AlfalfaGEDB | Msa0482130

M. sativa cultivar zhongmu-4 / Msa0482130

KEGG: K14559
GO: -
PFAM: PF04006.15

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0482130	KEH31828.1	86.325	585	48	4	1	553	1	585	0.0	794

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0482130	sp\|Q9FJY5\|MPP10_ARATH	65.278	288	94	3	213	500	235	516	5.69e-111	343

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0482130	A0A072URZ4	86.325	585	48	4	1	553	1	585	0.0	794

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003720	Msa0482130	0.818140	2.289157e-52	-8.615850e-47
Msa0003890	Msa0482130	0.800140	1.657574e-48	-8.615850e-47
Msa0007440	Msa0482130	0.800169	1.635239e-48	-8.615850e-47
Msa0010490	Msa0482130	0.819664	1.031383e-52	-8.615850e-47
Msa0010500	Msa0482130	0.801873	7.332264e-49	-8.615850e-47
Msa0011960	Msa0482130	0.887013	2.071208e-72	-8.615850e-47
Msa0019390	Msa0482130	0.845878	3.085010e-59	-8.615850e-47
Msa0021220	Msa0482130	0.897615	1.183632e-76	-8.615850e-47
Msa0025730	Msa0482130	0.845127	4.929093e-59	-8.615850e-47
Msa0027260	Msa0482130	0.817688	2.896902e-52	-8.615850e-47

Showing 1 to 10 of 458 entries

Previous1 2 3 4 5…46Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0482130	MtrunA17_Chr4g0058931	88.278	546	34	3	1	516	1	546	0.0	748
Msa0482130	MtrunA17_Chr7g0229191	94.118	34	2	0	425	458	61	94	1.35e-13	67.0

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0482130	AT5G66540.1	65.278	288	94	3	213	500	235	516	5.78e-112	343
Msa0482130	AT5G66540.2	65.278	288	94	3	213	500	235	516	5.78e-112	343

Showing 1 to 2 of 2 entries

Previous1Next

Find 138 sgRNAs with CRISPR-Local

Find 411 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAATTACCATCAACT+TGG	0.578509	3_3:+88547287	None:intergenic
AAAGAGAAAGTTAAAGGTGG+TGG	0.487503	3_3:-88551601	Msa0482130:CDS
AAATGTACCTGCTCTGGCAA+TGG	0.529834	3_3:-88547826	Msa0482130:CDS
AACTTCAAATGCACTATTTA+TGG	0.093083	3_3:+88549408	None:intergenic
AACTTGGACTATGCAGGGTG+AGG	0.584934	3_3:-88549554	Msa0482130:intron
AAGACAAAAGGAGGAAGTGA+AGG	0.508745	3_3:-88551688	Msa0482130:CDS
AAGGCAGACAATGCAATTTC+TGG	0.243296	3_3:-88547310	Msa0482130:CDS
AATAAGAAAAGAAAATTTAA+AGG	0.291738	3_3:-88547590	Msa0482130:intron
AATGACAATGGAGCAGAAGT+GGG	0.561560	3_3:+88548233	None:intergenic
AATGCAGCGTTTCTCATATA+AGG	0.243577	3_3:+88547259	None:intergenic

Showing 1 to 10 of 138 entries

Previous1 2 3 4 5…14Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GTTGAAAAGAAGAAGACAAA+AGG	-	chr3_3:88546847-88546866	Msa0482130:intron	30.0%
GAAAAAGAGAAAGTTAAAGG+TGG	-	chr3_3:88546943-88546962	Msa0482130:intron	30.0%
ATTGACTGAGTATTTAGAGA+AGG	-	chr3_3:88546999-88547018	Msa0482130:intron	30.0%
GGAAGATAATTATGAGAAAG+AGG	-	chr3_3:88547023-88547042	Msa0482130:intron	30.0%
TTATGTTACATTGATCGAGT+AGG	-	chr3_3:88547174-88547193	Msa0482130:intron	30.0%
CATTAGCATGTGATATTTAC+AGG	+	chr3_3:88547585-88547604	None:intergenic	30.0%
TATGGCGATACATATGAAAT+TGG	-	chr3_3:88547675-88547694	Msa0482130:CDS	30.0%
ATGGCGATACATATGAAATT+GGG	-	chr3_3:88547676-88547695	Msa0482130:CDS	30.0%
AGTGTAATTGATAGAAGTAG+AGG	-	chr3_3:88548037-88548056	Msa0482130:intron	30.0%
GTGAAATTGTTAAATAGGAC+TGG	-	chr3_3:88548077-88548096	Msa0482130:intron	30.0%

Showing 1 to 10 of 411 entries

Previous1 2 3 4 5…42Next

Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	88546427	88552142	88546427	ID=Msa0482130;Name=Msa0482130
chr3_3	mRNA	88546427	88552142	88546427	ID=Msa0482130-mRNA-1;Parent=Msa0482130;Name=Msa0482130-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0\|0.78\|0.73\|1\|0.78\|0.73\|15\|381\|555
chr3_3	exon	88546427	88546856	88546427	ID=Msa0482130-mRNA-1:exon:25894;Parent=Msa0482130-mRNA-1
chr3_3	exon	88547226	88547376	88547226	ID=Msa0482130-mRNA-1:exon:25893;Parent=Msa0482130-mRNA-1
chr3_3	exon	88547591	88547732	88547591	ID=Msa0482130-mRNA-1:exon:25892;Parent=Msa0482130-mRNA-1
chr3_3	exon	88547821	88547874	88547821	ID=Msa0482130-mRNA-1:exon:25891;Parent=Msa0482130-mRNA-1
chr3_3	exon	88547970	88548041	88547970	ID=Msa0482130-mRNA-1:exon:25890;Parent=Msa0482130-mRNA-1
chr3_3	exon	88548211	88548279	88548211	ID=Msa0482130-mRNA-1:exon:25889;Parent=Msa0482130-mRNA-1
chr3_3	exon	88548407	88548448	88548407	ID=Msa0482130-mRNA-1:exon:25888;Parent=Msa0482130-mRNA-1
chr3_3	exon	88548547	88548615	88548547	ID=Msa0482130-mRNA-1:exon:25887;Parent=Msa0482130-mRNA-1
chr3_3	exon	88549312	88549449	88549312	ID=Msa0482130-mRNA-1:exon:25886;Parent=Msa0482130-mRNA-1
chr3_3	exon	88549555	88549665	88549555	ID=Msa0482130-mRNA-1:exon:25885;Parent=Msa0482130-mRNA-1
chr3_3	exon	88549815	88549917	88549815	ID=Msa0482130-mRNA-1:exon:25884;Parent=Msa0482130-mRNA-1
chr3_3	exon	88551217	88551299	88551217	ID=Msa0482130-mRNA-1:exon:25883;Parent=Msa0482130-mRNA-1
chr3_3	exon	88551471	88551713	88551471	ID=Msa0482130-mRNA-1:exon:25882;Parent=Msa0482130-mRNA-1
chr3_3	exon	88551723	88551961	88551723	ID=Msa0482130-mRNA-1:exon:25881;Parent=Msa0482130-mRNA-1
chr3_3	exon	88552040	88552142	88552040	ID=Msa0482130-mRNA-1:exon:25880;Parent=Msa0482130-mRNA-1
chr3_3	CDS	88552040	88552142	88552040	ID=Msa0482130-mRNA-1:cds;Parent=Msa0482130-mRNA-1
chr3_3	CDS	88551723	88551961	88551723	ID=Msa0482130-mRNA-1:cds;Parent=Msa0482130-mRNA-1
chr3_3	CDS	88551471	88551713	88551471	ID=Msa0482130-mRNA-1:cds;Parent=Msa0482130-mRNA-1
chr3_3	CDS	88551217	88551299	88551217	ID=Msa0482130-mRNA-1:cds;Parent=Msa0482130-mRNA-1
chr3_3	CDS	88549815	88549917	88549815	ID=Msa0482130-mRNA-1:cds;Parent=Msa0482130-mRNA-1
chr3_3	CDS	88549555	88549665	88549555	ID=Msa0482130-mRNA-1:cds;Parent=Msa0482130-mRNA-1
chr3_3	CDS	88549312	88549449	88549312	ID=Msa0482130-mRNA-1:cds;Parent=Msa0482130-mRNA-1
chr3_3	CDS	88548547	88548615	88548547	ID=Msa0482130-mRNA-1:cds;Parent=Msa0482130-mRNA-1
chr3_3	CDS	88548407	88548448	88548407	ID=Msa0482130-mRNA-1:cds;Parent=Msa0482130-mRNA-1
chr3_3	CDS	88548211	88548279	88548211	ID=Msa0482130-mRNA-1:cds;Parent=Msa0482130-mRNA-1
chr3_3	CDS	88547970	88548041	88547970	ID=Msa0482130-mRNA-1:cds;Parent=Msa0482130-mRNA-1
chr3_3	CDS	88547821	88547874	88547821	ID=Msa0482130-mRNA-1:cds;Parent=Msa0482130-mRNA-1
chr3_3	CDS	88547591	88547732	88547591	ID=Msa0482130-mRNA-1:cds;Parent=Msa0482130-mRNA-1
chr3_3	CDS	88547226	88547376	88547226	ID=Msa0482130-mRNA-1:cds;Parent=Msa0482130-mRNA-1
chr3_3	CDS	88546808	88546856	88546808	ID=Msa0482130-mRNA-1:cds;Parent=Msa0482130-mRNA-1
chr3_3	three_prime_UTR	88546427	88546807	88546427	ID=Msa0482130-mRNA-1:three_prime_utr;Parent=Msa0482130-mRNA-1

Gene Sequence

>Msa0482130

ATGGCCAACACAAACGACGCCGGCGTAGAAGCCTTACGCCGTCTGCAACAAATCGATCCACCTTCATTGCTCGCTCCAAACCCATCGGTTTCCGAAACCGCTCGTTACGATGCTGAGCAGATTTGGCATCAAATTGATCTTCAATCACAGCCGCTTTTGTCCACTCTTCGTCGCCGGTTGAATCAGTTTGTTAAAAATCCGGAAGAGATTGCACAGTTCAAGGTTCCTTTGGATGTTGCGAAGAAGACGGAGATAAAGAAGAGAGTGGAGTTAGAAGAGGAAGAAAGCGATGATTTTGATGAGGAATTGGATGATGAAGATGATGAGGATGATTTTGAAGGTAAGAAGACAAAAGGAGGAAGTGAAGGTGAAGATGATTTAGAAGAAGAAGATGATGAAGATGAAGACGTTGAGGGAGATGAGGAGGATGAAAAAGAGAAAGTTAAAGGTGGTGGAATTGAGGATAAATTTTTGAAAATAGATGAATTGACTGAGTATTTAGAGAAGGAGGAAGATAATTATGAGAAAGAGGATGAGATGGATGACGCTGATGAAGACAGTGAAGAAGATGATGAACTCGAGAAGGCTGGTGAGTTTGAGATGGACGATGAGGAGGATGACGATGAAGATGAAGAAGATGAAGAGGCAGAGGATATGGGAAATGCTAGGTATGAAGACTTCTTTGGAGGTAAAAAAGAAAAGGGCTCAATAAGAAAAGATCAATTGCTTGAAGTTTCTGGCGATGAAGATGACATGGAATCAGACAAACAGAAGAAAAGGACTGCTTCTACCTATGAAAAGCAGCGGGAAAAAATTCAATCAAAGATAGAGCTGATGGAGAAAGCTAATGTAGAGCCAAAAACTTGGACTATGCAGGGTGAGGTAACTGCTTCAAAGAGACCCATAAATAGTGCATTTGAAGTTGATCTTGATTTTGAGCATAATGTGAGACCTACACCTGTAATCACCGAGGAGGTTACAGCTTCAATTGAGGAGATGATCCAGAAAAAGATTGTTGAGGGGCTTTTTAACGACGTGCAAAGGGCTCCTAAGTTGCCATCGAAAGCGCCTCGAGAAGTTAAACAATTGGATGATAATAAAAGCGGGCAGGGTCTTGCAGATCTCTATGAGCAAGAGTATGTTCAGAAGATTGACCCCACTTCTGCTCCATTGTCATTCAAAGATGAACTAAAAAATGAGGCAAGCACACTGTTTAAGAAAATCTGTCTGAAGCTGGATGCCCTTTCTCATTTCAACTTTGCTCCAAAACCTGTTATAGAGGACATGTCCTTCCAAACAAATGTACCTGCTCTGGCAATGGAAGAGATTGCTCCTGTGGCTGTTTCAGATGCTGCTATGCTGGCTCCTGAGGAGGTCTTTGATGGGAAGGGTGATGTTAAGGAAGAAGCAGAACTTACACAGGCAGAAAGGAAAAGGAGGAGAGCTAATAAGAAAAGAAAATTTAAAGCTGAGGCAGTAAACAAGTTGGAAAAGAAGGCAAGGTCGGAAAAAAAGGCAGACAATGCAATTTCTGGCCAAGTTGATGGTAATTTCTTTTTATACCCTTATATGAGAAACGCTGCATTAACCTCACTTCTGCTGTTGAATTTGTCTCGCATGCTAAGCTCCATGCCATATTTCACAGGAGTGCTTACACAAGCTGCGTAA

Protein sequence

>Msa0482130

MANTNDAGVEALRRLQQIDPPSLLAPNPSVSETARYDAEQIWHQIDLQSQPLLSTLRRRLNQFVKNPEEIAQFKVPLDVAKKTEIKKRVELEEEESDDFDEELDDEDDEDDFEGKKTKGGSEGEDDLEEEDDEDEDVEGDEEDEKEKVKGGGIEDKFLKIDELTEYLEKEEDNYEKEDEMDDADEDSEEDDELEKAGEFEMDDEEDDDEDEEDEEAEDMGNARYEDFFGGKKEKGSIRKDQLLEVSGDEDDMESDKQKKRTASTYEKQREKIQSKIELMEKANVEPKTWTMQGEVTASKRPINSAFEVDLDFEHNVRPTPVITEEVTASIEEMIQKKIVEGLFNDVQRAPKLPSKAPREVKQLDDNKSGQGLADLYEQEYVQKIDPTSAPLSFKDELKNEASTLFKKICLKLDALSHFNFAPKPVIEDMSFQTNVPALAMEEIAPVAVSDAAMLAPEEVFDGKGDVKEEAELTQAERKRRRANKKRKFKAEAVNKLEKKARSEKKADNAISGQVDGNFFLYPYMRNAALTSLLLLNLSRMLSSMPYFTGVLTQAA*