Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375700 | XP_003602138.1 | 93.989 | 366 | 22 | 0 | 1 | 366 | 1 | 366 | 0.0 | 723 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375700 | sp|Q84VY3|STAD6_ARATH | 69.602 | 352 | 102 | 2 | 20 | 366 | 40 | 391 | 0.0 | 522 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375700 | G7J5N5 | 93.989 | 366 | 22 | 0 | 1 | 366 | 1 | 366 | 0.0 | 723 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0019600 | Msa0375700 | 0.807607 | 4.653191e-50 | -8.615850e-47 |
| Msa0124130 | Msa0375700 | 0.812251 | 4.656468e-51 | -8.615850e-47 |
| Msa0149140 | Msa0375700 | 0.817630 | 2.985437e-52 | -8.615850e-47 |
| Msa0212080 | Msa0375700 | 0.814659 | 1.376446e-51 | -8.615850e-47 |
| Msa0375680 | Msa0375700 | 0.805199 | 1.498117e-49 | -8.615850e-47 |
| Msa0375700 | Msa0406000 | 0.834062 | 3.724688e-56 | -8.615850e-47 |
| Msa0375700 | Msa0424330 | 0.804240 | 2.375315e-49 | -8.615850e-47 |
| Msa0375700 | Msa0424340 | 0.804214 | 2.405212e-49 | -8.615850e-47 |
| Msa0375700 | Msa0424350 | 0.824489 | 7.853164e-54 | -8.615850e-47 |
| Msa0375700 | Msa0451400 | 0.846228 | 2.477863e-59 | -8.615850e-47 |
| Msa0375700 | Msa0471250 | 0.832080 | 1.159315e-55 | -8.615850e-47 |
| Msa0375700 | Msa0492190 | 0.815166 | 1.062638e-51 | -8.615850e-47 |
| Msa0375700 | Msa0669840 | 0.811229 | 7.770755e-51 | -8.615850e-47 |
| Msa0375700 | Msa0739580 | 0.807367 | 5.232456e-50 | -8.615850e-47 |
| Msa0375700 | Msa0782360 | 0.804508 | 2.088728e-49 | -8.615850e-47 |
| Msa0375700 | Msa0831940 | 0.812487 | 4.136432e-51 | -8.615850e-47 |
| Msa0375700 | Msa0860280 | 0.809102 | 2.233496e-50 | -8.615850e-47 |
| Msa0375700 | Msa1171310 | 0.805548 | 1.265710e-49 | -8.615850e-47 |
| Msa0375700 | Msa1305510 | 0.826010 | 3.429963e-54 | -8.615850e-47 |
| Msa0375700 | Msa1378870 | 0.802705 | 4.942599e-49 | -8.615850e-47 |
| Msa0252630 | Msa0375700 | 0.814333 | 1.625294e-51 | -8.615850e-47 |
| Msa0359250 | Msa0375700 | 0.823766 | 1.160450e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375700 | MtrunA17_Chr3g0125991 | 93.989 | 366 | 22 | 0 | 1 | 366 | 1 | 366 | 0.0 | 723 |
| Msa0375700 | MtrunA17_Chr3g0126011 | 92.623 | 366 | 27 | 0 | 1 | 366 | 1 | 366 | 0.0 | 716 |
| Msa0375700 | MtrunA17_Chr3g0125781 | 80.055 | 366 | 69 | 1 | 5 | 366 | 4 | 369 | 0.0 | 613 |
| Msa0375700 | MtrunA17_Chr3g0125981 | 76.022 | 367 | 83 | 1 | 3 | 364 | 2 | 368 | 0.0 | 587 |
| Msa0375700 | MtrunA17_Chr1g0159321 | 73.521 | 355 | 88 | 2 | 18 | 366 | 36 | 390 | 0.0 | 553 |
| Msa0375700 | MtrunA17_Chr4g0045661 | 64.857 | 350 | 115 | 3 | 23 | 366 | 46 | 393 | 9.90e-171 | 481 |
| Msa0375700 | MtrunA17_Chr5g0406961 | 64.857 | 350 | 115 | 3 | 23 | 366 | 97 | 444 | 3.79e-170 | 481 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375700 | AT1G43800.1 | 69.602 | 352 | 102 | 2 | 20 | 366 | 40 | 391 | 0.0 | 522 |
| Msa0375700 | AT3G02630.1 | 65.089 | 338 | 114 | 2 | 29 | 364 | 59 | 394 | 1.14e-166 | 471 |
| Msa0375700 | AT5G16240.1 | 62.751 | 349 | 121 | 3 | 23 | 364 | 46 | 392 | 1.83e-164 | 466 |
| Msa0375700 | AT3G02610.2 | 59.946 | 372 | 129 | 5 | 14 | 366 | 43 | 413 | 4.52e-163 | 462 |
| Msa0375700 | AT3G02610.1 | 59.946 | 372 | 129 | 5 | 14 | 366 | 41 | 411 | 4.60e-163 | 462 |
| Msa0375700 | AT2G43710.2 | 63.717 | 339 | 120 | 2 | 29 | 366 | 65 | 401 | 2.40e-162 | 460 |
| Msa0375700 | AT2G43710.1 | 63.717 | 339 | 120 | 2 | 29 | 366 | 65 | 401 | 3.29e-162 | 460 |
| Msa0375700 | AT3G02620.2 | 60.165 | 364 | 133 | 4 | 14 | 366 | 44 | 406 | 3.33e-162 | 460 |
| Msa0375700 | AT3G02620.1 | 60.165 | 364 | 133 | 4 | 14 | 366 | 41 | 403 | 3.77e-162 | 460 |
| Msa0375700 | AT5G16230.1 | 62.281 | 342 | 124 | 3 | 29 | 366 | 61 | 401 | 1.70e-161 | 458 |
| Msa0375700 | AT5G16230.2 | 62.577 | 326 | 117 | 3 | 45 | 366 | 1 | 325 | 2.37e-155 | 440 |
| Msa0375700 | AT3G02620.3 | 62.195 | 328 | 117 | 3 | 45 | 366 | 1 | 327 | 9.98e-153 | 433 |
Find 94 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATGATTATCTTGTGGTTT+TGG | 0.271084 | 3_1:-75484752 | Msa0375700:CDS |
| AATCTTGTGCTGCATCATTT+TGG | 0.299305 | 3_1:+75483718 | None:intergenic |
| GAGACATTGAGTGTGTCTTT+TGG | 0.299881 | 3_1:+75484953 | None:intergenic |
| CCAACTTGTTTATCCATGTT+TGG | 0.336928 | 3_1:+75484692 | None:intergenic |
| CCCTCAGGGCCTGCACTTGA+TGG | 0.339047 | 3_1:+75484794 | None:intergenic |
| GTCTCACACCATGGGCTATA+TGG | 0.350432 | 3_1:-75484642 | Msa0375700:CDS |
| GTGGACTTGCACCTAGATTA+AGG | 0.352719 | 3_1:-75483502 | Msa0375700:CDS |
| TTTCTTGTCTTAATTTATAC+AGG | 0.357750 | 3_1:-75483355 | Msa0375700:three_prime_UTR |
| TTGTTCATGGTGTAGGATTT+GGG | 0.366166 | 3_1:-75483968 | Msa0375700:intron |
| GGGCTATATGGTCACGCTCT+TGG | 0.370720 | 3_1:-75484630 | Msa0375700:CDS |
| TGCCAGCTCCAATCAAATAT+TGG | 0.374430 | 3_1:+75484518 | None:intergenic |
| CTTGATTAGACGATGGAGAT+TGG | 0.392791 | 3_1:-75483576 | Msa0375700:CDS |
| TGTTCAAATCAATAGAGAAA+TGG | 0.393829 | 3_1:-75484915 | Msa0375700:CDS |
| GTTCAAATCAATAGAGAAAT+GGG | 0.399384 | 3_1:-75484914 | Msa0375700:CDS |
| AAGACTATCCAATATTTGAT+TGG | 0.400329 | 3_1:-75484526 | Msa0375700:CDS |
| TCTGCGGTGGCACAACGTAT+TGG | 0.420320 | 3_1:-75483638 | Msa0375700:CDS |
| GCTCAGCCGTTCGATCCCTC+AGG | 0.438311 | 3_1:+75484779 | None:intergenic |
| GTGTACACAAAACCCATGTA+TGG | 0.438769 | 3_1:+75483932 | None:intergenic |
| TCTTCTAGTTTCCTTAATCT+AGG | 0.439715 | 3_1:+75483491 | None:intergenic |
| GATGGAGTTGGCGACGAGAC+TGG | 0.447459 | 3_1:-75484670 | Msa0375700:CDS |
| GGTTGCCAGCATTCCTCCAC+AGG | 0.450432 | 3_1:+75484862 | None:intergenic |
| AGATCAACAACAAATTTACT+TGG | 0.459272 | 3_1:-75483445 | Msa0375700:CDS |
| ATCCAATATTTGATTGGAGC+TGG | 0.463614 | 3_1:-75484520 | Msa0375700:CDS |
| TACCGAAAACAACCCATACA+TGG | 0.467155 | 3_1:-75483945 | Msa0375700:CDS |
| CTCGTACTTGCACGCGTATG+CGG | 0.473722 | 3_1:-75483839 | Msa0375700:CDS |
| AGTGGATCCCACCGAGGCTA+TGG | 0.482931 | 3_1:-75483750 | Msa0375700:CDS |
| GGCTATGGCCACCATAGCCT+CGG | 0.489653 | 3_1:+75483739 | None:intergenic |
| TGGAGATTGGAGAAGCTTGA+GGG | 0.490817 | 3_1:-75483563 | Msa0375700:CDS |
| TTCACAAAGTGTGTTGCCAT+TGG | 0.492726 | 3_1:-75484890 | Msa0375700:CDS |
| TCTCTTTAGCCAACCTACCT+AGG | 0.494048 | 3_1:+75483870 | None:intergenic |
| AAAACCACAAGATAATCATC+TGG | 0.498146 | 3_1:+75484754 | None:intergenic |
| TTTATCCATGTTTGGTACGT+AGG | 0.501588 | 3_1:+75484700 | None:intergenic |
| TCGTACTTGCACGCGTATGC+GGG | 0.518633 | 3_1:-75483838 | Msa0375700:CDS |
| TCGGAAGGTAGTGATGAGTC+TGG | 0.523237 | 3_1:+75484826 | None:intergenic |
| GCTTCCAGATGATTATCTTG+TGG | 0.527931 | 3_1:-75484758 | Msa0375700:CDS |
| CCCGCTCACTTGATGCATGA+TGG | 0.529067 | 3_1:-75483689 | Msa0375700:CDS |
| CCAAACATGGATAAACAAGT+TGG | 0.530351 | 3_1:-75484692 | Msa0375700:CDS |
| CATTGCCTACGTACCAAACA+TGG | 0.538689 | 3_1:-75484705 | Msa0375700:CDS |
| TCAAACCTGTGGAGGAATGC+TGG | 0.540159 | 3_1:-75484867 | Msa0375700:CDS |
| CCATCAAGTGCAGGCCCTGA+GGG | 0.540496 | 3_1:-75484794 | Msa0375700:CDS |
| ATATTTGATTGGAGCTGGCA+TGG | 0.542464 | 3_1:-75484515 | Msa0375700:intron |
| CCATCATGCATCAAGTGAGC+GGG | 0.549039 | 3_1:+75483689 | None:intergenic |
| AAAACTTATCTCTATCTCTC+CGG | 0.550395 | 3_1:-75484574 | Msa0375700:CDS |
| TCCTCCACAGGTTTGACCAA+TGG | 0.550904 | 3_1:+75484874 | None:intergenic |
| AAATGTGGCTCGCTCTTGAA+AGG | 0.555847 | 3_1:+75483907 | None:intergenic |
| GCCTTTGGATAACATTGTAG+TGG | 0.556727 | 3_1:+75485000 | None:intergenic |
| ATAAACAAGTTGGATGGAGT+TGG | 0.559959 | 3_1:-75484682 | Msa0375700:CDS |
| GGATCCCACCGAGGCTATGG+TGG | 0.562827 | 3_1:-75483747 | Msa0375700:CDS |
| ATGGAGATTGGAGAAGCTTG+AGG | 0.564413 | 3_1:-75483564 | Msa0375700:CDS |
| CATGCACATATCAACTCTAC+CGG | 0.564833 | 3_1:+75484555 | None:intergenic |
| TGTGGAAAAGCTTCTAGAAG+TGG | 0.566245 | 3_1:-75483768 | Msa0375700:CDS |
| TGAGTTCATCCATCAAGTGC+AGG | 0.567672 | 3_1:-75484803 | Msa0375700:CDS |
| TATGGCCACCATAGCCTCGG+TGG | 0.570103 | 3_1:+75483742 | None:intergenic |
| CTCAGCCGTTCGATCCCTCA+GGG | 0.570692 | 3_1:+75484780 | None:intergenic |
| ACATGGATAAACAAGTTGGA+TGG | 0.572710 | 3_1:-75484688 | Msa0375700:CDS |
| AAAGTAAATTAAACATTGAG+AGG | 0.580090 | 3_1:+75483382 | None:intergenic |
| CTTGAGGGTTTGACAAGCGA+AGG | 0.581134 | 3_1:-75483548 | Msa0375700:CDS |
| CAACAATATGCACCCATGCA+TGG | 0.584323 | 3_1:-75485026 | Msa0375700:CDS |
| CGCATACGCGTGCAAGTACG+AGG | 0.584480 | 3_1:+75483840 | None:intergenic |
| ACACGGAAACCTAGGTAGGT+TGG | 0.591464 | 3_1:-75483879 | Msa0375700:CDS |
| TTTGTATCACACGGAAACCT+AGG | 0.594979 | 3_1:-75483887 | Msa0375700:CDS |
| GCAGGCCCTGAGGGATCGAA+CGG | 0.595946 | 3_1:-75484785 | Msa0375700:CDS |
| TGGTTCAAGTCTCACACCAT+GGG | 0.600203 | 3_1:-75484650 | Msa0375700:CDS |
| TAGAGTTCTTGATTAGACGA+TGG | 0.605110 | 3_1:-75483583 | Msa0375700:CDS |
| TCCATCATGCATCAAGTGAG+CGG | 0.608659 | 3_1:+75483688 | None:intergenic |
| CTGGTTCAAGTCTCACACCA+TGG | 0.612232 | 3_1:-75484651 | Msa0375700:CDS |
| ATTGTAGTGGAGTCCATGCA+TGG | 0.616264 | 3_1:+75485013 | None:intergenic |
| GTAAATTAAACATTGAGAGG+CGG | 0.618969 | 3_1:+75483385 | None:intergenic |
| TCCATCAAGTGCAGGCCCTG+AGG | 0.619025 | 3_1:-75484795 | Msa0375700:CDS |
| ATGGCCACCATAGCCTCGGT+GGG | 0.619166 | 3_1:+75483743 | None:intergenic |
| CGAGCCACATTTGTATCACA+CGG | 0.623581 | 3_1:-75483896 | Msa0375700:CDS |
| GAGCGTGACCATATAGCCCA+TGG | 0.625365 | 3_1:+75484634 | None:intergenic |
| ACCGAAAACAACCCATACAT+GGG | 0.628237 | 3_1:-75483944 | Msa0375700:CDS |
| TATCAAATTAACAATGACGA+TGG | 0.630822 | 3_1:-75485049 | Msa0375700:exon |
| GTTGCCATTGGTCAAACCTG+TGG | 0.631709 | 3_1:-75484878 | Msa0375700:CDS |
| GGTAGGTTGGCTAAAGAGAG+AGG | 0.635441 | 3_1:-75483866 | Msa0375700:CDS |
| TCCTCACATATGCATTCTCG+TGG | 0.635762 | 3_1:+75483792 | None:intergenic |
| TGTACACAAAACCCATGTAT+GGG | 0.636404 | 3_1:+75483933 | None:intergenic |
| TATCACACGGAAACCTAGGT+AGG | 0.636743 | 3_1:-75483883 | Msa0375700:CDS |
| TCCACTACAATGTTATCCAA+AGG | 0.639267 | 3_1:-75485001 | Msa0375700:CDS |
| CTCGTGGCGCTTCTCATCAG+CGG | 0.641370 | 3_1:+75483808 | None:intergenic |
| GAATGCATATGTGAGGATTG+TGG | 0.642224 | 3_1:-75483786 | Msa0375700:CDS |
| GAGTCTGGCAACAAATTATG+TGG | 0.649169 | 3_1:+75484841 | None:intergenic |
| CATGCACAAGAGTTCGTGTG+TGG | 0.649922 | 3_1:-75483521 | Msa0375700:CDS |
| GGCGGCTATAAAACTTCACA+AGG | 0.650138 | 3_1:+75483403 | None:intergenic |
| GCCATTGGTCAAACCTGTGG+AGG | 0.654988 | 3_1:-75484875 | Msa0375700:CDS |
| CACTTGATGGATGAACTCAT+CGG | 0.663477 | 3_1:+75484807 | None:intergenic |
| ACCGCTGAAGAAAATAGACA+TGG | 0.664992 | 3_1:-75484607 | Msa0375700:CDS |
| GCCACGAGAATGCATATGTG+AGG | 0.667191 | 3_1:-75483793 | Msa0375700:CDS |
| TGATGGATGAACTCATCGGA+AGG | 0.673548 | 3_1:+75484811 | None:intergenic |
| TTGTAGTGGAGTCCATGCAT+GGG | 0.697506 | 3_1:+75485014 | None:intergenic |
| GTTTCCGTGTGATACAAATG+TGG | 0.700218 | 3_1:+75483892 | None:intergenic |
| TCTAGAAGTGGATCCCACCG+AGG | 0.721401 | 3_1:-75483756 | Msa0375700:CDS |
| GGTTGGTAGCATGATCACTG+AGG | 0.753309 | 3_1:-75484731 | Msa0375700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTATGAAAAATGTTATT+TGG | + | chr3_1:75484339-75484358 | None:intergenic | 10.0% |
| !! | AATTTATGAAAAATGTTATT+TGG | + | chr3_1:75484339-75484358 | None:intergenic | 10.0% |
| !! | TTATTTAAACACACTAATAA+AGG | - | chr3_1:75483926-75483945 | Msa0375700:CDS | 15.0% |
| !! | TATTTAAACACACTAATAAA+GGG | - | chr3_1:75483927-75483946 | Msa0375700:CDS | 15.0% |
| !! | ATAAATTATTTGATTGTTCA+TGG | - | chr3_1:75484352-75484371 | Msa0375700:intron | 15.0% |
| !! | TTATTTAAACACACTAATAA+AGG | - | chr3_1:75483926-75483945 | Msa0375700:CDS | 15.0% |
| !! | TATTTAAACACACTAATAAA+GGG | - | chr3_1:75483927-75483946 | Msa0375700:CDS | 15.0% |
| !! | ATAAATTATTTGATTGTTCA+TGG | - | chr3_1:75484352-75484371 | Msa0375700:intron | 15.0% |
| !! | TGTAATAAATCATATGTGTA+TGG | + | chr3_1:75484123-75484142 | None:intergenic | 20.0% |
| !! | AAAGTAAATTAAACATTGAG+AGG | + | chr3_1:75484954-75484973 | None:intergenic | 20.0% |
| !! | TTTCTTGTCTTAATTTATAC+AGG | - | chr3_1:75484978-75484997 | Msa0375700:CDS | 20.0% |
| !! | TGTAATAAATCATATGTGTA+TGG | + | chr3_1:75484123-75484142 | None:intergenic | 20.0% |
| !! | AAAGTAAATTAAACATTGAG+AGG | + | chr3_1:75484954-75484973 | None:intergenic | 20.0% |
| !! | TTTCTTGTCTTAATTTATAC+AGG | - | chr3_1:75484978-75484997 | Msa0375700:CDS | 20.0% |
| ! | TATCAAATTAACAATGACGA+TGG | - | chr3_1:75483284-75483303 | Msa0375700:three_prime_UTR | 25.0% |
| ! | TGTTCAAATCAATAGAGAAA+TGG | - | chr3_1:75483418-75483437 | Msa0375700:CDS | 25.0% |
| ! | GTTCAAATCAATAGAGAAAT+GGG | - | chr3_1:75483419-75483438 | Msa0375700:CDS | 25.0% |
| ! | AAGACTATCCAATATTTGAT+TGG | - | chr3_1:75483807-75483826 | Msa0375700:CDS | 25.0% |
| ! | AAACTAACGAGAATAACAAA+TGG | - | chr3_1:75484021-75484040 | Msa0375700:intron | 25.0% |
| ! | ATGTGATAGATAGAATATGT+TGG | + | chr3_1:75484275-75484294 | None:intergenic | 25.0% |
| ! | AGATCAACAACAAATTTACT+TGG | - | chr3_1:75484888-75484907 | Msa0375700:CDS | 25.0% |
| ! | TATCAAATTAACAATGACGA+TGG | - | chr3_1:75483284-75483303 | Msa0375700:three_prime_UTR | 25.0% |
| ! | TGTTCAAATCAATAGAGAAA+TGG | - | chr3_1:75483418-75483437 | Msa0375700:CDS | 25.0% |
| ! | GTTCAAATCAATAGAGAAAT+GGG | - | chr3_1:75483419-75483438 | Msa0375700:CDS | 25.0% |
| ! | AAGACTATCCAATATTTGAT+TGG | - | chr3_1:75483807-75483826 | Msa0375700:CDS | 25.0% |
| ! | AAACTAACGAGAATAACAAA+TGG | - | chr3_1:75484021-75484040 | Msa0375700:intron | 25.0% |
| ! | ATGTGATAGATAGAATATGT+TGG | + | chr3_1:75484275-75484294 | None:intergenic | 25.0% |
| ! | AGATCAACAACAAATTTACT+TGG | - | chr3_1:75484888-75484907 | Msa0375700:CDS | 25.0% |
| !! | TTTTAGGAATGTTTTGGATG+GGG | + | chr3_1:75483358-75483377 | None:intergenic | 30.0% |
| !!! | GTTTTAGGAATGTTTTGGAT+GGG | + | chr3_1:75483359-75483378 | None:intergenic | 30.0% |
| ! | TTGAACACTTCTTTCTTTTC+AGG | + | chr3_1:75483405-75483424 | None:intergenic | 30.0% |
| AAAACCACAAGATAATCATC+TGG | + | chr3_1:75483582-75483601 | None:intergenic | 30.0% | |
| ! | AGATGATTATCTTGTGGTTT+TGG | - | chr3_1:75483581-75483600 | Msa0375700:CDS | 30.0% |
| AAAACTTATCTCTATCTCTC+CGG | - | chr3_1:75483759-75483778 | Msa0375700:CDS | 30.0% | |
| ! | TAAAAGACACCTTCATGTTT+TGG | - | chr3_1:75483898-75483917 | Msa0375700:CDS | 30.0% |
| TTAGTTTCAGGCAAATGTAT+TGG | + | chr3_1:75484008-75484027 | None:intergenic | 30.0% | |
| ! | TTGTTATTCTCGTTAGTTTC+AGG | + | chr3_1:75484020-75484039 | None:intergenic | 30.0% |
| GTCATTTGTAATACGTATGT+GGG | + | chr3_1:75484091-75484110 | None:intergenic | 30.0% | |
| ! | TGTCATTTGTAATACGTATG+TGG | + | chr3_1:75484092-75484111 | None:intergenic | 30.0% |
| AACGACTGTTAAAAAAACAG+AGG | + | chr3_1:75484212-75484231 | None:intergenic | 30.0% | |
| ! | TTCTATTTCTTTCTCCTTCA+AGG | - | chr3_1:75484300-75484319 | Msa0375700:intron | 30.0% |
| TATTTGATTGTTCATGGTGT+AGG | - | chr3_1:75484358-75484377 | Msa0375700:intron | 30.0% | |
| !! | TCTTCTAGTTTCCTTAATCT+AGG | + | chr3_1:75484845-75484864 | None:intergenic | 30.0% |
| GTAAATTAAACATTGAGAGG+CGG | + | chr3_1:75484951-75484970 | None:intergenic | 30.0% | |
| !! | TTTTAGGAATGTTTTGGATG+GGG | + | chr3_1:75483358-75483377 | None:intergenic | 30.0% |
| !!! | GTTTTAGGAATGTTTTGGAT+GGG | + | chr3_1:75483359-75483378 | None:intergenic | 30.0% |
| ! | TTGAACACTTCTTTCTTTTC+AGG | + | chr3_1:75483405-75483424 | None:intergenic | 30.0% |
| AAAACCACAAGATAATCATC+TGG | + | chr3_1:75483582-75483601 | None:intergenic | 30.0% | |
| ! | AGATGATTATCTTGTGGTTT+TGG | - | chr3_1:75483581-75483600 | Msa0375700:CDS | 30.0% |
| AAAACTTATCTCTATCTCTC+CGG | - | chr3_1:75483759-75483778 | Msa0375700:CDS | 30.0% | |
| ! | TAAAAGACACCTTCATGTTT+TGG | - | chr3_1:75483898-75483917 | Msa0375700:CDS | 30.0% |
| TTAGTTTCAGGCAAATGTAT+TGG | + | chr3_1:75484008-75484027 | None:intergenic | 30.0% | |
| ! | TTGTTATTCTCGTTAGTTTC+AGG | + | chr3_1:75484020-75484039 | None:intergenic | 30.0% |
| GTCATTTGTAATACGTATGT+GGG | + | chr3_1:75484091-75484110 | None:intergenic | 30.0% | |
| ! | TGTCATTTGTAATACGTATG+TGG | + | chr3_1:75484092-75484111 | None:intergenic | 30.0% |
| AACGACTGTTAAAAAAACAG+AGG | + | chr3_1:75484212-75484231 | None:intergenic | 30.0% | |
| ! | TTCTATTTCTTTCTCCTTCA+AGG | - | chr3_1:75484300-75484319 | Msa0375700:intron | 30.0% |
| TATTTGATTGTTCATGGTGT+AGG | - | chr3_1:75484358-75484377 | Msa0375700:intron | 30.0% | |
| !! | TCTTCTAGTTTCCTTAATCT+AGG | + | chr3_1:75484845-75484864 | None:intergenic | 30.0% |
| GTAAATTAAACATTGAGAGG+CGG | + | chr3_1:75484951-75484970 | None:intergenic | 30.0% | |
| TCCACTACAATGTTATCCAA+AGG | - | chr3_1:75483332-75483351 | Msa0375700:three_prime_UTR | 35.0% | |
| !!! | GGTTTTAGGAATGTTTTGGA+TGG | + | chr3_1:75483360-75483379 | None:intergenic | 35.0% |
| !!! | TTGGGGTTTTAGGAATGTTT+TGG | + | chr3_1:75483364-75483383 | None:intergenic | 35.0% |
| ! | AGACATTGAGTGTGTCTTTT+GGG | + | chr3_1:75483382-75483401 | None:intergenic | 35.0% |
| !!! | GATTATCTTGTGGTTTTGGT+TGG | - | chr3_1:75483585-75483604 | Msa0375700:CDS | 35.0% |
| TTTATCCATGTTTGGTACGT+AGG | + | chr3_1:75483636-75483655 | None:intergenic | 35.0% | |
| ! | CCAACTTGTTTATCCATGTT+TGG | + | chr3_1:75483644-75483663 | None:intergenic | 35.0% |
| CCAAACATGGATAAACAAGT+TGG | - | chr3_1:75483641-75483660 | Msa0375700:CDS | 35.0% | |
| ! | ACATGGATAAACAAGTTGGA+TGG | - | chr3_1:75483645-75483664 | Msa0375700:CDS | 35.0% |
| ! | ATAAACAAGTTGGATGGAGT+TGG | - | chr3_1:75483651-75483670 | Msa0375700:CDS | 35.0% |
| ! | TCCATGTCTATTTTCTTCAG+CGG | + | chr3_1:75483730-75483749 | None:intergenic | 35.0% |
| ATCCAATATTTGATTGGAGC+TGG | - | chr3_1:75483813-75483832 | Msa0375700:CDS | 35.0% | |
| ATAAACGAGCCAAAACATGA+AGG | + | chr3_1:75483910-75483929 | None:intergenic | 35.0% | |
| GACATATGCATAAACCTTGA+AGG | + | chr3_1:75484317-75484336 | None:intergenic | 35.0% | |
| ATTGTTCATGGTGTAGGATT+TGG | - | chr3_1:75484364-75484383 | Msa0375700:intron | 35.0% | |
| TTGTTCATGGTGTAGGATTT+GGG | - | chr3_1:75484365-75484384 | Msa0375700:intron | 35.0% | |
| TGTACACAAAACCCATGTAT+GGG | + | chr3_1:75484403-75484422 | None:intergenic | 35.0% | |
| ! | AATCTTGTGCTGCATCATTT+TGG | + | chr3_1:75484618-75484637 | None:intergenic | 35.0% |
| ! | AAAAATGATCGAAGAAGCGT+GGG | + | chr3_1:75484676-75484695 | None:intergenic | 35.0% |
| !! | CTTCTTCGATCATTTTTCTG+CGG | - | chr3_1:75484679-75484698 | Msa0375700:CDS | 35.0% |
| TAGAGTTCTTGATTAGACGA+TGG | - | chr3_1:75484750-75484769 | Msa0375700:CDS | 35.0% | |
| TCCACTACAATGTTATCCAA+AGG | - | chr3_1:75483332-75483351 | Msa0375700:three_prime_UTR | 35.0% | |
| !!! | GGTTTTAGGAATGTTTTGGA+TGG | + | chr3_1:75483360-75483379 | None:intergenic | 35.0% |
| !!! | TTGGGGTTTTAGGAATGTTT+TGG | + | chr3_1:75483364-75483383 | None:intergenic | 35.0% |
| ! | AGACATTGAGTGTGTCTTTT+GGG | + | chr3_1:75483382-75483401 | None:intergenic | 35.0% |
| !!! | GATTATCTTGTGGTTTTGGT+TGG | - | chr3_1:75483585-75483604 | Msa0375700:CDS | 35.0% |
| TTTATCCATGTTTGGTACGT+AGG | + | chr3_1:75483636-75483655 | None:intergenic | 35.0% | |
| ! | CCAACTTGTTTATCCATGTT+TGG | + | chr3_1:75483644-75483663 | None:intergenic | 35.0% |
| CCAAACATGGATAAACAAGT+TGG | - | chr3_1:75483641-75483660 | Msa0375700:CDS | 35.0% | |
| ! | ACATGGATAAACAAGTTGGA+TGG | - | chr3_1:75483645-75483664 | Msa0375700:CDS | 35.0% |
| ! | ATAAACAAGTTGGATGGAGT+TGG | - | chr3_1:75483651-75483670 | Msa0375700:CDS | 35.0% |
| ! | TCCATGTCTATTTTCTTCAG+CGG | + | chr3_1:75483730-75483749 | None:intergenic | 35.0% |
| ATCCAATATTTGATTGGAGC+TGG | - | chr3_1:75483813-75483832 | Msa0375700:CDS | 35.0% | |
| ATAAACGAGCCAAAACATGA+AGG | + | chr3_1:75483910-75483929 | None:intergenic | 35.0% | |
| GACATATGCATAAACCTTGA+AGG | + | chr3_1:75484317-75484336 | None:intergenic | 35.0% | |
| ATTGTTCATGGTGTAGGATT+TGG | - | chr3_1:75484364-75484383 | Msa0375700:intron | 35.0% | |
| TTGTTCATGGTGTAGGATTT+GGG | - | chr3_1:75484365-75484384 | Msa0375700:intron | 35.0% | |
| TGTACACAAAACCCATGTAT+GGG | + | chr3_1:75484403-75484422 | None:intergenic | 35.0% | |
| ! | AATCTTGTGCTGCATCATTT+TGG | + | chr3_1:75484618-75484637 | None:intergenic | 35.0% |
| ! | AAAAATGATCGAAGAAGCGT+GGG | + | chr3_1:75484676-75484695 | None:intergenic | 35.0% |
| !! | CTTCTTCGATCATTTTTCTG+CGG | - | chr3_1:75484679-75484698 | Msa0375700:CDS | 35.0% |
| TAGAGTTCTTGATTAGACGA+TGG | - | chr3_1:75484750-75484769 | Msa0375700:CDS | 35.0% | |
| GCCTTTGGATAACATTGTAG+TGG | + | chr3_1:75483336-75483355 | None:intergenic | 40.0% | |
| !!! | AGTGTGTCTTTTGGGGTTTT+AGG | + | chr3_1:75483374-75483393 | None:intergenic | 40.0% |
| ! | GACATTGAGTGTGTCTTTTG+GGG | + | chr3_1:75483381-75483400 | None:intergenic | 40.0% |
| ! | GAGACATTGAGTGTGTCTTT+TGG | + | chr3_1:75483383-75483402 | None:intergenic | 40.0% |
| TTCACAAAGTGTGTTGCCAT+TGG | - | chr3_1:75483443-75483462 | Msa0375700:CDS | 40.0% | |
| GAGTCTGGCAACAAATTATG+TGG | + | chr3_1:75483495-75483514 | None:intergenic | 40.0% | |
| ! | CACTTGATGGATGAACTCAT+CGG | + | chr3_1:75483529-75483548 | None:intergenic | 40.0% |
| GCTTCCAGATGATTATCTTG+TGG | - | chr3_1:75483575-75483594 | Msa0375700:CDS | 40.0% | |
| ACCGCTGAAGAAAATAGACA+TGG | - | chr3_1:75483726-75483745 | Msa0375700:CDS | 40.0% | |
| CATGCACATATCAACTCTAC+CGG | + | chr3_1:75483781-75483800 | None:intergenic | 40.0% | |
| TGCCAGCTCCAATCAAATAT+TGG | + | chr3_1:75483818-75483837 | None:intergenic | 40.0% | |
| ATATTTGATTGGAGCTGGCA+TGG | - | chr3_1:75483818-75483837 | Msa0375700:CDS | 40.0% | |
| TACCGAAAACAACCCATACA+TGG | - | chr3_1:75484388-75484407 | Msa0375700:intron | 40.0% | |
| ACCGAAAACAACCCATACAT+GGG | - | chr3_1:75484389-75484408 | Msa0375700:intron | 40.0% | |
| !! | ACCCATGTATGGGTTGTTTT+CGG | + | chr3_1:75484393-75484412 | None:intergenic | 40.0% |
| GTGTACACAAAACCCATGTA+TGG | + | chr3_1:75484404-75484423 | None:intergenic | 40.0% | |
| GTTTCCGTGTGATACAAATG+TGG | + | chr3_1:75484444-75484463 | None:intergenic | 40.0% | |
| TTTGTATCACACGGAAACCT+AGG | - | chr3_1:75484446-75484465 | Msa0375700:intron | 40.0% | |
| GAATGCATATGTGAGGATTG+TGG | - | chr3_1:75484547-75484566 | Msa0375700:CDS | 40.0% | |
| ! | TGTGGAAAAGCTTCTAGAAG+TGG | - | chr3_1:75484565-75484584 | Msa0375700:CDS | 40.0% |
| GAAAAATGATCGAAGAAGCG+TGG | + | chr3_1:75484677-75484696 | None:intergenic | 40.0% | |
| CTTGATTAGACGATGGAGAT+TGG | - | chr3_1:75484757-75484776 | Msa0375700:CDS | 40.0% | |
| GCCTTTGGATAACATTGTAG+TGG | + | chr3_1:75483336-75483355 | None:intergenic | 40.0% | |
| !!! | AGTGTGTCTTTTGGGGTTTT+AGG | + | chr3_1:75483374-75483393 | None:intergenic | 40.0% |
| ! | GACATTGAGTGTGTCTTTTG+GGG | + | chr3_1:75483381-75483400 | None:intergenic | 40.0% |
| ! | GAGACATTGAGTGTGTCTTT+TGG | + | chr3_1:75483383-75483402 | None:intergenic | 40.0% |
| TTCACAAAGTGTGTTGCCAT+TGG | - | chr3_1:75483443-75483462 | Msa0375700:CDS | 40.0% | |
| GAGTCTGGCAACAAATTATG+TGG | + | chr3_1:75483495-75483514 | None:intergenic | 40.0% | |
| ! | CACTTGATGGATGAACTCAT+CGG | + | chr3_1:75483529-75483548 | None:intergenic | 40.0% |
| GCTTCCAGATGATTATCTTG+TGG | - | chr3_1:75483575-75483594 | Msa0375700:CDS | 40.0% | |
| ACCGCTGAAGAAAATAGACA+TGG | - | chr3_1:75483726-75483745 | Msa0375700:CDS | 40.0% | |
| CATGCACATATCAACTCTAC+CGG | + | chr3_1:75483781-75483800 | None:intergenic | 40.0% | |
| TGCCAGCTCCAATCAAATAT+TGG | + | chr3_1:75483818-75483837 | None:intergenic | 40.0% | |
| ATATTTGATTGGAGCTGGCA+TGG | - | chr3_1:75483818-75483837 | Msa0375700:CDS | 40.0% | |
| TACCGAAAACAACCCATACA+TGG | - | chr3_1:75484388-75484407 | Msa0375700:intron | 40.0% | |
| ACCGAAAACAACCCATACAT+GGG | - | chr3_1:75484389-75484408 | Msa0375700:intron | 40.0% | |
| !! | ACCCATGTATGGGTTGTTTT+CGG | + | chr3_1:75484393-75484412 | None:intergenic | 40.0% |
| GTGTACACAAAACCCATGTA+TGG | + | chr3_1:75484404-75484423 | None:intergenic | 40.0% | |
| GTTTCCGTGTGATACAAATG+TGG | + | chr3_1:75484444-75484463 | None:intergenic | 40.0% | |
| TTTGTATCACACGGAAACCT+AGG | - | chr3_1:75484446-75484465 | Msa0375700:intron | 40.0% | |
| GAATGCATATGTGAGGATTG+TGG | - | chr3_1:75484547-75484566 | Msa0375700:CDS | 40.0% | |
| ! | TGTGGAAAAGCTTCTAGAAG+TGG | - | chr3_1:75484565-75484584 | Msa0375700:CDS | 40.0% |
| GAAAAATGATCGAAGAAGCG+TGG | + | chr3_1:75484677-75484696 | None:intergenic | 40.0% | |
| CTTGATTAGACGATGGAGAT+TGG | - | chr3_1:75484757-75484776 | Msa0375700:CDS | 40.0% | |
| CAACAATATGCACCCATGCA+TGG | - | chr3_1:75483307-75483326 | Msa0375700:three_prime_UTR | 45.0% | |
| ! | TTGTAGTGGAGTCCATGCAT+GGG | + | chr3_1:75483322-75483341 | None:intergenic | 45.0% |
| ! | ATTGTAGTGGAGTCCATGCA+TGG | + | chr3_1:75483323-75483342 | None:intergenic | 45.0% |
| !! | AATGTTTTGGATGGGGCCTT+TGG | + | chr3_1:75483351-75483370 | None:intergenic | 45.0% |
| ! | TGATGGATGAACTCATCGGA+AGG | + | chr3_1:75483525-75483544 | None:intergenic | 45.0% |
| TGAGTTCATCCATCAAGTGC+AGG | - | chr3_1:75483530-75483549 | Msa0375700:CDS | 45.0% | |
| CATTGCCTACGTACCAAACA+TGG | - | chr3_1:75483628-75483647 | Msa0375700:CDS | 45.0% | |
| TGGTTCAAGTCTCACACCAT+GGG | - | chr3_1:75483683-75483702 | Msa0375700:CDS | 45.0% | |
| AAATGTGGCTCGCTCTTGAA+AGG | + | chr3_1:75484429-75484448 | None:intergenic | 45.0% | |
| CGAGCCACATTTGTATCACA+CGG | - | chr3_1:75484437-75484456 | Msa0375700:intron | 45.0% | |
| TATCACACGGAAACCTAGGT+AGG | - | chr3_1:75484450-75484469 | Msa0375700:intron | 45.0% | |
| TCTCTTTAGCCAACCTACCT+AGG | + | chr3_1:75484466-75484485 | None:intergenic | 45.0% | |
| TCCTCACATATGCATTCTCG+TGG | + | chr3_1:75484544-75484563 | None:intergenic | 45.0% | |
| !!! | GTGCTGCATCATTTTGGCTA+TGG | + | chr3_1:75484612-75484631 | None:intergenic | 45.0% |
| TCCATCATGCATCAAGTGAG+CGG | + | chr3_1:75484648-75484667 | None:intergenic | 45.0% | |
| !! | CTTCGATCATTTTTCTGCGG+TGG | - | chr3_1:75484682-75484701 | Msa0375700:CDS | 45.0% |
| ATGGAGATTGGAGAAGCTTG+AGG | - | chr3_1:75484769-75484788 | Msa0375700:CDS | 45.0% | |
| TGGAGATTGGAGAAGCTTGA+GGG | - | chr3_1:75484770-75484789 | Msa0375700:CDS | 45.0% | |
| GTGGACTTGCACCTAGATTA+AGG | - | chr3_1:75484831-75484850 | Msa0375700:CDS | 45.0% | |
| GGCGGCTATAAAACTTCACA+AGG | + | chr3_1:75484933-75484952 | None:intergenic | 45.0% | |
| CAACAATATGCACCCATGCA+TGG | - | chr3_1:75483307-75483326 | Msa0375700:three_prime_UTR | 45.0% | |
| ! | TTGTAGTGGAGTCCATGCAT+GGG | + | chr3_1:75483322-75483341 | None:intergenic | 45.0% |
| ! | ATTGTAGTGGAGTCCATGCA+TGG | + | chr3_1:75483323-75483342 | None:intergenic | 45.0% |
| !! | AATGTTTTGGATGGGGCCTT+TGG | + | chr3_1:75483351-75483370 | None:intergenic | 45.0% |
| ! | TGATGGATGAACTCATCGGA+AGG | + | chr3_1:75483525-75483544 | None:intergenic | 45.0% |
| TGAGTTCATCCATCAAGTGC+AGG | - | chr3_1:75483530-75483549 | Msa0375700:CDS | 45.0% | |
| CATTGCCTACGTACCAAACA+TGG | - | chr3_1:75483628-75483647 | Msa0375700:CDS | 45.0% | |
| TGGTTCAAGTCTCACACCAT+GGG | - | chr3_1:75483683-75483702 | Msa0375700:CDS | 45.0% | |
| AAATGTGGCTCGCTCTTGAA+AGG | + | chr3_1:75484429-75484448 | None:intergenic | 45.0% | |
| CGAGCCACATTTGTATCACA+CGG | - | chr3_1:75484437-75484456 | Msa0375700:intron | 45.0% | |
| TATCACACGGAAACCTAGGT+AGG | - | chr3_1:75484450-75484469 | Msa0375700:intron | 45.0% | |
| TCTCTTTAGCCAACCTACCT+AGG | + | chr3_1:75484466-75484485 | None:intergenic | 45.0% | |
| TCCTCACATATGCATTCTCG+TGG | + | chr3_1:75484544-75484563 | None:intergenic | 45.0% | |
| !!! | GTGCTGCATCATTTTGGCTA+TGG | + | chr3_1:75484612-75484631 | None:intergenic | 45.0% |
| TCCATCATGCATCAAGTGAG+CGG | + | chr3_1:75484648-75484667 | None:intergenic | 45.0% | |
| !! | CTTCGATCATTTTTCTGCGG+TGG | - | chr3_1:75484682-75484701 | Msa0375700:CDS | 45.0% |
| ATGGAGATTGGAGAAGCTTG+AGG | - | chr3_1:75484769-75484788 | Msa0375700:CDS | 45.0% | |
| TGGAGATTGGAGAAGCTTGA+GGG | - | chr3_1:75484770-75484789 | Msa0375700:CDS | 45.0% | |
| GTGGACTTGCACCTAGATTA+AGG | - | chr3_1:75484831-75484850 | Msa0375700:CDS | 45.0% | |
| GGCGGCTATAAAACTTCACA+AGG | + | chr3_1:75484933-75484952 | None:intergenic | 45.0% | |
| GTTGCCATTGGTCAAACCTG+TGG | - | chr3_1:75483455-75483474 | Msa0375700:CDS | 50.0% | |
| TCCTCCACAGGTTTGACCAA+TGG | + | chr3_1:75483462-75483481 | None:intergenic | 50.0% | |
| TCAAACCTGTGGAGGAATGC+TGG | - | chr3_1:75483466-75483485 | Msa0375700:CDS | 50.0% | |
| TCGGAAGGTAGTGATGAGTC+TGG | + | chr3_1:75483510-75483529 | None:intergenic | 50.0% | |
| !! | GGTTGGTAGCATGATCACTG+AGG | - | chr3_1:75483602-75483621 | Msa0375700:CDS | 50.0% |
| CTGGTTCAAGTCTCACACCA+TGG | - | chr3_1:75483682-75483701 | Msa0375700:CDS | 50.0% | |
| ! | GTCTCACACCATGGGCTATA+TGG | - | chr3_1:75483691-75483710 | Msa0375700:CDS | 50.0% |
| ACACGGAAACCTAGGTAGGT+TGG | - | chr3_1:75484454-75484473 | Msa0375700:intron | 50.0% | |
| ! | GGTAGGTTGGCTAAAGAGAG+AGG | - | chr3_1:75484467-75484486 | Msa0375700:intron | 50.0% |
| GCCACGAGAATGCATATGTG+AGG | - | chr3_1:75484540-75484559 | Msa0375700:CDS | 50.0% | |
| CCATCATGCATCAAGTGAGC+GGG | + | chr3_1:75484647-75484666 | None:intergenic | 50.0% | |
| CTTGAGGGTTTGACAAGCGA+AGG | - | chr3_1:75484785-75484804 | Msa0375700:CDS | 50.0% | |
| CATGCACAAGAGTTCGTGTG+TGG | - | chr3_1:75484812-75484831 | Msa0375700:CDS | 50.0% | |
| GTTGCCATTGGTCAAACCTG+TGG | - | chr3_1:75483455-75483474 | Msa0375700:CDS | 50.0% | |
| TCCTCCACAGGTTTGACCAA+TGG | + | chr3_1:75483462-75483481 | None:intergenic | 50.0% | |
| TCAAACCTGTGGAGGAATGC+TGG | - | chr3_1:75483466-75483485 | Msa0375700:CDS | 50.0% | |
| TCGGAAGGTAGTGATGAGTC+TGG | + | chr3_1:75483510-75483529 | None:intergenic | 50.0% | |
| !! | GGTTGGTAGCATGATCACTG+AGG | - | chr3_1:75483602-75483621 | Msa0375700:CDS | 50.0% |
| CTGGTTCAAGTCTCACACCA+TGG | - | chr3_1:75483682-75483701 | Msa0375700:CDS | 50.0% | |
| ! | GTCTCACACCATGGGCTATA+TGG | - | chr3_1:75483691-75483710 | Msa0375700:CDS | 50.0% |
| ACACGGAAACCTAGGTAGGT+TGG | - | chr3_1:75484454-75484473 | Msa0375700:intron | 50.0% | |
| ! | GGTAGGTTGGCTAAAGAGAG+AGG | - | chr3_1:75484467-75484486 | Msa0375700:intron | 50.0% |
| GCCACGAGAATGCATATGTG+AGG | - | chr3_1:75484540-75484559 | Msa0375700:CDS | 50.0% | |
| CCATCATGCATCAAGTGAGC+GGG | + | chr3_1:75484647-75484666 | None:intergenic | 50.0% | |
| CTTGAGGGTTTGACAAGCGA+AGG | - | chr3_1:75484785-75484804 | Msa0375700:CDS | 50.0% | |
| CATGCACAAGAGTTCGTGTG+TGG | - | chr3_1:75484812-75484831 | Msa0375700:CDS | 50.0% | |
| GCCATTGGTCAAACCTGTGG+AGG | - | chr3_1:75483458-75483477 | Msa0375700:CDS | 55.0% | |
| GAGCGTGACCATATAGCCCA+TGG | + | chr3_1:75483702-75483721 | None:intergenic | 55.0% | |
| GGGCTATATGGTCACGCTCT+TGG | - | chr3_1:75483703-75483722 | Msa0375700:CDS | 55.0% | |
| CTCGTACTTGCACGCGTATG+CGG | - | chr3_1:75484494-75484513 | Msa0375700:intron | 55.0% | |
| TCGTACTTGCACGCGTATGC+GGG | - | chr3_1:75484495-75484514 | Msa0375700:intron | 55.0% | |
| TCTAGAAGTGGATCCCACCG+AGG | - | chr3_1:75484577-75484596 | Msa0375700:CDS | 55.0% | |
| CCCGCTCACTTGATGCATGA+TGG | - | chr3_1:75484644-75484663 | Msa0375700:CDS | 55.0% | |
| TCTGCGGTGGCACAACGTAT+TGG | - | chr3_1:75484695-75484714 | Msa0375700:CDS | 55.0% | |
| GCCATTGGTCAAACCTGTGG+AGG | - | chr3_1:75483458-75483477 | Msa0375700:CDS | 55.0% | |
| GAGCGTGACCATATAGCCCA+TGG | + | chr3_1:75483702-75483721 | None:intergenic | 55.0% | |
| GGGCTATATGGTCACGCTCT+TGG | - | chr3_1:75483703-75483722 | Msa0375700:CDS | 55.0% | |
| CTCGTACTTGCACGCGTATG+CGG | - | chr3_1:75484494-75484513 | Msa0375700:intron | 55.0% | |
| TCGTACTTGCACGCGTATGC+GGG | - | chr3_1:75484495-75484514 | Msa0375700:intron | 55.0% | |
| TCTAGAAGTGGATCCCACCG+AGG | - | chr3_1:75484577-75484596 | Msa0375700:CDS | 55.0% | |
| CCCGCTCACTTGATGCATGA+TGG | - | chr3_1:75484644-75484663 | Msa0375700:CDS | 55.0% | |
| TCTGCGGTGGCACAACGTAT+TGG | - | chr3_1:75484695-75484714 | Msa0375700:CDS | 55.0% | |
| GGTTGCCAGCATTCCTCCAC+AGG | + | chr3_1:75483474-75483493 | None:intergenic | 60.0% | |
| TCCATCAAGTGCAGGCCCTG+AGG | - | chr3_1:75483538-75483557 | Msa0375700:CDS | 60.0% | |
| CCATCAAGTGCAGGCCCTGA+GGG | - | chr3_1:75483539-75483558 | Msa0375700:CDS | 60.0% | |
| CTCAGCCGTTCGATCCCTCA+GGG | + | chr3_1:75483556-75483575 | None:intergenic | 60.0% | |
| GATGGAGTTGGCGACGAGAC+TGG | - | chr3_1:75483663-75483682 | Msa0375700:CDS | 60.0% | |
| CGCATACGCGTGCAAGTACG+AGG | + | chr3_1:75484496-75484515 | None:intergenic | 60.0% | |
| CTCGTGGCGCTTCTCATCAG+CGG | + | chr3_1:75484528-75484547 | None:intergenic | 60.0% | |
| AGTGGATCCCACCGAGGCTA+TGG | - | chr3_1:75484583-75484602 | Msa0375700:CDS | 60.0% | |
| ATGGCCACCATAGCCTCGGT+GGG | + | chr3_1:75484593-75484612 | None:intergenic | 60.0% | |
| TATGGCCACCATAGCCTCGG+TGG | + | chr3_1:75484594-75484613 | None:intergenic | 60.0% | |
| GGCTATGGCCACCATAGCCT+CGG | + | chr3_1:75484597-75484616 | None:intergenic | 60.0% | |
| GGTTGCCAGCATTCCTCCAC+AGG | + | chr3_1:75483474-75483493 | None:intergenic | 60.0% | |
| TCCATCAAGTGCAGGCCCTG+AGG | - | chr3_1:75483538-75483557 | Msa0375700:CDS | 60.0% | |
| CCATCAAGTGCAGGCCCTGA+GGG | - | chr3_1:75483539-75483558 | Msa0375700:CDS | 60.0% | |
| CTCAGCCGTTCGATCCCTCA+GGG | + | chr3_1:75483556-75483575 | None:intergenic | 60.0% | |
| GATGGAGTTGGCGACGAGAC+TGG | - | chr3_1:75483663-75483682 | Msa0375700:CDS | 60.0% | |
| CGCATACGCGTGCAAGTACG+AGG | + | chr3_1:75484496-75484515 | None:intergenic | 60.0% | |
| CTCGTGGCGCTTCTCATCAG+CGG | + | chr3_1:75484528-75484547 | None:intergenic | 60.0% | |
| AGTGGATCCCACCGAGGCTA+TGG | - | chr3_1:75484583-75484602 | Msa0375700:CDS | 60.0% | |
| ATGGCCACCATAGCCTCGGT+GGG | + | chr3_1:75484593-75484612 | None:intergenic | 60.0% | |
| TATGGCCACCATAGCCTCGG+TGG | + | chr3_1:75484594-75484613 | None:intergenic | 60.0% | |
| GGCTATGGCCACCATAGCCT+CGG | + | chr3_1:75484597-75484616 | None:intergenic | 60.0% | |
| CCCTCAGGGCCTGCACTTGA+TGG | + | chr3_1:75483542-75483561 | None:intergenic | 65.0% | |
| GCAGGCCCTGAGGGATCGAA+CGG | - | chr3_1:75483548-75483567 | Msa0375700:CDS | 65.0% | |
| GCTCAGCCGTTCGATCCCTC+AGG | + | chr3_1:75483557-75483576 | None:intergenic | 65.0% | |
| GGATCCCACCGAGGCTATGG+TGG | - | chr3_1:75484586-75484605 | Msa0375700:CDS | 65.0% | |
| CCCTCAGGGCCTGCACTTGA+TGG | + | chr3_1:75483542-75483561 | None:intergenic | 65.0% | |
| GCAGGCCCTGAGGGATCGAA+CGG | - | chr3_1:75483548-75483567 | Msa0375700:CDS | 65.0% | |
| GCTCAGCCGTTCGATCCCTC+AGG | + | chr3_1:75483557-75483576 | None:intergenic | 65.0% | |
| GGATCCCACCGAGGCTATGG+TGG | - | chr3_1:75484586-75484605 | Msa0375700:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 75483279 | 75485076 | 75483279 | ID=Msa0375700;Name=Msa0375700 |
| chr3_1 | mRNA | 75483279 | 75485076 | 75483279 | ID=Msa0375700-mRNA-1;Parent=Msa0375700;Name=Msa0375700-mRNA-1;_AED=0.03;_eAED=0.03;_QI=18|1|1|1|1|1|2|139|366 |
| chr3_1 | exon | 75483279 | 75483975 | 75483279 | ID=Msa0375700-mRNA-1:exon:17691;Parent=Msa0375700-mRNA-1 |
| chr3_1 | exon | 75484516 | 75485076 | 75484516 | ID=Msa0375700-mRNA-1:exon:17690;Parent=Msa0375700-mRNA-1 |
| chr3_1 | five_prime_UTR | 75485059 | 75485076 | 75485059 | ID=Msa0375700-mRNA-1:five_prime_utr;Parent=Msa0375700-mRNA-1 |
| chr3_1 | CDS | 75484516 | 75485058 | 75484516 | ID=Msa0375700-mRNA-1:cds;Parent=Msa0375700-mRNA-1 |
| chr3_1 | CDS | 75483418 | 75483975 | 75483418 | ID=Msa0375700-mRNA-1:cds;Parent=Msa0375700-mRNA-1 |
| chr3_1 | three_prime_UTR | 75483279 | 75483417 | 75483279 | ID=Msa0375700-mRNA-1:three_prime_utr;Parent=Msa0375700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
