Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0424330 | PNY17631.1 | 84.595 | 370 | 50 | 1 | 1 | 363 | 1 | 370 | 0.0 | 657 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0424330 | sp|Q84VY3|STAD6_ARATH | 67.222 | 360 | 112 | 3 | 10 | 363 | 31 | 390 | 0.0 | 511 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0424330 | A0A2K3PQT1 | 84.595 | 370 | 50 | 1 | 1 | 363 | 1 | 370 | 0.0 | 657 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006980 | Msa0424330 | 0.824263 | 8.873117e-54 | -8.615850e-47 |
| Msa0015710 | Msa0424330 | 0.807159 | 5.791712e-50 | -8.615850e-47 |
| Msa0019600 | Msa0424330 | 0.870932 | 1.003776e-66 | -8.615850e-47 |
| Msa0050040 | Msa0424330 | 0.802985 | 4.325087e-49 | -8.615850e-47 |
| Msa0066320 | Msa0424330 | 0.842377 | 2.684550e-58 | -8.615850e-47 |
| Msa0102990 | Msa0424330 | 0.802217 | 6.230049e-49 | -8.615850e-47 |
| Msa0104500 | Msa0424330 | 0.803133 | 4.031461e-49 | -8.615850e-47 |
| Msa0109880 | Msa0424330 | 0.800078 | 1.706368e-48 | -8.615850e-47 |
| Msa0111750 | Msa0424330 | 0.854077 | 1.564936e-61 | -8.615850e-47 |
| Msa0124130 | Msa0424330 | 0.851182 | 1.048299e-60 | -8.615850e-47 |
| Msa0141120 | Msa0424330 | 0.836896 | 7.150930e-57 | -8.615850e-47 |
| Msa0149140 | Msa0424330 | 0.852816 | 3.602180e-61 | -8.615850e-47 |
| Msa0152480 | Msa0424330 | 0.800496 | 1.402739e-48 | -8.615850e-47 |
| Msa0152500 | Msa0424330 | 0.810162 | 1.322034e-50 | -8.615850e-47 |
| Msa0156250 | Msa0424330 | 0.831043 | 2.087625e-55 | -8.615850e-47 |
| Msa0185490 | Msa0424330 | 0.840751 | 7.201550e-58 | -8.615850e-47 |
| Msa0194380 | Msa0424330 | 0.813008 | 3.180438e-51 | -8.615850e-47 |
| Msa0197100 | Msa0424330 | 0.804558 | 2.039470e-49 | -8.615850e-47 |
| Msa0203030 | Msa0424330 | 0.807798 | 4.237870e-50 | -8.615850e-47 |
| Msa0212080 | Msa0424330 | 0.835569 | 1.554698e-56 | -8.615850e-47 |
| Msa0212150 | Msa0424330 | 0.845685 | 3.480647e-59 | -8.615850e-47 |
| Msa0217230 | Msa0424330 | 0.821823 | 3.288981e-53 | -8.615850e-47 |
| Msa0219190 | Msa0424330 | 0.826697 | 2.353407e-54 | -8.615850e-47 |
| Msa0373960 | Msa0424330 | 0.810117 | 1.351886e-50 | -8.615850e-47 |
| Msa0375680 | Msa0424330 | 0.807057 | 6.087612e-50 | -8.615850e-47 |
| Msa0375700 | Msa0424330 | 0.804240 | 2.375315e-49 | -8.615850e-47 |
| Msa0392420 | Msa0424330 | 0.822145 | 2.769924e-53 | -8.615850e-47 |
| Msa0392460 | Msa0424330 | 0.818214 | 2.203530e-52 | -8.615850e-47 |
| Msa0392490 | Msa0424330 | 0.819393 | 1.188922e-52 | -8.615850e-47 |
| Msa0406000 | Msa0424330 | 0.899019 | 2.996508e-77 | -8.615850e-47 |
| Msa0424330 | Msa0424340 | 0.896350 | 4.014663e-76 | -8.615850e-47 |
| Msa0424330 | Msa0424350 | 0.878950 | 1.854814e-69 | -8.615850e-47 |
| Msa0424330 | Msa0441590 | 0.820276 | 7.473414e-53 | -8.615850e-47 |
| Msa0424330 | Msa0451400 | 0.898880 | 3.437176e-77 | -8.615850e-47 |
| Msa0424330 | Msa0487570 | 0.825617 | 4.250766e-54 | -8.615850e-47 |
| Msa0424330 | Msa0487630 | 0.814498 | 1.494356e-51 | -8.615850e-47 |
| Msa0424330 | Msa0492190 | 0.881493 | 2.292728e-70 | -8.615850e-47 |
| Msa0424330 | Msa0515950 | 0.945588 | 2.303821e-104 | -8.615850e-47 |
| Msa0424330 | Msa0534930 | 0.863620 | 2.186139e-64 | -8.615850e-47 |
| Msa0424330 | Msa0535040 | 0.834413 | 3.040962e-56 | -8.615850e-47 |
| Msa0424330 | Msa0575740 | 0.836906 | 7.108356e-57 | -8.615850e-47 |
| Msa0424330 | Msa0591790 | 0.866067 | 3.737435e-65 | -8.615850e-47 |
| Msa0424330 | Msa0591800 | 0.823973 | 1.037769e-53 | -8.615850e-47 |
| Msa0424330 | Msa0594090 | 0.838626 | 2.571390e-57 | -8.615850e-47 |
| Msa0424330 | Msa0641250 | 0.806629 | 7.498546e-50 | -8.615850e-47 |
| Msa0424330 | Msa0669840 | 0.884278 | 2.199024e-71 | -8.615850e-47 |
| Msa0424330 | Msa0682360 | 0.803717 | 3.051091e-49 | -8.615850e-47 |
| Msa0424330 | Msa0709450 | 0.804050 | 2.602369e-49 | -8.615850e-47 |
| Msa0424330 | Msa0711320 | 0.810417 | 1.164546e-50 | -8.615850e-47 |
| Msa0424330 | Msa0725860 | 0.810323 | 1.220643e-50 | -8.615850e-47 |
| Msa0424330 | Msa0737190 | 0.802893 | 4.518750e-49 | -8.615850e-47 |
| Msa0424330 | Msa0739580 | 0.873861 | 1.059072e-67 | -8.615850e-47 |
| Msa0424330 | Msa0742180 | 0.805625 | 1.219422e-49 | -8.615850e-47 |
| Msa0424330 | Msa0751890 | 0.809390 | 1.937635e-50 | -8.615850e-47 |
| Msa0424330 | Msa0752840 | 0.830193 | 3.370270e-55 | -8.615850e-47 |
| Msa0424330 | Msa0764820 | 0.820471 | 6.742154e-53 | -8.615850e-47 |
| Msa0424330 | Msa0770290 | 0.842958 | 1.881084e-58 | -8.615850e-47 |
| Msa0424330 | Msa0782360 | 0.852539 | 4.321544e-61 | -8.615850e-47 |
| Msa0424330 | Msa0819890 | 0.813487 | 2.496493e-51 | -8.615850e-47 |
| Msa0424330 | Msa0823400 | 0.831023 | 2.111536e-55 | -8.615850e-47 |
| Msa0424330 | Msa0828830 | 0.813071 | 3.081400e-51 | -8.615850e-47 |
| Msa0424330 | Msa0831940 | 0.818589 | 1.811249e-52 | -8.615850e-47 |
| Msa0424330 | Msa0844560 | 0.801764 | 7.718749e-49 | -8.615850e-47 |
| Msa0424330 | Msa0849280 | 0.818462 | 1.935509e-52 | -8.615850e-47 |
| Msa0424330 | Msa0851020 | 0.823623 | 1.253749e-53 | -8.615850e-47 |
| Msa0424330 | Msa0856520 | 0.801524 | 8.645592e-49 | -8.615850e-47 |
| Msa0424330 | Msa0860280 | 0.871033 | 9.298485e-67 | -8.615850e-47 |
| Msa0424330 | Msa0867350 | 0.858393 | 8.497983e-63 | -8.615850e-47 |
| Msa0424330 | Msa0898730 | 0.864671 | 1.028122e-64 | -8.615850e-47 |
| Msa0424330 | Msa0916640 | 0.806531 | 7.862188e-50 | -8.615850e-47 |
| Msa0424330 | Msa0922750 | 0.805986 | 1.023996e-49 | -8.615850e-47 |
| Msa0424330 | Msa0927120 | 0.806035 | 1.000348e-49 | -8.615850e-47 |
| Msa0424330 | Msa0929870 | 0.868684 | 5.435836e-66 | -8.615850e-47 |
| Msa0424330 | Msa0944760 | 0.837993 | 3.743320e-57 | -8.615850e-47 |
| Msa0424330 | Msa0944880 | 0.826171 | 3.140687e-54 | -8.615850e-47 |
| Msa0424330 | Msa0946210 | 0.806122 | 9.587826e-50 | -8.615850e-47 |
| Msa0424330 | Msa0953540 | 0.809070 | 2.269353e-50 | -8.615850e-47 |
| Msa0424330 | Msa0961560 | 0.834000 | 3.859342e-56 | -8.615850e-47 |
| Msa0424330 | Msa0965310 | 0.811134 | 8.150837e-51 | -8.615850e-47 |
| Msa0424330 | Msa0979510 | 0.809977 | 1.448849e-50 | -8.615850e-47 |
| Msa0424330 | Msa0996270 | 0.834884 | 2.314729e-56 | -8.615850e-47 |
| Msa0424330 | Msa0999300 | 0.855241 | 7.201770e-62 | -8.615850e-47 |
| Msa0424330 | Msa0999340 | 0.818935 | 1.512071e-52 | -8.615850e-47 |
| Msa0424330 | Msa0999360 | 0.817309 | 3.525811e-52 | -8.615850e-47 |
| Msa0424330 | Msa0999390 | 0.800922 | 1.148276e-48 | -8.615850e-47 |
| Msa0424330 | Msa0999410 | 0.821688 | 3.534637e-53 | -8.615850e-47 |
| Msa0424330 | Msa1001890 | 0.820810 | 5.633981e-53 | -8.615850e-47 |
| Msa0424330 | Msa1037770 | 0.857047 | 2.130182e-62 | -8.615850e-47 |
| Msa0424330 | Msa1037890 | 0.888719 | 4.600546e-73 | -8.615850e-47 |
| Msa0424330 | Msa1037900 | 0.861058 | 1.338951e-63 | -8.615850e-47 |
| Msa0424330 | Msa1037910 | 0.854259 | 1.386132e-61 | -8.615850e-47 |
| Msa0424330 | Msa1047990 | 0.804951 | 1.687776e-49 | -8.615850e-47 |
| Msa0424330 | Msa1081570 | 0.805064 | 1.598791e-49 | -8.615850e-47 |
| Msa0424330 | Msa1084520 | 0.848697 | 5.196011e-60 | -8.615850e-47 |
| Msa0424330 | Msa1092020 | 0.822936 | 1.814119e-53 | -8.615850e-47 |
| Msa0424330 | Msa1096210 | 0.803566 | 3.278674e-49 | -8.615850e-47 |
| Msa0424330 | Msa1125810 | 0.821291 | 4.364416e-53 | -8.615850e-47 |
| Msa0424330 | Msa1127140 | 0.802624 | 5.135411e-49 | -8.615850e-47 |
| Msa0424330 | Msa1129950 | 0.825630 | 4.221675e-54 | -8.615850e-47 |
| Msa0424330 | Msa1129960 | 0.841892 | 3.606232e-58 | -8.615850e-47 |
| Msa0424330 | Msa1129970 | 0.839137 | 1.896932e-57 | -8.615850e-47 |
| Msa0424330 | Msa1130010 | 0.849581 | 2.949966e-60 | -8.615850e-47 |
| Msa0424330 | Msa1135380 | 0.834892 | 2.304718e-56 | -8.615850e-47 |
| Msa0424330 | Msa1145020 | 0.845688 | 3.473789e-59 | -8.615850e-47 |
| Msa0424330 | Msa1166400 | 0.800540 | 1.373757e-48 | -8.615850e-47 |
| Msa0424330 | Msa1169990 | 0.807230 | 5.593468e-50 | -8.615850e-47 |
| Msa0424330 | Msa1171310 | 0.836039 | 1.181689e-56 | -8.615850e-47 |
| Msa0424330 | Msa1201110 | 0.811806 | 5.822058e-51 | -8.615850e-47 |
| Msa0424330 | Msa1201160 | 0.852751 | 3.757642e-61 | -8.615850e-47 |
| Msa0424330 | Msa1228190 | 0.856694 | 2.704562e-62 | -8.615850e-47 |
| Msa0424330 | Msa1271260 | 0.826019 | 3.413100e-54 | -8.615850e-47 |
| Msa0424330 | Msa1294290 | 0.840924 | 6.486207e-58 | -8.615850e-47 |
| Msa0424330 | Msa1305510 | 0.864357 | 1.288599e-64 | -8.615850e-47 |
| Msa0424330 | Msa1378870 | 0.821216 | 4.541842e-53 | -8.615850e-47 |
| Msa0424330 | Msa1379970 | 0.841617 | 4.262345e-58 | -8.615850e-47 |
| Msa0424330 | Msa1389050 | 0.804627 | 1.973039e-49 | -8.615850e-47 |
| Msa0424330 | Msa1394890 | 0.853199 | 2.798361e-61 | -8.615850e-47 |
| Msa0424330 | Msa1406780 | 0.871827 | 5.077484e-67 | -8.615850e-47 |
| Msa0424330 | Msa1420060 | 0.843207 | 1.614814e-58 | -8.615850e-47 |
| Msa0424330 | Msa1421550 | 0.864186 | 1.456995e-64 | -8.615850e-47 |
| Msa0424330 | Msa1423460 | 0.843192 | 1.629746e-58 | -8.615850e-47 |
| Msa0424330 | Msa1431850 | 0.878175 | 3.474544e-69 | -8.615850e-47 |
| Msa0424330 | Msa1435480 | 0.814778 | 1.295212e-51 | -8.615850e-47 |
| Msa0424330 | Msa1449940 | 0.817052 | 4.027671e-52 | -8.615850e-47 |
| Msa0424330 | Msa1455320 | 0.861070 | 1.328223e-63 | -8.615850e-47 |
| Msa0424330 | Msa1458300 | 0.804239 | 2.376992e-49 | -8.615850e-47 |
| Msa0424330 | Msa1459530 | 0.838166 | 3.379938e-57 | -8.615850e-47 |
| Msa0424330 | Msa1461060 | 0.857040 | 2.139922e-62 | -8.615850e-47 |
| Msa0424330 | Msa1462530 | 0.824609 | 7.355712e-54 | -8.615850e-47 |
| Msa0239030 | Msa0424330 | 0.810043 | 1.402202e-50 | -8.615850e-47 |
| Msa0242540 | Msa0424330 | 0.829924 | 3.920051e-55 | -8.615850e-47 |
| Msa0252630 | Msa0424330 | 0.839683 | 1.368477e-57 | -8.615850e-47 |
| Msa0252770 | Msa0424330 | 0.855210 | 7.348355e-62 | -8.615850e-47 |
| Msa0276740 | Msa0424330 | 0.807188 | 5.711587e-50 | -8.615850e-47 |
| Msa0280750 | Msa0424330 | 0.819077 | 1.403450e-52 | -8.615850e-47 |
| Msa0289920 | Msa0424330 | 0.837596 | 4.735993e-57 | -8.615850e-47 |
| Msa0291330 | Msa0424330 | 0.823175 | 1.595548e-53 | -8.615850e-47 |
| Msa0298240 | Msa0424330 | 0.838401 | 2.939723e-57 | -8.615850e-47 |
| Msa0306120 | Msa0424330 | 0.857431 | 1.640500e-62 | -8.615850e-47 |
| Msa0316680 | Msa0424330 | 0.804188 | 2.434853e-49 | -8.615850e-47 |
| Msa0322830 | Msa0424330 | 0.802297 | 5.998254e-49 | -8.615850e-47 |
| Msa0322840 | Msa0424330 | 0.810035 | 1.408067e-50 | -8.615850e-47 |
| Msa0322860 | Msa0424330 | 0.808592 | 2.871023e-50 | -8.615850e-47 |
| Msa0329620 | Msa0424330 | 0.852691 | 3.908723e-61 | -8.615850e-47 |
| Msa0333700 | Msa0424330 | 0.820750 | 5.815370e-53 | -8.615850e-47 |
| Msa0340480 | Msa0424330 | 0.819626 | 1.052047e-52 | -8.615850e-47 |
| Msa0343660 | Msa0424330 | 0.816597 | 5.095704e-52 | -8.615850e-47 |
| Msa0344570 | Msa0424330 | 0.807761 | 4.316255e-50 | -8.615850e-47 |
| Msa0351770 | Msa0424330 | 0.842649 | 2.272547e-58 | -8.615850e-47 |
| Msa0359250 | Msa0424330 | 0.900564 | 6.454763e-78 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0424330 | MtrunA17_Chr3g0125981 | 83.243 | 370 | 56 | 1 | 1 | 364 | 1 | 370 | 0.0 | 653 |
| Msa0424330 | MtrunA17_Chr3g0126011 | 74.380 | 363 | 92 | 1 | 2 | 363 | 3 | 365 | 0.0 | 581 |
| Msa0424330 | MtrunA17_Chr3g0125991 | 74.105 | 363 | 93 | 1 | 2 | 363 | 3 | 365 | 0.0 | 577 |
| Msa0424330 | MtrunA17_Chr3g0125781 | 70.924 | 368 | 102 | 1 | 1 | 363 | 1 | 368 | 0.0 | 560 |
| Msa0424330 | MtrunA17_Chr1g0159321 | 72.829 | 357 | 93 | 2 | 9 | 362 | 33 | 388 | 0.0 | 544 |
| Msa0424330 | MtrunA17_Chr4g0045661 | 64.688 | 337 | 116 | 2 | 27 | 362 | 57 | 391 | 5.27e-165 | 466 |
| Msa0424330 | MtrunA17_Chr5g0406961 | 64.688 | 337 | 116 | 2 | 27 | 362 | 108 | 442 | 1.36e-164 | 467 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0424330 | AT1G43800.1 | 67.222 | 360 | 112 | 3 | 10 | 363 | 31 | 390 | 0.0 | 511 |
| Msa0424330 | AT3G02630.1 | 62.722 | 338 | 122 | 2 | 27 | 362 | 59 | 394 | 1.07e-159 | 453 |
| Msa0424330 | AT3G02610.2 | 58.981 | 373 | 141 | 5 | 1 | 362 | 40 | 411 | 1.65e-159 | 454 |
| Msa0424330 | AT3G02610.1 | 58.981 | 373 | 141 | 5 | 1 | 362 | 38 | 409 | 2.05e-159 | 453 |
| Msa0424330 | AT5G16230.1 | 59.563 | 366 | 137 | 6 | 6 | 362 | 36 | 399 | 1.93e-158 | 451 |
| Msa0424330 | AT2G43710.2 | 62.611 | 337 | 123 | 2 | 27 | 362 | 65 | 399 | 1.72e-157 | 448 |
| Msa0424330 | AT2G43710.1 | 62.611 | 337 | 123 | 2 | 27 | 362 | 65 | 399 | 2.33e-157 | 447 |
| Msa0424330 | AT3G02620.2 | 57.632 | 380 | 142 | 7 | 1 | 362 | 26 | 404 | 4.63e-157 | 447 |
| Msa0424330 | AT3G02620.1 | 57.632 | 380 | 142 | 7 | 1 | 362 | 23 | 401 | 5.19e-157 | 447 |
| Msa0424330 | AT5G16240.1 | 60.651 | 338 | 129 | 2 | 27 | 362 | 57 | 392 | 1.33e-153 | 438 |
| Msa0424330 | AT5G16230.2 | 62.654 | 324 | 116 | 4 | 43 | 362 | 1 | 323 | 3.83e-151 | 429 |
| Msa0424330 | AT3G02620.3 | 61.656 | 326 | 118 | 4 | 43 | 362 | 1 | 325 | 1.81e-148 | 422 |
Find 98 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGGCCTTTAGGTGGCATTT+TGG | 0.216719 | 3_2:+74531254 | None:intergenic |
| CATATCAATCATGGTTAAAT+AGG | 0.234910 | 3_2:-74530953 | Msa0424330:CDS |
| CTCTTGTAGCCTCCTAATCT+TGG | 0.305981 | 3_2:+74529960 | None:intergenic |
| GAGACATTGAGTGTGTCTTT+TGG | 0.306328 | 3_2:+74531210 | None:intergenic |
| CTTGAAAATTTCTTTCTTCT+CGG | 0.318913 | 3_2:+74531187 | None:intergenic |
| ATGGCAATGTGCACCCAATT+AGG | 0.331432 | 3_2:-74531281 | Msa0424330:CDS |
| CTTGATTGGACGATGGGGTT+TGG | 0.337060 | 3_2:-74530046 | Msa0424330:CDS |
| AATAGTTTGGAATTCTTGAT+TGG | 0.340998 | 3_2:-74530060 | Msa0424330:CDS |
| CCAGCATTCTTCCACGGGTT+TGG | 0.343592 | 3_2:+74531124 | None:intergenic |
| TTGTTTGTGGTGTAGGATAT+AGG | 0.348757 | 3_2:-74530438 | Msa0424330:intron |
| TTGAAAATTTCTTTCTTCTC+GGG | 0.360930 | 3_2:+74531188 | None:intergenic |
| ATTTAAGACCCAACTAAACT+TGG | 0.375496 | 3_2:+74529906 | None:intergenic |
| GGGCTGTATGGACACGCTCT+TGG | 0.379466 | 3_2:-74530887 | Msa0424330:CDS |
| ACCATCATGCATCAAGTGTC+CGG | 0.383908 | 3_2:+74530158 | None:intergenic |
| TTTAACCATGATTGATATGT+AGG | 0.392590 | 3_2:+74530957 | None:intergenic |
| TAGTGACTACATCAATAGTT+TGG | 0.398335 | 3_2:-74530073 | Msa0424330:CDS |
| TTTCAAGTCATTAGAGAGTT+GGG | 0.400750 | 3_2:-74531171 | Msa0424330:CDS |
| GCACCAATCCGTGGGCTGTA+TGG | 0.414955 | 3_2:-74530899 | Msa0424330:CDS |
| CCCGTGCTTGCGCGCATATG+TGG | 0.421061 | 3_2:-74530309 | Msa0424330:CDS |
| TGGGGTTTGGAGAAGCTAGA+AGG | 0.430673 | 3_2:-74530033 | Msa0424330:CDS |
| GTGGGATTGCACCCAAGATT+AGG | 0.432028 | 3_2:-74529972 | Msa0424330:CDS |
| ATTACTCATTATTTCTGCTA+TGG | 0.437217 | 3_2:+74530194 | None:intergenic |
| AGATGAAGCCCAAGTTTAGT+TGG | 0.441963 | 3_2:-74529915 | Msa0424330:CDS |
| GGAATTCTTGATTGGACGAT+GGG | 0.442137 | 3_2:-74530052 | Msa0424330:CDS |
| AAAACTACAAAATAATCATC+TGG | 0.449782 | 3_2:+74531011 | None:intergenic |
| AAGACTATCCAATACTTGAT+TGG | 0.452984 | 3_2:-74530783 | Msa0424330:CDS |
| CAAAACTTATCTCTATCTAT+CGG | 0.457872 | 3_2:-74530832 | Msa0424330:CDS |
| TCAATCATGGTTAAATAGGC+TGG | 0.460883 | 3_2:-74530949 | Msa0424330:CDS |
| ATCTCCATGTCTATTCTCTT+CGG | 0.464831 | 3_2:+74530860 | None:intergenic |
| CATGGTTAAATAGGCTGGAT+GGG | 0.476200 | 3_2:-74530944 | Msa0424330:CDS |
| TCTTGTAGCCTCCTAATCTT+GGG | 0.478217 | 3_2:+74529961 | None:intergenic |
| TCTGCAGTGGCACAACGTAT+TGG | 0.480314 | 3_2:-74530108 | Msa0424330:CDS |
| GCCACATATGCGCGCAAGCA+CGG | 0.480589 | 3_2:+74530308 | None:intergenic |
| TCTGACGATAATGATGGATC+TGG | 0.483631 | 3_2:+74531083 | None:intergenic |
| ACACTTGATGCATGATGGTC+AGG | 0.485164 | 3_2:-74530154 | Msa0424330:CDS |
| CCACATATGCGCGCAAGCAC+GGG | 0.485901 | 3_2:+74530309 | None:intergenic |
| ATGGATGTCATCGTCTCAGT+GGG | 0.494308 | 3_2:+74530213 | None:intergenic |
| GCATACACAAAGGTCTTGTA+CGG | 0.494338 | 3_2:+74530402 | None:intergenic |
| AAAACTTATCTCTATCTATC+GGG | 0.495212 | 3_2:-74530831 | Msa0424330:CDS |
| TTTGGGAAGGGGCCTTTAGG+TGG | 0.495405 | 3_2:+74531246 | None:intergenic |
| GATGAAGCCCAAGTTTAGTT+GGG | 0.504326 | 3_2:-74529914 | Msa0424330:CDS |
| GGCTGCCAGCATTCTTCCAC+GGG | 0.506773 | 3_2:+74531119 | None:intergenic |
| ATCCAATACTTGATTGGAGC+TGG | 0.507157 | 3_2:-74530777 | Msa0424330:CDS |
| GATGGGGTTGCAGATGAGAC+TGG | 0.508475 | 3_2:-74530927 | Msa0424330:CDS |
| TCATGGTTAAATAGGCTGGA+TGG | 0.509673 | 3_2:-74530945 | Msa0424330:CDS |
| TTATCTCTATCTATCGGGTC+GGG | 0.520159 | 3_2:-74530826 | Msa0424330:CDS |
| TGGCTGCCAGCATTCTTCCA+CGG | 0.522862 | 3_2:+74531118 | None:intergenic |
| TGCCAGCTCCAATCAAGTAT+TGG | 0.523085 | 3_2:+74530775 | None:intergenic |
| CATTGCCTACATATCAATCA+TGG | 0.523943 | 3_2:-74530962 | Msa0424330:CDS |
| TTTAAGACCCAACTAAACTT+GGG | 0.524188 | 3_2:+74529907 | None:intergenic |
| CTTATCTCTATCTATCGGGT+CGG | 0.528634 | 3_2:-74530827 | Msa0424330:CDS |
| AGTAATAACATAACGATGCC+CGG | 0.531912 | 3_2:-74530177 | Msa0424330:CDS |
| CTTCAATCATTTCTCTGCAG+TGG | 0.532097 | 3_2:-74530121 | Msa0424330:CDS |
| ACCACCAAAATGCCACCTAA+AGG | 0.539344 | 3_2:-74531258 | Msa0424330:CDS |
| TCTTCCACGGGTTTGGCTAG+TGG | 0.539347 | 3_2:+74531131 | None:intergenic |
| TTGCTAGCAAACAATGATGA+TGG | 0.539995 | 3_2:-74531300 | Msa0424330:exon |
| AAAAGTGGCTCGCTCTTGAA+AGG | 0.540037 | 3_2:+74530377 | None:intergenic |
| CGTGCACAGGAGATAGTATG+TGG | 0.543167 | 3_2:-74529991 | Msa0424330:CDS |
| CCAAACCCGTGGAAGAATGC+TGG | 0.544399 | 3_2:-74531124 | Msa0424330:CDS |
| CCATCATGCATCAAGTGTCC+GGG | 0.545387 | 3_2:+74530159 | None:intergenic |
| AACTCATCTGACGATAATGA+TGG | 0.549146 | 3_2:+74531077 | None:intergenic |
| TGTCCATACAGCCCACGGAT+TGG | 0.549896 | 3_2:+74530896 | None:intergenic |
| TTAGCACTTTGACTTTCACT+TGG | 0.560683 | 3_2:+74529873 | None:intergenic |
| TAGCATGAGCATGCTAGCTA+AGG | 0.570725 | 3_2:-74530343 | Msa0424330:CDS |
| ATGTTAATGAGCAAAATTTG+AGG | 0.579659 | 3_2:+74529796 | None:intergenic |
| TCCTCTCATATGCAATCTCA+TGG | 0.582401 | 3_2:+74530262 | None:intergenic |
| TGGAATTCTTGATTGGACGA+TGG | 0.586382 | 3_2:-74530053 | Msa0424330:CDS |
| GCTAGAAGGTTTAACAAGCG+AGG | 0.587418 | 3_2:-74530019 | Msa0424330:CDS |
| GAGAAATGATTGAAGAGATG+TGG | 0.589359 | 3_2:+74530129 | None:intergenic |
| AGAAATGATTGAAGAGATGT+GGG | 0.590976 | 3_2:+74530130 | None:intergenic |
| TGTGGAGAAGCTTCTAGAAG+TGG | 0.591080 | 3_2:-74530238 | Msa0424330:CDS |
| CCCGGACACTTGATGCATGA+TGG | 0.594778 | 3_2:-74530159 | Msa0424330:CDS |
| ATACTTGATTGGAGCTGGCA+TGG | 0.595623 | 3_2:-74530772 | Msa0424330:intron |
| GCTACCGTCTGACAGAAAAG+TGG | 0.598273 | 3_2:+74530362 | None:intergenic |
| CTGGTTCAAGCACCAATCCG+TGG | 0.603080 | 3_2:-74530908 | Msa0424330:CDS |
| GGGTCGGGTTGACATGCTCA+TGG | 0.603142 | 3_2:-74530811 | Msa0424330:CDS |
| AAGCGAGGGAAAACGTGCAC+AGG | 0.604155 | 3_2:-74530004 | Msa0424330:CDS |
| ATGGTTAAATAGGCTGGATG+GGG | 0.608274 | 3_2:-74530943 | Msa0424330:CDS |
| AATCTCATGGCGCTTCTCAT+CGG | 0.610232 | 3_2:+74530275 | None:intergenic |
| TATGGATGTCATCGTCTCAG+TGG | 0.611032 | 3_2:+74530212 | None:intergenic |
| GATTGCATATGAGAGGATTG+TGG | 0.611094 | 3_2:-74530256 | Msa0424330:CDS |
| GGATTGCACCCAAGATTAGG+AGG | 0.611312 | 3_2:-74529969 | Msa0424330:CDS |
| GAGCGTGTCCATACAGCCCA+CGG | 0.625608 | 3_2:+74530891 | None:intergenic |
| CTAGAAGGTTTAACAAGCGA+GGG | 0.625610 | 3_2:-74530018 | Msa0424330:CDS |
| TGGTTCAAGCACCAATCCGT+GGG | 0.630954 | 3_2:-74530907 | Msa0424330:CDS |
| CATACACAAAGGTCTTGTAC+GGG | 0.631913 | 3_2:+74530403 | None:intergenic |
| GCCATGAGATTGCATATGAG+AGG | 0.633509 | 3_2:-74530263 | Msa0424330:CDS |
| TGAGTTCGTCGATCAAGTCA+AGG | 0.640040 | 3_2:-74531060 | Msa0424330:CDS |
| AGCATGCTAGCTAAGGAGAG+AGG | 0.659826 | 3_2:-74530336 | Msa0424330:CDS |
| GAATTCTTGATTGGACGATG+GGG | 0.680323 | 3_2:-74530051 | Msa0424330:CDS |
| ACTGCCGAAGAGAATAGACA+TGG | 0.683343 | 3_2:-74530864 | Msa0424330:CDS |
| TTGAAAGGCTGCATACACAA+AGG | 0.689402 | 3_2:+74530392 | None:intergenic |
| GGATCTGGCAACAAATCATG+TGG | 0.701954 | 3_2:+74531098 | None:intergenic |
| GCTGCCACTAGCCAAACCCG+TGG | 0.706140 | 3_2:-74531135 | Msa0424330:CDS |
| GTGCACAGGAGATAGTATGT+GGG | 0.715529 | 3_2:-74529990 | Msa0424330:CDS |
| ATAATCATCTGGAAGCTCAG+CGG | 0.717870 | 3_2:+74531022 | None:intergenic |
| TGGATGTCATCGTCTCAGTG+GGG | 0.735788 | 3_2:+74530214 | None:intergenic |
| AGTGGGTGACATGATCACTG+AGG | 0.758505 | 3_2:-74530988 | Msa0424330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAATACACATGTATTAT+CGG | + | chr3_2:74530650-74530669 | None:intergenic | 15.0% |
| !! | ATTTAATACACATGTATTAT+CGG | + | chr3_2:74530650-74530669 | None:intergenic | 15.0% |
| !! | AAAACTACAAAATAATCATC+TGG | + | chr3_2:74530115-74530134 | None:intergenic | 20.0% |
| !!! | TGATTATTTTGTAGTTTTAG+TGG | - | chr3_2:74530117-74530136 | Msa0424330:CDS | 20.0% |
| !!! | GATTATTTTGTAGTTTTAGT+GGG | - | chr3_2:74530118-74530137 | Msa0424330:CDS | 20.0% |
| !! | ATAGAATTCACTAAATCATT+TGG | - | chr3_2:74530557-74530576 | Msa0424330:intron | 20.0% |
| !! | AAAACTACAAAATAATCATC+TGG | + | chr3_2:74530115-74530134 | None:intergenic | 20.0% |
| !!! | TGATTATTTTGTAGTTTTAG+TGG | - | chr3_2:74530117-74530136 | Msa0424330:CDS | 20.0% |
| !!! | GATTATTTTGTAGTTTTAGT+GGG | - | chr3_2:74530118-74530137 | Msa0424330:CDS | 20.0% |
| !! | ATAGAATTCACTAAATCATT+TGG | - | chr3_2:74530557-74530576 | Msa0424330:intron | 20.0% |
| ! | TTGAAAATTTCTTTCTTCTC+GGG | + | chr3_2:74529938-74529957 | None:intergenic | 25.0% |
| ! | CTTGAAAATTTCTTTCTTCT+CGG | + | chr3_2:74529939-74529958 | None:intergenic | 25.0% |
| ! | TTTAACCATGATTGATATGT+AGG | + | chr3_2:74530169-74530188 | None:intergenic | 25.0% |
| ! | CATATCAATCATGGTTAAAT+AGG | - | chr3_2:74530170-74530189 | Msa0424330:CDS | 25.0% |
| ! | CAAAACTTATCTCTATCTAT+CGG | - | chr3_2:74530291-74530310 | Msa0424330:CDS | 25.0% |
| ! | AAAACTTATCTCTATCTATC+GGG | - | chr3_2:74530292-74530311 | Msa0424330:CDS | 25.0% |
| ! | TTCGAACTAATCAATTTACA+TGG | - | chr3_2:74530485-74530504 | Msa0424330:intron | 25.0% |
| !!! | ATTACTCATTATTTCTGCTA+TGG | + | chr3_2:74530932-74530951 | None:intergenic | 25.0% |
| !! | AATAGTTTGGAATTCTTGAT+TGG | - | chr3_2:74531063-74531082 | Msa0424330:CDS | 25.0% |
| ! | AATGGTACTATGAAAAAACA+AGG | - | chr3_2:74531289-74531308 | Msa0424330:CDS | 25.0% |
| ! | TTGAAAATTTCTTTCTTCTC+GGG | + | chr3_2:74529938-74529957 | None:intergenic | 25.0% |
| ! | CTTGAAAATTTCTTTCTTCT+CGG | + | chr3_2:74529939-74529958 | None:intergenic | 25.0% |
| ! | TTTAACCATGATTGATATGT+AGG | + | chr3_2:74530169-74530188 | None:intergenic | 25.0% |
| ! | CATATCAATCATGGTTAAAT+AGG | - | chr3_2:74530170-74530189 | Msa0424330:CDS | 25.0% |
| ! | CAAAACTTATCTCTATCTAT+CGG | - | chr3_2:74530291-74530310 | Msa0424330:CDS | 25.0% |
| ! | AAAACTTATCTCTATCTATC+GGG | - | chr3_2:74530292-74530311 | Msa0424330:CDS | 25.0% |
| ! | TTCGAACTAATCAATTTACA+TGG | - | chr3_2:74530485-74530504 | Msa0424330:intron | 25.0% |
| !!! | ATTACTCATTATTTCTGCTA+TGG | + | chr3_2:74530932-74530951 | None:intergenic | 25.0% |
| !! | AATAGTTTGGAATTCTTGAT+TGG | - | chr3_2:74531063-74531082 | Msa0424330:CDS | 25.0% |
| ! | AATGGTACTATGAAAAAACA+AGG | - | chr3_2:74531289-74531308 | Msa0424330:CDS | 25.0% |
| !! | ATTTTAGCACTTTTTGGGAA+GGG | + | chr3_2:74529892-74529911 | None:intergenic | 30.0% |
| !! | TTGGGATTTTAGCACTTTTT+GGG | + | chr3_2:74529897-74529916 | None:intergenic | 30.0% |
| !! | TTTGGGATTTTAGCACTTTT+TGG | + | chr3_2:74529898-74529917 | None:intergenic | 30.0% |
| !!! | TTTTCAAGTCATTAGAGAGT+TGG | - | chr3_2:74529951-74529970 | Msa0424330:CDS | 30.0% |
| ! | TTTCAAGTCATTAGAGAGTT+GGG | - | chr3_2:74529952-74529971 | Msa0424330:CDS | 30.0% |
| AAGACTATCCAATACTTGAT+TGG | - | chr3_2:74530340-74530359 | Msa0424330:CDS | 30.0% | |
| TTTAGTGAATTCTATGTGAG+TGG | + | chr3_2:74530552-74530571 | None:intergenic | 30.0% | |
| TCAAACTAATCCATTGTTTG+TGG | - | chr3_2:74530672-74530691 | Msa0424330:intron | 30.0% | |
| AGAAATGATTGAAGAGATGT+GGG | + | chr3_2:74530996-74531015 | None:intergenic | 30.0% | |
| TAGTGACTACATCAATAGTT+TGG | - | chr3_2:74531050-74531069 | Msa0424330:CDS | 30.0% | |
| ! | TTTAAGACCCAACTAAACTT+GGG | + | chr3_2:74531219-74531238 | None:intergenic | 30.0% |
| ! | ATTTAAGACCCAACTAAACT+TGG | + | chr3_2:74531220-74531239 | None:intergenic | 30.0% |
| !! | ATTTTAGCACTTTTTGGGAA+GGG | + | chr3_2:74529892-74529911 | None:intergenic | 30.0% |
| !! | TTGGGATTTTAGCACTTTTT+GGG | + | chr3_2:74529897-74529916 | None:intergenic | 30.0% |
| !! | TTTGGGATTTTAGCACTTTT+TGG | + | chr3_2:74529898-74529917 | None:intergenic | 30.0% |
| !!! | TTTTCAAGTCATTAGAGAGT+TGG | - | chr3_2:74529951-74529970 | Msa0424330:CDS | 30.0% |
| ! | TTTCAAGTCATTAGAGAGTT+GGG | - | chr3_2:74529952-74529971 | Msa0424330:CDS | 30.0% |
| AAGACTATCCAATACTTGAT+TGG | - | chr3_2:74530340-74530359 | Msa0424330:CDS | 30.0% | |
| TTTAGTGAATTCTATGTGAG+TGG | + | chr3_2:74530552-74530571 | None:intergenic | 30.0% | |
| TCAAACTAATCCATTGTTTG+TGG | - | chr3_2:74530672-74530691 | Msa0424330:intron | 30.0% | |
| AGAAATGATTGAAGAGATGT+GGG | + | chr3_2:74530996-74531015 | None:intergenic | 30.0% | |
| TAGTGACTACATCAATAGTT+TGG | - | chr3_2:74531050-74531069 | Msa0424330:CDS | 30.0% | |
| ! | TTTAAGACCCAACTAAACTT+GGG | + | chr3_2:74531219-74531238 | None:intergenic | 30.0% |
| ! | ATTTAAGACCCAACTAAACT+TGG | + | chr3_2:74531220-74531239 | None:intergenic | 30.0% |
| TTGCTAGCAAACAATGATGA+TGG | - | chr3_2:74529823-74529842 | Msa0424330:three_prime_UTR | 35.0% | |
| !! | TTTTAGCACTTTTTGGGAAG+GGG | + | chr3_2:74529891-74529910 | None:intergenic | 35.0% |
| !! | GATTTTAGCACTTTTTGGGA+AGG | + | chr3_2:74529893-74529912 | None:intergenic | 35.0% |
| ! | AGACATTGAGTGTGTCTTTT+GGG | + | chr3_2:74529915-74529934 | None:intergenic | 35.0% |
| AACTCATCTGACGATAATGA+TGG | + | chr3_2:74530049-74530068 | None:intergenic | 35.0% | |
| CATTGCCTACATATCAATCA+TGG | - | chr3_2:74530161-74530180 | Msa0424330:CDS | 35.0% | |
| TCAATCATGGTTAAATAGGC+TGG | - | chr3_2:74530174-74530193 | Msa0424330:CDS | 35.0% | |
| ATCTCCATGTCTATTCTCTT+CGG | + | chr3_2:74530266-74530285 | None:intergenic | 35.0% | |
| AAGACCAGAGTTATGGTAAA+AGG | + | chr3_2:74530466-74530485 | None:intergenic | 35.0% | |
| AAAGAGAGAAAGTGAGGAAA+AGG | + | chr3_2:74530519-74530538 | None:intergenic | 35.0% | |
| TGGATAAAAGAGAGAAAGTG+AGG | + | chr3_2:74530525-74530544 | None:intergenic | 35.0% | |
| TAATCCATTGTTTGTGGTGT+AGG | - | chr3_2:74530678-74530697 | Msa0424330:intron | 35.0% | |
| ATATCCTACACCACAAACAA+TGG | + | chr3_2:74530685-74530704 | None:intergenic | 35.0% | |
| TTGTTTGTGGTGTAGGATAT+AGG | - | chr3_2:74530685-74530704 | Msa0424330:intron | 35.0% | |
| AGTAATAACATAACGATGCC+CGG | - | chr3_2:74530946-74530965 | Msa0424330:CDS | 35.0% | |
| GAGAAATGATTGAAGAGATG+TGG | + | chr3_2:74530997-74531016 | None:intergenic | 35.0% | |
| ! | TTAGCACTTTGACTTTCACT+TGG | + | chr3_2:74531253-74531272 | None:intergenic | 35.0% |
| TTGCTAGCAAACAATGATGA+TGG | - | chr3_2:74529823-74529842 | Msa0424330:three_prime_UTR | 35.0% | |
| !! | TTTTAGCACTTTTTGGGAAG+GGG | + | chr3_2:74529891-74529910 | None:intergenic | 35.0% |
| !! | GATTTTAGCACTTTTTGGGA+AGG | + | chr3_2:74529893-74529912 | None:intergenic | 35.0% |
| ! | AGACATTGAGTGTGTCTTTT+GGG | + | chr3_2:74529915-74529934 | None:intergenic | 35.0% |
| AACTCATCTGACGATAATGA+TGG | + | chr3_2:74530049-74530068 | None:intergenic | 35.0% | |
| CATTGCCTACATATCAATCA+TGG | - | chr3_2:74530161-74530180 | Msa0424330:CDS | 35.0% | |
| TCAATCATGGTTAAATAGGC+TGG | - | chr3_2:74530174-74530193 | Msa0424330:CDS | 35.0% | |
| ATCTCCATGTCTATTCTCTT+CGG | + | chr3_2:74530266-74530285 | None:intergenic | 35.0% | |
| AAGACCAGAGTTATGGTAAA+AGG | + | chr3_2:74530466-74530485 | None:intergenic | 35.0% | |
| AAAGAGAGAAAGTGAGGAAA+AGG | + | chr3_2:74530519-74530538 | None:intergenic | 35.0% | |
| TGGATAAAAGAGAGAAAGTG+AGG | + | chr3_2:74530525-74530544 | None:intergenic | 35.0% | |
| TAATCCATTGTTTGTGGTGT+AGG | - | chr3_2:74530678-74530697 | Msa0424330:intron | 35.0% | |
| ATATCCTACACCACAAACAA+TGG | + | chr3_2:74530685-74530704 | None:intergenic | 35.0% | |
| TTGTTTGTGGTGTAGGATAT+AGG | - | chr3_2:74530685-74530704 | Msa0424330:intron | 35.0% | |
| AGTAATAACATAACGATGCC+CGG | - | chr3_2:74530946-74530965 | Msa0424330:CDS | 35.0% | |
| GAGAAATGATTGAAGAGATG+TGG | + | chr3_2:74530997-74531016 | None:intergenic | 35.0% | |
| ! | TTAGCACTTTGACTTTCACT+TGG | + | chr3_2:74531253-74531272 | None:intergenic | 35.0% |
| !! | GCATTTTGGTGGTCCTAATT+GGG | + | chr3_2:74529858-74529877 | None:intergenic | 40.0% |
| ! | GAGACATTGAGTGTGTCTTT+TGG | + | chr3_2:74529916-74529935 | None:intergenic | 40.0% |
| !! | TCTGACGATAATGATGGATC+TGG | + | chr3_2:74530043-74530062 | None:intergenic | 40.0% |
| ATAATCATCTGGAAGCTCAG+CGG | + | chr3_2:74530104-74530123 | None:intergenic | 40.0% | |
| TCATGGTTAAATAGGCTGGA+TGG | - | chr3_2:74530178-74530197 | Msa0424330:CDS | 40.0% | |
| CATGGTTAAATAGGCTGGAT+GGG | - | chr3_2:74530179-74530198 | Msa0424330:CDS | 40.0% | |
| ATGGTTAAATAGGCTGGATG+GGG | - | chr3_2:74530180-74530199 | Msa0424330:CDS | 40.0% | |
| CTTATCTCTATCTATCGGGT+CGG | - | chr3_2:74530296-74530315 | Msa0424330:CDS | 40.0% | |
| TTATCTCTATCTATCGGGTC+GGG | - | chr3_2:74530297-74530316 | Msa0424330:CDS | 40.0% | |
| ATCCAATACTTGATTGGAGC+TGG | - | chr3_2:74530346-74530365 | Msa0424330:CDS | 40.0% | |
| ! | GTGGTGTTTTGTCTGCATTA+TGG | + | chr3_2:74530442-74530461 | None:intergenic | 40.0% |
| CAGAGTTATGGTAAAAGGTG+TGG | + | chr3_2:74530461-74530480 | None:intergenic | 40.0% | |
| ! | CACACCTTTTACCATAACTC+TGG | - | chr3_2:74530459-74530478 | Msa0424330:intron | 40.0% |
| AGTTCGAAAGACCAGAGTTA+TGG | + | chr3_2:74530473-74530492 | None:intergenic | 40.0% | |
| AATTCTATGTGAGTGGAGAG+TGG | + | chr3_2:74530545-74530564 | None:intergenic | 40.0% | |
| ! | CATACACAAAGGTCTTGTAC+GGG | + | chr3_2:74530723-74530742 | None:intergenic | 40.0% |
| ! | GCATACACAAAGGTCTTGTA+CGG | + | chr3_2:74530724-74530743 | None:intergenic | 40.0% |
| TTGAAAGGCTGCATACACAA+AGG | + | chr3_2:74530734-74530753 | None:intergenic | 40.0% | |
| TCCTCTCATATGCAATCTCA+TGG | + | chr3_2:74530864-74530883 | None:intergenic | 40.0% | |
| GATTGCATATGAGAGGATTG+TGG | - | chr3_2:74530867-74530886 | Msa0424330:CDS | 40.0% | |
| CTTCAATCATTTCTCTGCAG+TGG | - | chr3_2:74531002-74531021 | Msa0424330:CDS | 40.0% | |
| TGGAATTCTTGATTGGACGA+TGG | - | chr3_2:74531070-74531089 | Msa0424330:CDS | 40.0% | |
| GGAATTCTTGATTGGACGAT+GGG | - | chr3_2:74531071-74531090 | Msa0424330:CDS | 40.0% | |
| GAATTCTTGATTGGACGATG+GGG | - | chr3_2:74531072-74531091 | Msa0424330:CDS | 40.0% | |
| CTAGAAGGTTTAACAAGCGA+GGG | - | chr3_2:74531105-74531124 | Msa0424330:CDS | 40.0% | |
| TCTTGTAGCCTCCTAATCTT+GGG | + | chr3_2:74531165-74531184 | None:intergenic | 40.0% | |
| AGATGAAGCCCAAGTTTAGT+TGG | - | chr3_2:74531208-74531227 | Msa0424330:CDS | 40.0% | |
| GATGAAGCCCAAGTTTAGTT+GGG | - | chr3_2:74531209-74531228 | Msa0424330:CDS | 40.0% | |
| !! | GCATTTTGGTGGTCCTAATT+GGG | + | chr3_2:74529858-74529877 | None:intergenic | 40.0% |
| ! | GAGACATTGAGTGTGTCTTT+TGG | + | chr3_2:74529916-74529935 | None:intergenic | 40.0% |
| !! | TCTGACGATAATGATGGATC+TGG | + | chr3_2:74530043-74530062 | None:intergenic | 40.0% |
| ATAATCATCTGGAAGCTCAG+CGG | + | chr3_2:74530104-74530123 | None:intergenic | 40.0% | |
| TCATGGTTAAATAGGCTGGA+TGG | - | chr3_2:74530178-74530197 | Msa0424330:CDS | 40.0% | |
| CATGGTTAAATAGGCTGGAT+GGG | - | chr3_2:74530179-74530198 | Msa0424330:CDS | 40.0% | |
| ATGGTTAAATAGGCTGGATG+GGG | - | chr3_2:74530180-74530199 | Msa0424330:CDS | 40.0% | |
| CTTATCTCTATCTATCGGGT+CGG | - | chr3_2:74530296-74530315 | Msa0424330:CDS | 40.0% | |
| TTATCTCTATCTATCGGGTC+GGG | - | chr3_2:74530297-74530316 | Msa0424330:CDS | 40.0% | |
| ATCCAATACTTGATTGGAGC+TGG | - | chr3_2:74530346-74530365 | Msa0424330:CDS | 40.0% | |
| ! | GTGGTGTTTTGTCTGCATTA+TGG | + | chr3_2:74530442-74530461 | None:intergenic | 40.0% |
| CAGAGTTATGGTAAAAGGTG+TGG | + | chr3_2:74530461-74530480 | None:intergenic | 40.0% | |
| ! | CACACCTTTTACCATAACTC+TGG | - | chr3_2:74530459-74530478 | Msa0424330:intron | 40.0% |
| AGTTCGAAAGACCAGAGTTA+TGG | + | chr3_2:74530473-74530492 | None:intergenic | 40.0% | |
| AATTCTATGTGAGTGGAGAG+TGG | + | chr3_2:74530545-74530564 | None:intergenic | 40.0% | |
| ! | CATACACAAAGGTCTTGTAC+GGG | + | chr3_2:74530723-74530742 | None:intergenic | 40.0% |
| ! | GCATACACAAAGGTCTTGTA+CGG | + | chr3_2:74530724-74530743 | None:intergenic | 40.0% |
| TTGAAAGGCTGCATACACAA+AGG | + | chr3_2:74530734-74530753 | None:intergenic | 40.0% | |
| TCCTCTCATATGCAATCTCA+TGG | + | chr3_2:74530864-74530883 | None:intergenic | 40.0% | |
| GATTGCATATGAGAGGATTG+TGG | - | chr3_2:74530867-74530886 | Msa0424330:CDS | 40.0% | |
| CTTCAATCATTTCTCTGCAG+TGG | - | chr3_2:74531002-74531021 | Msa0424330:CDS | 40.0% | |
| TGGAATTCTTGATTGGACGA+TGG | - | chr3_2:74531070-74531089 | Msa0424330:CDS | 40.0% | |
| GGAATTCTTGATTGGACGAT+GGG | - | chr3_2:74531071-74531090 | Msa0424330:CDS | 40.0% | |
| GAATTCTTGATTGGACGATG+GGG | - | chr3_2:74531072-74531091 | Msa0424330:CDS | 40.0% | |
| CTAGAAGGTTTAACAAGCGA+GGG | - | chr3_2:74531105-74531124 | Msa0424330:CDS | 40.0% | |
| TCTTGTAGCCTCCTAATCTT+GGG | + | chr3_2:74531165-74531184 | None:intergenic | 40.0% | |
| AGATGAAGCCCAAGTTTAGT+TGG | - | chr3_2:74531208-74531227 | Msa0424330:CDS | 40.0% | |
| GATGAAGCCCAAGTTTAGTT+GGG | - | chr3_2:74531209-74531228 | Msa0424330:CDS | 40.0% | |
| ATGGCAATGTGCACCCAATT+AGG | - | chr3_2:74529842-74529861 | Msa0424330:three_prime_UTR | 45.0% | |
| !! | GGCATTTTGGTGGTCCTAAT+TGG | + | chr3_2:74529859-74529878 | None:intergenic | 45.0% |
| ACCACCAAAATGCCACCTAA+AGG | - | chr3_2:74529865-74529884 | Msa0424330:three_prime_UTR | 45.0% | |
| GGATCTGGCAACAAATCATG+TGG | + | chr3_2:74530028-74530047 | None:intergenic | 45.0% | |
| TGAGTTCGTCGATCAAGTCA+AGG | - | chr3_2:74530063-74530082 | Msa0424330:CDS | 45.0% | |
| ACTGCCGAAGAGAATAGACA+TGG | - | chr3_2:74530259-74530278 | Msa0424330:CDS | 45.0% | |
| TGCCAGCTCCAATCAAGTAT+TGG | + | chr3_2:74530351-74530370 | None:intergenic | 45.0% | |
| ATACTTGATTGGAGCTGGCA+TGG | - | chr3_2:74530351-74530370 | Msa0424330:CDS | 45.0% | |
| AAAAGTGGCTCGCTCTTGAA+AGG | + | chr3_2:74530749-74530768 | None:intergenic | 45.0% | |
| TAGCATGAGCATGCTAGCTA+AGG | - | chr3_2:74530780-74530799 | Msa0424330:CDS | 45.0% | |
| AATCTCATGGCGCTTCTCAT+CGG | + | chr3_2:74530851-74530870 | None:intergenic | 45.0% | |
| GCCATGAGATTGCATATGAG+AGG | - | chr3_2:74530860-74530879 | Msa0424330:CDS | 45.0% | |
| ! | TGTGGAGAAGCTTCTAGAAG+TGG | - | chr3_2:74530885-74530904 | Msa0424330:CDS | 45.0% |
| ATGGATGTCATCGTCTCAGT+GGG | + | chr3_2:74530913-74530932 | None:intergenic | 45.0% | |
| TATGGATGTCATCGTCTCAG+TGG | + | chr3_2:74530914-74530933 | None:intergenic | 45.0% | |
| ACCATCATGCATCAAGTGTC+CGG | + | chr3_2:74530968-74530987 | None:intergenic | 45.0% | |
| ACACTTGATGCATGATGGTC+AGG | - | chr3_2:74530969-74530988 | Msa0424330:CDS | 45.0% | |
| GCTAGAAGGTTTAACAAGCG+AGG | - | chr3_2:74531104-74531123 | Msa0424330:CDS | 45.0% | |
| GTGCACAGGAGATAGTATGT+GGG | - | chr3_2:74531133-74531152 | Msa0424330:CDS | 45.0% | |
| CTCTTGTAGCCTCCTAATCT+TGG | + | chr3_2:74531166-74531185 | None:intergenic | 45.0% | |
| ATGGCAATGTGCACCCAATT+AGG | - | chr3_2:74529842-74529861 | Msa0424330:three_prime_UTR | 45.0% | |
| !! | GGCATTTTGGTGGTCCTAAT+TGG | + | chr3_2:74529859-74529878 | None:intergenic | 45.0% |
| ACCACCAAAATGCCACCTAA+AGG | - | chr3_2:74529865-74529884 | Msa0424330:three_prime_UTR | 45.0% | |
| GGATCTGGCAACAAATCATG+TGG | + | chr3_2:74530028-74530047 | None:intergenic | 45.0% | |
| TGAGTTCGTCGATCAAGTCA+AGG | - | chr3_2:74530063-74530082 | Msa0424330:CDS | 45.0% | |
| ACTGCCGAAGAGAATAGACA+TGG | - | chr3_2:74530259-74530278 | Msa0424330:CDS | 45.0% | |
| TGCCAGCTCCAATCAAGTAT+TGG | + | chr3_2:74530351-74530370 | None:intergenic | 45.0% | |
| ATACTTGATTGGAGCTGGCA+TGG | - | chr3_2:74530351-74530370 | Msa0424330:CDS | 45.0% | |
| AAAAGTGGCTCGCTCTTGAA+AGG | + | chr3_2:74530749-74530768 | None:intergenic | 45.0% | |
| TAGCATGAGCATGCTAGCTA+AGG | - | chr3_2:74530780-74530799 | Msa0424330:CDS | 45.0% | |
| AATCTCATGGCGCTTCTCAT+CGG | + | chr3_2:74530851-74530870 | None:intergenic | 45.0% | |
| GCCATGAGATTGCATATGAG+AGG | - | chr3_2:74530860-74530879 | Msa0424330:CDS | 45.0% | |
| ! | TGTGGAGAAGCTTCTAGAAG+TGG | - | chr3_2:74530885-74530904 | Msa0424330:CDS | 45.0% |
| ATGGATGTCATCGTCTCAGT+GGG | + | chr3_2:74530913-74530932 | None:intergenic | 45.0% | |
| TATGGATGTCATCGTCTCAG+TGG | + | chr3_2:74530914-74530933 | None:intergenic | 45.0% | |
| ACCATCATGCATCAAGTGTC+CGG | + | chr3_2:74530968-74530987 | None:intergenic | 45.0% | |
| ACACTTGATGCATGATGGTC+AGG | - | chr3_2:74530969-74530988 | Msa0424330:CDS | 45.0% | |
| GCTAGAAGGTTTAACAAGCG+AGG | - | chr3_2:74531104-74531123 | Msa0424330:CDS | 45.0% | |
| GTGCACAGGAGATAGTATGT+GGG | - | chr3_2:74531133-74531152 | Msa0424330:CDS | 45.0% | |
| CTCTTGTAGCCTCCTAATCT+TGG | + | chr3_2:74531166-74531185 | None:intergenic | 45.0% | |
| !! | AAAAAATTTCAAAAAAAAAA+TGG | - | chr3_2:74531271-74531290 | Msa0424330:CDS | 5.0% |
| !! | AAAAAATTTCAAAAAAAAAA+TGG | - | chr3_2:74531271-74531290 | Msa0424330:CDS | 5.0% |
| ! | GCCTTTAGGTGGCATTTTGG+TGG | + | chr3_2:74529869-74529888 | None:intergenic | 50.0% |
| !! | CTTTTTGGGAAGGGGCCTTT+AGG | + | chr3_2:74529883-74529902 | None:intergenic | 50.0% |
| AGTGGGTGACATGATCACTG+AGG | - | chr3_2:74530135-74530154 | Msa0424330:CDS | 50.0% | |
| TGGTTCAAGCACCAATCCGT+GGG | - | chr3_2:74530216-74530235 | Msa0424330:CDS | 50.0% | |
| !!! | CGAGCCACTTTTCTGTCAGA+CGG | - | chr3_2:74530757-74530776 | Msa0424330:intron | 50.0% |
| GCTACCGTCTGACAGAAAAG+TGG | + | chr3_2:74530764-74530783 | None:intergenic | 50.0% | |
| AGCATGCTAGCTAAGGAGAG+AGG | - | chr3_2:74530787-74530806 | Msa0424330:CDS | 50.0% | |
| TGGATGTCATCGTCTCAGTG+GGG | + | chr3_2:74530912-74530931 | None:intergenic | 50.0% | |
| CCATCATGCATCAAGTGTCC+GGG | + | chr3_2:74530967-74530986 | None:intergenic | 50.0% | |
| TCTGCAGTGGCACAACGTAT+TGG | - | chr3_2:74531015-74531034 | Msa0424330:CDS | 50.0% | |
| CTTGATTGGACGATGGGGTT+TGG | - | chr3_2:74531077-74531096 | Msa0424330:CDS | 50.0% | |
| TGGGGTTTGGAGAAGCTAGA+AGG | - | chr3_2:74531090-74531109 | Msa0424330:CDS | 50.0% | |
| CGTGCACAGGAGATAGTATG+TGG | - | chr3_2:74531132-74531151 | Msa0424330:CDS | 50.0% | |
| GTGGGATTGCACCCAAGATT+AGG | - | chr3_2:74531151-74531170 | Msa0424330:CDS | 50.0% | |
| GGATTGCACCCAAGATTAGG+AGG | - | chr3_2:74531154-74531173 | Msa0424330:CDS | 50.0% | |
| ! | GCCTTTAGGTGGCATTTTGG+TGG | + | chr3_2:74529869-74529888 | None:intergenic | 50.0% |
| !! | CTTTTTGGGAAGGGGCCTTT+AGG | + | chr3_2:74529883-74529902 | None:intergenic | 50.0% |
| AGTGGGTGACATGATCACTG+AGG | - | chr3_2:74530135-74530154 | Msa0424330:CDS | 50.0% | |
| TGGTTCAAGCACCAATCCGT+GGG | - | chr3_2:74530216-74530235 | Msa0424330:CDS | 50.0% | |
| !!! | CGAGCCACTTTTCTGTCAGA+CGG | - | chr3_2:74530757-74530776 | Msa0424330:intron | 50.0% |
| GCTACCGTCTGACAGAAAAG+TGG | + | chr3_2:74530764-74530783 | None:intergenic | 50.0% | |
| AGCATGCTAGCTAAGGAGAG+AGG | - | chr3_2:74530787-74530806 | Msa0424330:CDS | 50.0% | |
| TGGATGTCATCGTCTCAGTG+GGG | + | chr3_2:74530912-74530931 | None:intergenic | 50.0% | |
| CCATCATGCATCAAGTGTCC+GGG | + | chr3_2:74530967-74530986 | None:intergenic | 50.0% | |
| TCTGCAGTGGCACAACGTAT+TGG | - | chr3_2:74531015-74531034 | Msa0424330:CDS | 50.0% | |
| CTTGATTGGACGATGGGGTT+TGG | - | chr3_2:74531077-74531096 | Msa0424330:CDS | 50.0% | |
| TGGGGTTTGGAGAAGCTAGA+AGG | - | chr3_2:74531090-74531109 | Msa0424330:CDS | 50.0% | |
| CGTGCACAGGAGATAGTATG+TGG | - | chr3_2:74531132-74531151 | Msa0424330:CDS | 50.0% | |
| GTGGGATTGCACCCAAGATT+AGG | - | chr3_2:74531151-74531170 | Msa0424330:CDS | 50.0% | |
| GGATTGCACCCAAGATTAGG+AGG | - | chr3_2:74531154-74531173 | Msa0424330:CDS | 50.0% | |
| ! | GGGGCCTTTAGGTGGCATTT+TGG | + | chr3_2:74529872-74529891 | None:intergenic | 55.0% |
| TTTGGGAAGGGGCCTTTAGG+TGG | + | chr3_2:74529880-74529899 | None:intergenic | 55.0% | |
| TCTTCCACGGGTTTGGCTAG+TGG | + | chr3_2:74529995-74530014 | None:intergenic | 55.0% | |
| CCAGCATTCTTCCACGGGTT+TGG | + | chr3_2:74530002-74530021 | None:intergenic | 55.0% | |
| CCAAACCCGTGGAAGAATGC+TGG | - | chr3_2:74529999-74530018 | Msa0424330:CDS | 55.0% | |
| TGGCTGCCAGCATTCTTCCA+CGG | + | chr3_2:74530008-74530027 | None:intergenic | 55.0% | |
| GATGGGGTTGCAGATGAGAC+TGG | - | chr3_2:74530196-74530215 | Msa0424330:CDS | 55.0% | |
| CTGGTTCAAGCACCAATCCG+TGG | - | chr3_2:74530215-74530234 | Msa0424330:CDS | 55.0% | |
| TGTCCATACAGCCCACGGAT+TGG | + | chr3_2:74530230-74530249 | None:intergenic | 55.0% | |
| CCCGGACACTTGATGCATGA+TGG | - | chr3_2:74530964-74530983 | Msa0424330:CDS | 55.0% | |
| AAGCGAGGGAAAACGTGCAC+AGG | - | chr3_2:74531119-74531138 | Msa0424330:CDS | 55.0% | |
| ! | GGGGCCTTTAGGTGGCATTT+TGG | + | chr3_2:74529872-74529891 | None:intergenic | 55.0% |
| TTTGGGAAGGGGCCTTTAGG+TGG | + | chr3_2:74529880-74529899 | None:intergenic | 55.0% | |
| TCTTCCACGGGTTTGGCTAG+TGG | + | chr3_2:74529995-74530014 | None:intergenic | 55.0% | |
| CCAGCATTCTTCCACGGGTT+TGG | + | chr3_2:74530002-74530021 | None:intergenic | 55.0% | |
| CCAAACCCGTGGAAGAATGC+TGG | - | chr3_2:74529999-74530018 | Msa0424330:CDS | 55.0% | |
| TGGCTGCCAGCATTCTTCCA+CGG | + | chr3_2:74530008-74530027 | None:intergenic | 55.0% | |
| GATGGGGTTGCAGATGAGAC+TGG | - | chr3_2:74530196-74530215 | Msa0424330:CDS | 55.0% | |
| CTGGTTCAAGCACCAATCCG+TGG | - | chr3_2:74530215-74530234 | Msa0424330:CDS | 55.0% | |
| TGTCCATACAGCCCACGGAT+TGG | + | chr3_2:74530230-74530249 | None:intergenic | 55.0% | |
| CCCGGACACTTGATGCATGA+TGG | - | chr3_2:74530964-74530983 | Msa0424330:CDS | 55.0% | |
| AAGCGAGGGAAAACGTGCAC+AGG | - | chr3_2:74531119-74531138 | Msa0424330:CDS | 55.0% | |
| GGCTGCCAGCATTCTTCCAC+GGG | + | chr3_2:74530007-74530026 | None:intergenic | 60.0% | |
| ! | GCACCAATCCGTGGGCTGTA+TGG | - | chr3_2:74530224-74530243 | Msa0424330:CDS | 60.0% |
| GAGCGTGTCCATACAGCCCA+CGG | + | chr3_2:74530235-74530254 | None:intergenic | 60.0% | |
| GGGCTGTATGGACACGCTCT+TGG | - | chr3_2:74530236-74530255 | Msa0424330:CDS | 60.0% | |
| !! | GGGTCGGGTTGACATGCTCA+TGG | - | chr3_2:74530312-74530331 | Msa0424330:CDS | 60.0% |
| CCACATATGCGCGCAAGCAC+GGG | + | chr3_2:74530817-74530836 | None:intergenic | 60.0% | |
| GCCACATATGCGCGCAAGCA+CGG | + | chr3_2:74530818-74530837 | None:intergenic | 60.0% | |
| GGCTGCCAGCATTCTTCCAC+GGG | + | chr3_2:74530007-74530026 | None:intergenic | 60.0% | |
| ! | GCACCAATCCGTGGGCTGTA+TGG | - | chr3_2:74530224-74530243 | Msa0424330:CDS | 60.0% |
| GAGCGTGTCCATACAGCCCA+CGG | + | chr3_2:74530235-74530254 | None:intergenic | 60.0% | |
| GGGCTGTATGGACACGCTCT+TGG | - | chr3_2:74530236-74530255 | Msa0424330:CDS | 60.0% | |
| !! | GGGTCGGGTTGACATGCTCA+TGG | - | chr3_2:74530312-74530331 | Msa0424330:CDS | 60.0% |
| CCACATATGCGCGCAAGCAC+GGG | + | chr3_2:74530817-74530836 | None:intergenic | 60.0% | |
| GCCACATATGCGCGCAAGCA+CGG | + | chr3_2:74530818-74530837 | None:intergenic | 60.0% | |
| GCTGCCACTAGCCAAACCCG+TGG | - | chr3_2:74529988-74530007 | Msa0424330:CDS | 65.0% | |
| CCCGTGCTTGCGCGCATATG+TGG | - | chr3_2:74530814-74530833 | Msa0424330:CDS | 65.0% | |
| GCTGCCACTAGCCAAACCCG+TGG | - | chr3_2:74529988-74530007 | Msa0424330:CDS | 65.0% | |
| CCCGTGCTTGCGCGCATATG+TGG | - | chr3_2:74530814-74530833 | Msa0424330:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 74529808 | 74531337 | 74529808 | ID=Msa0424330;Name=Msa0424330 |
| chr3_2 | mRNA | 74529808 | 74531337 | 74529808 | ID=Msa0424330-mRNA-1;Parent=Msa0424330;Name=Msa0424330-mRNA-1;_AED=0.28;_eAED=0.28;_QI=28|1|1|1|1|1|2|80|364 |
| chr3_2 | exon | 74529808 | 74530445 | 74529808 | ID=Msa0424330-mRNA-1:exon:18828;Parent=Msa0424330-mRNA-1 |
| chr3_2 | exon | 74530773 | 74531337 | 74530773 | ID=Msa0424330-mRNA-1:exon:18827;Parent=Msa0424330-mRNA-1 |
| chr3_2 | five_prime_UTR | 74531310 | 74531337 | 74531310 | ID=Msa0424330-mRNA-1:five_prime_utr;Parent=Msa0424330-mRNA-1 |
| chr3_2 | CDS | 74530773 | 74531309 | 74530773 | ID=Msa0424330-mRNA-1:cds;Parent=Msa0424330-mRNA-1 |
| chr3_2 | CDS | 74529888 | 74530445 | 74529888 | ID=Msa0424330-mRNA-1:cds;Parent=Msa0424330-mRNA-1 |
| chr3_2 | three_prime_UTR | 74529808 | 74529887 | 74529808 | ID=Msa0424330-mRNA-1:three_prime_utr;Parent=Msa0424330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
