AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0831940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0831940 MtrunA17_Chr5g0394111 84.062 709 54 4 13 720 1 651 0.0 1197
Msa0831940 MtrunA17_Chr2g0322731 52.833 706 301 13 23 715 79 765 0.0 698
Msa0831940 MtrunA17_Chr4g0024351 52.347 703 294 13 32 715 49 729 0.0 686
Msa0831940 MtrunA17_Chr8g0350321 43.127 742 372 13 12 715 77 806 0.0 579
Msa0831940 MtrunA17_Chr7g0246631 43.539 712 366 13 29 715 74 774 0.0 566
Msa0831940 MtrunA17_Chr1g0203671 39.463 707 384 15 43 715 93 789 3.31e-173 516
Msa0831940 MtrunA17_Chr2g0331581 38.856 682 367 14 49 715 143 789 2.40e-158 478
Msa0831940 MtrunA17_Chr6g0472471 38.536 724 380 17 37 715 62 765 7.56e-156 470
Msa0831940 MtrunA17_Chr6g0481041 36.453 716 389 16 45 715 29 723 9.93e-149 451
Msa0831940 MtrunA17_Chr5g0410711 35.450 756 435 19 1 715 35 778 4.59e-144 441
Msa0831940 MtrunA17_Chr7g0224451 35.491 479 236 15 45 509 16 435 7.47e-83 270
Msa0831940 MtrunA17_Chr2g0292731 34.470 528 307 14 210 716 40 549 1.62e-82 272
Msa0831940 MtrunA17_Chr2g0292741 33.719 519 322 12 208 716 30 536 4.67e-78 260
Msa0831940 MtrunA17_Chr2g0292761 33.742 489 289 11 234 716 82 541 2.54e-69 236
Msa0831940 MtrunA17_Chr7g0224491 37.888 322 154 9 411 715 1 293 2.60e-56 194
Msa0831940 MtrunA17_Chr7g0224481 34.840 376 181 12 45 408 16 339 1.31e-54 191
Msa0831940 MtrunA17_Chr2g0319671 43.678 174 87 2 283 456 103 265 2.18e-41 153
Msa0831940 MtrunA17_Chr2g0319681 29.004 231 151 4 492 715 1 225 2.23e-26 108
Msa0831940 MtrunA17_Chr1g0205981 38.119 202 99 7 100 289 1 188 2.73e-26 107
Msa0831940 MtrunA17_Chr2g0319701 32.456 228 137 7 496 715 5 223 6.74e-26 107
Msa0831940 MtrunA17_Chr2g0319691 45.045 111 54 1 344 454 1 104 6.33e-25 101
Msa0831940 MtrunA17_Chr5g0419821 36.879 141 79 3 34 164 14 154 3.05e-24 100
Msa0831940 MtrunA17_Chr2g0304191 35.385 130 83 1 239 367 1 130 5.23e-15 72.4
Msa0831940 MtrunA17_Chr7g0224461 40.496 121 52 3 608 715 1 114 3.63e-14 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0831940 AT4G04890.2 54.902 714 285 12 23 715 38 735 0.0 764
Msa0831940 AT4G04890.1 54.902 714 285 12 23 715 38 735 0.0 764
Msa0831940 AT4G21750.2 53.825 732 287 13 27 719 42 761 0.0 764
Msa0831940 AT4G21750.1 53.825 732 287 13 27 719 42 761 0.0 764
Msa0831940 AT4G21750.3 53.825 732 287 13 27 719 42 761 0.0 764
Msa0831940 AT4G21750.4 53.825 732 287 13 27 719 42 761 0.0 764
Msa0831940 AT1G05230.8 50.361 693 314 9 29 715 48 716 0.0 677
Msa0831940 AT1G05230.4 50.361 693 314 9 29 715 48 716 0.0 677
Msa0831940 AT1G05230.9 50.361 693 314 9 29 715 48 716 0.0 677
Msa0831940 AT1G05230.10 50.361 693 314 9 29 715 48 716 0.0 677
Msa0831940 AT1G05230.7 50.361 693 314 9 29 715 48 716 0.0 677
Msa0831940 AT1G05230.11 50.361 693 314 9 29 715 48 716 0.0 677
Msa0831940 AT1G05230.2 50.361 693 314 9 29 715 48 716 0.0 677
Msa0831940 AT1G05230.6 50.361 693 314 9 29 715 48 716 0.0 677
Msa0831940 AT1G05230.5 50.361 693 314 9 29 715 48 716 0.0 677
Msa0831940 AT1G05230.1 50.361 693 314 9 29 715 48 716 0.0 677
Msa0831940 AT1G05230.3 50.361 693 312 10 29 715 48 714 0.0 671
Msa0831940 AT4G00730.1 42.877 716 369 14 20 715 103 798 0.0 545
Msa0831940 AT1G05230.12 48.785 576 268 8 29 598 48 602 0.0 542
Msa0831940 AT3G61150.1 39.842 758 379 17 8 715 73 803 1.48e-179 533
Msa0831940 AT2G32370.1 41.424 688 355 17 41 712 62 717 9.22e-163 487
Msa0831940 AT5G52170.3 38.770 699 359 14 29 715 37 678 2.63e-158 474
Msa0831940 AT5G52170.1 38.770 699 359 14 29 715 37 678 2.63e-158 474
Msa0831940 AT5G52170.2 38.571 700 364 14 29 715 37 683 1.17e-156 470
Msa0831940 AT1G73360.1 38.062 712 370 17 45 715 32 713 1.58e-146 445
Msa0831940 AT1G79840.3 37.916 691 367 17 41 715 40 684 2.37e-146 443
Msa0831940 AT1G79840.6 37.916 691 367 17 41 715 40 684 2.37e-146 443
Msa0831940 AT1G79840.1 37.916 691 367 17 41 715 98 742 1.75e-145 443
Msa0831940 AT1G79840.2 37.916 691 367 17 41 715 127 771 3.14e-145 443
Msa0831940 AT1G17920.2 38.372 688 372 13 49 715 25 681 2.31e-144 438
Msa0831940 AT1G17920.1 38.372 688 372 13 49 715 25 681 2.31e-144 438
Msa0831940 AT5G46880.3 34.958 718 415 19 36 715 103 806 1.16e-126 396
Msa0831940 AT5G46880.1 34.958 718 415 19 36 715 103 806 1.16e-126 396
Msa0831940 AT5G46880.2 34.958 718 415 19 36 715 103 806 1.16e-126 396
Msa0831940 AT1G79840.4 38.053 565 298 14 41 595 98 620 1.52e-120 375
Msa0831940 AT3G03260.1 33.813 695 405 19 46 712 24 691 3.51e-112 355
Msa0831940 AT4G17710.1 34.682 692 372 20 37 716 81 704 8.58e-112 354
Msa0831940 AT4G25530.1 33.826 677 405 18 46 715 42 682 3.88e-108 344
Msa0831940 AT4G00730.2 40.215 465 248 9 20 469 103 552 4.75e-102 325
Msa0831940 AT5G17320.1 31.989 719 428 24 37 715 18 715 4.96e-95 310
Msa0831940 AT1G79840.5 38.952 439 219 12 41 470 98 496 8.43e-89 288
Msa0831940 AT1G34650.1 31.197 702 430 18 50 715 21 705 2.96e-88 292
Msa0831940 AT3G03260.2 32.836 536 325 15 46 567 24 538 1.91e-79 264
Msa0831940 AT5G07260.1 26.221 553 330 22 111 656 10 491 1.76e-29 124
Msa0831940 AT5G07260.2 26.134 551 328 21 111 656 10 486 5.91e-29 122

Find 202 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTCACGCTCTGCTGATTT+TGG 0.190379 5_4:+5010388 Msa0831940:CDS
GTTAATTCTGGACTTGCTTT+TGG 0.195569 5_4:+5011582 Msa0831940:CDS
AACTGCATCCAGATGGAATA+TGG 0.242195 5_4:+5011244 Msa0831940:CDS
TCTCTTCTCTGAGCATCATT+AGG 0.259035 5_4:-5009616 None:intergenic
CCAACCAACGTCCCAGAAAA+AGG 0.260396 5_4:+5009406 Msa0831940:CDS
TCAATCTTTCTCTTATAATA+AGG 0.273417 5_4:+5007756 Msa0831940:five_prime_UTR
ATTTCAAATGGTCGTGATTC+TGG 0.286392 5_4:+5012195 Msa0831940:CDS
ACGCCAGCTTGAAAGGTATA+TGG 0.288034 5_4:+5010306 Msa0831940:intron
TGGGACGTTGGTTGGGTTGC+TGG 0.298706 5_4:-5009398 None:intergenic
TATAAACCTCTAGTTAATTC+TGG 0.304749 5_4:+5011570 Msa0831940:CDS
TGGCTCCTCCGTACAGATTA+AGG 0.307811 5_4:+5010471 Msa0831940:CDS
ACCCAACGCAAATCAAGTTT+TGG 0.325446 5_4:+5009662 Msa0831940:CDS
AACACCCTCCTTGGAGGAAC+TGG 0.338188 5_4:-5011995 None:intergenic
GAGAATTGCACTGATGTAAC+TGG 0.338466 5_4:+5012381 Msa0831940:CDS
AAGACCTTAGTGAGACCATT+TGG 0.340133 5_4:-5011378 None:intergenic
CGTCTTACTCTGCTTCCTTC+CGG 0.342730 5_4:+5012474 Msa0831940:CDS
ACAACCTCCGGTCCGTTTCC+AGG 0.348649 5_4:-5011884 None:intergenic
GTTTACAGTATCTCACAAAA+TGG 0.349194 5_4:-5011224 None:intergenic
CTCTTCTCTGAGCATCATTA+GGG 0.354899 5_4:-5009615 None:intergenic
CCAGATCCGACATTCATAAT+TGG 0.363963 5_4:-5012537 None:intergenic
GAGAATCTCAGTGACATAAT+TGG 0.367087 5_4:-5010593 None:intergenic
GACTTGAGTCGCCGCCATTC+AGG 0.368603 5_4:-5012452 None:intergenic
TTATATAGGTTCAAACTGAT+AGG 0.374562 5_4:+5009942 Msa0831940:intron
ACAGCAACAAATTGATGAAA+TGG 0.376687 5_4:+5009446 Msa0831940:CDS
CTAATTTCATTACCTTCATA+AGG 0.378634 5_4:+5012704 Msa0831940:exon
AAGGAGCCTCCACGTTCATT+TGG 0.384232 5_4:-5009365 None:intergenic
ACTTACAGTGATACGAAATA+AGG 0.385266 5_4:-5012229 None:intergenic
ACCAAACTGGCTAGGACATA+TGG 0.389902 5_4:+5010550 Msa0831940:CDS
ATTGTTGGATGATGTTATAT+TGG 0.393371 5_4:-5010353 None:intergenic
GAGATGAAGTTAATAGATAC+AGG 0.396482 5_4:+5010005 Msa0831940:CDS
GTTGTAGAGCTTGCTGTTGT+TGG 0.396518 5_4:+5010514 Msa0831940:CDS
TCCACATGCAAGGCTAGCTC+TGG 0.401494 5_4:+5012605 Msa0831940:CDS
CGGCGGTATAGTTCATGAAT+TGG 0.401952 5_4:+5012167 Msa0831940:CDS
CCAATTATGAATGTCGGATC+TGG 0.406349 5_4:+5012537 Msa0831940:CDS
ACACTTGAAGTCCTTTCAAC+TGG 0.406882 5_4:+5011012 Msa0831940:CDS
AAGTATTTCCCAAGGGCTAA+TGG 0.411663 5_4:+5010634 Msa0831940:CDS
AAAGCTAAGATGACAAGCTT+GGG 0.419594 5_4:+5013064 Msa0831940:three_prime_UTR
AGAGAAGAGAGCTGAGCCTT+CGG 0.419978 5_4:+5009629 Msa0831940:CDS
GGTTGCTGGTCATCACTTGA+AGG 0.429873 5_4:-5009384 None:intergenic
AGCTTTAATCCCAATGTGTT+GGG 0.429957 5_4:-5010658 None:intergenic
CTCTGAGCATCATTAGGGTT+AGG 0.434546 5_4:-5009610 None:intergenic
AGACCTTAGTGAGACCATTT+GGG 0.436761 5_4:-5011377 None:intergenic
GCATTTGTTATACACCCATC+TGG 0.446371 5_4:-5012510 None:intergenic
GACTGGAGAATGCTCTCTTA+AGG 0.451510 5_4:+5010107 Msa0831940:CDS
TCCATATGTCCTAGCCAGTT+TGG 0.452823 5_4:-5010551 None:intergenic
CGCCAGCTTGAAAGGTATAT+GGG 0.454469 5_4:+5010307 Msa0831940:intron
TTCAGGATTTCATGCATTGT+AGG 0.456298 5_4:-5012435 None:intergenic
GCCACTACCCATATTCCATC+TGG 0.457430 5_4:-5011252 None:intergenic
AGAAAATCAAACACCCTCCT+TGG 0.457924 5_4:-5012004 None:intergenic
ACCAAAACTTGATTTGCGTT+GGG 0.459278 5_4:-5009663 None:intergenic
TAATGAAATTAGATGCCATT+AGG 0.460205 5_4:-5012693 None:intergenic
TGACATTTCCCCAGCGGTAG+TGG 0.460740 5_4:-5010065 None:intergenic
GGAGAGGCTTTCACTGTTGG+TGG 0.462617 5_4:+5010451 Msa0831940:CDS
GCAAGAACATGTATCAGAAT+AGG 0.464753 5_4:+5009316 Msa0831940:CDS
AAAACTGCAGTGATGCCTAA+TGG 0.465524 5_4:+5012678 Msa0831940:CDS
GGCTCCTCCGTACAGATTAA+GGG 0.467368 5_4:+5010472 Msa0831940:CDS
GCTAGCTTTAGTACAAGTAT+TGG 0.471031 5_4:+5011830 Msa0831940:CDS
TATAAGAGAAAGATTGATCA+TGG 0.471524 5_4:-5007750 None:intergenic
GTAGGAGAGGCTTTCACTGT+TGG 0.472074 5_4:+5010448 Msa0831940:CDS
TGTTGGGACCATTAGCCCTT+GGG 0.476328 5_4:-5010642 None:intergenic
TTGCTGTGTGTGGCGGCGAT+AGG 0.479639 5_4:-5009430 None:intergenic
ATTTGATTAATACCTTATGA+AGG 0.480091 5_4:-5012716 None:intergenic
ATGAGGATATCTACAAGATC+AGG 0.482347 5_4:-5010721 None:intergenic
GAATTGGCTCACATTTCAAA+TGG 0.482575 5_4:+5012183 Msa0831940:CDS
GCTAATGGTCCCAACACATT+GGG 0.483917 5_4:+5010649 Msa0831940:CDS
ACATTGGGATTAAAGCTTGA+GGG 0.484683 5_4:+5010664 Msa0831940:CDS
AACCAAAACTTGATTTGCGT+TGG 0.487544 5_4:-5009664 None:intergenic
AGAGCTTGCTGTTGTTGGAA+TGG 0.487738 5_4:+5010519 Msa0831940:CDS
GTTCTTCTACAACACATGCT+TGG 0.487768 5_4:+5011852 Msa0831940:CDS
AAACGGCCACCAACGTTCCA+CGG 0.489293 5_4:+5011658 Msa0831940:CDS
AATGGCTGAACTGACCAAAC+TGG 0.494651 5_4:+5010537 Msa0831940:CDS
TGACGATCAGCAGCTAAGAC+TGG 0.495757 5_4:+5010090 Msa0831940:CDS
AAGCTTTAATCCCAATGTGT+TGG 0.498683 5_4:-5010659 None:intergenic
TTTGGCTTCCAGTTCCTCCA+AGG 0.503857 5_4:+5011987 Msa0831940:CDS
CCACTGTTAACACTTTGATC+AGG 0.506278 5_4:+5012637 Msa0831940:CDS
CAAAGCTAAGATGACAAGCT+TGG 0.507346 5_4:+5013063 Msa0831940:three_prime_UTR
GTCATGACCATTACAACCTC+CGG 0.508691 5_4:-5011896 None:intergenic
AAATGTAGAAGTTGATGATC+AGG 0.509315 5_4:+5011533 Msa0831940:CDS
TATATAGGTTCAAACTGATA+GGG 0.512992 5_4:+5009943 Msa0831940:intron
GCTTCCAGTTCCTCCAAGGA+GGG 0.515083 5_4:+5011991 Msa0831940:CDS
GAGAGCTGAGCCTTCGGACC+GGG 0.516878 5_4:+5009635 Msa0831940:CDS
AGAGAGCTGAGCCTTCGGAC+CGG 0.520073 5_4:+5009634 Msa0831940:CDS
ACTGCATCCAGATGGAATAT+GGG 0.521116 5_4:+5011245 Msa0831940:CDS
GAAGTCCTTTCAACTGGAGT+GGG 0.523037 5_4:+5011018 Msa0831940:CDS
ATTGAATCTTGCGGAAAGGT+TGG 0.528383 5_4:+5011805 Msa0831940:CDS
AACGGCCACCAACGTTCCAC+GGG 0.530317 5_4:+5011659 Msa0831940:CDS
GGGTCTTAATGAGAAGCAAA+GGG 0.531547 5_4:+5010492 Msa0831940:CDS
AACAACATGAGTGCTATTGT+TGG 0.531872 5_4:-5010368 None:intergenic
TATGTCACTGAGATTCTCAA+TGG 0.532052 5_4:+5010598 Msa0831940:CDS
TGGACAAAGGTACCTGGAAA+CGG 0.533786 5_4:+5011872 Msa0831940:CDS
AAATCAAACACCCTCCTTGG+AGG 0.534430 5_4:-5012001 None:intergenic
AGGGTCTTAATGAGAAGCAA+AGG 0.534523 5_4:+5010491 Msa0831940:CDS
TGCATTGTAGGTATTTGCAC+AGG 0.535629 5_4:-5012423 None:intergenic
ATTAGTACTTACCACTTGCA+AGG 0.535950 5_4:-5011058 None:intergenic
GATTTGCGTTGGGTCTAACC+CGG 0.536665 5_4:-5009653 None:intergenic
TTGATTGAGACACTCCCAAA+TGG 0.537043 5_4:+5011363 Msa0831940:CDS
GAATGCTCTCTTAAGGAAAG+AGG 0.538971 5_4:+5010114 Msa0831940:CDS
CGAGTAGGAACATGTGGGGA+GGG 0.539762 5_4:-5011195 None:intergenic
GTGTTGGGACCATTAGCCCT+TGG 0.540053 5_4:-5010643 None:intergenic
TGTGGAAGTTCCACTACCGC+TGG 0.541115 5_4:+5010055 Msa0831940:CDS
GGCTAATGGTCCCAACACAT+TGG 0.544303 5_4:+5010648 Msa0831940:CDS
CATGCTTGGACAAAGGTACC+TGG 0.544698 5_4:+5011866 Msa0831940:CDS
GCACTTAGCACAACACTGAC+GGG 0.544921 5_4:-5011953 None:intergenic
TGAAGTCCTTTCAACTGGAG+TGG 0.545864 5_4:+5011017 Msa0831940:CDS
AAACGGACCGGAGGTTGTAA+TGG 0.547300 5_4:+5011889 Msa0831940:CDS
CATCAATTTGTTGCTGTGTG+TGG 0.548832 5_4:-5009440 None:intergenic
ATTATGAATGTCGGATCTGG+AGG 0.550174 5_4:+5012540 Msa0831940:CDS
GGCTTCCAGTTCCTCCAAGG+AGG 0.551888 5_4:+5011990 Msa0831940:CDS
TACCTCCCACTCCAGTTGAA+AGG 0.552733 5_4:-5011023 None:intergenic
GATGGGTGTATAACAAATGC+AGG 0.554349 5_4:+5012513 Msa0831940:CDS
TACTGTAAACTGCATCCAGA+TGG 0.557363 5_4:+5011237 Msa0831940:CDS
TACAACACATGCTTGGACAA+AGG 0.558020 5_4:+5011859 Msa0831940:CDS
CACATTGGGATTAAAGCTTG+AGG 0.558168 5_4:+5010663 Msa0831940:CDS
TTGGGTCTAACCCGGTCCGA+AGG 0.562141 5_4:-5009645 None:intergenic
CAGTGGGATATTCTCTCCGC+CGG 0.564704 5_4:+5012147 Msa0831940:intron
CTGAACTGACCAAACTGGCT+AGG 0.569467 5_4:+5010542 Msa0831940:CDS
GAAAAGTATATTGAATCTTG+CGG 0.569980 5_4:+5011796 Msa0831940:CDS
ACAAGTCAATGAACGCACCT+TGG 0.570948 5_4:+5013096 Msa0831940:three_prime_UTR
GTGGAAGTTCCACTACCGCT+GGG 0.571737 5_4:+5010056 Msa0831940:CDS
ATATTGGCACGGGAATCTGC+AGG 0.571975 5_4:-5010337 None:intergenic
AATTGGTGGGAAGCCAAAGA+GGG 0.573774 5_4:-5010576 None:intergenic
GTTACCACATGCAACGTATG+TGG 0.576120 5_4:+5010037 Msa0831940:CDS
AGCACTTAGCACAACACTGA+CGG 0.577940 5_4:-5011954 None:intergenic
AATCTCAGTGACATAATTGG+TGG 0.578666 5_4:-5010590 None:intergenic
GGAGTTGCTGGTGGTAACAA+TGG 0.581415 5_4:+5010409 Msa0831940:CDS
ATTAAGACCCTTAATCTGTA+CGG 0.581991 5_4:-5010479 None:intergenic
TGATCTTGTAGATATCCTCA+TGG 0.582197 5_4:+5010723 Msa0831940:CDS
GGATGATGTTATATTGGCAC+GGG 0.584066 5_4:-5010347 None:intergenic
GCAGGACCAATTATGAATGT+CGG 0.584913 5_4:+5012531 Msa0831940:CDS
ACAACCAGAGGGTCTTCTGT+TGG 0.585992 5_4:-5011340 None:intergenic
ATGTTCCCGTGGAACGTTGG+TGG 0.586357 5_4:-5011664 None:intergenic
AGAACCAACAGAAGACCCTC+TGG 0.588399 5_4:+5011336 Msa0831940:CDS
AACGTTCCACGGGAACATCA+TGG 0.588608 5_4:+5011669 Msa0831940:CDS
GAGTAGGAACATGTGGGGAG+GGG 0.590439 5_4:-5011194 None:intergenic
TTGATTCTATTCCACATGCA+AGG 0.590966 5_4:+5012595 Msa0831940:CDS
GAACAGGCGCACTTCACTCA+AGG 0.594716 5_4:+5009690 Msa0831940:CDS
CAATTTGTTGCTGTGTGTGG+CGG 0.596318 5_4:-5009437 None:intergenic
GTATATTGAATCTTGCGGAA+AGG 0.597531 5_4:+5011801 Msa0831940:CDS
GTCCTTTCAACTGGAGTGGG+AGG 0.597763 5_4:+5011021 Msa0831940:CDS
CCACATGCAAGGCTAGCTCT+GGG 0.598313 5_4:+5012606 Msa0831940:CDS
AATACATGAAGTATTTCCCA+AGG 0.599100 5_4:+5010626 Msa0831940:CDS
ATCTCAGTGACATAATTGGT+GGG 0.600678 5_4:-5010589 None:intergenic
TGATCAGGAACACTGTGGAA+AGG 0.601274 5_4:+5012652 Msa0831940:CDS
AAAGGTACCTGGAAACGGAC+CGG 0.603908 5_4:+5011877 Msa0831940:CDS
CACTGAGATTCTCAATGGAG+AGG 0.605470 5_4:+5010603 Msa0831940:CDS
TGTTGCATTTAACAGATGCA+AGG 0.605749 5_4:-5011283 None:intergenic
ACAATGCATGAAATCCTGAA+TGG 0.606726 5_4:+5012438 Msa0831940:CDS
CAATTCATGAACTATACCGC+CGG 0.609707 5_4:-5012166 None:intergenic
ACTCCCAAATGGTCTCACTA+AGG 0.610306 5_4:+5011374 Msa0831940:CDS
TAATTGGTGGGAAGCCAAAG+AGG 0.613117 5_4:-5010577 None:intergenic
GGAGCACACCACCGCATGGT+AGG 0.614498 5_4:+5010430 Msa0831940:CDS
ACGAGTAGGAACATGTGGGG+AGG 0.617756 5_4:-5011196 None:intergenic
ACAGTGAGATTGACTCCGGA+GGG 0.618021 5_4:+5011770 Msa0831940:intron
TGTAGATATCCTCATGGATG+TGG 0.622507 5_4:+5010729 Msa0831940:CDS
ATGTACAGTGAGATTGACTC+CGG 0.623201 5_4:+5011766 Msa0831940:intron
GCAAGTCCAGAATTAACTAG+AGG 0.625489 5_4:-5011576 None:intergenic
AGATGAAGTTAATAGATACA+GGG 0.626082 5_4:+5010006 Msa0831940:CDS
TCCAGATGGAATATGGGTAG+TGG 0.628113 5_4:+5011251 Msa0831940:CDS
ACACCACCGCATGGTAGGAG+AGG 0.632377 5_4:+5010435 Msa0831940:CDS
CCCAGAGCTAGCCTTGCATG+TGG 0.637254 5_4:-5012606 None:intergenic
AAGCTAAGATGACAAGCTTG+GGG 0.643388 5_4:+5013065 Msa0831940:three_prime_UTR
TGGGATATTCTCTCCGCCGG+CGG 0.644828 5_4:+5012150 Msa0831940:CDS
ATTGGTGGGAAGCCAAAGAG+GGG 0.648389 5_4:-5010575 None:intergenic
TGGATGATGTTATATTGGCA+CGG 0.648641 5_4:-5010348 None:intergenic
TTATGAATGTCGGATCTGGA+GGG 0.649910 5_4:+5012541 Msa0831940:CDS
AAGCCTCTCCTACCATGCGG+TGG 0.649944 5_4:-5010438 None:intergenic
CAATGGAGCACACCACCGCA+TGG 0.649965 5_4:+5010426 Msa0831940:CDS
AAGAGAAAGATTGATCATGG+TGG 0.650524 5_4:-5007747 None:intergenic
AGAATTGCACTGATGTAACT+GGG 0.652163 5_4:+5012382 Msa0831940:CDS
ATGATGTTCCCGTGGAACGT+TGG 0.653734 5_4:-5011667 None:intergenic
TACAGTGAGATTGACTCCGG+AGG 0.655167 5_4:+5011769 Msa0831940:intron
TATATACCATGATGTTCCCG+TGG 0.660275 5_4:-5011675 None:intergenic
CTACGATGGAGCCTTGCAAG+TGG 0.661414 5_4:+5011047 Msa0831940:CDS
TGTCTCAATCAAACAACCAG+AGG 0.663405 5_4:-5011352 None:intergenic
TTTGACGAGTAGGAACATGT+GGG 0.667790 5_4:-5011200 None:intergenic
GTCTCAATCAAACAACCAGA+GGG 0.671321 5_4:-5011351 None:intergenic
ATGAAGTTAATAGATACAGG+GGG 0.672309 5_4:+5010008 Msa0831940:CDS
AAATTCAGAGCAGAGTGATG+TGG 0.672413 5_4:+5012347 Msa0831940:CDS
GGAGTGGGAGGTAACTACGA+TGG 0.675779 5_4:+5011033 Msa0831940:CDS
GATGAAGTTAATAGATACAG+GGG 0.679151 5_4:+5010007 Msa0831940:CDS
TAACAAAGAAACAAGCAACA+TGG 0.679618 5_4:+5009269 Msa0831940:exon
TGAGGGTTCGAAAGAATCCG+TGG 0.680929 5_4:+5010681 Msa0831940:CDS
ACTTCCACATACGTTGCATG+TGG 0.681040 5_4:-5010041 None:intergenic
TGGAAGTTCCACTACCGCTG+GGG 0.684408 5_4:+5010057 Msa0831940:CDS
ATGCATGAAATCCTGAATGG+CGG 0.684425 5_4:+5012441 Msa0831940:CDS
TGTAGAAGTTGATGATCAGG+TGG 0.686691 5_4:+5011536 Msa0831940:CDS
AGAAGCAAACCAAATGAACG+TGG 0.686882 5_4:+5009356 Msa0831940:CDS
TTGACGAGTAGGAACATGTG+GGG 0.689635 5_4:-5011199 None:intergenic
TTGGTGGGAAGCCAAAGAGG+GGG 0.695051 5_4:-5010574 None:intergenic
ATACATGAAGTATTTCCCAA+GGG 0.695847 5_4:+5010627 Msa0831940:CDS
AGCATTAATCATGACCACCA+CGG 0.701180 5_4:-5010698 None:intergenic
GGTACCTGGAAACGGACCGG+AGG 0.704720 5_4:+5011880 Msa0831940:CDS
CACTTTGATCAGGAACACTG+TGG 0.708628 5_4:+5012647 Msa0831940:CDS
AGCAAACCAAATGAACGTGG+AGG 0.709887 5_4:+5009359 Msa0831940:CDS
AAGACCCTTAATCTGTACGG+AGG 0.717527 5_4:-5010476 None:intergenic
TTCATGAACTATACCGCCGG+CGG 0.721861 5_4:-5012163 None:intergenic
GTCATGTGACATTTCCCCAG+CGG 0.729104 5_4:-5010071 None:intergenic
AATGACTCACCACATCCATG+AGG 0.740230 5_4:-5010738 None:intergenic
GGGTTCGAAAGAATCCGTGG+TGG 0.741743 5_4:+5010684 Msa0831940:CDS
TGAAGTTAATAGATACAGGG+GGG 0.744765 5_4:+5010009 Msa0831940:CDS
TGAAAGCCTCTCCTACCATG+CGG 0.748941 5_4:-5010441 None:intergenic
CCTGATCAAAGTGTTAACAG+TGG 0.772385 5_4:-5012637 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTAAAAAAAAAA+AGG - chr5_4:5011702-5011721 None:intergenic 0.0%
!!! TTTAACATTATTTTTGTTTT+TGG - chr5_4:5008603-5008622 None:intergenic 10.0%
!!! TTTGTTCATTTTTTTTATAA+AGG - chr5_4:5008797-5008816 None:intergenic 10.0%
!! TCAGATAAAATATATAAAAA+TGG - chr5_4:5009483-5009502 None:intergenic 10.0%
!!! TTTATTTTAAAAAAGAACAT+TGG + chr5_4:5010881-5010900 Msa0831940:intron 10.0%
!! AATTTAATAATATAAATGGA+GGG - chr5_4:5010938-5010957 None:intergenic 10.0%
!! AAATTTAATAATATAAATGG+AGG - chr5_4:5010939-5010958 None:intergenic 10.0%
!! TTAATAATAGTTTATAATGT+TGG + chr5_4:5011430-5011449 Msa0831940:intron 10.0%
!! AAGTTATGTAAAATTAAAAT+TGG + chr5_4:5012248-5012267 Msa0831940:intron 10.0%
!!! ATTTATGTATATGTATTTTG+TGG - chr5_4:5008673-5008692 None:intergenic 15.0%
!! AAAATACATATACATAAATG+TGG + chr5_4:5008674-5008693 Msa0831940:intron 15.0%
!! AAATACATATACATAAATGT+GGG + chr5_4:5008675-5008694 Msa0831940:intron 15.0%
!! ATTATCAATTTAATCTATCA+TGG - chr5_4:5009000-5009019 None:intergenic 15.0%
!!! TTTGAAATATCAATTAATGT+AGG - chr5_4:5009147-5009166 None:intergenic 15.0%
!! AAACATTAATGCAAATAATA+AGG - chr5_4:5010792-5010811 None:intergenic 15.0%
!!! ATTAATATTATTTTAGGTGA+AGG - chr5_4:5011415-5011434 None:intergenic 15.0%
!! ATATTTAATTGAATTTACAG+TGG + chr5_4:5012130-5012149 Msa0831940:intron 15.0%
!! TATTTAATTGAATTTACAGT+GGG + chr5_4:5012131-5012150 Msa0831940:intron 15.0%
!!! AATCAAAATATGCTTATTTT+TGG + chr5_4:5012925-5012944 Msa0831940:intron 15.0%
!! TTCAATGAATAAAACAAATA+TGG - chr5_4:5012991-5013010 None:intergenic 15.0%
!!! AAGTATTTTGTTTTTTCAAT+AGG - chr5_4:5013179-5013198 None:intergenic 15.0%
!! TCAATCTTTCTCTTATAATA+AGG + chr5_4:5007756-5007775 Msa0831940:five_prime_UTR 20.0%
!! AATGACATATTCATACAAAA+GGG - chr5_4:5007784-5007803 None:intergenic 20.0%
!! AAATGACATATTCATACAAA+AGG - chr5_4:5007785-5007804 None:intergenic 20.0%
!!! GTCACAATTTTTTTTGATAT+TGG + chr5_4:5007931-5007950 Msa0831940:intron 20.0%
!!! TCACTTATTTCATTCTTTTT+TGG + chr5_4:5008104-5008123 Msa0831940:intron 20.0%
!!! CACTTATTTCATTCTTTTTT+GGG + chr5_4:5008105-5008124 Msa0831940:intron 20.0%
!! GAAATAGTAAGAAAAAAAAG+CGG + chr5_4:5008229-5008248 Msa0831940:intron 20.0%
!!! TTAAACTTGATTACCTTTTT+AGG + chr5_4:5008346-5008365 Msa0831940:intron 20.0%
!! TAAAAAAAAGCTACCTAAAA+AGG - chr5_4:5008362-5008381 None:intergenic 20.0%
!! AATACATATACATAAATGTG+GGG + chr5_4:5008676-5008695 Msa0831940:intron 20.0%
!!! AGTGAAAGAATGAAATTTTT+TGG + chr5_4:5008701-5008720 Msa0831940:intron 20.0%
!!! ATAAAGGTCAATTTTTTATC+CGG - chr5_4:5008781-5008800 None:intergenic 20.0%
!!! TGGTATTAATTTTTTGAACT+TGG + chr5_4:5009556-5009575 Msa0831940:intron 20.0%
!!! TATGTAAGAGTTGATAATAA+TGG - chr5_4:5009831-5009850 None:intergenic 20.0%
!!! AAAAGAAGCATTTAATTAAG+AGG - chr5_4:5009887-5009906 None:intergenic 20.0%
!!! CTTAATTAAATGCTTCTTTT+CGG + chr5_4:5009887-5009906 Msa0831940:intron 20.0%
!!! CGTAATATTCTAAAAATACT+TGG - chr5_4:5010855-5010874 None:intergenic 20.0%
!!! AAATTTGTTTTCAGAATCAA+TGG + chr5_4:5010953-5010972 Msa0831940:intron 20.0%
!!! AATGTTGGATTATTTTAATG+TGG + chr5_4:5011445-5011464 Msa0831940:intron 20.0%
!! ATTTGATTAATACCTTATGA+AGG - chr5_4:5012719-5012738 None:intergenic 20.0%
!! CTAACTTCATTACTTAAAAA+AGG + chr5_4:5012790-5012809 Msa0831940:intron 20.0%
!!! AAATAATCTATTTTGAACTC+AGG - chr5_4:5012884-5012903 None:intergenic 20.0%
!! AACAAATATGGTAATCATTA+AGG - chr5_4:5012979-5012998 None:intergenic 20.0%
! TATAAGAGAAAGATTGATCA+TGG - chr5_4:5007753-5007772 None:intergenic 25.0%
! ATTGTAGAATAATGTTCTCT+CGG - chr5_4:5008324-5008343 None:intergenic 25.0%
! ATACATATACATAAATGTGG+GGG + chr5_4:5008677-5008696 Msa0831940:intron 25.0%
!!! AATGAAATTTTTTGGCCTTT+TGG + chr5_4:5008709-5008728 Msa0831940:intron 25.0%
!!! ATGAAATTTTTTGGCCTTTT+GGG + chr5_4:5008710-5008729 Msa0831940:intron 25.0%
! ATGTTCTATAAATACCCAAA+AGG - chr5_4:5008727-5008746 None:intergenic 25.0%
!!! ACTTGCTCTATATTTTTGTT+TGG + chr5_4:5009536-5009555 Msa0831940:intron 25.0%
! GACAAAAAAATACATGTAGT+TGG - chr5_4:5009725-5009744 None:intergenic 25.0%
! TTATATAGGTTCAAACTGAT+AGG + chr5_4:5009942-5009961 Msa0831940:intron 25.0%
! TATATAGGTTCAAACTGATA+GGG + chr5_4:5009943-5009962 Msa0831940:intron 25.0%
! AGATGAAGTTAATAGATACA+GGG + chr5_4:5010006-5010025 Msa0831940:CDS 25.0%
! ATTGTTGGATGATGTTATAT+TGG - chr5_4:5010356-5010375 None:intergenic 25.0%
! GCATTAATGTTTCAAAAACT+TGG + chr5_4:5010800-5010819 Msa0831940:intron 25.0%
!!! GTTGTCTTGTTTTTTTAAAC+AGG + chr5_4:5011497-5011516 Msa0831940:intron 25.0%
!!! GTTTTTTTAAACAGGTTACA+TGG + chr5_4:5011505-5011524 Msa0831940:intron 25.0%
! TATAAACCTCTAGTTAATTC+TGG + chr5_4:5011570-5011589 Msa0831940:CDS 25.0%
!!! TGATCGTCTTGTTTTTAAAA+CGG + chr5_4:5011641-5011660 Msa0831940:CDS 25.0%
!! GAAAAGTATATTGAATCTTG+CGG + chr5_4:5011796-5011815 Msa0831940:CDS 25.0%
! TAATGAAATTAGATGCCATT+AGG - chr5_4:5012696-5012715 None:intergenic 25.0%
! CTAATTTCATTACCTTCATA+AGG + chr5_4:5012704-5012723 Msa0831940:exon 25.0%
! ATGGTAATCATTAAGGAATT+TGG - chr5_4:5012972-5012991 None:intergenic 25.0%
!!! ATTTTGAAAGAACTTAGGTT+CGG + chr5_4:5013140-5013159 Msa0831940:three_prime_UTR 25.0%
TCATTTCCTGAAATAGTGTT+AGG + chr5_4:5007799-5007818 Msa0831940:intron 30.0%
AAGACAAATACAAAGTAGAG+TGG - chr5_4:5008076-5008095 None:intergenic 30.0%
ACATAATGATACACTCATTC+AGG - chr5_4:5008146-5008165 None:intergenic 30.0%
TTCTTACTATTTCACAGCTT+TGG - chr5_4:5008222-5008241 None:intergenic 30.0%
AGATATAGTTATCACCTGTT+TGG - chr5_4:5008278-5008297 None:intergenic 30.0%
CTAACCAAGGTTATCAAAAT+CGG + chr5_4:5008427-5008446 Msa0831940:intron 30.0%
TAACCAAGGTTATCAAAATC+GGG + chr5_4:5008428-5008447 Msa0831940:intron 30.0%
AAAATCGCAATCAAAATCGA+AGG + chr5_4:5008494-5008513 Msa0831940:intron 30.0%
! AAATCGAAGGATTTTACTCA+AGG + chr5_4:5008507-5008526 Msa0831940:intron 30.0%
TAAAATCGCAATCAAAATCG+AGG + chr5_4:5008493-5008512 Msa0831940:intron 30.0%
GGTATTTATAGAACATGTCA+TGG + chr5_4:5008731-5008750 Msa0831940:intron 30.0%
AACATGTCATGGATTCAAAT+CGG + chr5_4:5008742-5008761 Msa0831940:intron 30.0%
!!! AGGATTTTGATGGATTTTGA+AGG - chr5_4:5008822-5008841 None:intergenic 30.0%
!! ATAGGATTTTGCCTGTTTTT+GGG + chr5_4:5008880-5008899 Msa0831940:intron 30.0%
CACTCAATTGGAAAAGTTAA+TGG - chr5_4:5009095-5009114 None:intergenic 30.0%
AGAAGAGGTAAAATATCAAG+TGG - chr5_4:5009181-5009200 None:intergenic 30.0%
!! ATGTTTTTGAATTCCTGTTC+TGG + chr5_4:5009233-5009252 Msa0831940:intron 30.0%
TAACAAAGAAACAAGCAACA+TGG + chr5_4:5009269-5009288 Msa0831940:exon 30.0%
ACAGCAACAAATTGATGAAA+TGG + chr5_4:5009446-5009465 Msa0831940:CDS 30.0%
AATTGATGAAATGGATACGT+AGG + chr5_4:5009455-5009474 Msa0831940:intron 30.0%
!!! ATGTATTTTTTTGTCGTTGC+AGG + chr5_4:5009730-5009749 Msa0831940:intron 30.0%
! AATTAAATGCTTCTTTTCGG+CGG + chr5_4:5009890-5009909 Msa0831940:intron 30.0%
GAGATGAAGTTAATAGATAC+AGG + chr5_4:5010005-5010024 Msa0831940:CDS 30.0%
GATGAAGTTAATAGATACAG+GGG + chr5_4:5010007-5010026 Msa0831940:CDS 30.0%
ATGAAGTTAATAGATACAGG+GGG + chr5_4:5010008-5010027 Msa0831940:CDS 30.0%
ATTAAGACCCTTAATCTGTA+CGG - chr5_4:5010482-5010501 None:intergenic 30.0%
! AATACATGAAGTATTTCCCA+AGG + chr5_4:5010626-5010645 Msa0831940:CDS 30.0%
! ATACATGAAGTATTTCCCAA+GGG + chr5_4:5010627-5010646 Msa0831940:CDS 30.0%
! TAATAAGGCTTAGAAAGTGT+TGG - chr5_4:5010777-5010796 None:intergenic 30.0%
! CAATGGTCAAATATGTTTTG+CGG + chr5_4:5010970-5010989 Msa0831940:CDS 30.0%
GTTTACAGTATCTCACAAAA+TGG - chr5_4:5011227-5011246 None:intergenic 30.0%
!! AAATGTAGAAGTTGATGATC+AGG + chr5_4:5011533-5011552 Msa0831940:CDS 30.0%
! AATATACTTTTCTTTCCCTC+CGG - chr5_4:5011788-5011807 None:intergenic 30.0%
ACTTACAGTGATACGAAATA+AGG - chr5_4:5012232-5012251 None:intergenic 30.0%
AATATTTATGTGATGCATGC+AGG + chr5_4:5013035-5013054 Msa0831940:intron 30.0%
CATTGAAAAAAGATACTCCA+AGG - chr5_4:5013116-5013135 None:intergenic 30.0%
!!! GGAGTATCTTTTTTCAATGT+TGG + chr5_4:5013117-5013136 Msa0831940:three_prime_UTR 30.0%
!! GTTGGATTTTGAAAGAACTT+AGG + chr5_4:5013135-5013154 Msa0831940:three_prime_UTR 30.0%
!! TTTTGAAAGAACTTAGGTTC+GGG + chr5_4:5013141-5013160 Msa0831940:three_prime_UTR 30.0%
AAGAGAAAGATTGATCATGG+TGG - chr5_4:5007750-5007769 None:intergenic 35.0%
TTTCCTGAAATAGTGTTAGG+AGG + chr5_4:5007802-5007821 Msa0831940:intron 35.0%
TCAACACTTCTTATCGAATG+TGG + chr5_4:5007837-5007856 Msa0831940:intron 35.0%
CAACACTTCTTATCGAATGT+GGG + chr5_4:5007838-5007857 Msa0831940:intron 35.0%
ACAAATACAAAGTAGAGTGG+AGG - chr5_4:5008073-5008092 None:intergenic 35.0%
! ATACACTCATTCAGGTTTCA+AGG - chr5_4:5008138-5008157 None:intergenic 35.0%
CTCAATGATTGTTCTAACCA+AGG + chr5_4:5008414-5008433 Msa0831940:intron 35.0%
GACTTTACTTCAAGTCGAAA+GGG + chr5_4:5008450-5008469 Msa0831940:intron 35.0%
! GACTTTTGTAGAATCGATGT+AGG + chr5_4:5008529-5008548 Msa0831940:intron 35.0%
ACATGTCATGGATTCAAATC+GGG + chr5_4:5008743-5008762 Msa0831940:intron 35.0%
! TCAAAATCGCAGGATTTTGA+TGG - chr5_4:5008832-5008851 None:intergenic 35.0%
! CAAAATCCTGCGATTTTGAA+TGG + chr5_4:5008833-5008852 Msa0831940:intron 35.0%
TGAAATCCATTCAAAATCGC+AGG - chr5_4:5008842-5008861 None:intergenic 35.0%
!! CGATTTTGTGCGATTTTGAT+AGG + chr5_4:5008862-5008881 Msa0831940:intron 35.0%
! GATAGGATTTTGCCTGTTTT+TGG + chr5_4:5008879-5008898 Msa0831940:intron 35.0%
!!! CAGGATTTTGAGACTTAAGT+CGG + chr5_4:5008951-5008970 Msa0831940:intron 35.0%
!!! AGGATTTTGAGACTTAAGTC+GGG + chr5_4:5008952-5008971 Msa0831940:intron 35.0%
!! AGTCGGGTTTTTGATAACAA+TGG + chr5_4:5008968-5008987 Msa0831940:intron 35.0%
CAGAAGAAAATGTGTAGAAG+AGG - chr5_4:5009196-5009215 None:intergenic 35.0%
!! TTCTTGCTGTGATTTTGATG+TGG - chr5_4:5009303-5009322 None:intergenic 35.0%
GCAAGAACATGTATCAGAAT+AGG + chr5_4:5009316-5009335 Msa0831940:CDS 35.0%
!! ACCAAAACTTGATTTGCGTT+GGG - chr5_4:5009666-5009685 None:intergenic 35.0%
!! AACCAAAACTTGATTTGCGT+TGG - chr5_4:5009667-5009686 None:intergenic 35.0%
!!! TCAAGTTTTGGTTTCAGAAC+AGG + chr5_4:5009674-5009693 Msa0831940:CDS 35.0%
TGAAGTTAATAGATACAGGG+GGG + chr5_4:5010009-5010028 Msa0831940:CDS 35.0%
GAAAATCGTAACAAACGATG+AGG - chr5_4:5010142-5010161 None:intergenic 35.0%
AAAAAAAACGCCAGCTTGAA+AGG + chr5_4:5010299-5010318 Msa0831940:intron 35.0%
TGGATGATGTTATATTGGCA+CGG - chr5_4:5010351-5010370 None:intergenic 35.0%
! AACAACATGAGTGCTATTGT+TGG - chr5_4:5010371-5010390 None:intergenic 35.0%
ATCTCAGTGACATAATTGGT+GGG - chr5_4:5010592-5010611 None:intergenic 35.0%
AATCTCAGTGACATAATTGG+TGG - chr5_4:5010593-5010612 None:intergenic 35.0%
GAGAATCTCAGTGACATAAT+TGG - chr5_4:5010596-5010615 None:intergenic 35.0%
TATGTCACTGAGATTCTCAA+TGG + chr5_4:5010598-5010617 Msa0831940:CDS 35.0%
! AGCTTTAATCCCAATGTGTT+GGG - chr5_4:5010661-5010680 None:intergenic 35.0%
! AAGCTTTAATCCCAATGTGT+TGG - chr5_4:5010662-5010681 None:intergenic 35.0%
ACATTGGGATTAAAGCTTGA+GGG + chr5_4:5010664-5010683 Msa0831940:CDS 35.0%
ATGAGGATATCTACAAGATC+AGG - chr5_4:5010724-5010743 None:intergenic 35.0%
TGATCTTGTAGATATCCTCA+TGG + chr5_4:5010723-5010742 Msa0831940:CDS 35.0%
ATTAGTACTTACCACTTGCA+AGG - chr5_4:5011061-5011080 None:intergenic 35.0%
!!! ACAAAATGGTTTTGACGAGT+AGG - chr5_4:5011213-5011232 None:intergenic 35.0%
TGTTGCATTTAACAGATGCA+AGG - chr5_4:5011286-5011305 None:intergenic 35.0%
!! TTTTAGGTGAAGGTGAAATG+TGG - chr5_4:5011405-5011424 None:intergenic 35.0%
!! GTTAATTCTGGACTTGCTTT+TGG + chr5_4:5011582-5011601 Msa0831940:CDS 35.0%
GTATATTGAATCTTGCGGAA+AGG + chr5_4:5011801-5011820 Msa0831940:CDS 35.0%
!! GCTAGCTTTAGTACAAGTAT+TGG + chr5_4:5011830-5011849 Msa0831940:CDS 35.0%
!! TAAGTGCTGCTACTTCTTTT+TGG + chr5_4:5011969-5011988 Msa0831940:CDS 35.0%
! GAATTGGCTCACATTTCAAA+TGG + chr5_4:5012183-5012202 Msa0831940:CDS 35.0%
ATTTCAAATGGTCGTGATTC+TGG + chr5_4:5012195-5012214 Msa0831940:CDS 35.0%
! AGAATTGCACTGATGTAACT+GGG + chr5_4:5012382-5012401 Msa0831940:CDS 35.0%
TTCAGGATTTCATGCATTGT+AGG - chr5_4:5012438-5012457 None:intergenic 35.0%
ACAATGCATGAAATCCTGAA+TGG + chr5_4:5012438-5012457 Msa0831940:CDS 35.0%
ATCTGGAAAAATAGCGAATC+CGG - chr5_4:5012496-5012515 None:intergenic 35.0%
!!! GATTCGCTATTTTTCCAGAT+GGG + chr5_4:5012496-5012515 Msa0831940:CDS 35.0%
TTGATTCTATTCCACATGCA+AGG + chr5_4:5012595-5012614 Msa0831940:CDS 35.0%
GTTAGCTACGACTAAAACTA+AGG - chr5_4:5012775-5012794 None:intergenic 35.0%
TTTGACCGTCTGATTAAGAT+TGG + chr5_4:5012853-5012872 Msa0831940:intron 35.0%
ACCATCCAATCTTAATCAGA+CGG - chr5_4:5012861-5012880 None:intergenic 35.0%
AAAGCTAAGATGACAAGCTT+GGG + chr5_4:5013064-5013083 Msa0831940:three_prime_UTR 35.0%
GATCCTCCTAACACTATTTC+AGG - chr5_4:5007808-5007827 None:intergenic 40.0%
TGCATGTATTAGTGTCGTGT+CGG - chr5_4:5007890-5007909 None:intergenic 40.0%
!! AGTCCCGATTTTGATAACCT+TGG - chr5_4:5008434-5008453 None:intergenic 40.0%
GGACTTTACTTCAAGTCGAA+AGG + chr5_4:5008449-5008468 Msa0831940:intron 40.0%
TCGAAAGGGAGTAGCAAAAT+CGG + chr5_4:5008464-5008483 Msa0831940:intron 40.0%
TCGATGTAGGATAGCAAAGT+CGG + chr5_4:5008542-5008561 Msa0831940:intron 40.0%
AATCGGGTCAATTTACGAAC+CGG + chr5_4:5008759-5008778 Msa0831940:intron 40.0%
CATAGCAAAGTCCCAAAAAC+AGG - chr5_4:5008894-5008913 None:intergenic 40.0%
!!! CTGTTTTTGGGACTTTGCTA+TGG + chr5_4:5008892-5008911 Msa0831940:intron 40.0%
CGACTTAAGTCTCAAAATCC+TGG - chr5_4:5008953-5008972 None:intergenic 40.0%
GGAAAAGTTAATGGCTATGC+AGG - chr5_4:5009086-5009105 None:intergenic 40.0%
CACAGTTACAGTCACTCAAT+TGG - chr5_4:5009107-5009126 None:intergenic 40.0%
! TTTTGAATTCCTGTTCTGGC+AGG + chr5_4:5009237-5009256 Msa0831940:intron 40.0%
AGAAGCAAACCAAATGAACG+TGG + chr5_4:5009356-5009375 Msa0831940:CDS 40.0%
!! CATCAATTTGTTGCTGTGTG+TGG - chr5_4:5009443-5009462 None:intergenic 40.0%
CTCTTCTCTGAGCATCATTA+GGG - chr5_4:5009618-5009637 None:intergenic 40.0%
TCTCTTCTCTGAGCATCATT+AGG - chr5_4:5009619-5009638 None:intergenic 40.0%
! ACCCAACGCAAATCAAGTTT+TGG + chr5_4:5009662-5009681 Msa0831940:CDS 40.0%
GAATGCAATATGCATGGCAA+CGG - chr5_4:5009764-5009783 None:intergenic 40.0%
CACAACGAATGCAATATGCA+TGG - chr5_4:5009770-5009789 None:intergenic 40.0%
CATGCATATTGCATTCGTTG+TGG + chr5_4:5009768-5009787 Msa0831940:intron 40.0%
GAATGCTCTCTTAAGGAAAG+AGG + chr5_4:5010114-5010133 Msa0831940:CDS 40.0%
GGATGATGTTATATTGGCAC+GGG - chr5_4:5010350-5010369 None:intergenic 40.0%
AGGGTCTTAATGAGAAGCAA+AGG + chr5_4:5010491-5010510 Msa0831940:CDS 40.0%
GGGTCTTAATGAGAAGCAAA+GGG + chr5_4:5010492-5010511 Msa0831940:CDS 40.0%
AAGTATTTCCCAAGGGCTAA+TGG + chr5_4:5010634-5010653 Msa0831940:CDS 40.0%
CACATTGGGATTAAAGCTTG+AGG + chr5_4:5010663-5010682 Msa0831940:CDS 40.0%
AGCATTAATCATGACCACCA+CGG - chr5_4:5010701-5010720 None:intergenic 40.0%
TGTAGATATCCTCATGGATG+TGG + chr5_4:5010729-5010748 Msa0831940:CDS 40.0%
AAAACTTGGACCAAACCATC+CGG + chr5_4:5010814-5010833 Msa0831940:intron 40.0%
TTGGTTCAACCTGATTGAAC+CGG - chr5_4:5010836-5010855 None:intergenic 40.0%
ACACTTGAAGTCCTTTCAAC+TGG + chr5_4:5011012-5011031 Msa0831940:CDS 40.0%
TTTGACGAGTAGGAACATGT+GGG - chr5_4:5011203-5011222 None:intergenic 40.0%
! TTTTGACGAGTAGGAACATG+TGG - chr5_4:5011204-5011223 None:intergenic 40.0%
TACTGTAAACTGCATCCAGA+TGG + chr5_4:5011237-5011256 Msa0831940:CDS 40.0%
AACTGCATCCAGATGGAATA+TGG + chr5_4:5011244-5011263 Msa0831940:CDS 40.0%
ACTGCATCCAGATGGAATAT+GGG + chr5_4:5011245-5011264 Msa0831940:CDS 40.0%
GTCTCAATCAAACAACCAGA+GGG - chr5_4:5011354-5011373 None:intergenic 40.0%
TGTCTCAATCAAACAACCAG+AGG - chr5_4:5011355-5011374 None:intergenic 40.0%
TTGATTGAGACACTCCCAAA+TGG + chr5_4:5011363-5011382 Msa0831940:CDS 40.0%
AGACCTTAGTGAGACCATTT+GGG - chr5_4:5011380-5011399 None:intergenic 40.0%
AAGACCTTAGTGAGACCATT+TGG - chr5_4:5011381-5011400 None:intergenic 40.0%
!! TGTAGAAGTTGATGATCAGG+TGG + chr5_4:5011536-5011555 Msa0831940:CDS 40.0%
GCAAGTCCAGAATTAACTAG+AGG - chr5_4:5011579-5011598 None:intergenic 40.0%
TATATACCATGATGTTCCCG+TGG - chr5_4:5011678-5011697 None:intergenic 40.0%
! ATGTACAGTGAGATTGACTC+CGG + chr5_4:5011766-5011785 Msa0831940:intron 40.0%
ATTGAATCTTGCGGAAAGGT+TGG + chr5_4:5011805-5011824 Msa0831940:CDS 40.0%
GTTCTTCTACAACACATGCT+TGG + chr5_4:5011852-5011871 Msa0831940:CDS 40.0%
TACAACACATGCTTGGACAA+AGG + chr5_4:5011859-5011878 Msa0831940:CDS 40.0%
AGAAAATCAAACACCCTCCT+TGG - chr5_4:5012007-5012026 None:intergenic 40.0%
CAATTCATGAACTATACCGC+CGG - chr5_4:5012169-5012188 None:intergenic 40.0%
!! GCTCTGAATTTTCACTCTAC+AGG - chr5_4:5012338-5012357 None:intergenic 40.0%
AAATTCAGAGCAGAGTGATG+TGG + chr5_4:5012347-5012366 Msa0831940:CDS 40.0%
! GAGAATTGCACTGATGTAAC+TGG + chr5_4:5012381-5012400 Msa0831940:CDS 40.0%
TGCATTGTAGGTATTTGCAC+AGG - chr5_4:5012426-5012445 None:intergenic 40.0%
ATGCATGAAATCCTGAATGG+CGG + chr5_4:5012441-5012460 Msa0831940:CDS 40.0%
!!! GGATTCGCTATTTTTCCAGA+TGG + chr5_4:5012495-5012514 Msa0831940:CDS 40.0%
!! GCATTTGTTATACACCCATC+TGG - chr5_4:5012513-5012532 None:intergenic 40.0%
GATGGGTGTATAACAAATGC+AGG + chr5_4:5012513-5012532 Msa0831940:CDS 40.0%
GCAGGACCAATTATGAATGT+CGG + chr5_4:5012531-5012550 Msa0831940:CDS 40.0%
CCAGATCCGACATTCATAAT+TGG - chr5_4:5012540-5012559 None:intergenic 40.0%
CCAATTATGAATGTCGGATC+TGG + chr5_4:5012537-5012556 Msa0831940:CDS 40.0%
ATTATGAATGTCGGATCTGG+AGG + chr5_4:5012540-5012559 Msa0831940:CDS 40.0%
TTATGAATGTCGGATCTGGA+GGG + chr5_4:5012541-5012560 Msa0831940:CDS 40.0%
! CCTGATCAAAGTGTTAACAG+TGG - chr5_4:5012640-5012659 None:intergenic 40.0%
CCACTGTTAACACTTTGATC+AGG + chr5_4:5012637-5012656 Msa0831940:CDS 40.0%
AAAACTGCAGTGATGCCTAA+TGG + chr5_4:5012678-5012697 Msa0831940:CDS 40.0%
ACCGTCTGATTAAGATTGGA+TGG + chr5_4:5012857-5012876 Msa0831940:intron 40.0%
CAAAGCTAAGATGACAAGCT+TGG + chr5_4:5013063-5013082 Msa0831940:three_prime_UTR 40.0%
AAGCTAAGATGACAAGCTTG+GGG + chr5_4:5013065-5013084 Msa0831940:three_prime_UTR 40.0%
TTGGTGTGTTAGTGTCCATG+TGG + chr5_4:5007950-5007969 Msa0831940:intron 45.0%
CACAGAGACAATACACCACA+TGG - chr5_4:5007968-5007987 None:intergenic 45.0%
TTGTCTCTGTGCTTCACAAC+AGG + chr5_4:5007977-5007996 Msa0831940:intron 45.0%
TGCACTAGTCATCTCCAAAC+AGG + chr5_4:5008261-5008280 Msa0831940:intron 45.0%
CGAAAGGGAGTAGCAAAATC+GGG + chr5_4:5008465-5008484 Msa0831940:intron 45.0%
CGATGTAGGATAGCAAAGTC+GGG + chr5_4:5008543-5008562 Msa0831940:intron 45.0%
TACGCAAAGTCGCAAAAACC+AGG + chr5_4:5008932-5008951 Msa0831940:intron 45.0%
TGCAGGACAGTAACTCAGTA+AGG - chr5_4:5009069-5009088 None:intergenic 45.0%
CTCTAATAACCTGCCAGAAC+AGG - chr5_4:5009249-5009268 None:intergenic 45.0%
AGCAAACCAAATGAACGTGG+AGG + chr5_4:5009359-5009378 Msa0831940:CDS 45.0%
!!! CTTTTTCTGGGACGTTGGTT+GGG - chr5_4:5009408-5009427 None:intergenic 45.0%
!! CAATTTGTTGCTGTGTGTGG+CGG - chr5_4:5009440-5009459 None:intergenic 45.0%
CTCTGAGCATCATTAGGGTT+AGG - chr5_4:5009613-5009632 None:intergenic 45.0%
GTTACCACATGCAACGTATG+TGG + chr5_4:5010037-5010056 Msa0831940:CDS 45.0%
ACTTCCACATACGTTGCATG+TGG - chr5_4:5010044-5010063 None:intergenic 45.0%
GACTGGAGAATGCTCTCTTA+AGG + chr5_4:5010107-5010126 Msa0831940:CDS 45.0%
! ACGCCAGCTTGAAAGGTATA+TGG + chr5_4:5010306-5010325 Msa0831940:intron 45.0%
! CGCCAGCTTGAAAGGTATAT+GGG + chr5_4:5010307-5010326 Msa0831940:intron 45.0%
CTCCCATATACCTTTCAAGC+TGG - chr5_4:5010312-5010331 None:intergenic 45.0%
!!! GTTTCACGCTCTGCTGATTT+TGG + chr5_4:5010388-5010407 Msa0831940:CDS 45.0%
!!! TCTGCTGATTTTGGAGTTGC+TGG + chr5_4:5010397-5010416 Msa0831940:CDS 45.0%
AAGACCCTTAATCTGTACGG+AGG - chr5_4:5010479-5010498 None:intergenic 45.0%
!! GTTGTAGAGCTTGCTGTTGT+TGG + chr5_4:5010514-5010533 Msa0831940:CDS 45.0%
!! AGAGCTTGCTGTTGTTGGAA+TGG + chr5_4:5010519-5010538 Msa0831940:CDS 45.0%
AATGGCTGAACTGACCAAAC+TGG + chr5_4:5010537-5010556 Msa0831940:CDS 45.0%
ACCAAACTGGCTAGGACATA+TGG + chr5_4:5010550-5010569 Msa0831940:CDS 45.0%
TCCATATGTCCTAGCCAGTT+TGG - chr5_4:5010554-5010573 None:intergenic 45.0%
AATTGGTGGGAAGCCAAAGA+GGG - chr5_4:5010579-5010598 None:intergenic 45.0%
TAATTGGTGGGAAGCCAAAG+AGG - chr5_4:5010580-5010599 None:intergenic 45.0%
CACTGAGATTCTCAATGGAG+AGG + chr5_4:5010603-5010622 Msa0831940:CDS 45.0%
GCTAATGGTCCCAACACATT+GGG + chr5_4:5010649-5010668 Msa0831940:CDS 45.0%
AATGACTCACCACATCCATG+AGG - chr5_4:5010741-5010760 None:intergenic 45.0%
TTCAACCTGATTGAACCGGA+TGG - chr5_4:5010832-5010851 None:intergenic 45.0%
TGAAGTCCTTTCAACTGGAG+TGG + chr5_4:5011017-5011036 Msa0831940:CDS 45.0%
GAAGTCCTTTCAACTGGAGT+GGG + chr5_4:5011018-5011037 Msa0831940:CDS 45.0%
TTGACGAGTAGGAACATGTG+GGG - chr5_4:5011202-5011221 None:intergenic 45.0%
TCCAGATGGAATATGGGTAG+TGG + chr5_4:5011251-5011270 Msa0831940:CDS 45.0%
ACTCCCAAATGGTCTCACTA+AGG + chr5_4:5011374-5011393 Msa0831940:CDS 45.0%
!!! TTGCTTTTGGAGCTAAACGC+TGG + chr5_4:5011595-5011614 Msa0831940:CDS 45.0%
!!! TGCTTTTGGAGCTAAACGCT+GGG + chr5_4:5011596-5011615 Msa0831940:CDS 45.0%
!! TGGACAAAGGTACCTGGAAA+CGG + chr5_4:5011872-5011891 Msa0831940:CDS 45.0%
GTCATGACCATTACAACCTC+CGG - chr5_4:5011899-5011918 None:intergenic 45.0%
AGCACTTAGCACAACACTGA+CGG - chr5_4:5011957-5011976 None:intergenic 45.0%
AAATCAAACACCCTCCTTGG+AGG - chr5_4:5012004-5012023 None:intergenic 45.0%
CGGCGGTATAGTTCATGAAT+TGG + chr5_4:5012167-5012186 Msa0831940:CDS 45.0%
GGAAAAATAGCGAATCCGGA+AGG - chr5_4:5012492-5012511 None:intergenic 45.0%
CACTTTGATCAGGAACACTG+TGG + chr5_4:5012647-5012666 Msa0831940:CDS 45.0%
TGATCAGGAACACTGTGGAA+AGG + chr5_4:5012652-5012671 Msa0831940:CDS 45.0%
TTTGGACCTATTGTGACTGC+AGG + chr5_4:5012943-5012962 Msa0831940:intron 45.0%
TGGATTCCTGCAGTCACAAT+AGG - chr5_4:5012952-5012971 None:intergenic 45.0%
ACAAGTCAATGAACGCACCT+TGG + chr5_4:5013096-5013115 Msa0831940:three_prime_UTR 45.0%
!!! TAACTAATTATATTTTATAT+AGG + chr5_4:5009928-5009947 Msa0831940:intron 5.0%
!!! TTTTTTTTTTTTTACATAAA+AGG - chr5_4:5010284-5010303 None:intergenic 5.0%
!! AACAAATTTAATAATATAAA+TGG - chr5_4:5010942-5010961 None:intergenic 5.0%
!!! ACTATTATTAATATTATTTT+AGG - chr5_4:5011421-5011440 None:intergenic 5.0%
AAGGAGCCTCCACGTTCATT+TGG - chr5_4:5009368-5009387 None:intergenic 50.0%
GGTTGCTGGTCATCACTTGA+AGG - chr5_4:5009387-5009406 None:intergenic 50.0%
!!! CCTTTTTCTGGGACGTTGGT+TGG - chr5_4:5009409-5009428 None:intergenic 50.0%
CCAACCAACGTCCCAGAAAA+AGG + chr5_4:5009406-5009425 Msa0831940:CDS 50.0%
!!! AGGTCCTTTTTCTGGGACGT+TGG - chr5_4:5009413-5009432 None:intergenic 50.0%
! CGGCGATAGGTCCTTTTTCT+GGG - chr5_4:5009420-5009439 None:intergenic 50.0%
AGAGAAGAGAGCTGAGCCTT+CGG + chr5_4:5009629-5009648 Msa0831940:CDS 50.0%
GATTTGCGTTGGGTCTAACC+CGG - chr5_4:5009656-5009675 None:intergenic 50.0%
GTCATGTGACATTTCCCCAG+CGG - chr5_4:5010074-5010093 None:intergenic 50.0%
TGACGATCAGCAGCTAAGAC+TGG + chr5_4:5010090-5010109 Msa0831940:CDS 50.0%
ATATTGGCACGGGAATCTGC+AGG - chr5_4:5010340-5010359 None:intergenic 50.0%
!!! GCTGATTTTGGAGTTGCTGG+TGG + chr5_4:5010400-5010419 Msa0831940:CDS 50.0%
GGAGTTGCTGGTGGTAACAA+TGG + chr5_4:5010409-5010428 Msa0831940:CDS 50.0%
TGAAAGCCTCTCCTACCATG+CGG - chr5_4:5010444-5010463 None:intergenic 50.0%
GTAGGAGAGGCTTTCACTGT+TGG + chr5_4:5010448-5010467 Msa0831940:CDS 50.0%
TGGCTCCTCCGTACAGATTA+AGG + chr5_4:5010471-5010490 Msa0831940:CDS 50.0%
GGCTCCTCCGTACAGATTAA+GGG + chr5_4:5010472-5010491 Msa0831940:CDS 50.0%
CTGAACTGACCAAACTGGCT+AGG + chr5_4:5010542-5010561 Msa0831940:CDS 50.0%
ATTGGTGGGAAGCCAAAGAG+GGG - chr5_4:5010578-5010597 None:intergenic 50.0%
TGTTGGGACCATTAGCCCTT+GGG - chr5_4:5010645-5010664 None:intergenic 50.0%
GGCTAATGGTCCCAACACAT+TGG + chr5_4:5010648-5010667 Msa0831940:CDS 50.0%
TGAGGGTTCGAAAGAATCCG+TGG + chr5_4:5010681-5010700 Msa0831940:CDS 50.0%
CCTGATTGAACCGGATGGTT+TGG - chr5_4:5010827-5010846 None:intergenic 50.0%
CCAAACCATCCGGTTCAATC+AGG + chr5_4:5010824-5010843 Msa0831940:intron 50.0%
TACCTCCCACTCCAGTTGAA+AGG - chr5_4:5011026-5011045 None:intergenic 50.0%
GCCACTACCCATATTCCATC+TGG - chr5_4:5011255-5011274 None:intergenic 50.0%
AGAACCAACAGAAGACCCTC+TGG + chr5_4:5011336-5011355 Msa0831940:CDS 50.0%
ACAACCAGAGGGTCTTCTGT+TGG - chr5_4:5011343-5011362 None:intergenic 50.0%
ATGATGTTCCCGTGGAACGT+TGG - chr5_4:5011670-5011689 None:intergenic 50.0%
AACGTTCCACGGGAACATCA+TGG + chr5_4:5011669-5011688 Msa0831940:CDS 50.0%
! TACAGTGAGATTGACTCCGG+AGG + chr5_4:5011769-5011788 Msa0831940:intron 50.0%
! ACAGTGAGATTGACTCCGGA+GGG + chr5_4:5011770-5011789 Msa0831940:intron 50.0%
!! CATGCTTGGACAAAGGTACC+TGG + chr5_4:5011866-5011885 Msa0831940:CDS 50.0%
!! AAAGGTACCTGGAAACGGAC+CGG + chr5_4:5011877-5011896 Msa0831940:CDS 50.0%
AAACGGACCGGAGGTTGTAA+TGG + chr5_4:5011889-5011908 Msa0831940:CDS 50.0%
GCACTTAGCACAACACTGAC+GGG - chr5_4:5011956-5011975 None:intergenic 50.0%
! TTTGGCTTCCAGTTCCTCCA+AGG + chr5_4:5011987-5012006 Msa0831940:CDS 50.0%
TTCATGAACTATACCGCCGG+CGG - chr5_4:5012166-5012185 None:intergenic 50.0%
CGTCTTACTCTGCTTCCTTC+CGG + chr5_4:5012474-5012493 Msa0831940:CDS 50.0%
! GCGGCGATAGGTCCTTTTTC+TGG - chr5_4:5009421-5009440 None:intergenic 55.0%
GAACAGGCGCACTTCACTCA+AGG + chr5_4:5009690-5009709 Msa0831940:CDS 55.0%
TGTGGAAGTTCCACTACCGC+TGG + chr5_4:5010055-5010074 Msa0831940:CDS 55.0%
GTGGAAGTTCCACTACCGCT+GGG + chr5_4:5010056-5010075 Msa0831940:CDS 55.0%
TGGAAGTTCCACTACCGCTG+GGG + chr5_4:5010057-5010076 Msa0831940:CDS 55.0%
TGACATTTCCCCAGCGGTAG+TGG - chr5_4:5010068-5010087 None:intergenic 55.0%
GGAGAGGCTTTCACTGTTGG+TGG + chr5_4:5010451-5010470 Msa0831940:CDS 55.0%
GGACATATGGACCCCCTCTT+TGG + chr5_4:5010563-5010582 Msa0831940:CDS 55.0%
TTGGTGGGAAGCCAAAGAGG+GGG - chr5_4:5010577-5010596 None:intergenic 55.0%
GTGTTGGGACCATTAGCCCT+TGG - chr5_4:5010646-5010665 None:intergenic 55.0%
GGGTTCGAAAGAATCCGTGG+TGG + chr5_4:5010684-5010703 Msa0831940:CDS 55.0%
GTCCTTTCAACTGGAGTGGG+AGG + chr5_4:5011021-5011040 Msa0831940:CDS 55.0%
GGAGTGGGAGGTAACTACGA+TGG + chr5_4:5011033-5011052 Msa0831940:CDS 55.0%
CTACGATGGAGCCTTGCAAG+TGG + chr5_4:5011047-5011066 Msa0831940:CDS 55.0%
GAGTAGGAACATGTGGGGAG+GGG - chr5_4:5011197-5011216 None:intergenic 55.0%
CGAGTAGGAACATGTGGGGA+GGG - chr5_4:5011198-5011217 None:intergenic 55.0%
ACGAGTAGGAACATGTGGGG+AGG - chr5_4:5011199-5011218 None:intergenic 55.0%
AAACGGCCACCAACGTTCCA+CGG + chr5_4:5011658-5011677 Msa0831940:CDS 55.0%
ATGTTCCCGTGGAACGTTGG+TGG - chr5_4:5011667-5011686 None:intergenic 55.0%
GCTTCCAGTTCCTCCAAGGA+GGG + chr5_4:5011991-5012010 Msa0831940:CDS 55.0%
AACACCCTCCTTGGAGGAAC+TGG - chr5_4:5011998-5012017 None:intergenic 55.0%
CAGTGGGATATTCTCTCCGC+CGG + chr5_4:5012147-5012166 Msa0831940:intron 55.0%
! TCCACATGCAAGGCTAGCTC+TGG + chr5_4:5012605-5012624 Msa0831940:CDS 55.0%
! CCACATGCAAGGCTAGCTCT+GGG + chr5_4:5012606-5012625 Msa0831940:CDS 55.0%
! TGGGACGTTGGTTGGGTTGC+TGG - chr5_4:5009401-5009420 None:intergenic 60.0%
TTGCTGTGTGTGGCGGCGAT+AGG - chr5_4:5009433-5009452 None:intergenic 60.0%
AGAGAGCTGAGCCTTCGGAC+CGG + chr5_4:5009634-5009653 Msa0831940:CDS 60.0%
TTGGGTCTAACCCGGTCCGA+AGG - chr5_4:5009648-5009667 None:intergenic 60.0%
CAATGGAGCACACCACCGCA+TGG + chr5_4:5010426-5010445 Msa0831940:CDS 60.0%
ACACCACCGCATGGTAGGAG+AGG + chr5_4:5010435-5010454 Msa0831940:CDS 60.0%
AAGCCTCTCCTACCATGCGG+TGG - chr5_4:5010441-5010460 None:intergenic 60.0%
AACGGCCACCAACGTTCCAC+GGG + chr5_4:5011659-5011678 Msa0831940:CDS 60.0%
ACAACCTCCGGTCCGTTTCC+AGG - chr5_4:5011887-5011906 None:intergenic 60.0%
GGCTTCCAGTTCCTCCAAGG+AGG + chr5_4:5011990-5012009 Msa0831940:CDS 60.0%
TGGGATATTCTCTCCGCCGG+CGG + chr5_4:5012150-5012169 Msa0831940:CDS 60.0%
GACTTGAGTCGCCGCCATTC+AGG - chr5_4:5012455-5012474 None:intergenic 60.0%
!! CCCAGAGCTAGCCTTGCATG+TGG - chr5_4:5012609-5012628 None:intergenic 60.0%
GAGAGCTGAGCCTTCGGACC+GGG + chr5_4:5009635-5009654 Msa0831940:CDS 65.0%
GGAGCACACCACCGCATGGT+AGG + chr5_4:5010430-5010449 Msa0831940:CDS 65.0%
GGTACCTGGAAACGGACCGG+AGG + chr5_4:5011880-5011899 Msa0831940:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 5007725 5013203 5007725 ID=Msa0831940;Name=Msa0831940
chr5_4 mRNA 5007725 5013203 5007725 ID=Msa0831940-mRNA-1;Parent=Msa0831940;Name=Msa0831940-mRNA-1;_AED=0.10;_eAED=0.10;_QI=82|1|0.83|1|0.81|0.66|12|165|720
chr5_4 exon 5007725 5007777 5007725 ID=Msa0831940-mRNA-1:exon:2097;Parent=Msa0831940-mRNA-1
chr5_4 exon 5009259 5009472 5009259 ID=Msa0831940-mRNA-1:exon:2098;Parent=Msa0831940-mRNA-1
chr5_4 exon 5009594 5009711 5009594 ID=Msa0831940-mRNA-1:exon:2099;Parent=Msa0831940-mRNA-1
chr5_4 exon 5009950 5010135 5009950 ID=Msa0831940-mRNA-1:exon:2100;Parent=Msa0831940-mRNA-1
chr5_4 exon 5010313 5010750 5010313 ID=Msa0831940-mRNA-1:exon:2101;Parent=Msa0831940-mRNA-1
chr5_4 exon 5010967 5011068 5010967 ID=Msa0831940-mRNA-1:exon:2102;Parent=Msa0831940-mRNA-1
chr5_4 exon 5011174 5011395 5011174 ID=Msa0831940-mRNA-1:exon:2103;Parent=Msa0831940-mRNA-1
chr5_4 exon 5011519 5011690 5011519 ID=Msa0831940-mRNA-1:exon:2104;Parent=Msa0831940-mRNA-1
chr5_4 exon 5011774 5012051 5011774 ID=Msa0831940-mRNA-1:exon:2105;Parent=Msa0831940-mRNA-1
chr5_4 exon 5012150 5012245 5012150 ID=Msa0831940-mRNA-1:exon:2106;Parent=Msa0831940-mRNA-1
chr5_4 exon 5012342 5012725 5012342 ID=Msa0831940-mRNA-1:exon:2107;Parent=Msa0831940-mRNA-1
chr5_4 exon 5013057 5013203 5013057 ID=Msa0831940-mRNA-1:exon:2108;Parent=Msa0831940-mRNA-1
chr5_4 five_prime_UTR 5007725 5007777 5007725 ID=Msa0831940-mRNA-1:five_prime_utr;Parent=Msa0831940-mRNA-1
chr5_4 five_prime_UTR 5009259 5009287 5009259 ID=Msa0831940-mRNA-1:five_prime_utr;Parent=Msa0831940-mRNA-1
chr5_4 CDS 5009288 5009472 5009288 ID=Msa0831940-mRNA-1:cds;Parent=Msa0831940-mRNA-1
chr5_4 CDS 5009594 5009711 5009594 ID=Msa0831940-mRNA-1:cds;Parent=Msa0831940-mRNA-1
chr5_4 CDS 5009950 5010135 5009950 ID=Msa0831940-mRNA-1:cds;Parent=Msa0831940-mRNA-1
chr5_4 CDS 5010313 5010750 5010313 ID=Msa0831940-mRNA-1:cds;Parent=Msa0831940-mRNA-1
chr5_4 CDS 5010967 5011068 5010967 ID=Msa0831940-mRNA-1:cds;Parent=Msa0831940-mRNA-1
chr5_4 CDS 5011174 5011395 5011174 ID=Msa0831940-mRNA-1:cds;Parent=Msa0831940-mRNA-1
chr5_4 CDS 5011519 5011690 5011519 ID=Msa0831940-mRNA-1:cds;Parent=Msa0831940-mRNA-1
chr5_4 CDS 5011774 5012051 5011774 ID=Msa0831940-mRNA-1:cds;Parent=Msa0831940-mRNA-1
chr5_4 CDS 5012150 5012245 5012150 ID=Msa0831940-mRNA-1:cds;Parent=Msa0831940-mRNA-1
chr5_4 CDS 5012342 5012707 5012342 ID=Msa0831940-mRNA-1:cds;Parent=Msa0831940-mRNA-1
chr5_4 three_prime_UTR 5012708 5012725 5012708 ID=Msa0831940-mRNA-1:three_prime_utr;Parent=Msa0831940-mRNA-1
chr5_4 three_prime_UTR 5013057 5013203 5013057 ID=Msa0831940-mRNA-1:three_prime_utr;Parent=Msa0831940-mRNA-1
Gene Sequence

>Msa0831940

ATGGTGAATACTCCACATCAAAATCACAGCAAGAACATGTATCAGAATAGGATGACAAGAACAAGAGAAGAAGCAAACCAAATGAACGTGGAGGCTCCTTCAAGTGATGACCAGCAACCCAACCAACGTCCCAGAAAAAGGACCTATCGCCGCCACACACAGCAACAAATTGATGAAATGGATACTTTCTTCAAGCAGTGTCCTAACCCTAATGATGCTCAGAGAAGAGAGCTGAGCCTTCGGACCGGGTTAGACCCAACGCAAATCAAGTTTTGGTTTCAGAACAGGCGCACTTCACTCAAGGTTCAAACTGATAGGGAAGAGAATGAGCTATTAAAGATTGAGAATGAAAAACTTCGAGATGAAGTTAATAGATACAGGGGGGCAATTGTTACCACATGCAACGTATGTGGAAGTTCCACTACCGCTGGGGAAATGTCACATGACGATCAGCAGCTAAGACTGGAGAATGCTCTCTTAAGGAAAGAGCTTGAAAGGTATATGGGAGAGACGCCTGCAGATTCCCGTGCCAATATAACATCATCCAACAATAGCACTCATGTTGTTTCACGCTCTGCTGATTTTGGAGTTGCTGGTGGTAACAATGGAGCACACCACCGCATGGTAGGAGAGGCTTTCACTGTTGGTGGCTCCTCCGTACAGATTAAGGGTCTTAATGAGAAGCAAAGGGTTGTAGAGCTTGCTGTTGTTGGAATGGCTGAACTGACCAAACTGGCTAGGACATATGGACCCCCTCTTTGGCTTCCCACCAATTATGTCACTGAGATTCTCAATGGAGAGGAATACATGAAGTATTTCCCAAGGGCTAATGGTCCCAACACATTGGGATTAAAGCTTGAGGGTTCGAAAGAATCCGTGGTGGTCATGATTAATGCTCCTGATCTTGTAGATATCCTCATGGATGTGAATCAATGGTCAAATATGTTTTGCGGCATTGTTTCTAAAGCAGCAACACTTGAAGTCCTTTCAACTGGAGTGGGAGGTAACTACGATGGAGCCTTGCAAGTGATGACAGCTGAATTTCAAGTCCCCTCCCCACATGTTCCTACTCGTCAAAACCATTTTGTGAGATACTGTAAACTGCATCCAGATGGAATATGGGTAGTGGCTGATGTGTCCTTGCATCTGTTAAATGCAACATCTGCTAGTAGTAGTAGTAGTACTGCTTCAAGAACCAACAGAAGACCCTCTGGTTGTTTGATTGAGACACTCCCAAATGGTCTCACTAAGGTTACATGGATTGAAAATGTAGAAGTTGATGATCAGGTGGTGCAAAATATATATAAACCTCTAGTTAATTCTGGACTTGCTTTTGGAGCTAAACGCTGGGTAGCTACATTACATCGACAATCTGATCGTCTTGTTTTTAAAACGGCCACCAACGTTCCACGGGAACATCATGTGAGATTGACTCCGGAGGGAAAGAAAAGTATATTGAATCTTGCGGAAAGGTTGGTAGCTAGCTTTAGTACAAGTATTGGTTCTTCTACAACACATGCTTGGACAAAGGTACCTGGAAACGGACCGGAGGTTGTAATGGTCATGACGAAAAGATATATCGATGAATCGAGCATTGACAAACCCGTCAGTGTTGTGCTAAGTGCTGCTACTTCTTTTTGGCTTCCAGTTCCTCCAAGGAGGGTGTTTGATTTTCTTCGAGATCAAAACACAAGAAAACATTGGGATATTCTCTCCGCCGGCGGTATAGTTCATGAATTGGCTCACATTTCAAATGGTCGTGATTCTGGCAACTATGTCTCCTTATTTCGTATCACTAGTGAAAATTCAGAGCAGAGTGATGTGGTAGTACTGCAAGAGAATTGCACTGATGTAACTGGGTCATATGTAGTATATGCGCCTGTGCAAATACCTACAATGCATGAAATCCTGAATGGCGGCGACTCAAGTCGTCTTACTCTGCTTCCTTCCGGATTCGCTATTTTTCCAGATGGGTGTATAACAAATGCAGGACCAATTATGAATGTCGGATCTGGAGGGTCTCTTGTCACAGTTGCATTTCAGATTATAGTTGATTCTATTCCACATGCAAGGCTAGCTCTGGGTTCAATCACCACTGTTAACACTTTGATCAGGAACACTGTGGAAAGGATTAAAACTGCAGTGATGCCTAATGGCATCTAA
Protein sequence

>Msa0831940

MVNTPHQNHSKNMYQNRMTRTREEANQMNVEAPSSDDQQPNQRPRKRTYRRHTQQQIDEMDTFFKQCPNPNDAQRRELSLRTGLDPTQIKFWFQNRRTSLKVQTDREENELLKIENEKLRDEVNRYRGAIVTTCNVCGSSTTAGEMSHDDQQLRLENALLRKELERYMGETPADSRANITSSNNSTHVVSRSADFGVAGGNNGAHHRMVGEAFTVGGSSVQIKGLNEKQRVVELAVVGMAELTKLARTYGPPLWLPTNYVTEILNGEEYMKYFPRANGPNTLGLKLEGSKESVVVMINAPDLVDILMDVNQWSNMFCGIVSKAATLEVLSTGVGGNYDGALQVMTAEFQVPSPHVPTRQNHFVRYCKLHPDGIWVVADVSLHLLNATSASSSSSTASRTNRRPSGCLIETLPNGLTKVTWIENVEVDDQVVQNIYKPLVNSGLAFGAKRWVATLHRQSDRLVFKTATNVPREHHVRLTPEGKKSILNLAERLVASFSTSIGSSTTHAWTKVPGNGPEVVMVMTKRYIDESSIDKPVSVVLSAATSFWLPVPPRRVFDFLRDQNTRKHWDILSAGGIVHELAHISNGRDSGNYVSLFRITSENSEQSDVVVLQENCTDVTGSYVVYAPVQIPTMHEILNGGDSSRLTLLPSGFAIFPDGCITNAGPIMNVGSGGSLVTVAFQIIVDSIPHARLALGSITTVNTLIRNTVERIKTAVMPNGI*