1294820:CDS
TCGGGTTTGAAGTCTTTGTC+GGG 0.479321 8_3:+52732515 Msa1294820:CDS
GGCTTATCTCTAGCATCTGA+TGG 0.482565 8_3:-52735271 None:intergenic
GGTGAAGATATTGCAATGTC+GGG 0.484131 8_3:+52732497 Msa1294820:CDS
GATTTATACTGAGAAATCCT+TGG 0.505813 8_3:+52735297 Msa1294820:three_prime_UTR
ACGGAGTTCCGTTATCGGAT+TGG 0.507338 8_3:+52732807 Msa1294820:CDS
TTCAGAAGAAGATTCGAAGA+AGG 0.513804 8_3:+52732637 Msa1294820:CDS
TGATGGAAGCTCTTGTGAAA+AGG 0.517318 8_3:+52732972 Msa1294820:CDS
CACACCAAGTTTACATTCCA+GGG 0.522799 8_3:-52735169 None:intergenic
GATGGAAGCTCTTGTGAAAA+GGG 0.523267 8_3:+52732973 Msa1294820:CDS
AAAGTCAAAAGCTAGAATCA+TGG 0.527633 8_3:+52732715 Msa1294820:CDS
TCTTGTGATACGTGGAAGGA+AGG 0.528893 8_3:+52732542 Msa1294820:CDS
AAGAAGAAGAAGACGATGAG+AGG 0.537009 8_3:-52731968 None:intergenic
GGGTGAAGATATTGCAATGT+CGG 0.539200 8_3:+52732496 Msa1294820:CDS
TTCCTAGACCAATCCGATAA+CGG 0.544675 8_3:-52732815 None:intergenic
TTTGATTCCACACGACGTAT+GGG 0.547413 8_3:-52732753 None:intergenic
CGATATGCGGCAAAGAGTTG+CGG 0.550984 8_3:+52733147 Msa1294820:CDS
GAGATAAAGGCGAGTATACA+GGG 0.558828 8_3:+52732614 Msa1294820:CDS
GAATGAACAATGTAAGATGA+TGG 0.563082 8_3:+52734969 Msa1294820:CDS
CATTGAACAGGAAATGGCGG+CGG 0.565017 8_3:+52732475 Msa1294820:intron
GGGTGAGAAAATGCAGAAAG+AGG 0.568232 8_3:+52734867 Msa1294820:CDS
AAGAAGAAGACGATGAGAGG+TGG 0.570612 8_3:-52731965 None:intergenic
GAAGATGCAGAATCTTGGAT+AGG 0.574114 8_3:+52732863 Msa1294820:CDS
TCAAGAATAAAGGAAAGAGT+TGG 0.575996 8_3:+52731845 Msa1294820:five_prime_UTR
CACAAGAGCTTCCATCACAT+CGG 0.577039 8_3:-52732966 None:intergenic
CGGGTCAATCTTGTGATACG+TGG 0.590071 8_3:+52732534 Msa1294820:CDS
CTTGTGATACGTGGAAGGAA+GGG 0.592666 8_3:+52732543 Msa1294820:CDS
TTAATTCATAAAAGTAAGTG+CGG 0.593942 8_3:-52731805 None:intergenic
CTATTGAGAAGCTGTTTGAA+CGG 0.594283 8_3:+52733326 Msa1294820:CDS
ATTGAACAGGAAATGGCGGC+GGG 0.595048 8_3:+52732476 Msa1294820:intron
GATACTGAACTCTGTTCAGA+TGG 0.598085 8_3:+52732940 Msa1294820:CDS
TCAGATGGTCACCGATGTGA+TGG 0.600291 8_3:+52732955 Msa1294820:CDS
GGAAAGACTACTCAATTAGA+GGG 0.606384 8_3:+52734847 Msa1294820:CDS
AGAGAGAGAGAACCTGAGAA+GGG 0.608775 8_3:-52731993 None:intergenic
TGATACGTGGAAGGAAGGGA+TGG 0.610710 8_3:+52732547 Msa1294820:CDS
TCAATCTTGTGATACGTGGA+AGG 0.612583 8_3:+52732538 Msa1294820:CDS
GTAGGGGTTGTTGACAAAGA+CGG 0.612947 8_3:+52732788 Msa1294820:CDS
ATAGGAATTAGCCGTCGTCA+AGG 0.629921 8_3:+52732881 Msa1294820:CDS
TAGTAGTCTAATCACAGTGA+GGG 0.635665 8_3:+52733270 Msa1294820:CDS
GATGGATTATTCGTGATGTG+AGG 0.651093 8_3:-52735253 None:intergenic
AGACGATGAGAGGTGGATCG+TGG 0.653406 8_3:-52731958 None:intergenic
GACATATTGAGGGACTATCG+TGG 0.663169 8_3:+52731768 None:intergenic
CAACATTGAACAGGAAATGG+CGG 0.667545 8_3:+52732472 Msa1294820:intron
CGTCTAACAAACCTTGACGA+CGG 0.718113 8_3:-52732892 None:intergenic
TTAGTAGTCTAATCACAGTG+AGG 0.744586 8_3:+52733269 Msa1294820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATACTTTATTATAGAATTT+GGG - chr8_3:52732240-52732259 None:intergenic 10.0%
!! ATATACTTTATTATAGAATT+TGG - chr8_3:52732241-52732260 None:intergenic 10.0%
!!! AATTTTGTATAAAATTATCT+GGG - chr8_3:52734085-52734104 None:intergenic 10.0%
!!! AGATAATTTTATACAAAATT+GGG + chr8_3:52734085-52734104 Msa1294820:intron 10.0%
!! AAAATTAAACTTCAGAATTA+AGG - chr8_3:52733584-52733603 None:intergenic 15.0%
!!! AAGTTTAATTTTCTTCATTA+TGG + chr8_3:52733592-52733611 Msa1294820:intron 15.0%
!! CACAAAACAAATAATTTATT+AGG - chr8_3:52733756-52733775 None:intergenic 15.0%
!!! TTTTAAATTACACGTTAATT+TGG + chr8_3:52733920-52733939 Msa1294820:intron 15.0%
!!! CAATTTTGTATAAAATTATC+TGG - chr8_3:52734086-52734105 None:intergenic 15.0%
!!! CAGATAATTTTATACAAAAT+TGG + chr8_3:52734084-52734103 Msa1294820:intron 15.0%
!! TTAATTCATAAAAGTAAGTG+CGG - chr8_3:52731808-52731827 None:intergenic 20.0%
!! TATAGAAGAATGAAATCAAA+GGG - chr8_3:52732053-52732072 None:intergenic 20.0%
!! ATATAGAAGAATGAAATCAA+AGG - chr8_3:52732054-52732073 None:intergenic 20.0%
!!! TATCTTTTAATTTTCCAGAT+CGG + chr8_3:52732109-52732128 Msa1294820:intron 20.0%
!! AATGAAGTAAAACAATTAGT+GGG - chr8_3:52732183-52732202 None:intergenic 20.0%
!! AAATGAAGTAAAACAATTAG+TGG - chr8_3:52732184-52732203 None:intergenic 20.0%
!! TTTATGCAAATTGAAAACAT+TGG + chr8_3:52732389-52732408 Msa1294820:intron 20.0%
!!! TATATTGATGCATATGTTTT+TGG + chr8_3:52732423-52732442 Msa1294820:intron 20.0%
!! AGAAAAAGTTAATGAGATAA+AGG + chr8_3:52732601-52732620 Msa1294820:CDS 20.0%
!! TACATCCTTTGATTAATTTA+AGG + chr8_3:52733636-52733655 Msa1294820:intron 20.0%
!! ACATCCTTTGATTAATTTAA+GGG + chr8_3:52733637-52733656 Msa1294820:intron 20.0%
!!! TCATTTTTAAAGCCATAATT+TGG + chr8_3:52733964-52733983 Msa1294820:intron 20.0%
!!! TTTTTTATCATCGTAAAATC+TGG + chr8_3:52734011-52734030 Msa1294820:intron 20.0%
!! TTATACAAAATTGGGTATTA+TGG + chr8_3:52734093-52734112 Msa1294820:intron 20.0%
!! TATACAAAATTGGGTATTAT+GGG + chr8_3:52734094-52734113 Msa1294820:intron 20.0%
!! TACATAAGCAATTATATGAT+AGG + chr8_3:52734495-52734514 Msa1294820:intron 20.0%
!! TTAAAAGTTAACTATCAAAG+AGG - chr8_3:52734586-52734605 None:intergenic 20.0%
!!! TCTTTGATAGTTAACTTTTA+AGG + chr8_3:52734585-52734604 Msa1294820:intron 20.0%
!!! CTTTGATAGTTAACTTTTAA+GGG + chr8_3:52734586-52734605 Msa1294820:intron 20.0%
!! AAAATAAAAATCATGCAGTA+AGG - chr8_3:52734807-52734826 None:intergenic 20.0%
!!! TGCATGATTTTTATTTTCTT+GGG + chr8_3:52734810-52734829 Msa1294820:intron 20.0%
!!! ACTGTGTAAAAGATATTTTT+CGG - chr8_3:52735395-52735414 None:intergenic 20.0%
!!! AAAAATATCTTTTACACAGT+TGG + chr8_3:52735395-52735414 Msa1294820:three_prime_UTR 20.0%
! AAAAAGACACTCAAGAATAA+AGG + chr8_3:52731835-52731854 Msa1294820:five_prime_UTR 25.0%
! ATAGAAGAATGAAATCAAAG+GGG - chr8_3:52732052-52732071 None:intergenic 25.0%
!!! TCGGTTTAAACTTCATTTTT+TGG + chr8_3:52732128-52732147 Msa1294820:intron 25.0%
!!! CGGTTTAAACTTCATTTTTT+GGG + chr8_3:52732129-52732148 Msa1294820:intron 25.0%
!!! GGTTTAAACTTCATTTTTTG+GGG + chr8_3:52732130-52732149 Msa1294820:intron 25.0%
!!! GTTTAAACTTCATTTTTTGG+GGG + chr8_3:52732131-52732150 Msa1294820:intron 25.0%
!!! TTTAAACTTCATTTTTTGGG+GGG + chr8_3:52732132-52732151 Msa1294820:intron 25.0%
!! TATTATTGATTGCTCTTTGA+TGG + chr8_3:52732324-52732343 Msa1294820:intron 25.0%
!! ATTATTGATTGCTCTTTGAT+GGG + chr8_3:52732325-52732344 Msa1294820:intron 25.0%
!!! ATAGTATTTTGAACGATATG+CGG + chr8_3:52733134-52733153 Msa1294820:CDS 25.0%
! AATTTAGCATGAAATTATGC+AGG - chr8_3:52733456-52733475 None:intergenic 25.0%
!!! TTATGAGTTTTCTTGATGAT+AGG + chr8_3:52733488-52733507 Msa1294820:intron 25.0%
! CATTCCCTTAAATTAATCAA+AGG - chr8_3:52733644-52733663 None:intergenic 25.0%
!! CTTATCTATCCAATTTGTTT+AGG + chr8_3:52733698-52733717 Msa1294820:intron 25.0%
! ATTAGGATGATCTATGTTAT+TGG - chr8_3:52733739-52733758 None:intergenic 25.0%
!!! TTTCCTAAGTTTTTTGCTTT+GGG + chr8_3:52733831-52733850 Msa1294820:intron 25.0%
!!! TTTTAAAGCCATAATTTGGA+TGG + chr8_3:52733968-52733987 Msa1294820:intron 25.0%
! GTATAAAATTATCTGGGAAA+AGG - chr8_3:52734079-52734098 None:intergenic 25.0%
!!! CTTATTTTTATGAGCTTTCT+AGG + chr8_3:52734225-52734244 Msa1294820:intron 25.0%
!! AGGTCAAATTGTTTTCATAT+AGG - chr8_3:52734278-52734297 None:intergenic 25.0%
! CTTTAACAAAAGATAAAACG+AGG - chr8_3:52734298-52734317 None:intergenic 25.0%
!!! ATTAAGTTGTTTCTCCAAAT+AGG + chr8_3:52734539-52734558 Msa1294820:intron 25.0%
! AAATCACTTAAGATCCTATT+TGG - chr8_3:52734556-52734575 None:intergenic 25.0%
! AAATAGGATCTTAAGTGATT+TGG + chr8_3:52734555-52734574 Msa1294820:intron 25.0%
!! TATAGGAGTATAATTACGAT+GGG - chr8_3:52734635-52734654 None:intergenic 25.0%
!! ATATAGGAGTATAATTACGA+TGG - chr8_3:52734636-52734655 None:intergenic 25.0%
!!! CTGCATGATTTTTATTTTCT+TGG + chr8_3:52734809-52734828 Msa1294820:intron 25.0%
!!! ATGCCTTTTTTTTCATTTTC+TGG + chr8_3:52735099-52735118 Msa1294820:three_prime_UTR 25.0%
! ACACCAGAAAATGAAAAAAA+AGG - chr8_3:52735105-52735124 None:intergenic 25.0%
! GATTTCTCAGTATAAATCAT+TGG - chr8_3:52735295-52735314 None:intergenic 25.0%
TCAAGAATAAAGGAAAGAGT+TGG + chr8_3:52731845-52731864 Msa1294820:five_prime_UTR 30.0%
! TGTTTCTTTTACTTTACTCG+AGG + chr8_3:52731901-52731920 Msa1294820:five_prime_UTR 30.0%
! GTTTCTTTTACTTTACTCGA+GGG + chr8_3:52731902-52731921 Msa1294820:five_prime_UTR 30.0%
AAATGAAGTTTAAACCGATC+TGG - chr8_3:52732126-52732145 None:intergenic 30.0%
!!! TTAAACTTCATTTTTTGGGG+GGG + chr8_3:52732133-52732152 Msa1294820:intron 30.0%
! TTATTGATTGCTCTTTGATG+GGG + chr8_3:52732326-52732345 Msa1294820:intron 30.0%
ATTCAACATTGAACAGGAAA+TGG + chr8_3:52732469-52732488 Msa1294820:intron 30.0%
AAAGTCAAAAGCTAGAATCA+TGG + chr8_3:52732715-52732734 Msa1294820:CDS 30.0%
!! TCTTGTGAAAAGGGTTTTAT+TGG + chr8_3:52732982-52733001 Msa1294820:CDS 30.0%
GAAAAGGAAAAAGTGAGTTT+AGG + chr8_3:52733025-52733044 Msa1294820:CDS 30.0%
GAACATGTCTATGAAATTAG+AGG + chr8_3:52733084-52733103 Msa1294820:CDS 30.0%
! TCTATCCAATTTGTTTAGGT+TGG + chr8_3:52733702-52733721 Msa1294820:intron 30.0%
AGAAACCAACCTAAACAAAT+TGG - chr8_3:52733710-52733729 None:intergenic 30.0%
!!! CTTTCCTAAGTTTTTTGCTT+TGG + chr8_3:52733830-52733849 Msa1294820:intron 30.0%
ATACCCAAAGCAAAAAACTT+AGG - chr8_3:52733837-52733856 None:intergenic 30.0%
ACAATAGCAAGTGAAAAGTA+TGG + chr8_3:52733895-52733914 Msa1294820:intron 30.0%
TTTCAAAGCCATCCAAATTA+TGG - chr8_3:52733979-52733998 None:intergenic 30.0%
! AAATGGGTTCATAAGCTTAT+AGG - chr8_3:52734344-52734363 None:intergenic 30.0%
TATAAGCTTATGAACCCATT+TGG + chr8_3:52734343-52734362 Msa1294820:intron 30.0%
ATAAGCTTATGAACCCATTT+GGG + chr8_3:52734344-52734363 Msa1294820:intron 30.0%
!! TGATAGTTAACTTTTAAGGG+AGG + chr8_3:52734589-52734608 Msa1294820:intron 30.0%
!! GATAGTTAACTTTTAAGGGA+GGG + chr8_3:52734590-52734609 Msa1294820:intron 30.0%
TCCTATATCATTGTGTTTGT+TGG + chr8_3:52734648-52734667 Msa1294820:intron 30.0%
CCTATATCATTGTGTTTGTT+GGG + chr8_3:52734649-52734668 Msa1294820:intron 30.0%
GAATGAACAATGTAAGATGA+TGG + chr8_3:52734969-52734988 Msa1294820:CDS 30.0%
!! AAAGGCATTCATGATGTTTA+TGG - chr8_3:52735087-52735106 None:intergenic 30.0%
GATTTATACTGAGAAATCCT+TGG + chr8_3:52735297-52735316 Msa1294820:three_prime_UTR 30.0%
! CTTTTTACATTGTTAGTGCA+AGG - chr8_3:52735357-52735376 None:intergenic 30.0%
!! AAAGAGTTGGTGATCTGATA+TGG + chr8_3:52731858-52731877 Msa1294820:five_prime_UTR 35.0%
!!! TAAACTTCATTTTTTGGGGG+GGG + chr8_3:52732134-52732153 Msa1294820:intron 35.0%
! TATTGATTGCTCTTTGATGG+GGG + chr8_3:52732327-52732346 Msa1294820:intron 35.0%
!! TTTGGATTTCTAGTTGCAAC+AGG + chr8_3:52732355-52732374 Msa1294820:intron 35.0%
TAGTTGCAACAGGATTGTTT+AGG + chr8_3:52732365-52732384 Msa1294820:intron 35.0%
AGTTGCAACAGGATTGTTTA+GGG + chr8_3:52732366-52732385 Msa1294820:intron 35.0%
GATCGTATTCAACATTGAAC+AGG + chr8_3:52732463-52732482 Msa1294820:intron 35.0%
GCAATACATCTACTTGAGAT+TGG - chr8_3:52732580-52732599 None:intergenic 35.0%
TTCAGAAGAAGATTCGAAGA+AGG + chr8_3:52732637-52732656 Msa1294820:CDS 35.0%
AGATTCGAAGAAGGAATTAG+AGG + chr8_3:52732646-52732665 Msa1294820:CDS 35.0%
! AGAAGGAATTAGAGGTTTTG+TGG + chr8_3:52732654-52732673 Msa1294820:CDS 35.0%
TGTGGAATCAAAAAGTTGGA+TGG + chr8_3:52732764-52732783 Msa1294820:CDS 35.0%
GTGGAATCAAAAAGTTGGAT+GGG + chr8_3:52732765-52732784 Msa1294820:CDS 35.0%
TGGAATCAAAAAGTTGGATG+GGG + chr8_3:52732766-52732785 Msa1294820:CDS 35.0%
ATGAAGAAGATGCAGAATCT+TGG + chr8_3:52732858-52732877 Msa1294820:CDS 35.0%
! GAACAGGATGCTGTTTATAT+AGG + chr8_3:52732914-52732933 Msa1294820:CDS 35.0%
!!! TGTGAAAAGGGTTTTATTGG+CGG + chr8_3:52732985-52733004 Msa1294820:CDS 35.0%
GTCTATGAAATTAGAGGAGA+TGG + chr8_3:52733090-52733109 Msa1294820:CDS 35.0%
TTAGTAGTCTAATCACAGTG+AGG + chr8_3:52733269-52733288 Msa1294820:CDS 35.0%
TAGTAGTCTAATCACAGTGA+GGG + chr8_3:52733270-52733289 Msa1294820:CDS 35.0%
!! AGTTTGGAATTGCTTTTCTG+AGG - chr8_3:52733308-52733327 None:intergenic 35.0%
CAAACAGCTTCTCAATAGTT+TGG - chr8_3:52733324-52733343 None:intergenic 35.0%
CTATTGAGAAGCTGTTTGAA+CGG + chr8_3:52733326-52733345 Msa1294820:CDS 35.0%
CAAGTGTCTTGACTATTATC+TGG + chr8_3:52733380-52733399 Msa1294820:intron 35.0%
TTCAGAATTAAGGACCTGTT+TGG - chr8_3:52733574-52733593 None:intergenic 35.0%
!! CTTCATAGAAGTGCTAAGAA+AGG - chr8_3:52733671-52733690 None:intergenic 35.0%
!!! ACTTTTCACTTGCTATTGTG+TGG - chr8_3:52733894-52733913 None:intergenic 35.0%
!! TCTGGCTTAGAATATGCTTT+TGG + chr8_3:52734029-52734048 Msa1294820:intron 35.0%
GACTGTTTGAGAGAGTTTAT+AGG + chr8_3:52734168-52734187 Msa1294820:intron 35.0%
CCCAACAAACACAATGATAT+AGG - chr8_3:52734652-52734671 None:intergenic 35.0%
!! TGTGTTTGTTGGGTTTTTCT+TGG + chr8_3:52734659-52734678 Msa1294820:intron 35.0%
!! GTGTTTGTTGGGTTTTTCTT+GGG + chr8_3:52734660-52734679 Msa1294820:intron 35.0%
AATTGCAGTGTTCACATAGA+AGG + chr8_3:52734749-52734768 Msa1294820:intron 35.0%
!!! TTTTATTTTCTTGGGAGCAC+AGG + chr8_3:52734818-52734837 Msa1294820:intron 35.0%
TGGAAAGACTACTCAATTAG+AGG + chr8_3:52734846-52734865 Msa1294820:CDS 35.0%
GGAAAGACTACTCAATTAGA+GGG + chr8_3:52734847-52734866 Msa1294820:CDS 35.0%
! TACTCTACAGAACTTGTTTG+AGG + chr8_3:52735025-52735044 Msa1294820:three_prime_UTR 35.0%
!! GTCCTGAAAAAAAGCATCAT+TGG + chr8_3:52735055-52735074 Msa1294820:three_prime_UTR 35.0%
!!! CTCCAATGATGCTTTTTTTC+AGG - chr8_3:52735060-52735079 None:intergenic 35.0%
! TGCCTTTTCAGAATTGAATC+CGG + chr8_3:52735135-52735154 Msa1294820:three_prime_UTR 35.0%
TTCCAGGGAAAAATATTTCC+CGG - chr8_3:52735157-52735176 None:intergenic 35.0%
! TTTTCCCTGGAATGTAAACT+TGG + chr8_3:52735165-52735184 Msa1294820:three_prime_UTR 35.0%
AATGTCTCTTCACTGTAAAC+TGG + chr8_3:52735221-52735240 Msa1294820:three_prime_UTR 35.0%
ACTTTACTCGAGGGAAAGAT+AGG + chr8_3:52731911-52731930 Msa1294820:five_prime_UTR 40.0%
AAGAAGAAGAAGACGATGAG+AGG - chr8_3:52731971-52731990 None:intergenic 40.0%
!!! AAACTTCATTTTTTGGGGGG+GGG + chr8_3:52732135-52732154 Msa1294820:intron 40.0%
TCTTTGATGGGGGTTTACTT+TGG + chr8_3:52732337-52732356 Msa1294820:intron 40.0%
CAACATTGAACAGGAAATGG+CGG + chr8_3:52732472-52732491 Msa1294820:intron 40.0%
GGGTGAAGATATTGCAATGT+CGG + chr8_3:52732496-52732515 Msa1294820:CDS 40.0%
GGTGAAGATATTGCAATGTC+GGG + chr8_3:52732497-52732516 Msa1294820:CDS 40.0%
TCAATCTTGTGATACGTGGA+AGG + chr8_3:52732538-52732557 Msa1294820:CDS 40.0%
TGAGATAAAGGCGAGTATAC+AGG + chr8_3:52732613-52732632 Msa1294820:CDS 40.0%
GAGATAAAGGCGAGTATACA+GGG + chr8_3:52732614-52732633 Msa1294820:CDS 40.0%
TTTGATTCCACACGACGTAT+GGG - chr8_3:52732756-52732775 None:intergenic 40.0%
!! TTTTGATTCCACACGACGTA+TGG - chr8_3:52732757-52732776 None:intergenic 40.0%
GTCGTGTGGAATCAAAAAGT+TGG + chr8_3:52732760-52732779 Msa1294820:CDS 40.0%
ATCAAAAAGTTGGATGGGGT+AGG + chr8_3:52732770-52732789 Msa1294820:CDS 40.0%
TCAAAAAGTTGGATGGGGTA+GGG + chr8_3:52732771-52732790 Msa1294820:CDS 40.0%
TTCCTAGACCAATCCGATAA+CGG - chr8_3:52732818-52732837 None:intergenic 40.0%
GAAGATGCAGAATCTTGGAT+AGG + chr8_3:52732863-52732882 Msa1294820:CDS 40.0%
!! TCAAGGTTTGTTAGACGAAC+AGG + chr8_3:52732898-52732917 Msa1294820:CDS 40.0%
GATACTGAACTCTGTTCAGA+TGG + chr8_3:52732940-52732959 Msa1294820:CDS 40.0%
TGATGGAAGCTCTTGTGAAA+AGG + chr8_3:52732972-52732991 Msa1294820:CDS 40.0%
GATGGAAGCTCTTGTGAAAA+GGG + chr8_3:52732973-52732992 Msa1294820:CDS 40.0%
!!! AAGGGTTTTATTGGCGGAAT+CGG + chr8_3:52732991-52733010 Msa1294820:CDS 40.0%
ATCGGAAACTGCACTTGAAA+AGG + chr8_3:52733009-52733028 Msa1294820:CDS 40.0%
GGAAAAAGTGAGTTTAGGTC+AGG + chr8_3:52733030-52733049 Msa1294820:CDS 40.0%
! TTTTTCGTTTGACCTAGTCG+TGG + chr8_3:52733420-52733439 Msa1294820:intron 40.0%
AATTAAGGACCTGTTTGGCA+TGG - chr8_3:52733569-52733588 None:intergenic 40.0%
!! CATAGAAGTGCTAAGAAAGG+AGG - chr8_3:52733668-52733687 None:intergenic 40.0%
GAACATGGCAACTTTCAACA+AGG - chr8_3:52733790-52733809 None:intergenic 40.0%
ACCAAAAGACATCGTGAACA+TGG - chr8_3:52733805-52733824 None:intergenic 40.0%
! TTTGTTGGGTTTTTCTTGGG+TGG + chr8_3:52734663-52734682 Msa1294820:intron 40.0%
! TTGTTGGGTTTTTCTTGGGT+GGG + chr8_3:52734664-52734683 Msa1294820:intron 40.0%
GGCTGAAGTTCAGAAACTTA+TGG + chr8_3:52734888-52734907 Msa1294820:CDS 40.0%
CAAGAAAGAAGCTCAACTTC+TGG + chr8_3:52734942-52734961 Msa1294820:CDS 40.0%
! GCCTTTTCAGAATTGAATCC+GGG + chr8_3:52735136-52735155 Msa1294820:three_prime_UTR 40.0%
! TCCCGGATTCAATTCTGAAA+AGG - chr8_3:52735140-52735159 None:intergenic 40.0%
! ATCCGGGAAATATTTTTCCC+TGG + chr8_3:52735152-52735171 Msa1294820:three_prime_UTR 40.0%
CACACCAAGTTTACATTCCA+GGG - chr8_3:52735172-52735191 None:intergenic 40.0%
!! GATGGATTATTCGTGATGTG+AGG - chr8_3:52735256-52735275 None:intergenic 40.0%
!!! CTTTTGCTAAAAGAGCACCA+AGG - chr8_3:52735317-52735336 None:intergenic 40.0%
! GGTGCTCTTTTAGCAAAAGA+AGG + chr8_3:52735318-52735337 Msa1294820:three_prime_UTR 40.0%
AAGAAGAAGACGATGAGAGG+TGG - chr8_3:52731968-52731987 None:intergenic 45.0%
TCTTCTTCTTCACCCTTCTC+AGG + chr8_3:52731981-52732000 Msa1294820:five_prime_UTR 45.0%
AGAGAGAGAGAACCTGAGAA+GGG - chr8_3:52731996-52732015 None:intergenic 45.0%
! GTCGGGTTTGAAGTCTTTGT+CGG + chr8_3:52732514-52732533 Msa1294820:CDS 45.0%
! TCGGGTTTGAAGTCTTTGTC+GGG + chr8_3:52732515-52732534 Msa1294820:CDS 45.0%
TCTTGTGATACGTGGAAGGA+AGG + chr8_3:52732542-52732561 Msa1294820:CDS 45.0%
CTTGTGATACGTGGAAGGAA+GGG + chr8_3:52732543-52732562 Msa1294820:CDS 45.0%
CAAAAAGTTGGATGGGGTAG+GGG + chr8_3:52732772-52732791 Msa1294820:CDS 45.0%
GTAGGGGTTGTTGACAAAGA+CGG + chr8_3:52732788-52732807 Msa1294820:CDS 45.0%
CAAAGACGGAGTTCCGTTAT+CGG + chr8_3:52732802-52732821 Msa1294820:CDS 45.0%
!! TTCCGTTATCGGATTGGTCT+AGG + chr8_3:52732813-52732832 Msa1294820:CDS 45.0%
ATAGGAATTAGCCGTCGTCA+AGG + chr8_3:52732881-52732900 Msa1294820:CDS 45.0%
CGTCTAACAAACCTTGACGA+CGG - chr8_3:52732895-52732914 None:intergenic 45.0%
CACAAGAGCTTCCATCACAT+CGG - chr8_3:52732969-52732988 None:intergenic 45.0%
GCAAAGAGTTGCGGATTTGA+TGG + chr8_3:52733156-52733175 Msa1294820:CDS 45.0%
AGAGCTTAGTCGAGTGAAAC+AGG + chr8_3:52733222-52733241 Msa1294820:CDS 45.0%
AGTTCACAACCATGCCAAAC+AGG + chr8_3:52733557-52733576 Msa1294820:intron 45.0%
! GCCATGTTCACGATGTCTTT+TGG + chr8_3:52733801-52733820 Msa1294820:intron 45.0%
TATTGTGTGGAGAGAGTGAC+AGG - chr8_3:52733881-52733900 None:intergenic 45.0%
GCATCTCATACTACTCGATG+TGG - chr8_3:52734131-52734150 None:intergenic 45.0%
GCTTATGAACCCATTTGGGT+TGG + chr8_3:52734348-52734367 Msa1294820:intron 45.0%
GAAACGAACCTAAGACCTTG+AGG - chr8_3:52734412-52734431 None:intergenic 45.0%
TTTCTCCCCGGAGCTAATTT+GGG + chr8_3:52734428-52734447 Msa1294820:intron 45.0%
GATGGGCATCTAAGTACTTG+GGG - chr8_3:52734618-52734637 None:intergenic 45.0%
CGATGGGCATCTAAGTACTT+GGG - chr8_3:52734619-52734638 None:intergenic 45.0%
ACGATGGGCATCTAAGTACT+TGG - chr8_3:52734620-52734639 None:intergenic 45.0%
! TGTTGGGTTTTTCTTGGGTG+GGG + chr8_3:52734665-52734684 Msa1294820:intron 45.0%
GGGTGAGAAAATGCAGAAAG+AGG + chr8_3:52734867-52734886 Msa1294820:CDS 45.0%
GCACACCAAGTTTACATTCC+AGG - chr8_3:52735173-52735192 None:intergenic 45.0%
GGCTTATCTCTAGCATCTGA+TGG - chr8_3:52735274-52735293 None:intergenic 45.0%
GAGAGAGAGAGAACCTGAGA+AGG - chr8_3:52731997-52732016 None:intergenic 50.0%
CATTGAACAGGAAATGGCGG+CGG + chr8_3:52732475-52732494 Msa1294820:intron 50.0%
ATTGAACAGGAAATGGCGGC+GGG + chr8_3:52732476-52732495 Msa1294820:intron 50.0%
CGGGTCAATCTTGTGATACG+TGG + chr8_3:52732534-52732553 Msa1294820:CDS 50.0%
TGATACGTGGAAGGAAGGGA+TGG + chr8_3:52732547-52732566 Msa1294820:CDS 50.0%
ACGGAGTTCCGTTATCGGAT+TGG + chr8_3:52732807-52732826 Msa1294820:CDS 50.0%
TCAGATGGTCACCGATGTGA+TGG + chr8_3:52732955-52732974 Msa1294820:CDS 50.0%
!! GGAGATGGAGCGTTTTGCTT+CGG + chr8_3:52733105-52733124 Msa1294820:CDS 50.0%
!! GAGATGGAGCGTTTTGCTTC+GGG + chr8_3:52733106-52733125 Msa1294820:CDS 50.0%
CGATATGCGGCAAAGAGTTG+CGG + chr8_3:52733147-52733166 Msa1294820:CDS 50.0%
TTCGTTTGACCTAGTCGTGG+TGG + chr8_3:52733423-52733442 Msa1294820:intron 50.0%
! GGAAGTATACCACCACGACT+AGG - chr8_3:52733435-52733454 None:intergenic 50.0%
!! GGAAGCGTCTATCCTTGTTC+AGG + chr8_3:52734050-52734069 Msa1294820:intron 50.0%
GGGAAAAGGTAGCCTGAACA+AGG - chr8_3:52734065-52734084 None:intergenic 50.0%
!! TTGGCCTGGTGGTATTGACT+TGG + chr8_3:52734367-52734386 Msa1294820:intron 50.0%
!! TGGCCTGGTGGTATTGACTT+GGG + chr8_3:52734368-52734387 Msa1294820:intron 50.0%
!! GTGGTATTGACTTGGGACCT+TGG + chr8_3:52734375-52734394 Msa1294820:intron 50.0%
! TTGAGGAGGAGCATACTCCA+AGG - chr8_3:52734395-52734414 None:intergenic 50.0%
TTGGAGTATGCTCCTCCTCA+AGG + chr8_3:52734394-52734413 Msa1294820:intron 50.0%
ATGCTCCTCCTCAAGGTCTT+AGG + chr8_3:52734401-52734420 Msa1294820:intron 50.0%
ACGAACCTAAGACCTTGAGG+AGG - chr8_3:52734409-52734428 None:intergenic 50.0%
GTCTTAGGTTCGTTTCTCCC+CGG + chr8_3:52734416-52734435 Msa1294820:intron 50.0%
GTTTCTCCCCGGAGCTAATT+TGG + chr8_3:52734427-52734446 Msa1294820:intron 50.0%
TAGCCCACCCAAATTAGCTC+CGG - chr8_3:52734438-52734457 None:intergenic 50.0%
! GTTTTTCTTGGGTGGGGACT+GGG + chr8_3:52734671-52734690 Msa1294820:intron 50.0%
! TTTTTCTTGGGTGGGGACTG+GGG + chr8_3:52734672-52734691 Msa1294820:intron 50.0%
AGACGATGAGAGGTGGATCG+TGG - chr8_3:52731961-52731980 None:intergenic 55.0%
!! CACGACGTATGGGCTAGATG+AGG - chr8_3:52732746-52732765 None:intergenic 55.0%
CATCTAGCCCATACGTCGTG+TGG + chr8_3:52732746-52732765 Msa1294820:CDS 55.0%
!! TGAACCCATTTGGGTTGGCC+TGG + chr8_3:52734353-52734372 Msa1294820:intron 55.0%
ACCACCAGGCCAACCCAAAT+GGG - chr8_3:52734360-52734379 None:intergenic 55.0%
TACCACCAGGCCAACCCAAA+TGG - chr8_3:52734361-52734380 None:intergenic 55.0%
GGTCCCAAGTCAATACCACC+AGG - chr8_3:52734374-52734393 None:intergenic 55.0%
TCCCCGGAGCTAATTTGGGT+GGG + chr8_3:52734432-52734451 Msa1294820:intron 55.0%
AGCCCACCCAAATTAGCTCC+GGG - chr8_3:52734437-52734456 None:intergenic 55.0%
! GGTTTTTCTTGGGTGGGGAC+TGG + chr8_3:52734670-52734689 Msa1294820:intron 55.0%
! TTTTCTTGGGTGGGGACTGG+GGG + chr8_3:52734673-52734692 Msa1294820:intron 55.0%
! TCTTGGGAGCACAGGCTAGT+TGG + chr8_3:52734826-52734845 Msa1294820:intron 55.0%
!! ACCCATTTGGGTTGGCCTGG+TGG + chr8_3:52734356-52734375 Msa1294820:intron 60.0%
CTCCCCGGAGCTAATTTGGG+TGG + chr8_3:52734431-52734450 Msa1294820:intron 60.0%
GCCCACCCAAATTAGCTCCG+GGG - chr8_3:52734436-52734455 None:intergenic 60.0%
TCTTGGGTGGGGACTGGGGG+TGG + chr8_3:52734676-52734695 Msa1294820:intron 70.0%
TGGGTGGGGACTGGGGGTGG+TGG + chr8_3:52734679-52734698 Msa1294820:intron 75.0%
GGGTGGGGACTGGGGGTGGT+GGG + chr8_3:52734680-52734699 Msa1294820:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 52731777 52735516 52731777 ID=Msa1294820;Name=Msa1294820
chr8_3 mRNA 52731777 52735516 52731777 ID=Msa1294820-mRNA-1;Parent=Msa1294820;Name=Msa1294820-mRNA-1;_AED=0.04;_eAED=0.04;_QI=229|1|1|1|0.5|0.33|3|502|344
chr8_3 exon 52731777 52732002 52731777 ID=Msa1294820-mRNA-1:exon:14960;Parent=Msa1294820-mRNA-1
chr8_3 exon 52732485 52733347 52732485 ID=Msa1294820-mRNA-1:exon:14961;Parent=Msa1294820-mRNA-1
chr8_3 exon 52734840 52735516 52734840 ID=Msa1294820-mRNA-1:exon:14962;Parent=Msa1294820-mRNA-1
chr8_3 five_prime_UTR 52731777 52732002 52731777 ID=Msa1294820-mRNA-1:five_prime_utr;Parent=Msa1294820-mRNA-1
chr8_3 five_prime_UTR 52732485 52732487 52732485 ID=Msa1294820-mRNA-1:five_prime_utr;Parent=Msa1294820-mRNA-1
chr8_3 CDS 52732488 52733347 52732488 ID=Msa1294820-mRNA-1:cds;Parent=Msa1294820-mRNA-1
chr8_3 CDS 52734840 52735014 52734840 ID=Msa1294820-mRNA-1:cds;Parent=Msa1294820-mRNA-1
chr8_3 three_prime_UTR 52735015 52735516 52735015 ID=Msa1294820-mRNA-1:three_prime_utr;Parent=Msa1294820-mRNA-1
Gene Sequence

>Msa1294820

ATGGCGGCGGGTGAAGATATTGCAATGTCGGGTTTGAAGTCTTTGTCGGGTCAATCTTGTGATACGTGGAAGGAAGGGATGGAAAGAAACCAATCTCAAGTAGATGTATTGCAAGAAAAAGTTAATGAGATAAAGGCGAGTATACAGGGTTCAGAAGAAGATTCGAAGAAGGAATTAGAGGTTTTGTGGAGAAGAGTCAAGACTACTGCTACGTTGCTGAACTACTTAAAGTCAAAAGCTAGAATCATGGCTATTCCTCATCTAGCCCATACGTCGTGTGGAATCAAAAAGTTGGATGGGGTAGGGGTTGTTGACAAAGACGGAGTTCCGTTATCGGATTGGTCTAGGAATGTTGATCTTTCTTCTTTTGATGAAGAAGATGCAGAATCTTGGATAGGAATTAGCCGTCGTCAAGGTTTGTTAGACGAACAGGATGCTGTTTATATAGGTGAGATACTGAACTCTGTTCAGATGGTCACCGATGTGATGGAAGCTCTTGTGAAAAGGGTTTTATTGGCGGAATCGGAAACTGCACTTGAAAAGGAAAAAGTGAGTTTAGGTCAGGAAAAAATTATGCTAAAGTCTGCTCAGTTAGAGAACATGTCTATGAAATTAGAGGAGATGGAGCGTTTTGCTTCGGGTACAAATAGTATTTTGAACGATATGCGGCAAAGAGTTGCGGATTTGATGGAAGAAACAACTAGACAGAGAGAGCGAGCTGCTGAAAATGAAGAAGAGCTTAGTCGAGTGAAACAGGAATTTGTTTCTCTCAAGTCATATGTTAGTAGTCTAATCACAGTGAGGGAAACTTTACTATCCTCAGAAAAGCAATTCCAAACTATTGAGAAGCTGTTTGAACGGCTAGTTGGAAAGACTACTCAATTAGAGGGTGAGAAAATGCAGAAAGAGGCTGAAGTTCAGAAACTTATGGAAGAGAATGTGAAGCTGAGTACTTTGCTTGACAAGAAAGAAGCTCAACTTCTGGCATTGAATGAACAATGTAAGATGATGGCTTTGAGCGCTTCAAACATGTAA

Protein sequence

>Msa1294820

MAAGEDIAMSGLKSLSGQSCDTWKEGMERNQSQVDVLQEKVNEIKASIQGSEEDSKKELEVLWRRVKTTATLLNYLKSKARIMAIPHLAHTSCGIKKLDGVGVVDKDGVPLSDWSRNVDLSSFDEEDAESWIGISRRQGLLDEQDAVYIGEILNSVQMVTDVMEALVKRVLLAESETALEKEKVSLGQEKIMLKSAQLENMSMKLEEMERFASGTNSILNDMRQRVADLMEETTRQRERAAENEEELSRVKQEFVSLKSYVSSLITVRETLLSSEKQFQTIEKLFERLVGKTTQLEGEKMQKEAEVQKLMEENVKLSTLLDKKEAQLLALNEQCKMMALSASNM*