Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0409090 | XP_013459897.1 | 96.333 | 300 | 11 | 0 | 1 | 300 | 1 | 300 | 0.0 | 569 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0409090 | sp|Q9FLP3|MGE1_ARATH | 54.045 | 309 | 123 | 6 | 1 | 300 | 1 | 299 | 9.00e-101 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0409090 | A0A072UXX1 | 96.333 | 300 | 11 | 0 | 1 | 300 | 1 | 300 | 0.0 | 569 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0019390 | Msa0409090 | 0.801115 | 1.048263e-48 | -8.615850e-47 |
| Msa0021220 | Msa0409090 | 0.817438 | 3.298086e-52 | -8.615850e-47 |
| Msa0033950 | Msa0409090 | 0.822407 | 2.408637e-53 | -8.615850e-47 |
| Msa0034030 | Msa0409090 | 0.823885 | 1.088381e-53 | -8.615850e-47 |
| Msa0141660 | Msa0409090 | 0.807750 | 4.339113e-50 | -8.615850e-47 |
| Msa0409090 | Msa0482130 | 0.840578 | 7.993317e-58 | -8.615850e-47 |
| Msa0409090 | Msa0489410 | 0.811312 | 7.456267e-51 | -8.615850e-47 |
| Msa0409090 | Msa0502090 | 0.849689 | 2.752357e-60 | -8.615850e-47 |
| Msa0409090 | Msa0542090 | 0.816020 | 6.858328e-52 | -8.615850e-47 |
| Msa0409090 | Msa0542130 | 0.818336 | 2.067326e-52 | -8.615850e-47 |
| Msa0409090 | Msa0580470 | 0.801001 | 1.106501e-48 | -8.615850e-47 |
| Msa0409090 | Msa0605000 | 0.813437 | 2.561331e-51 | -8.615850e-47 |
| Msa0409090 | Msa0685140 | 0.814916 | 1.207283e-51 | -8.615850e-47 |
| Msa0409090 | Msa0719610 | 0.837211 | 5.941869e-57 | -8.615850e-47 |
| Msa0409090 | Msa0763330 | 0.837336 | 5.519032e-57 | -8.615850e-47 |
| Msa0409090 | Msa0772480 | 0.805425 | 1.343055e-49 | -8.615850e-47 |
| Msa0409090 | Msa0795820 | 0.808271 | 3.361737e-50 | -8.615850e-47 |
| Msa0409090 | Msa0796210 | 0.819383 | 1.195628e-52 | -8.615850e-47 |
| Msa0409090 | Msa0945440 | 0.817832 | 2.687325e-52 | -8.615850e-47 |
| Msa0409090 | Msa1082250 | 0.805734 | 1.157106e-49 | -8.615850e-47 |
| Msa0409090 | Msa1153060 | 0.808010 | 3.821000e-50 | -8.615850e-47 |
| Msa0409090 | Msa1209260 | 0.831099 | 2.022366e-55 | -8.615850e-47 |
| Msa0409090 | Msa1359970 | 0.806619 | 7.532662e-50 | -8.615850e-47 |
| Msa0409090 | Msa1400220 | 0.822523 | 2.263003e-53 | -8.615850e-47 |
| Msa0325590 | Msa0409090 | 0.824533 | 7.665943e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0409090 | MtrunA17_Chr3g0100051 | 96.333 | 300 | 11 | 0 | 1 | 300 | 1 | 300 | 0.0 | 569 |
| Msa0409090 | MtrunA17_Chr5g0444801 | 56.358 | 346 | 99 | 9 | 1 | 299 | 1 | 341 | 7.51e-103 | 304 |
| Msa0409090 | MtrunA17_Chr3g0100041 | 75.000 | 52 | 10 | 1 | 1 | 49 | 1 | 52 | 1.52e-13 | 70.5 |
| Msa0409090 | MtrunA17_Chr7g0254481 | 25.890 | 309 | 164 | 10 | 8 | 289 | 27 | 297 | 3.91e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0409090 | AT5G55200.1 | 54.045 | 309 | 123 | 6 | 1 | 300 | 1 | 299 | 9.15e-102 | 300 |
| Msa0409090 | AT4G26780.1 | 52.960 | 321 | 113 | 5 | 1 | 290 | 1 | 314 | 2.31e-98 | 292 |
Find 105 sgRNAs with CRISPR-Local
Find 319 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAATTGGAAGGAAAATT+AGG | 0.127195 | 3_2:+49427631 | None:intergenic |
| GATGTCTTCTCTTATATTTC+AGG | 0.138831 | 3_2:-49423487 | Msa0409090:three_prime_UTR |
| ACTAGATGTTGCTGACAATT+TGG | 0.201252 | 3_2:-49426088 | Msa0409090:CDS |
| TGAAGAAATTCTTGAGTAAT+TGG | 0.221015 | 3_2:-49423591 | Msa0409090:three_prime_UTR |
| GCTTGGAAGCATCGGGTATT+TGG | 0.222694 | 3_2:+49424159 | None:intergenic |
| GATTTGATTCCATGAGATTT+TGG | 0.243685 | 3_2:-49423433 | Msa0409090:three_prime_UTR |
| TCCTCATCAATTACCCAATA+AGG | 0.247948 | 3_2:-49427481 | Msa0409090:intron |
| GAAGAAGAATAAGAAGAAAT+TGG | 0.256272 | 3_2:+49427618 | None:intergenic |
| CTTCAGCCATGTCCGTTTAT+AGG | 0.263445 | 3_2:-49427599 | Msa0409090:exon |
| TTAATAATAACAAGAGTATA+TGG | 0.282805 | 3_2:-49423455 | Msa0409090:three_prime_UTR |
| AGAGAGAAGCGTGAAGGTTC+TGG | 0.294360 | 3_2:+49427560 | None:intergenic |
| TAAAGCAAATTGGCTTGAAT+TGG | 0.300336 | 3_2:+49426671 | None:intergenic |
| TCATCCTTGACTCCAAGATT+TGG | 0.307717 | 3_2:-49426635 | Msa0409090:CDS |
| TATTGGAGAATAAAGCAAAT+TGG | 0.319679 | 3_2:+49426661 | None:intergenic |
| GGATCAAATGGTTCATTTGT+AGG | 0.319847 | 3_2:+49424203 | None:intergenic |
| ACAAAGCAGATGAATGATTA+TGG | 0.320630 | 3_2:-49423616 | Msa0409090:exon |
| GGAGTCAAGGATGAACTTAT+TGG | 0.324056 | 3_2:+49426644 | None:intergenic |
| AGGAAAATTAGGGTTGGAAT+TGG | 0.324677 | 3_2:+49427642 | None:intergenic |
| TACTTCGTCCAGCAGAAGTT+GGG | 0.331630 | 3_2:-49423664 | Msa0409090:CDS |
| GCGGCTTGATCAGATTCTTT+AGG | 0.338808 | 3_2:+49426018 | None:intergenic |
| TTCAGCCATGTCCGTTTATA+GGG | 0.341805 | 3_2:-49427598 | Msa0409090:exon |
| TTACGAGGGAGATACCTTAT+TGG | 0.352778 | 3_2:+49427467 | None:intergenic |
| CTAGATGTTGCTGACAATTT+GGG | 0.355715 | 3_2:-49426087 | Msa0409090:CDS |
| AGAAATTGGAAGGAAAATTA+GGG | 0.361321 | 3_2:+49427632 | None:intergenic |
| GGGTCATCACTTGAAGATTC+AGG | 0.372737 | 3_2:+49426593 | None:intergenic |
| TCCAACAGTGCCTGGAGGCT+TGG | 0.389340 | 3_2:+49424142 | None:intergenic |
| AAGCTTTATTAATTCATCTC+TGG | 0.396766 | 3_2:+49426368 | None:intergenic |
| GGAAAATTAGGGTTGGAATT+GGG | 0.405724 | 3_2:+49427643 | None:intergenic |
| TCCAAGCCTCCAGGCACTGT+TGG | 0.408980 | 3_2:-49424143 | Msa0409090:CDS |
| ATTGGGATTGGAGAGGGAAA+GGG | 0.413334 | 3_2:+49427660 | None:intergenic |
| TACGAGGGAGATACCTTATT+GGG | 0.413867 | 3_2:+49427468 | None:intergenic |
| ATTAGGGTTGGAATTGGGAT+TGG | 0.414038 | 3_2:+49427648 | None:intergenic |
| TTCATTCTGATCAACTGCCT+TGG | 0.415646 | 3_2:+49426550 | None:intergenic |
| TTATTTGTTAAAATCATTGC+GGG | 0.416002 | 3_2:-49423187 | Msa0409090:three_prime_UTR |
| TTATGCCTGTTTGGATCAAA+TGG | 0.423526 | 3_2:+49424191 | None:intergenic |
| AAGATGGCATTATGCCTGTT+TGG | 0.429437 | 3_2:+49424182 | None:intergenic |
| GAGGAAGAAAATCCAAATCT+TGG | 0.432992 | 3_2:+49426623 | None:intergenic |
| GAGGAAAGGTACTGAATTGA+TGG | 0.433690 | 3_2:+49427499 | None:intergenic |
| GAAGATCAAACCAGTGGATC+AGG | 0.435406 | 3_2:-49426515 | Msa0409090:intron |
| AGAACAACTCCAACAGTGCC+TGG | 0.449363 | 3_2:+49424134 | None:intergenic |
| TGTGTAACCCCAACTTCTGC+TGG | 0.449996 | 3_2:+49423656 | None:intergenic |
| ACCACTCCTGAAAACACTTC+TGG | 0.450423 | 3_2:-49425995 | Msa0409090:CDS |
| GCCTGGAGGCTTGGAAGCAT+CGG | 0.451549 | 3_2:+49424151 | None:intergenic |
| ATGAACCATTTGATCCAAAC+AGG | 0.454025 | 3_2:-49424196 | Msa0409090:CDS |
| AATTGGGATTGGAGAGGGAA+AGG | 0.461831 | 3_2:+49427659 | None:intergenic |
| TAAATGATGGAAAATTTGCT+TGG | 0.463124 | 3_2:+49427739 | None:intergenic |
| GTTGGAATTGGGATTGGAGA+GGG | 0.476327 | 3_2:+49427654 | None:intergenic |
| TCGAGAAAGTACCCTATAAA+CGG | 0.476409 | 3_2:+49427587 | None:intergenic |
| ACATACCCCACATTAAGTTC+AGG | 0.494563 | 3_2:-49423353 | Msa0409090:three_prime_UTR |
| CCCGATGCTTCCAAGCCTCC+AGG | 0.496526 | 3_2:-49424152 | Msa0409090:CDS |
| AAGAGCTTCTTCAGTTGTAA+AGG | 0.501918 | 3_2:-49426064 | Msa0409090:CDS |
| TAATTTGTCAAATGCGGAAA+GGG | 0.503232 | 3_2:-49423512 | Msa0409090:three_prime_UTR |
| CCTGGAGGCTTGGAAGCATC+GGG | 0.503855 | 3_2:+49424152 | None:intergenic |
| AGCAACATCTAGTAAACTCT+TGG | 0.505918 | 3_2:+49426098 | None:intergenic |
| GATCAGAATGAAGAAGGTAA+AGG | 0.506235 | 3_2:-49426539 | Msa0409090:CDS |
| AATAAAGCTTGTTACTGAGA+AGG | 0.506809 | 3_2:-49426355 | Msa0409090:CDS |
| AAGAATAAGAAGAAATTGGA+AGG | 0.519677 | 3_2:+49427622 | None:intergenic |
| GAGAGCTCCTGAACTTAATG+TGG | 0.526562 | 3_2:+49423346 | None:intergenic |
| GTACTTCGTCCAGCAGAAGT+TGG | 0.529390 | 3_2:-49423665 | Msa0409090:CDS |
| ATTGGAAGGAAAATTAGGGT+TGG | 0.535469 | 3_2:+49427636 | None:intergenic |
| AGATGGAGAATGTCATGGAC+AGG | 0.536791 | 3_2:-49426263 | Msa0409090:CDS |
| TATAGTTGACTCTATTGTAG+TGG | 0.537329 | 3_2:-49423383 | Msa0409090:three_prime_UTR |
| TGAAGACAACCAAAATCTCA+TGG | 0.537916 | 3_2:+49423424 | None:intergenic |
| AAATCCAAATCTTGGAGTCA+AGG | 0.539566 | 3_2:+49426631 | None:intergenic |
| TGAAGATTCAGGTGAGGCCG+AGG | 0.545572 | 3_2:+49426604 | None:intergenic |
| TCTGCGTACTTATGCGGAGA+TGG | 0.546823 | 3_2:-49426280 | Msa0409090:CDS |
| GCAGTTGATCAGAATGAAGA+AGG | 0.554262 | 3_2:-49426545 | Msa0409090:CDS |
| ATTGGGTAATTGATGAGGAA+AGG | 0.561572 | 3_2:+49427485 | None:intergenic |
| TTATTCAGATTCAGATGTAG+AGG | 0.563147 | 3_2:-49426406 | Msa0409090:intron |
| AAAGTGGTGGAAAGAGGTTG+TGG | 0.570044 | 3_2:+49427525 | None:intergenic |
| AGCATCGGGTATTTGGAAGA+TGG | 0.570393 | 3_2:+49424166 | None:intergenic |
| AGTTGGGGTTACACATGAAG+TGG | 0.570863 | 3_2:-49423648 | Msa0409090:CDS |
| ACCTTATTGGGTAATTGATG+AGG | 0.571309 | 3_2:+49427480 | None:intergenic |
| GTAATTTGTCAAATGCGGAA+AGG | 0.571574 | 3_2:-49423513 | Msa0409090:three_prime_UTR |
| TAGACCCTAACCTGATCCAC+TGG | 0.577941 | 3_2:+49426505 | None:intergenic |
| GAAGTTGAAGCACAAAGAGA+TGG | 0.578238 | 3_2:-49426322 | Msa0409090:CDS |
| CACTGTTGGAGTTGTTCTCA+AGG | 0.578915 | 3_2:-49424129 | Msa0409090:intron |
| CTTATTTGTTAAAATCATTG+CGG | 0.579520 | 3_2:-49423188 | Msa0409090:three_prime_UTR |
| TGCGGAGATGGAGAATGTCA+TGG | 0.579947 | 3_2:-49426268 | Msa0409090:CDS |
| AGAGCTCCTGAACTTAATGT+GGG | 0.580871 | 3_2:+49423347 | None:intergenic |
| GGAAAGGGTTTATGAAACAG+AGG | 0.591426 | 3_2:+49427675 | None:intergenic |
| TGAACTACATTAAAAGCCAT+CGG | 0.599067 | 3_2:+49423561 | None:intergenic |
| ATGAACGGAGAGAATGTGAA+GGG | 0.602628 | 3_2:+49427706 | None:intergenic |
| ACAGAGGAAAATGTTATGAA+CGG | 0.604074 | 3_2:+49427691 | None:intergenic |
| CGAAGAAGAGAGAAGCGTGA+AGG | 0.604136 | 3_2:+49427554 | None:intergenic |
| GACTGAGAAACAACTTGCAG+AGG | 0.606225 | 3_2:-49425959 | Msa0409090:intron |
| GGTTGGAATTGGGATTGGAG+AGG | 0.608036 | 3_2:+49427653 | None:intergenic |
| AATAACATTTATAAAGTACA+AGG | 0.611757 | 3_2:+49423264 | None:intergenic |
| TGGAAGAAAGTGGTGGAAAG+AGG | 0.615451 | 3_2:+49427519 | None:intergenic |
| TAAAGTTCTGCGTACTTATG+CGG | 0.617863 | 3_2:-49426286 | Msa0409090:CDS |
| GCGAGTGGTAGCGAGAGTGT+TGG | 0.618119 | 3_2:+49423210 | None:intergenic |
| ACTTCGTCCAGCAGAAGTTG+GGG | 0.622891 | 3_2:-49423663 | Msa0409090:CDS |
| GAGCTGTAATTTGTCAAATG+CGG | 0.622927 | 3_2:-49423518 | Msa0409090:three_prime_UTR |
| CTCCTGAAAACACTTCTGGA+AGG | 0.623007 | 3_2:-49425991 | Msa0409090:CDS |
| TATGAACGGAGAGAATGTGA+AGG | 0.634810 | 3_2:+49427705 | None:intergenic |
| AAAGGTGAAGATCAAACCAG+TGG | 0.650547 | 3_2:-49426521 | Msa0409090:CDS |
| TGGGGTTACACATGAAGTGG+AGG | 0.652811 | 3_2:-49423645 | Msa0409090:CDS |
| ATCACTTGAAGATTCAGGTG+AGG | 0.657168 | 3_2:+49426598 | None:intergenic |
| ACTGAATTGATGGAAGAAAG+TGG | 0.659685 | 3_2:+49427509 | None:intergenic |
| AAGTACCCTATAAACGGACA+TGG | 0.685135 | 3_2:+49427593 | None:intergenic |
| TATTTGTTAAAATCATTGCG+GGG | 0.697076 | 3_2:-49423186 | Msa0409090:three_prime_UTR |
| GAGCTCCTGAACTTAATGTG+GGG | 0.705627 | 3_2:+49423348 | None:intergenic |
| ACAACTCCAACAGTGCCTGG+AGG | 0.719903 | 3_2:+49424137 | None:intergenic |
| GAATTGATGGAAGAAAGTGG+TGG | 0.749721 | 3_2:+49427512 | None:intergenic |
| GGACAGGACTAATCGCAATG+CGG | 0.753480 | 3_2:-49426247 | Msa0409090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTATTTTTTGATGTTT+TGG | - | chr3_2:49423652-49423671 | Msa0409090:CDS | 10.0% |
| !! | AAATAGAAAAGGAAAATTTA+GGG | + | chr3_2:49423571-49423590 | None:intergenic | 15.0% |
| !! | AAAATAGAAAAGGAAAATTT+AGG | + | chr3_2:49423572-49423591 | None:intergenic | 15.0% |
| !! | AACATCAAAAAATAGAAAAA+GGG | + | chr3_2:49423723-49423742 | None:intergenic | 15.0% |
| !! | AAACATCAAAAAATAGAAAA+AGG | + | chr3_2:49423724-49423743 | None:intergenic | 15.0% |
| !!! | TTTTCTATTTTTTGATGTTT+TGG | - | chr3_2:49423724-49423743 | Msa0409090:intron | 15.0% |
| !! | TAGAATAATGATAGAAAAAT+AGG | - | chr3_2:49425139-49425158 | Msa0409090:intron | 15.0% |
| !!! | TTGTTATTTACGATTTTTTT+TGG | + | chr3_2:49426535-49426554 | None:intergenic | 15.0% |
| !!! | TTTTGTAATTTGTATTGAAA+GGG | + | chr3_2:49426923-49426942 | None:intergenic | 15.0% |
| !!! | TTAATAATAACAAGAGTATA+TGG | - | chr3_2:49427472-49427491 | Msa0409090:intron | 15.0% |
| !! | AATAACATTTATAAAGTACA+AGG | + | chr3_2:49427666-49427685 | None:intergenic | 15.0% |
| !! | GGGAAAATAAAAATAAATGA+TGG | + | chr3_2:49423204-49423223 | None:intergenic | 20.0% |
| !!! | TTTTTTATTCAGAATTACGA+GGG | + | chr3_2:49423477-49423496 | None:intergenic | 20.0% |
| !!! | TTTTTTTATTCAGAATTACG+AGG | + | chr3_2:49423478-49423497 | None:intergenic | 20.0% |
| !! | AAAATAGAAAAAGGGAATTA+AGG | + | chr3_2:49423715-49423734 | None:intergenic | 20.0% |
| !! | GTTTAAATTTATTGTTGATG+TGG | - | chr3_2:49423766-49423785 | Msa0409090:intron | 20.0% |
| !! | ATTAGGTTTACTTAACTATT+TGG | - | chr3_2:49423803-49423822 | Msa0409090:intron | 20.0% |
| !!! | TTCAAAAAAATTTGCTATAC+AGG | - | chr3_2:49424707-49424726 | Msa0409090:intron | 20.0% |
| !!! | TTTCTTTTTGTTTTATACTG+TGG | - | chr3_2:49424743-49424762 | Msa0409090:intron | 20.0% |
| !!! | TTCTTTTTGTTTTATACTGT+GGG | - | chr3_2:49424744-49424763 | Msa0409090:intron | 20.0% |
| !! | ATAAATGTGGAAAATTGTAA+TGG | + | chr3_2:49425110-49425129 | None:intergenic | 20.0% |
| !! | TCTAGAAAATCATATAAATG+TGG | + | chr3_2:49425123-49425142 | None:intergenic | 20.0% |
| !! | AATAATGATAGAAAAATAGG+TGG | - | chr3_2:49425142-49425161 | Msa0409090:intron | 20.0% |
| !!! | TTTAATTTTTTAGGCAACTA+CGG | + | chr3_2:49425216-49425235 | None:intergenic | 20.0% |
| !! | TTCTCTTACTATCAATATAT+TGG | - | chr3_2:49425511-49425530 | Msa0409090:intron | 20.0% |
| !! | TCTCTTACTATCAATATATT+GGG | - | chr3_2:49425512-49425531 | Msa0409090:intron | 20.0% |
| !!! | GTTGAAAAGAATTGTTATTT+TGG | + | chr3_2:49425666-49425685 | None:intergenic | 20.0% |
| !! | ATGTTAGGATTAAGAATAAA+GGG | + | chr3_2:49425729-49425748 | None:intergenic | 20.0% |
| !! | AATGTTAGGATTAAGAATAA+AGG | + | chr3_2:49425730-49425749 | None:intergenic | 20.0% |
| !! | AGTTATGTTTCAATAAATCT+AGG | - | chr3_2:49425871-49425890 | Msa0409090:intron | 20.0% |
| !! | GTTATGTTTCAATAAATCTA+GGG | - | chr3_2:49425872-49425891 | Msa0409090:intron | 20.0% |
| !! | TTATGTTTCAATAAATCTAG+GGG | - | chr3_2:49425873-49425892 | Msa0409090:intron | 20.0% |
| !! | AAGTTTATTGTTTAATGCAA+GGG | + | chr3_2:49426070-49426089 | None:intergenic | 20.0% |
| !!! | ATATTGGGATTTTAGTATAT+TGG | + | chr3_2:49426355-49426374 | None:intergenic | 20.0% |
| !!! | TTTAATAACTTGCATATTTG+TGG | + | chr3_2:49426451-49426470 | None:intergenic | 20.0% |
| !! | AAGTTATTAAAATTACCTGT+AGG | - | chr3_2:49426460-49426479 | Msa0409090:intron | 20.0% |
| !! | TAAATAATAAGATTGAACAC+TGG | + | chr3_2:49426648-49426667 | None:intergenic | 20.0% |
| !!! | ATATAGAAACATAGTTTTGA+AGG | + | chr3_2:49426893-49426912 | None:intergenic | 20.0% |
| !!! | TTCAAAACTATGTTTCTATA+TGG | - | chr3_2:49426892-49426911 | Msa0409090:intron | 20.0% |
| !!! | GTTTTGTAATTTGTATTGAA+AGG | + | chr3_2:49426924-49426943 | None:intergenic | 20.0% |
| !! | GTAAATAAAAAGGAATACTT+TGG | - | chr3_2:49427203-49427222 | Msa0409090:intron | 20.0% |
| !! | TATGATTTCCTAAAAAGAAA+GGG | + | chr3_2:49427621-49427640 | None:intergenic | 20.0% |
| !! | TTATGATTTCCTAAAAAGAA+AGG | + | chr3_2:49427622-49427641 | None:intergenic | 20.0% |
| !!! | TTTTTTATTTGATAAGTGCT+AGG | - | chr3_2:49427684-49427703 | Msa0409090:five_prime_UTR | 20.0% |
| !!! | CTTATTTGTTAAAATCATTG+CGG | - | chr3_2:49427739-49427758 | Msa0409090:five_prime_UTR | 20.0% |
| !!! | TTATTTGTTAAAATCATTGC+GGG | - | chr3_2:49427740-49427759 | Msa0409090:five_prime_UTR | 20.0% |
| !! | TAAATGATGGAAAATTTGCT+TGG | + | chr3_2:49423191-49423210 | None:intergenic | 25.0% |
| ! | AGAAATTGGAAGGAAAATTA+GGG | + | chr3_2:49423298-49423317 | None:intergenic | 25.0% |
| ! | AAGAAATTGGAAGGAAAATT+AGG | + | chr3_2:49423299-49423318 | None:intergenic | 25.0% |
| ! | AAGAATAAGAAGAAATTGGA+AGG | + | chr3_2:49423308-49423327 | None:intergenic | 25.0% |
| ! | GAAGAAGAATAAGAAGAAAT+TGG | + | chr3_2:49423312-49423331 | None:intergenic | 25.0% |
| !!! | AAAGGAAAATTTAGGGTTTT+AGG | + | chr3_2:49423564-49423583 | None:intergenic | 25.0% |
| ! | AGAACATCACAAAATAGAAA+AGG | + | chr3_2:49423582-49423601 | None:intergenic | 25.0% |
| !! | TTTTCTATTTTGTGATGTTC+TGG | - | chr3_2:49423581-49423600 | Msa0409090:three_prime_UTR | 25.0% |
| ! | TATTGGAGAATAAAGCAAAT+TGG | + | chr3_2:49424269-49424288 | None:intergenic | 25.0% |
| !!! | AAGCTTTATTAATTCATCTC+TGG | + | chr3_2:49424562-49424581 | None:intergenic | 25.0% |
| !!! | TCTTTTTGTTTTATACTGTG+GGG | - | chr3_2:49424745-49424764 | Msa0409090:intron | 25.0% |
| !!! | GCTGCTTTCTTTAATTTTTT+AGG | + | chr3_2:49425225-49425244 | None:intergenic | 25.0% |
| ! | GAAGAGAATAAAAGAAAACT+AGG | - | chr3_2:49425256-49425275 | Msa0409090:intron | 25.0% |
| !!! | TTAAGAGAAAGTGTTTTGTT+AGG | - | chr3_2:49425362-49425381 | Msa0409090:intron | 25.0% |
| ! | TATCAATATATTGGGATGAT+AGG | - | chr3_2:49425520-49425539 | Msa0409090:intron | 25.0% |
| ! | AGAATAAAGGGTTGTTTATT+AGG | + | chr3_2:49425717-49425736 | None:intergenic | 25.0% |
| ! | AGTTTATTGTTTAATGCAAG+GGG | + | chr3_2:49426069-49426088 | None:intergenic | 25.0% |
| ! | CAAGTTTATTGTTTAATGCA+AGG | + | chr3_2:49426071-49426090 | None:intergenic | 25.0% |
| ! | TGATTAATAGGAAACATGAT+GGG | + | chr3_2:49426279-49426298 | None:intergenic | 25.0% |
| ! | ATGATTAATAGGAAACATGA+TGG | + | chr3_2:49426280-49426299 | None:intergenic | 25.0% |
| ! | TATGTGTCGAAAGATATATT+GGG | + | chr3_2:49426370-49426389 | None:intergenic | 25.0% |
| ! | GTAAATTGATATCCATGTTT+AGG | - | chr3_2:49426562-49426581 | Msa0409090:CDS | 25.0% |
| ! | TATTAAGTAATGTGCTTCAA+TGG | - | chr3_2:49426616-49426635 | Msa0409090:CDS | 25.0% |
| ! | AATACTTTGGTTATATTTGC+AGG | - | chr3_2:49427216-49427235 | Msa0409090:intron | 25.0% |
| ! | TGAAGAAATTCTTGAGTAAT+TGG | - | chr3_2:49427336-49427355 | Msa0409090:intron | 25.0% |
| !! | TATTTGTTAAAATCATTGCG+GGG | - | chr3_2:49427741-49427760 | Msa0409090:five_prime_UTR | 25.0% |
| ACAGAGGAAAATGTTATGAA+CGG | + | chr3_2:49423239-49423258 | None:intergenic | 30.0% | |
| !!! | TAGGGTTTTATTAGGGTTTT+AGG | - | chr3_2:49423524-49423543 | Msa0409090:three_prime_UTR | 30.0% |
| !!! | AGGGTTTTATTAGGGTTTTA+GGG | - | chr3_2:49423525-49423544 | Msa0409090:three_prime_UTR | 30.0% |
| !!! | TTTTTGATGTTTTGGCTATG+TGG | - | chr3_2:49423660-49423679 | Msa0409090:CDS | 30.0% |
| GGTTTACTTAACTATTTGGT+TGG | - | chr3_2:49423807-49423826 | Msa0409090:intron | 30.0% | |
| CGTCTATCTACTAAAAAACA+AGG | + | chr3_2:49423885-49423904 | None:intergenic | 30.0% | |
| GTTATTGGGATTCATTTAAG+AGG | + | chr3_2:49424039-49424058 | None:intergenic | 30.0% | |
| AAATGAATCCCAATAACATG+AGG | - | chr3_2:49424042-49424061 | Msa0409090:intron | 30.0% | |
| AATGAATCCCAATAACATGA+GGG | - | chr3_2:49424043-49424062 | Msa0409090:intron | 30.0% | |
| !! | TAAAGCAAATTGGCTTGAAT+TGG | + | chr3_2:49424259-49424278 | None:intergenic | 30.0% |
| ! | AAGATTTGGATTTTCTTCCT+CGG | - | chr3_2:49424306-49424325 | Msa0409090:intron | 30.0% |
| !!! | CTTTTTCACTTGTTTTTGCA+GGG | + | chr3_2:49424357-49424376 | None:intergenic | 30.0% |
| AAAAACAAGTGAAAAAGCCA+AGG | - | chr3_2:49424360-49424379 | Msa0409090:intron | 30.0% | |
| TTATTCAGATTCAGATGTAG+AGG | - | chr3_2:49424521-49424540 | Msa0409090:intron | 30.0% | |
| !! | AATAAAGCTTGTTACTGAGA+AGG | - | chr3_2:49424572-49424591 | Msa0409090:intron | 30.0% |
| GCTATATCTCTTTAGTTGTT+AGG | - | chr3_2:49425009-49425028 | Msa0409090:intron | 30.0% | |
| ! | ATGTGGAAAATTGTAATGGA+AGG | + | chr3_2:49425106-49425125 | None:intergenic | 30.0% |
| AAAGCATATTGCTAAGTTCA+TGG | + | chr3_2:49425315-49425334 | None:intergenic | 30.0% | |
| ! | TTTGTTAGGAACCTTTCTTT+TGG | - | chr3_2:49425376-49425395 | Msa0409090:intron | 30.0% |
| CTTTCCATATACCAAAAGAA+AGG | + | chr3_2:49425390-49425409 | None:intergenic | 30.0% | |
| AAAGGGTTGTTTATTAGGAT+TGG | + | chr3_2:49425712-49425731 | None:intergenic | 30.0% | |
| CTTTCTTTATTACAACCATG+AGG | + | chr3_2:49425778-49425797 | None:intergenic | 30.0% | |
| GTAATAAAGAAAGACTGATC+AGG | - | chr3_2:49425785-49425804 | Msa0409090:intron | 30.0% | |
| !! | ATACAGTTGTTGATTTACTG+TGG | - | chr3_2:49426021-49426040 | Msa0409090:CDS | 30.0% |
| GTTTATTGTTTAATGCAAGG+GGG | + | chr3_2:49426068-49426087 | None:intergenic | 30.0% | |
| ACATCTGTAGGATGATTAAT+AGG | + | chr3_2:49426291-49426310 | None:intergenic | 30.0% | |
| TTAATCATCCTACAGATGTT+AGG | - | chr3_2:49426292-49426311 | Msa0409090:CDS | 30.0% | |
| ATTCTATTCCTAACATCTGT+AGG | + | chr3_2:49426303-49426322 | None:intergenic | 30.0% | |
| GTATGTGTCGAAAGATATAT+TGG | + | chr3_2:49426371-49426390 | None:intergenic | 30.0% | |
| TATTTGTGGTCTACTCATAA+TGG | + | chr3_2:49426437-49426456 | None:intergenic | 30.0% | |
| ! | TTTTCAATCTACATTCCTAC+AGG | + | chr3_2:49426478-49426497 | None:intergenic | 30.0% |
| TTACAGGTACTTAAAAAGCA+CGG | - | chr3_2:49426685-49426704 | Msa0409090:intron | 30.0% | |
| !!! | AGCATGTAGTTTTGTACTTT+AGG | + | chr3_2:49426962-49426981 | None:intergenic | 30.0% |
| AAGTGTGATTGATCACATTT+AGG | + | chr3_2:49427073-49427092 | None:intergenic | 30.0% | |
| ! | AATGTGATCAATCACACTTT+TGG | - | chr3_2:49427074-49427093 | Msa0409090:intron | 30.0% |
| !!! | ACACTTTTGGTCTTGTTTTA+TGG | - | chr3_2:49427087-49427106 | Msa0409090:intron | 30.0% |
| CACGATGTGTGTAAATAAAA+AGG | - | chr3_2:49427193-49427212 | Msa0409090:intron | 30.0% | |
| ACAAAGCAGATGAATGATTA+TGG | - | chr3_2:49427311-49427330 | Msa0409090:intron | 30.0% | |
| ! | AGTAATTGGATATTTTCCGA+TGG | - | chr3_2:49427350-49427369 | Msa0409090:intron | 30.0% |
| TGAACTACATTAAAAGCCAT+CGG | + | chr3_2:49427369-49427388 | None:intergenic | 30.0% | |
| ! | TAATTTGTCAAATGCGGAAA+GGG | - | chr3_2:49427415-49427434 | Msa0409090:intron | 30.0% |
| GATGTCTTCTCTTATATTTC+AGG | - | chr3_2:49427440-49427459 | Msa0409090:intron | 30.0% | |
| ! | GATTTGATTCCATGAGATTT+TGG | - | chr3_2:49427494-49427513 | Msa0409090:CDS | 30.0% |
| ! | TATAGTTGACTCTATTGTAG+TGG | - | chr3_2:49427544-49427563 | Msa0409090:CDS | 30.0% |
| !! | AGTTTTGTCCCTTTCTTTTT+AGG | - | chr3_2:49427610-49427629 | Msa0409090:exon | 30.0% |
| !! | GATTTTAACAAATAAGCGAG+TGG | + | chr3_2:49427735-49427754 | None:intergenic | 30.0% |
| !!! | GGGGCAAACATTTTTAAAAT+GGG | - | chr3_2:49427760-49427779 | Msa0409090:five_prime_UTR | 30.0% |
| GGAAAATTAGGGTTGGAATT+GGG | + | chr3_2:49423287-49423306 | None:intergenic | 35.0% | |
| AGGAAAATTAGGGTTGGAAT+TGG | + | chr3_2:49423288-49423307 | None:intergenic | 35.0% | |
| ATTGGAAGGAAAATTAGGGT+TGG | + | chr3_2:49423294-49423313 | None:intergenic | 35.0% | |
| !! | TCGAGAAAGTACCCTATAAA+CGG | + | chr3_2:49423343-49423362 | None:intergenic | 35.0% |
| ACTGAATTGATGGAAGAAAG+TGG | + | chr3_2:49423421-49423440 | None:intergenic | 35.0% | |
| ATTGGGTAATTGATGAGGAA+AGG | + | chr3_2:49423445-49423464 | None:intergenic | 35.0% | |
| TCCTCATCAATTACCCAATA+AGG | - | chr3_2:49423446-49423465 | Msa0409090:three_prime_UTR | 35.0% | |
| ACCTTATTGGGTAATTGATG+AGG | + | chr3_2:49423450-49423469 | None:intergenic | 35.0% | |
| !!! | TTGTGCTGTAGGGTTTTATT+AGG | - | chr3_2:49423516-49423535 | Msa0409090:three_prime_UTR | 35.0% |
| !!! | TGTGCTGTAGGGTTTTATTA+GGG | - | chr3_2:49423517-49423536 | Msa0409090:three_prime_UTR | 35.0% |
| TGGCACAAGTAGTAGATATT+AGG | - | chr3_2:49423786-49423805 | Msa0409090:intron | 35.0% | |
| TTACCCAGACAAATAATCGA+GGG | + | chr3_2:49424163-49424182 | None:intergenic | 35.0% | |
| ATTACCCAGACAAATAATCG+AGG | + | chr3_2:49424164-49424183 | None:intergenic | 35.0% | |
| AAATCCAAATCTTGGAGTCA+AGG | + | chr3_2:49424299-49424318 | None:intergenic | 35.0% | |
| GAGGAAGAAAATCCAAATCT+TGG | + | chr3_2:49424307-49424326 | None:intergenic | 35.0% | |
| !!! | GCTTTTTCACTTGTTTTTGC+AGG | + | chr3_2:49424358-49424377 | None:intergenic | 35.0% |
| GATCAGAATGAAGAAGGTAA+AGG | - | chr3_2:49424388-49424407 | Msa0409090:intron | 35.0% | |
| TAAAGTTCTGCGTACTTATG+CGG | - | chr3_2:49424641-49424660 | Msa0409090:intron | 35.0% | |
| AGCAACATCTAGTAAACTCT+TGG | + | chr3_2:49424832-49424851 | None:intergenic | 35.0% | |
| ACTAGATGTTGCTGACAATT+TGG | - | chr3_2:49424839-49424858 | Msa0409090:intron | 35.0% | |
| CTAGATGTTGCTGACAATTT+GGG | - | chr3_2:49424840-49424859 | Msa0409090:intron | 35.0% | |
| AAGAGCTTCTTCAGTTGTAA+AGG | - | chr3_2:49424863-49424882 | Msa0409090:intron | 35.0% | |
| ! | ACAACTGACTCTGAAAAGAA+TGG | + | chr3_2:49425053-49425072 | None:intergenic | 35.0% |
| ! | GAAAAATAGGTGGATTCTGA+AGG | - | chr3_2:49425152-49425171 | Msa0409090:intron | 35.0% |
| ! | GGAACCTTTCTTTTGGTATA+TGG | - | chr3_2:49425383-49425402 | Msa0409090:intron | 35.0% |
| ATGGAAAGAATTCCCAAAAC+TGG | - | chr3_2:49425402-49425421 | Msa0409090:intron | 35.0% | |
| TGGAAAGAATTCCCAAAACT+GGG | - | chr3_2:49425403-49425422 | Msa0409090:intron | 35.0% | |
| ! | ATTCATTTCTGCCCAGTTTT+GGG | + | chr3_2:49425417-49425436 | None:intergenic | 35.0% |
| ! | TATTCATTTCTGCCCAGTTT+TGG | + | chr3_2:49425418-49425437 | None:intergenic | 35.0% |
| ATTGCAAGAGAAGATACGAA+AGG | - | chr3_2:49425543-49425562 | Msa0409090:intron | 35.0% | |
| AGATGATAAACTTGCACTCA+AGG | - | chr3_2:49425576-49425595 | Msa0409090:intron | 35.0% | |
| TTATTACAACCATGAGGACA+AGG | + | chr3_2:49425772-49425791 | None:intergenic | 35.0% | |
| AGATAGAATCCGATGGAAAA+AGG | - | chr3_2:49425808-49425827 | Msa0409090:intron | 35.0% | |
| AAAAAACCTATCGGGAGATA+CGG | + | chr3_2:49425842-49425861 | None:intergenic | 35.0% | |
| ! | GGGCTTTTAAGCAAAACTTA+GGG | - | chr3_2:49425893-49425912 | Msa0409090:intron | 35.0% |
| ! | GGCTTTTAAGCAAAACTTAG+GGG | - | chr3_2:49425894-49425913 | Msa0409090:intron | 35.0% |
| ! | GCTTTTAAGCAAAACTTAGG+GGG | - | chr3_2:49425895-49425914 | Msa0409090:intron | 35.0% |
| CAGGAAAAGAAATTGCTCTA+CGG | + | chr3_2:49425921-49425940 | None:intergenic | 35.0% | |
| CAACTGTATCTGTAACAACT+AGG | + | chr3_2:49426010-49426029 | None:intergenic | 35.0% | |
| ACTTGTATCTTTCACTGTTC+CGG | - | chr3_2:49426086-49426105 | Msa0409090:CDS | 35.0% | |
| ACAGACACTTATGAAGAAAC+CGG | + | chr3_2:49426108-49426127 | None:intergenic | 35.0% | |
| AAGAACCAGAAAGTAATCCA+AGG | + | chr3_2:49426133-49426152 | None:intergenic | 35.0% | |
| ! | TTAATAGGAAACATGATGGG+TGG | + | chr3_2:49426276-49426295 | None:intergenic | 35.0% |
| TAGATAGACGAGCTTATCTT+AGG | + | chr3_2:49426406-49426425 | None:intergenic | 35.0% | |
| GGATCAAATGGTTCATTTGT+AGG | + | chr3_2:49426727-49426746 | None:intergenic | 35.0% | |
| ATGAACCATTTGATCCAAAC+AGG | - | chr3_2:49426731-49426750 | Msa0409090:intron | 35.0% | |
| TTATGCCTGTTTGGATCAAA+TGG | + | chr3_2:49426739-49426758 | None:intergenic | 35.0% | |
| ! | ATTTTCAGTTCCTGCAAAGA+GGG | + | chr3_2:49426991-49427010 | None:intergenic | 35.0% |
| ! | AATTTTCAGTTCCTGCAAAG+AGG | + | chr3_2:49426992-49427011 | None:intergenic | 35.0% |
| CTTTGCAGGAACTGAAAATT+AGG | - | chr3_2:49426992-49427011 | Msa0409090:intron | 35.0% | |
| ! | TTCAGATTGATGGTATGAGA+CGG | + | chr3_2:49427173-49427192 | None:intergenic | 35.0% |
| ! | GAGCTGTAATTTGTCAAATG+CGG | - | chr3_2:49427409-49427428 | Msa0409090:intron | 35.0% |
| ! | GTAATTTGTCAAATGCGGAA+AGG | - | chr3_2:49427414-49427433 | Msa0409090:intron | 35.0% |
| TGAAGACAACCAAAATCTCA+TGG | + | chr3_2:49427506-49427525 | None:intergenic | 35.0% | |
| !! | CGGGGCAAACATTTTTAAAA+TGG | - | chr3_2:49427759-49427778 | Msa0409090:five_prime_UTR | 35.0% |
| ATGAACGGAGAGAATGTGAA+GGG | + | chr3_2:49423224-49423243 | None:intergenic | 40.0% | |
| TATGAACGGAGAGAATGTGA+AGG | + | chr3_2:49423225-49423244 | None:intergenic | 40.0% | |
| GGAAAGGGTTTATGAAACAG+AGG | + | chr3_2:49423255-49423274 | None:intergenic | 40.0% | |
| ATTAGGGTTGGAATTGGGAT+TGG | + | chr3_2:49423282-49423301 | None:intergenic | 40.0% | |
| TTCAGCCATGTCCGTTTATA+GGG | - | chr3_2:49423329-49423348 | Msa0409090:three_prime_UTR | 40.0% | |
| AAGTACCCTATAAACGGACA+TGG | + | chr3_2:49423337-49423356 | None:intergenic | 40.0% | |
| GAATTGATGGAAGAAAGTGG+TGG | + | chr3_2:49423418-49423437 | None:intergenic | 40.0% | |
| !! | GAGGAAAGGTACTGAATTGA+TGG | + | chr3_2:49423431-49423450 | None:intergenic | 40.0% |
| TACGAGGGAGATACCTTATT+GGG | + | chr3_2:49423462-49423481 | None:intergenic | 40.0% | |
| TTACGAGGGAGATACCTTAT+TGG | + | chr3_2:49423463-49423482 | None:intergenic | 40.0% | |
| ! | TTTTCGCAAGTTTGTGCTGT+AGG | - | chr3_2:49423505-49423524 | Msa0409090:three_prime_UTR | 40.0% |
| TTTCGCAAGTTTGTGCTGTA+GGG | - | chr3_2:49423506-49423525 | Msa0409090:three_prime_UTR | 40.0% | |
| TCAATCCTAGACGATGAGTA+TGG | - | chr3_2:49423836-49423855 | Msa0409090:intron | 40.0% | |
| TTGTCCCTCGATTATTTGTC+TGG | - | chr3_2:49424156-49424175 | Msa0409090:CDS | 40.0% | |
| TGTCCCTCGATTATTTGTCT+GGG | - | chr3_2:49424157-49424176 | Msa0409090:CDS | 40.0% | |
| GGAGTCAAGGATGAACTTAT+TGG | + | chr3_2:49424286-49424305 | None:intergenic | 40.0% | |
| TCATCCTTGACTCCAAGATT+TGG | - | chr3_2:49424292-49424311 | Msa0409090:intron | 40.0% | |
| ATCACTTGAAGATTCAGGTG+AGG | + | chr3_2:49424332-49424351 | None:intergenic | 40.0% | |
| TTCATTCTGATCAACTGCCT+TGG | + | chr3_2:49424380-49424399 | None:intergenic | 40.0% | |
| GCAGTTGATCAGAATGAAGA+AGG | - | chr3_2:49424382-49424401 | Msa0409090:intron | 40.0% | |
| AAAGGTGAAGATCAAACCAG+TGG | - | chr3_2:49424406-49424425 | Msa0409090:intron | 40.0% | |
| CAATCTGACAACAGAAAGTG+TGG | - | chr3_2:49424468-49424487 | Msa0409090:intron | 40.0% | |
| GAAGTTGAAGCACAAAGAGA+TGG | - | chr3_2:49424605-49424624 | Msa0409090:intron | 40.0% | |
| AAATAGCCCTCAAGTGTGAA+AGG | + | chr3_2:49425622-49425641 | None:intergenic | 40.0% | |
| GAGAGGATGACTGTAATGTT+AGG | + | chr3_2:49425744-49425763 | None:intergenic | 40.0% | |
| ! | GGGGCTTTTAAGCAAAACTT+AGG | - | chr3_2:49425892-49425911 | Msa0409090:intron | 40.0% |
| TTCATAAGTGTCTGTCACCT+TGG | - | chr3_2:49426113-49426132 | Msa0409090:intron | 40.0% | |
| TGTCACCTTGGATTACTTTC+TGG | - | chr3_2:49426125-49426144 | Msa0409090:intron | 40.0% | |
| AGATTGCTGACATGATCTCA+AGG | + | chr3_2:49426166-49426185 | None:intergenic | 40.0% | |
| CTTTCTGCCAGCAAAATCAA+GGG | + | chr3_2:49426242-49426261 | None:intergenic | 40.0% | |
| ! | GATTAACATCTGCTGCTTAC+AGG | - | chr3_2:49426669-49426688 | Msa0409090:CDS | 40.0% |
| AAGATGGCATTATGCCTGTT+TGG | + | chr3_2:49426748-49426767 | None:intergenic | 40.0% | |
| AGACGGAGAAATATCACGAA+TGG | + | chr3_2:49427156-49427175 | None:intergenic | 40.0% | |
| ACACATCGTGTTCAGATTGA+TGG | + | chr3_2:49427183-49427202 | None:intergenic | 40.0% | |
| CTTTGGTTATATTTGCAGGC+AGG | - | chr3_2:49427220-49427239 | Msa0409090:intron | 40.0% | |
| ACATACCCCACATTAAGTTC+AGG | - | chr3_2:49427574-49427593 | Msa0409090:CDS | 40.0% | |
| AGAGCTCCTGAACTTAATGT+GGG | + | chr3_2:49427583-49427602 | None:intergenic | 40.0% | |
| ATTGGGATTGGAGAGGGAAA+GGG | + | chr3_2:49423270-49423289 | None:intergenic | 45.0% | |
| AATTGGGATTGGAGAGGGAA+AGG | + | chr3_2:49423271-49423290 | None:intergenic | 45.0% | |
| GTTGGAATTGGGATTGGAGA+GGG | + | chr3_2:49423276-49423295 | None:intergenic | 45.0% | |
| CTTCAGCCATGTCCGTTTAT+AGG | - | chr3_2:49423328-49423347 | Msa0409090:three_prime_UTR | 45.0% | |
| ! | AAAGTGGTGGAAAGAGGTTG+TGG | + | chr3_2:49423405-49423424 | None:intergenic | 45.0% |
| ! | TGGAAGAAAGTGGTGGAAAG+AGG | + | chr3_2:49423411-49423430 | None:intergenic | 45.0% |
| TGCTTCCATACTCATCGTCT+AGG | + | chr3_2:49423844-49423863 | None:intergenic | 45.0% | |
| !! | TATGTGGGCGAGTTTTCAAG+TGG | + | chr3_2:49423920-49423939 | None:intergenic | 45.0% |
| TGAAAACTCGCCCACATAAG+TGG | - | chr3_2:49423922-49423941 | Msa0409090:intron | 45.0% | |
| GAAAACTCGCCCACATAAGT+GGG | - | chr3_2:49423923-49423942 | Msa0409090:intron | 45.0% | |
| AAAACTCGCCCACATAAGTG+GGG | - | chr3_2:49423924-49423943 | Msa0409090:intron | 45.0% | |
| AAATGCCGAAATAGCTAGGC+TGG | + | chr3_2:49423985-49424004 | None:intergenic | 45.0% | |
| AGGCAAATGCCGAAATAGCT+AGG | + | chr3_2:49423989-49424008 | None:intergenic | 45.0% | |
| GCAGAGTCCCTCATGTTATT+GGG | + | chr3_2:49424053-49424072 | None:intergenic | 45.0% | |
| AGCAGAGTCCCTCATGTTAT+TGG | + | chr3_2:49424054-49424073 | None:intergenic | 45.0% | |
| CGAGGGACAATACACAATCT+AGG | + | chr3_2:49424146-49424165 | None:intergenic | 45.0% | |
| GGGTCATCACTTGAAGATTC+AGG | + | chr3_2:49424337-49424356 | None:intergenic | 45.0% | |
| GAAGATCAAACCAGTGGATC+AGG | - | chr3_2:49424412-49424431 | Msa0409090:intron | 45.0% | |
| TCAAACCAGTGGATCAGGTT+AGG | - | chr3_2:49424417-49424436 | Msa0409090:intron | 45.0% | |
| CAAACCAGTGGATCAGGTTA+GGG | - | chr3_2:49424418-49424437 | Msa0409090:intron | 45.0% | |
| AGATGGAGAATGTCATGGAC+AGG | - | chr3_2:49424664-49424683 | Msa0409090:intron | 45.0% | |
| GCGGCTTGATCAGATTCTTT+AGG | + | chr3_2:49424912-49424931 | None:intergenic | 45.0% | |
| !! | AAGTGTTTTCAGGAGTGGTG+CGG | + | chr3_2:49424931-49424950 | None:intergenic | 45.0% |
| ACCACTCCTGAAAACACTTC+TGG | - | chr3_2:49424932-49424951 | Msa0409090:intron | 45.0% | |
| !!! | TCCAGAAGTGTTTTCAGGAG+TGG | + | chr3_2:49424936-49424955 | None:intergenic | 45.0% |
| CTCCTGAAAACACTTCTGGA+AGG | - | chr3_2:49424936-49424955 | Msa0409090:intron | 45.0% | |
| !!! | CACCTTCCAGAAGTGTTTTC+AGG | + | chr3_2:49424941-49424960 | None:intergenic | 45.0% |
| GACTGAGAAACAACTTGCAG+AGG | - | chr3_2:49424968-49424987 | Msa0409090:intron | 45.0% | |
| TGAAAGGACGGTGCTCATTT+GGG | + | chr3_2:49425606-49425625 | None:intergenic | 45.0% | |
| GCTAAGAAGTTCATGCTAGG+TGG | + | chr3_2:49425688-49425707 | None:intergenic | 45.0% | |
| GGAGCTAAGAAGTTCATGCT+AGG | + | chr3_2:49425691-49425710 | None:intergenic | 45.0% | |
| ATGAGGACAAGGTTGTTGAG+AGG | + | chr3_2:49425761-49425780 | None:intergenic | 45.0% | |
| TCTCAACAACCTTGTCCTCA+TGG | - | chr3_2:49425760-49425779 | Msa0409090:intron | 45.0% | |
| GATCAGGAGATAGAATCCGA+TGG | - | chr3_2:49425801-49425820 | Msa0409090:intron | 45.0% | |
| ! | GTTCATCGGCCTTTTTCCAT+CGG | + | chr3_2:49425820-49425839 | None:intergenic | 45.0% |
| TATCGGGAGATACGGTTCAT+CGG | + | chr3_2:49425834-49425853 | None:intergenic | 45.0% | |
| TCCGCTCGCAAAAAACCTAT+CGG | + | chr3_2:49425851-49425870 | None:intergenic | 45.0% | |
| AAACCCCACTTAGTGGGATA+TGG | - | chr3_2:49425947-49425966 | Msa0409090:intron | 45.0% | |
| AAGCCATATCCCACTAAGTG+GGG | + | chr3_2:49425953-49425972 | None:intergenic | 45.0% | |
| CAAGCCATATCCCACTAAGT+GGG | + | chr3_2:49425954-49425973 | None:intergenic | 45.0% | |
| GCTGACATGATCTCAAGGTT+TGG | + | chr3_2:49426161-49426180 | None:intergenic | 45.0% | |
| GCTTTCTGCCAGCAAAATCA+AGG | + | chr3_2:49426243-49426262 | None:intergenic | 45.0% | |
| CCAGTCTACTCTCCTAAACA+TGG | + | chr3_2:49426577-49426596 | None:intergenic | 45.0% | |
| CCATGTTTAGGAGAGTAGAC+TGG | - | chr3_2:49426574-49426593 | Msa0409090:CDS | 45.0% | |
| ! | AGCATCGGGTATTTGGAAGA+TGG | + | chr3_2:49426764-49426783 | None:intergenic | 45.0% |
| CACTGTTGGAGTTGTTCTCA+AGG | - | chr3_2:49426798-49426817 | Msa0409090:intron | 45.0% | |
| ! | TGCTTTTAGTCCCTCTTTGC+AGG | - | chr3_2:49426978-49426997 | Msa0409090:intron | 45.0% |
| TACTTCGTCCAGCAGAAGTT+GGG | - | chr3_2:49427263-49427282 | Msa0409090:intron | 45.0% | |
| AGTTGGGGTTACACATGAAG+TGG | - | chr3_2:49427279-49427298 | Msa0409090:intron | 45.0% | |
| GAGCTCCTGAACTTAATGTG+GGG | + | chr3_2:49427582-49427601 | None:intergenic | 45.0% | |
| GAGAGCTCCTGAACTTAATG+TGG | + | chr3_2:49427584-49427603 | None:intergenic | 45.0% | |
| !! | AAATAAAAAATTATAACTTA+GGG | + | chr3_2:49423642-49423661 | None:intergenic | 5.0% |
| !! | AAAATAAAAAATTATAACTT+AGG | + | chr3_2:49423643-49423662 | None:intergenic | 5.0% |
| !!! | ATAAATTTAAACTTTTTTAA+TGG | + | chr3_2:49424102-49424121 | None:intergenic | 5.0% |
| !!! | AATTTATATTTTTTGTTTTT+AGG | + | chr3_2:49427020-49427039 | None:intergenic | 5.0% |
| GGTTGGAATTGGGATTGGAG+AGG | + | chr3_2:49423277-49423296 | None:intergenic | 50.0% | |
| ! | AGAGAGAAGCGTGAAGGTTC+TGG | + | chr3_2:49423370-49423389 | None:intergenic | 50.0% |
| ! | CGAAGAAGAGAGAAGCGTGA+AGG | + | chr3_2:49423376-49423395 | None:intergenic | 50.0% |
| AAACTCGCCCACATAAGTGG+GGG | - | chr3_2:49423925-49423944 | Msa0409090:intron | 50.0% | |
| ATGGGATCCCCCACTTATGT+GGG | + | chr3_2:49423935-49423954 | None:intergenic | 50.0% | |
| TCCCATGTTCGAAACCGAAC+CGG | - | chr3_2:49423949-49423968 | Msa0409090:intron | 50.0% | |
| GGTGTCCAGCCTAGCTATTT+CGG | - | chr3_2:49423977-49423996 | Msa0409090:intron | 50.0% | |
| GTCAGAAGTCCTAGCTCAAC+AGG | + | chr3_2:49424009-49424028 | None:intergenic | 50.0% | |
| TAGACCCTAACCTGATCCAC+TGG | + | chr3_2:49424425-49424444 | None:intergenic | 50.0% | |
| TCTGCGTACTTATGCGGAGA+TGG | - | chr3_2:49424647-49424666 | Msa0409090:intron | 50.0% | |
| TGCGGAGATGGAGAATGTCA+TGG | - | chr3_2:49424659-49424678 | Msa0409090:intron | 50.0% | |
| GGACAGGACTAATCGCAATG+CGG | - | chr3_2:49424680-49424699 | Msa0409090:intron | 50.0% | |
| GAAAGGACGGTGCTCATTTG+GGG | + | chr3_2:49425605-49425624 | None:intergenic | 50.0% | |
| GTGAAAGGACGGTGCTCATT+TGG | + | chr3_2:49425607-49425626 | None:intergenic | 50.0% | |
| CACCGTCCTTTCACACTTGA+GGG | - | chr3_2:49425613-49425632 | Msa0409090:intron | 50.0% | |
| AGCCCTCAAGTGTGAAAGGA+CGG | + | chr3_2:49425618-49425637 | None:intergenic | 50.0% | |
| GATGAACCGTATCTCCCGAT+AGG | - | chr3_2:49425833-49425852 | Msa0409090:intron | 50.0% | |
| CCGCTCGCAAAAAACCTATC+GGG | + | chr3_2:49425850-49425869 | None:intergenic | 50.0% | |
| !!! | CCCGATAGGTTTTTTGCGAG+CGG | - | chr3_2:49425847-49425866 | Msa0409090:intron | 50.0% |
| CTGCTGAAACCCCACTTAGT+GGG | - | chr3_2:49425941-49425960 | Msa0409090:intron | 50.0% | |
| CCAAGCCATATCCCACTAAG+TGG | + | chr3_2:49425955-49425974 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATATGGCT+TGG | - | chr3_2:49425952-49425971 | Msa0409090:intron | 50.0% | |
| ! | CTTAGTGGGATATGGCTTGG+TGG | - | chr3_2:49425955-49425974 | Msa0409090:intron | 50.0% |
| TTTAATGCAAGGGGGTCGCA+TGG | + | chr3_2:49426060-49426079 | None:intergenic | 50.0% | |
| CAGCAAAATCAAGGGCAAGC+TGG | + | chr3_2:49426234-49426253 | None:intergenic | 50.0% | |
| ! | CAGCTTGCCCTTGATTTTGC+TGG | - | chr3_2:49426232-49426251 | Msa0409090:CDS | 50.0% |
| !! | AACATGATGGGTGGCAGCAT+TGG | + | chr3_2:49426267-49426286 | None:intergenic | 50.0% |
| !! | GCTTGGAAGCATCGGGTATT+TGG | + | chr3_2:49426771-49426790 | None:intergenic | 50.0% |
| AGAACAACTCCAACAGTGCC+TGG | + | chr3_2:49426796-49426815 | None:intergenic | 50.0% | |
| GTACTTCGTCCAGCAGAAGT+TGG | - | chr3_2:49427262-49427281 | Msa0409090:intron | 50.0% | |
| ACTTCGTCCAGCAGAAGTTG+GGG | - | chr3_2:49427264-49427283 | Msa0409090:intron | 50.0% | |
| TGTGTAACCCCAACTTCTGC+TGG | + | chr3_2:49427274-49427293 | None:intergenic | 50.0% | |
| TGGGGTTACACATGAAGTGG+AGG | - | chr3_2:49427282-49427301 | Msa0409090:intron | 50.0% | |
| CATGGGATCCCCCACTTATG+TGG | + | chr3_2:49423936-49423955 | None:intergenic | 55.0% | |
| !! | CCCGGTTCGGTTTCGAACAT+GGG | + | chr3_2:49423953-49423972 | None:intergenic | 55.0% |
| CCCATGTTCGAAACCGAACC+GGG | - | chr3_2:49423950-49423969 | Msa0409090:intron | 55.0% | |
| CCATGTTCGAAACCGAACCG+GGG | - | chr3_2:49423951-49423970 | Msa0409090:intron | 55.0% | |
| CGGCATTTGCCTGTTGAGCT+AGG | - | chr3_2:49423997-49424016 | Msa0409090:intron | 55.0% | |
| TGAAGATTCAGGTGAGGCCG+AGG | + | chr3_2:49424326-49424345 | None:intergenic | 55.0% | |
| GCACCGTCCTTTCACACTTG+AGG | - | chr3_2:49425612-49425631 | Msa0409090:intron | 55.0% | |
| CTAAGTGGGGTTTCAGCAGC+AGG | + | chr3_2:49425940-49425959 | None:intergenic | 55.0% | |
| GCTGCTGAAACCCCACTTAG+TGG | - | chr3_2:49425940-49425959 | Msa0409090:intron | 55.0% | |
| ACAACTCCAACAGTGCCTGG+AGG | + | chr3_2:49426793-49426812 | None:intergenic | 55.0% | |
| !! | CCCCGGTTCGGTTTCGAACA+TGG | + | chr3_2:49423954-49423973 | None:intergenic | 60.0% |
| TTCGAAACCGAACCGGGGCA+TGG | - | chr3_2:49423956-49423975 | Msa0409090:intron | 60.0% | |
| !! | CCTGGAGGCTTGGAAGCATC+GGG | + | chr3_2:49426778-49426797 | None:intergenic | 60.0% |
| ! | GCCTGGAGGCTTGGAAGCAT+CGG | + | chr3_2:49426779-49426798 | None:intergenic | 60.0% |
| ! | TCCAAGCCTCCAGGCACTGT+TGG | - | chr3_2:49426784-49426803 | Msa0409090:intron | 60.0% |
| TCCAACAGTGCCTGGAGGCT+TGG | + | chr3_2:49426788-49426807 | None:intergenic | 60.0% | |
| ! | GCGAGTGGTAGCGAGAGTGT+TGG | + | chr3_2:49427720-49427739 | None:intergenic | 60.0% |
| CTGGACACCATGCCCCGGTT+CGG | + | chr3_2:49423966-49423985 | None:intergenic | 65.0% | |
| CTAGGCTGGACACCATGCCC+CGG | + | chr3_2:49423971-49423990 | None:intergenic | 65.0% | |
| CCCGATGCTTCCAAGCCTCC+AGG | - | chr3_2:49426775-49426794 | Msa0409090:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 49423162 | 49427787 | 49423162 | ID=Msa0409090;Name=Msa0409090 |
| chr3_2 | mRNA | 49423162 | 49427787 | 49423162 | ID=Msa0409090-mRNA-1;Parent=Msa0409090;Name=Msa0409090-mRNA-1;_AED=0.28;_eAED=0.28;_QI=174|1|1|1|1|1|6|460|300 |
| chr3_2 | exon | 49423162 | 49423711 | 49423162 | ID=Msa0409090-mRNA-1:exon:9690;Parent=Msa0409090-mRNA-1 |
| chr3_2 | exon | 49424130 | 49424258 | 49424130 | ID=Msa0409090-mRNA-1:exon:9689;Parent=Msa0409090-mRNA-1 |
| chr3_2 | exon | 49425960 | 49426127 | 49425960 | ID=Msa0409090-mRNA-1:exon:9688;Parent=Msa0409090-mRNA-1 |
| chr3_2 | exon | 49426221 | 49426420 | 49426221 | ID=Msa0409090-mRNA-1:exon:9687;Parent=Msa0409090-mRNA-1 |
| chr3_2 | exon | 49426516 | 49426699 | 49426516 | ID=Msa0409090-mRNA-1:exon:9686;Parent=Msa0409090-mRNA-1 |
| chr3_2 | exon | 49427482 | 49427787 | 49427482 | ID=Msa0409090-mRNA-1:exon:9685;Parent=Msa0409090-mRNA-1 |
| chr3_2 | five_prime_UTR | 49427614 | 49427787 | 49427614 | ID=Msa0409090-mRNA-1:five_prime_utr;Parent=Msa0409090-mRNA-1 |
| chr3_2 | CDS | 49427482 | 49427613 | 49427482 | ID=Msa0409090-mRNA-1:cds;Parent=Msa0409090-mRNA-1 |
| chr3_2 | CDS | 49426516 | 49426699 | 49426516 | ID=Msa0409090-mRNA-1:cds;Parent=Msa0409090-mRNA-1 |
| chr3_2 | CDS | 49426221 | 49426420 | 49426221 | ID=Msa0409090-mRNA-1:cds;Parent=Msa0409090-mRNA-1 |
| chr3_2 | CDS | 49425960 | 49426127 | 49425960 | ID=Msa0409090-mRNA-1:cds;Parent=Msa0409090-mRNA-1 |
| chr3_2 | CDS | 49424130 | 49424258 | 49424130 | ID=Msa0409090-mRNA-1:cds;Parent=Msa0409090-mRNA-1 |
| chr3_2 | CDS | 49423622 | 49423711 | 49423622 | ID=Msa0409090-mRNA-1:cds;Parent=Msa0409090-mRNA-1 |
| chr3_2 | three_prime_UTR | 49423162 | 49423621 | 49423162 | ID=Msa0409090-mRNA-1:three_prime_utr;Parent=Msa0409090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
