Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0325590 | XP_003595555.1 | 92.012 | 338 | 15 | 1 | 1 | 326 | 1 | 338 | 0.0 | 616 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0325590 | sp|Q6TNS2|PK1IP_DANRE | 32.026 | 306 | 182 | 5 | 6 | 297 | 11 | 304 | 1.23e-49 | 172 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011960 | Msa0325590 | 0.822216 | 2.666947e-53 | -8.615850e-47 |
| Msa0019390 | Msa0325590 | 0.808618 | 2.834313e-50 | -8.615850e-47 |
| Msa0021220 | Msa0325590 | 0.828536 | 8.515469e-55 | -8.615850e-47 |
| Msa0033950 | Msa0325590 | 0.847360 | 1.214633e-59 | -8.615850e-47 |
| Msa0034030 | Msa0325590 | 0.842106 | 3.165384e-58 | -8.615850e-47 |
| Msa0043660 | Msa0325590 | 0.848835 | 4.756576e-60 | -8.615850e-47 |
| Msa0048550 | Msa0325590 | 0.842432 | 2.595530e-58 | -8.615850e-47 |
| Msa0067630 | Msa0325590 | 0.820837 | 5.554727e-53 | -8.615850e-47 |
| Msa0070700 | Msa0325590 | 0.816422 | 5.574975e-52 | -8.615850e-47 |
| Msa0105620 | Msa0325590 | 0.802361 | 5.817965e-49 | -8.615850e-47 |
| Msa0115130 | Msa0325590 | 0.808635 | 2.811022e-50 | -8.615850e-47 |
| Msa0115400 | Msa0325590 | 0.807815 | 4.204083e-50 | -8.615850e-47 |
| Msa0118590 | Msa0325590 | 0.806187 | 9.292661e-50 | -8.615850e-47 |
| Msa0123360 | Msa0325590 | 0.806362 | 8.534871e-50 | -8.615850e-47 |
| Msa0128050 | Msa0325590 | 0.818522 | 1.876408e-52 | -8.615850e-47 |
| Msa0137550 | Msa0325590 | 0.854842 | 9.398736e-62 | -8.615850e-47 |
| Msa0139350 | Msa0325590 | 0.840634 | 7.727401e-58 | -8.615850e-47 |
| Msa0141660 | Msa0325590 | 0.812005 | 5.269499e-51 | -8.615850e-47 |
| Msa0144370 | Msa0325590 | 0.823646 | 1.238219e-53 | -8.615850e-47 |
| Msa0159170 | Msa0325590 | 0.855915 | 4.577055e-62 | -8.615850e-47 |
| Msa0168230 | Msa0325590 | 0.827077 | 1.909305e-54 | -8.615850e-47 |
| Msa0189300 | Msa0325590 | 0.807730 | 4.382659e-50 | -8.615850e-47 |
| Msa0325590 | Msa0388700 | 0.831041 | 2.090127e-55 | -8.615850e-47 |
| Msa0325590 | Msa0397070 | 0.800138 | 1.658731e-48 | -8.615850e-47 |
| Msa0325590 | Msa0398810 | 0.812389 | 4.345245e-51 | -8.615850e-47 |
| Msa0325590 | Msa0409090 | 0.824533 | 7.665943e-54 | -8.615850e-47 |
| Msa0325590 | Msa0446050 | 0.803607 | 3.216013e-49 | -8.615850e-47 |
| Msa0325590 | Msa0482130 | 0.862671 | 4.297449e-64 | -8.615850e-47 |
| Msa0325590 | Msa0486650 | 0.808405 | 3.148350e-50 | -8.615850e-47 |
| Msa0325590 | Msa0489410 | 0.809908 | 1.499848e-50 | -8.615850e-47 |
| Msa0325590 | Msa0497210 | 0.813494 | 2.488184e-51 | -8.615850e-47 |
| Msa0325590 | Msa0502090 | 0.824995 | 5.964754e-54 | -8.615850e-47 |
| Msa0325590 | Msa0542090 | 0.843677 | 1.209377e-58 | -8.615850e-47 |
| Msa0325590 | Msa0542130 | 0.843977 | 1.005303e-58 | -8.615850e-47 |
| Msa0325590 | Msa0566100 | 0.801055 | 1.078390e-48 | -8.615850e-47 |
| Msa0325590 | Msa0581280 | 0.807560 | 4.762675e-50 | -8.615850e-47 |
| Msa0325590 | Msa0605000 | 0.821549 | 3.805236e-53 | -8.615850e-47 |
| Msa0325590 | Msa0648780 | 0.844264 | 8.418357e-59 | -8.615850e-47 |
| Msa0325590 | Msa0660850 | 0.825741 | 3.973135e-54 | -8.615850e-47 |
| Msa0325590 | Msa0685140 | 0.832610 | 8.566700e-56 | -8.615850e-47 |
| Msa0325590 | Msa0689260 | 0.831783 | 1.372632e-55 | -8.615850e-47 |
| Msa0325590 | Msa0709040 | 0.824435 | 8.085641e-54 | -8.615850e-47 |
| Msa0325590 | Msa0709730 | 0.812401 | 4.318934e-51 | -8.615850e-47 |
| Msa0325590 | Msa0711780 | 0.814814 | 1.272066e-51 | -8.615850e-47 |
| Msa0325590 | Msa0715650 | 0.837953 | 3.833790e-57 | -8.615850e-47 |
| Msa0325590 | Msa0719420 | 0.822459 | 2.342303e-53 | -8.615850e-47 |
| Msa0325590 | Msa0719610 | 0.850380 | 1.762847e-60 | -8.615850e-47 |
| Msa0325590 | Msa0754380 | 0.842380 | 2.678652e-58 | -8.615850e-47 |
| Msa0325590 | Msa0757940 | 0.825907 | 3.628049e-54 | -8.615850e-47 |
| Msa0325590 | Msa0763330 | 0.876495 | 1.334775e-68 | -8.615850e-47 |
| Msa0325590 | Msa0772480 | 0.838973 | 2.091553e-57 | -8.615850e-47 |
| Msa0325590 | Msa0789680 | 0.825590 | 4.314228e-54 | -8.615850e-47 |
| Msa0325590 | Msa0794670 | 0.804980 | 1.664710e-49 | -8.615850e-47 |
| Msa0325590 | Msa0795820 | 0.802300 | 5.988994e-49 | -8.615850e-47 |
| Msa0325590 | Msa0798440 | 0.835220 | 1.904942e-56 | -8.615850e-47 |
| Msa0325590 | Msa0799260 | 0.835130 | 2.006614e-56 | -8.615850e-47 |
| Msa0325590 | Msa0799310 | 0.830677 | 2.566853e-55 | -8.615850e-47 |
| Msa0325590 | Msa0802410 | 0.822232 | 2.644779e-53 | -8.615850e-47 |
| Msa0325590 | Msa0830040 | 0.850661 | 1.470362e-60 | -8.615850e-47 |
| Msa0325590 | Msa0830540 | 0.834205 | 3.429700e-56 | -8.615850e-47 |
| Msa0325590 | Msa0869130 | 0.822982 | 1.770200e-53 | -8.615850e-47 |
| Msa0325590 | Msa0909950 | 0.808020 | 3.802262e-50 | -8.615850e-47 |
| Msa0325590 | Msa0932840 | 0.814229 | 1.713151e-51 | -8.615850e-47 |
| Msa0325590 | Msa0945440 | 0.837127 | 6.244588e-57 | -8.615850e-47 |
| Msa0325590 | Msa0987370 | 0.813718 | 2.221111e-51 | -8.615850e-47 |
| Msa0325590 | Msa0989540 | 0.821409 | 4.101332e-53 | -8.615850e-47 |
| Msa0325590 | Msa1128570 | 0.805606 | 1.231009e-49 | -8.615850e-47 |
| Msa0325590 | Msa1153060 | 0.873456 | 1.450007e-67 | -8.615850e-47 |
| Msa0325590 | Msa1160590 | 0.841812 | 3.787100e-58 | -8.615850e-47 |
| Msa0325590 | Msa1174470 | 0.827021 | 1.969034e-54 | -8.615850e-47 |
| Msa0325590 | Msa1181250 | 0.816805 | 4.575552e-52 | -8.615850e-47 |
| Msa0325590 | Msa1181330 | 0.816709 | 4.809663e-52 | -8.615850e-47 |
| Msa0325590 | Msa1209200 | 0.800149 | 1.649948e-48 | -8.615850e-47 |
| Msa0325590 | Msa1209260 | 0.853935 | 1.718926e-61 | -8.615850e-47 |
| Msa0325590 | Msa1213480 | 0.805085 | 1.582907e-49 | -8.615850e-47 |
| Msa0325590 | Msa1266990 | 0.825305 | 5.038514e-54 | -8.615850e-47 |
| Msa0325590 | Msa1300380 | 0.802256 | 6.116455e-49 | -8.615850e-47 |
| Msa0325590 | Msa1356400 | 0.820267 | 7.505998e-53 | -8.615850e-47 |
| Msa0325590 | Msa1358250 | 0.830271 | 3.225327e-55 | -8.615850e-47 |
| Msa0325590 | Msa1384190 | 0.837821 | 4.145700e-57 | -8.615850e-47 |
| Msa0325590 | Msa1384880 | 0.806921 | 6.505350e-50 | -8.615850e-47 |
| Msa0325590 | Msa1392780 | 0.825292 | 5.074809e-54 | -8.615850e-47 |
| Msa0325590 | Msa1400220 | 0.845185 | 4.753412e-59 | -8.615850e-47 |
| Msa0325590 | Msa1403420 | 0.813349 | 2.677615e-51 | -8.615850e-47 |
| Msa0325590 | Msa1419870 | 0.839749 | 1.315578e-57 | -8.615850e-47 |
| Msa0325590 | Msa1429120 | 0.831750 | 1.398323e-55 | -8.615850e-47 |
| Msa0325590 | Msa1457920 | 0.823720 | 1.189810e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0325590 | MtrunA17_Chr2g0303901 | 92.012 | 338 | 15 | 1 | 1 | 326 | 1 | 338 | 0.0 | 616 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0325590 | AT1G65030.1 | 61.290 | 341 | 106 | 7 | 7 | 321 | 1 | 341 | 1.47e-142 | 406 |
Find 107 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGGTTAGGGTTTGGGAATT+AGG | 0.178314 | 2_4:-33249890 | None:intergenic |
| TGCATTATTCTTTCCAGCTT+GGG | 0.236996 | 2_4:-33252932 | None:intergenic |
| GAAAAGAGGGGTTAGGGTTT+GGG | 0.244603 | 2_4:-33249897 | None:intergenic |
| AGAAAAGAGGGGTTAGGGTT+TGG | 0.250963 | 2_4:-33249898 | None:intergenic |
| GGGTTAGGGTTTGGGAATTA+GGG | 0.267977 | 2_4:-33249889 | None:intergenic |
| CTTTCCAGCTTGGGGTTGTT+TGG | 0.275777 | 2_4:-33252923 | None:intergenic |
| GAGGTTAGGTGGGGAGTAAA+AGG | 0.307128 | 2_4:-33250077 | None:intergenic |
| GCTCATGCTGCCCGTGTAAA+AGG | 0.308669 | 2_4:+33252211 | Msa0325590:CDS |
| CTGCATTATTCTTTCCAGCT+TGG | 0.335294 | 2_4:-33252933 | None:intergenic |
| TGATCTTGCTATTCATCCTT+CGG | 0.349769 | 2_4:+33250310 | Msa0325590:CDS |
| GATCTTGCTATTCATCCTTC+GGG | 0.350182 | 2_4:+33250311 | Msa0325590:CDS |
| TCAAGGTTGACATGCCTTGC+TGG | 0.365058 | 2_4:+33252379 | Msa0325590:CDS |
| GAGGGAACCGAGGGAGGAGG+AGG | 0.382811 | 2_4:-33250023 | None:intergenic |
| GGAACCGAGGGAGGAGGAGG+CGG | 0.386061 | 2_4:-33250020 | None:intergenic |
| CGGTGGAGGAGTGGTGGTTG+AGG | 0.386759 | 2_4:-33250042 | None:intergenic |
| AGATTGCGTTGACTGTTTCC+AGG | 0.389155 | 2_4:+33250336 | Msa0325590:CDS |
| TAGAAAGAGTCCCCATCTAA+TGG | 0.391806 | 2_4:-33253216 | None:intergenic |
| GAGGAAAAGGGAGGTTAGGT+GGG | 0.394400 | 2_4:-33250087 | None:intergenic |
| GTTCATACGAACGTTTCATC+TGG | 0.399920 | 2_4:+33249852 | Msa0325590:CDS |
| GAGATGGGTAGGAGAAAAGA+GGG | 0.404768 | 2_4:-33249910 | None:intergenic |
| GAGACGAGGTTACGAGGAAA+AGG | 0.408415 | 2_4:-33250100 | None:intergenic |
| GGTAGGAGAAAAGAGGGGTT+AGG | 0.409991 | 2_4:-33249904 | None:intergenic |
| CTGATGGGAGTATACGTGTA+TGG | 0.422857 | 2_4:+33252299 | Msa0325590:CDS |
| ACGCTTTCTGTTCATAAGAA+AGG | 0.436563 | 2_4:+33250281 | Msa0325590:CDS |
| GTAGGAGAAAAGAGGGGTTA+GGG | 0.439159 | 2_4:-33249903 | None:intergenic |
| TTGATTAGGGAGAGATGAGA+TGG | 0.439330 | 2_4:-33249926 | None:intergenic |
| CAGATGATGCAGATGCTACT+AGG | 0.441503 | 2_4:-33252279 | None:intergenic |
| CTCTCCGCCTCCTCCTCCCT+CGG | 0.441939 | 2_4:+33250016 | Msa0325590:CDS |
| GTTGAGGGAACCGAGGGAGG+AGG | 0.443302 | 2_4:-33250026 | None:intergenic |
| AGGCGGAGAGGTTGTAGAGA+TGG | 0.447658 | 2_4:-33250003 | None:intergenic |
| GGAGAGGGCGGTGACGGTGG+AGG | 0.448002 | 2_4:-33250056 | None:intergenic |
| CACATAGAATTGCTAGCATA+AGG | 0.450173 | 2_4:-33253070 | None:intergenic |
| TGAGATTGTTAATGTTCATC+AGG | 0.452416 | 2_4:+33250481 | Msa0325590:CDS |
| TCCAACTCCGTCGTAGCATC+CGG | 0.471871 | 2_4:+33249962 | Msa0325590:CDS |
| CAGAATGGACTCCTCTATAC+AGG | 0.475279 | 2_4:+33252121 | Msa0325590:intron |
| TGAGATGGGTAGGAGAAAAG+AGG | 0.477219 | 2_4:-33249911 | None:intergenic |
| TTCATACGAACGTTTCATCT+GGG | 0.479601 | 2_4:+33249853 | Msa0325590:CDS |
| GCATTATTCTTTCCAGCTTG+GGG | 0.481752 | 2_4:-33252931 | None:intergenic |
| TTACGAGGAAAAGGGAGGTT+AGG | 0.488111 | 2_4:-33250091 | None:intergenic |
| TGATTAGGGAGAGATGAGAT+GGG | 0.488752 | 2_4:-33249925 | None:intergenic |
| TAGGGAGAGATGAGATGGGT+AGG | 0.490422 | 2_4:-33249921 | None:intergenic |
| GATCCTCACCGCCTGTATAG+AGG | 0.491284 | 2_4:-33252132 | None:intergenic |
| ATAAGGTGCACAGATTTATG+AGG | 0.491335 | 2_4:-33253053 | None:intergenic |
| TCTTTGCGCCGCACCTGCTA+AGG | 0.492670 | 2_4:+33250550 | Msa0325590:CDS |
| ATGCTAGCAATTCTATGTGA+TGG | 0.499276 | 2_4:+33253074 | Msa0325590:three_prime_UTR |
| ATTGTGAGGTTTGATGAGTC+TGG | 0.501240 | 2_4:+33250434 | Msa0325590:CDS |
| GATTGTGTCGTCGGAGCCGC+CGG | 0.505004 | 2_4:-33249981 | None:intergenic |
| CGAGGAAAAGGGAGGTTAGG+TGG | 0.505307 | 2_4:-33250088 | None:intergenic |
| GGGCGGTGACGGTGGAGGAG+TGG | 0.509611 | 2_4:-33250051 | None:intergenic |
| GATGCAGATGCTACTAGGTA+TGG | 0.519794 | 2_4:-33252274 | None:intergenic |
| GTAAAAGGAGAGGGCGGTGA+CGG | 0.526436 | 2_4:-33250062 | None:intergenic |
| TGCTACGACGGAGTTGGAAA+CGG | 0.531881 | 2_4:-33249957 | None:intergenic |
| AGAAGAATAAGTCTAGTAGC+AGG | 0.533234 | 2_4:+33249830 | Msa0325590:CDS |
| AAAGGAGAGGGCGGTGACGG+TGG | 0.536855 | 2_4:-33250059 | None:intergenic |
| CTATGGTGAATCTTGTTCGT+GGG | 0.538294 | 2_4:+33250372 | Msa0325590:CDS |
| CGGTGACGGTGGAGGAGTGG+TGG | 0.539307 | 2_4:-33250048 | None:intergenic |
| GCCGGATGCTACGACGGAGT+TGG | 0.539917 | 2_4:-33249963 | None:intergenic |
| CGAGGGAGGAGGAGGCGGAG+AGG | 0.541004 | 2_4:-33250015 | None:intergenic |
| TGAGGATGCTAGGTTGTTGA+TGG | 0.542316 | 2_4:+33250505 | Msa0325590:CDS |
| CATAGCAAAACAACAATCCC+TGG | 0.549366 | 2_4:-33250354 | None:intergenic |
| GCGGCGCAAAGAACACGTTT+CGG | 0.550695 | 2_4:-33250539 | None:intergenic |
| GGTGGAGGAGTGGTGGTTGA+GGG | 0.551062 | 2_4:-33250041 | None:intergenic |
| GCAGCCAAACAACCCCAAGC+TGG | 0.551479 | 2_4:+33252919 | Msa0325590:intron |
| GTAGAGATGGATTGTGTCGT+CGG | 0.552251 | 2_4:-33249990 | None:intergenic |
| GATTGCGTTGACTGTTTCCA+GGG | 0.552606 | 2_4:+33250337 | Msa0325590:CDS |
| TTCATCAGGCTGAGGATGCT+AGG | 0.555360 | 2_4:+33250495 | Msa0325590:CDS |
| AGCTGCATATTGCATAGAAG+AGG | 0.556429 | 2_4:+33252189 | Msa0325590:CDS |
| AAGGGAGCCGTCAGCGTCAG+CGG | 0.562811 | 2_4:-33250122 | None:intergenic |
| GTAGCATCTGCATCATCTGA+TGG | 0.562837 | 2_4:+33252283 | Msa0325590:CDS |
| GCTATGGTGAATCTTGTTCG+TGG | 0.565161 | 2_4:+33250371 | Msa0325590:CDS |
| TGTGTCTTACACTCAGCTAG+TGG | 0.567537 | 2_4:-33252355 | None:intergenic |
| TGTTAATGTTCATCAGGCTG+AGG | 0.567574 | 2_4:+33250487 | Msa0325590:CDS |
| TAGCATCTGCATCATCTGAT+GGG | 0.576284 | 2_4:+33252284 | Msa0325590:CDS |
| CTCGTCTCCGCTGACGCTGA+CGG | 0.579738 | 2_4:+33250115 | Msa0325590:CDS |
| GTGGTGGTTGAGGGAACCGA+GGG | 0.580263 | 2_4:-33250032 | None:intergenic |
| GTGGTTGAGGGAACCGAGGG+AGG | 0.580308 | 2_4:-33250029 | None:intergenic |
| ACGTGTATGGGATGTTCGAA+TGG | 0.587534 | 2_4:+33252312 | Msa0325590:CDS |
| AGACGAGGTTACGAGGAAAA+GGG | 0.587722 | 2_4:-33250099 | None:intergenic |
| GACGGAGTTGGAAACGGCGA+CGG | 0.590300 | 2_4:-33249951 | None:intergenic |
| AACACAAACCTTAGCAGGTG+CGG | 0.595333 | 2_4:-33250558 | None:intergenic |
| GTGCTCAGTGATGAGGCTAC+AGG | 0.597789 | 2_4:+33252241 | Msa0325590:CDS |
| AGGAAAAGGGAGGTTAGGTG+GGG | 0.602689 | 2_4:-33250086 | None:intergenic |
| CGTCAGCGTCAGCGGAGACG+AGG | 0.606149 | 2_4:-33250114 | None:intergenic |
| AGGTGGGGAGTAAAAGGAGA+GGG | 0.606990 | 2_4:-33250071 | None:intergenic |
| TCATACGAACGTTTCATCTG+GGG | 0.608441 | 2_4:+33249854 | Msa0325590:CDS |
| AACTCCGTCGTAGCATCCGG+CGG | 0.608827 | 2_4:+33249965 | Msa0325590:CDS |
| TGGTGAATCTTGTTCGTGGG+AGG | 0.618920 | 2_4:+33250375 | Msa0325590:CDS |
| ATAAGGAAGCGTCGATTGTG+AGG | 0.619446 | 2_4:+33250420 | Msa0325590:CDS |
| TGGGGAGTAAAAGGAGAGGG+CGG | 0.621028 | 2_4:-33250068 | None:intergenic |
| GGATCGAAATATCACAGCAT+GGG | 0.621813 | 2_4:+33252150 | Msa0325590:CDS |
| AGTGGTGGTTGAGGGAACCG+AGG | 0.622207 | 2_4:-33250033 | None:intergenic |
| ACAGCATGGGACTTAAAGAG+TGG | 0.625874 | 2_4:+33252163 | Msa0325590:CDS |
| AGGATCGAAATATCACAGCA+TGG | 0.626271 | 2_4:+33252149 | Msa0325590:CDS |
| TGATGGGAGTATACGTGTAT+GGG | 0.626292 | 2_4:+33252300 | Msa0325590:CDS |
| TAGGTGGGGAGTAAAAGGAG+AGG | 0.630023 | 2_4:-33250072 | None:intergenic |
| GGAGCCGCCGGATGCTACGA+CGG | 0.632498 | 2_4:-33249969 | None:intergenic |
| ATTTCAGACACGATCCAGCA+AGG | 0.634495 | 2_4:-33252393 | None:intergenic |
| TAAGGTGCACAGATTTATGA+GGG | 0.637571 | 2_4:-33253052 | None:intergenic |
| ATCTTGCTATTCATCCTTCG+GGG | 0.658103 | 2_4:+33250312 | Msa0325590:CDS |
| GTCAACGCAATCTTCCCCGA+AGG | 0.662687 | 2_4:-33250326 | None:intergenic |
| TATTGTTGTGCTCAGTGATG+AGG | 0.664398 | 2_4:+33252234 | Msa0325590:CDS |
| AGATGGGTAGGAGAAAAGAG+GGG | 0.671108 | 2_4:-33249909 | None:intergenic |
| CGAGGTTACGAGGAAAAGGG+AGG | 0.678360 | 2_4:-33250096 | None:intergenic |
| TCAGCGGAGACGAGGTTACG+AGG | 0.684369 | 2_4:-33250106 | None:intergenic |
| AATGGACTCCTCTATACAGG+CGG | 0.691777 | 2_4:+33252124 | Msa0325590:CDS |
| CTGAGTGTAAGACACAGTCA+AGG | 0.696685 | 2_4:+33252362 | Msa0325590:CDS |
| ACTCCTCTATACAGGCGGTG+AGG | 0.731025 | 2_4:+33252129 | Msa0325590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTATATAAATATAATAAG+TGG | - | chr2_4:33251171-33251190 | None:intergenic | 10.0% |
| !! | TCAAATAAAATATTATAAAG+GGG | - | chr2_4:33251744-33251763 | None:intergenic | 10.0% |
| !!! | ATTGTTTTAATTCATTTTAG+AGG | + | chr2_4:33250609-33250628 | Msa0325590:intron | 15.0% |
| !! | TAATTTAAGGACTAAATTAA+AGG | - | chr2_4:33250663-33250682 | None:intergenic | 15.0% |
| !!! | ATAACTTATTTTTATGAGAA+CGG | - | chr2_4:33250922-33250941 | None:intergenic | 15.0% |
| !! | AATTGAGAAATTTCATAATT+AGG | + | chr2_4:33251143-33251162 | Msa0325590:intron | 15.0% |
| !! | ATTGAGAAATTTCATAATTA+GGG | + | chr2_4:33251144-33251163 | Msa0325590:intron | 15.0% |
| !!! | TCTTACATAATAAAACATTT+TGG | - | chr2_4:33252740-33252759 | None:intergenic | 15.0% |
| !!! | ATTTTTCAATTAAGATTGCA+AGG | + | chr2_4:33250839-33250858 | Msa0325590:intron | 20.0% |
| !! | ATGACTAAAAAAGAATCATT+TGG | - | chr2_4:33250968-33250987 | None:intergenic | 20.0% |
| !!! | CCTCTAATATTTTAATATCA+AGG | - | chr2_4:33251088-33251107 | None:intergenic | 20.0% |
| !! | CCTTGATATTAAAATATTAG+AGG | + | chr2_4:33251085-33251104 | Msa0325590:intron | 20.0% |
| !!! | ATAATTTACTAGCAAGTTTT+AGG | + | chr2_4:33251254-33251273 | Msa0325590:intron | 20.0% |
| !!! | ATAATCAGGGTTTTATAAAA+AGG | - | chr2_4:33251491-33251510 | None:intergenic | 20.0% |
| !!! | TTGTTTTTCTAAACTATTTG+TGG | + | chr2_4:33251861-33251880 | Msa0325590:intron | 20.0% |
| !! | TATTCAATGAATGTGTTTAA+AGG | + | chr2_4:33252047-33252066 | Msa0325590:intron | 20.0% |
| !! | CTGCAACATAAAATAAATTA+GGG | - | chr2_4:33252104-33252123 | None:intergenic | 20.0% |
| !! | TCTGCAACATAAAATAAATT+AGG | - | chr2_4:33252105-33252124 | None:intergenic | 20.0% |
| !!! | ATTTATTTTATGTTGCAGAA+TGG | + | chr2_4:33252106-33252125 | Msa0325590:intron | 20.0% |
| !! | AGTTGAAGATAAAAATCAAA+TGG | + | chr2_4:33252957-33252976 | Msa0325590:CDS | 20.0% |
| !!! | AGATCAATAGTTTTTTTGAT+GGG | + | chr2_4:33252984-33253003 | Msa0325590:exon | 20.0% |
| !!! | TATGAAAATTTTCCATTAGA+TGG | + | chr2_4:33253204-33253223 | Msa0325590:three_prime_UTR | 20.0% |
| !!! | ATGAAAATTTTCCATTAGAT+GGG | + | chr2_4:33253205-33253224 | Msa0325590:three_prime_UTR | 20.0% |
| ! | GTCCTTAAATTATGCAAATA+AGG | + | chr2_4:33250671-33250690 | Msa0325590:intron | 25.0% |
| !!! | AGCCTTATTTGCATAATTTA+AGG | - | chr2_4:33250676-33250695 | None:intergenic | 25.0% |
| ! | CTCTGTTTGGTAAAAAATAA+TGG | + | chr2_4:33250694-33250713 | Msa0325590:intron | 25.0% |
| ! | AATATCAAGGACTTAATTGT+CGG | - | chr2_4:33251075-33251094 | None:intergenic | 25.0% |
| ! | AATATTAGAGGCTAAATTGA+CGG | + | chr2_4:33251097-33251116 | Msa0325590:intron | 25.0% |
| !!! | GACGGATTTTTATATACTTT+AGG | + | chr2_4:33251115-33251134 | Msa0325590:intron | 25.0% |
| ! | TATGAACTAAATTAGAGAGA+TGG | + | chr2_4:33251191-33251210 | Msa0325590:intron | 25.0% |
| !!! | TGATGAGTTTTTTGTAACTA+AGG | + | chr2_4:33251356-33251375 | Msa0325590:intron | 25.0% |
| ! | TATAAAACCCTGATTATGAT+AGG | + | chr2_4:33251494-33251513 | Msa0325590:intron | 25.0% |
| !! | TCTTTTTCCTATCATAATCA+GGG | - | chr2_4:33251504-33251523 | None:intergenic | 25.0% |
| !! | TTCTTTTTCCTATCATAATC+AGG | - | chr2_4:33251505-33251524 | None:intergenic | 25.0% |
| ! | TATTAAAATCCAAACACTTC+TGG | - | chr2_4:33251606-33251625 | None:intergenic | 25.0% |
| !!! | GTTTGGATTTTAATAGAATC+TGG | + | chr2_4:33251611-33251630 | Msa0325590:intron | 25.0% |
| ! | ACTTTATATTCGTTAAAGAG+TGG | + | chr2_4:33251817-33251836 | Msa0325590:intron | 25.0% |
| !!! | ATTTTAAAAACTAACCATGC+AGG | - | chr2_4:33252481-33252500 | None:intergenic | 25.0% |
| ! | AGTTTCACTATGATATTCAA+AGG | - | chr2_4:33252562-33252581 | None:intergenic | 25.0% |
| ! | AATATCATAGTGAAACTTCA+GGG | + | chr2_4:33252565-33252584 | Msa0325590:intron | 25.0% |
| ! | TTGTTAAAAGAAATCTAAGC+AGG | + | chr2_4:33252620-33252639 | Msa0325590:intron | 25.0% |
| ! | TGTTAAAAGAAATCTAAGCA+GGG | + | chr2_4:33252621-33252640 | Msa0325590:intron | 25.0% |
| ! | CTGAAACTGAAATATTTCAA+GGG | - | chr2_4:33252671-33252690 | None:intergenic | 25.0% |
| !! | TCTGAAACTGAAATATTTCA+AGG | - | chr2_4:33252672-33252691 | None:intergenic | 25.0% |
| !!! | CAGATCAATAGTTTTTTTGA+TGG | + | chr2_4:33252983-33253002 | Msa0325590:exon | 25.0% |
| !! | TGAAAATTTTCCATTAGATG+GGG | + | chr2_4:33253206-33253225 | Msa0325590:three_prime_UTR | 25.0% |
| !! | CTTTTGTTGTAGATTGGATA+AGG | + | chr2_4:33250403-33250422 | Msa0325590:CDS | 30.0% |
| TGAGATTGTTAATGTTCATC+AGG | + | chr2_4:33250481-33250500 | Msa0325590:CDS | 30.0% | |
| ATAAAAACACAAACCTTAGC+AGG | - | chr2_4:33250566-33250585 | None:intergenic | 30.0% | |
| TTAAGATTGCAAGGATACAA+TGG | + | chr2_4:33250848-33250867 | Msa0325590:intron | 30.0% | |
| !! | GTCGGGTTTTATATAAGTAA+AGG | - | chr2_4:33251057-33251076 | None:intergenic | 30.0% |
| ATATCAAGGACTTAATTGTC+GGG | - | chr2_4:33251074-33251093 | None:intergenic | 30.0% | |
| ! | CTTCAAAGTATCAATGATCA+TGG | - | chr2_4:33251400-33251419 | None:intergenic | 30.0% |
| ! | ATTGATACTTTGAAGAGACA+TGG | + | chr2_4:33251405-33251424 | Msa0325590:intron | 30.0% |
| TAACTGATGAAACTCAATTG+CGG | + | chr2_4:33251435-33251454 | Msa0325590:intron | 30.0% | |
| ! | AAAGCCATATTGTTTTCTTG+TGG | + | chr2_4:33251528-33251547 | Msa0325590:intron | 30.0% |
| TTTGCCACAAGAAAACAATA+TGG | - | chr2_4:33251535-33251554 | None:intergenic | 30.0% | |
| ! | ATATTGTTTTCTTGTGGCAA+AGG | + | chr2_4:33251534-33251553 | Msa0325590:intron | 30.0% |
| !! | ATATATCAACCAGAAGTGTT+TGG | + | chr2_4:33251594-33251613 | Msa0325590:intron | 30.0% |
| !! | GAATCTGGAATTTGTTAACT+AGG | + | chr2_4:33251626-33251645 | Msa0325590:intron | 30.0% |
| ACGAATATAAAGTCATGCAA+TGG | - | chr2_4:33251810-33251829 | None:intergenic | 30.0% | |
| AAAGAGTGGAAAAGTTTCAT+TGG | + | chr2_4:33251831-33251850 | Msa0325590:intron | 30.0% | |
| ! | ATATCTGATGCTGGTTAATT+TGG | + | chr2_4:33251888-33251907 | Msa0325590:intron | 30.0% |
| !! | ATATTCAAAGGCACTCATTA+AGG | - | chr2_4:33252550-33252569 | None:intergenic | 30.0% |
| GAATATCATAGTGAAACTTC+AGG | + | chr2_4:33252564-33252583 | Msa0325590:intron | 30.0% | |
| ! | CAGGGATATAATCTTTTGAA+TGG | + | chr2_4:33252639-33252658 | Msa0325590:intron | 30.0% |
| TAACTTCTACTTCAGATAGA+AGG | - | chr2_4:33252697-33252716 | None:intergenic | 30.0% | |
| AGTAGAAGTTAAATATAGCC+TGG | + | chr2_4:33252706-33252725 | Msa0325590:intron | 30.0% | |
| TTATGTAAGAAACAGTGCTT+TGG | + | chr2_4:33252750-33252769 | Msa0325590:intron | 30.0% | |
| TTCCTAAAAACTAACCAGAA+AGG | - | chr2_4:33252802-33252821 | None:intergenic | 30.0% | |
| AGAAGAATAAGTCTAGTAGC+AGG | + | chr2_4:33249830-33249849 | Msa0325590:CDS | 35.0% | |
| TTCATACGAACGTTTCATCT+GGG | + | chr2_4:33249853-33249872 | Msa0325590:CDS | 35.0% | |
| ACGCTTTCTGTTCATAAGAA+AGG | + | chr2_4:33250281-33250300 | Msa0325590:CDS | 35.0% | |
| !! | TGATCTTGCTATTCATCCTT+CGG | + | chr2_4:33250310-33250329 | Msa0325590:CDS | 35.0% |
| !! | GAGAAGCTTTTGTTGTAGAT+TGG | + | chr2_4:33250397-33250416 | Msa0325590:CDS | 35.0% |
| !!! | GTCTGGTGATTCGTTTTTTA+TGG | + | chr2_4:33250451-33250470 | Msa0325590:CDS | 35.0% |
| TATGCAAATAAGGCTCTGTT+TGG | + | chr2_4:33250681-33250700 | Msa0325590:intron | 35.0% | |
| CTGATTGAATTCGTAGTGTT+CGG | + | chr2_4:33250746-33250765 | Msa0325590:intron | 35.0% | |
| GTTATAAGCTCATGAGAAAG+TGG | + | chr2_4:33250937-33250956 | Msa0325590:intron | 35.0% | |
| AGTAAAGGACTACTTCTGTT+TGG | - | chr2_4:33251042-33251061 | None:intergenic | 35.0% | |
| AGAGAGATGGTGAATAGTTT+AGG | + | chr2_4:33251204-33251223 | Msa0325590:intron | 35.0% | |
| GAGAGATGGTGAATAGTTTA+GGG | + | chr2_4:33251205-33251224 | Msa0325590:intron | 35.0% | |
| TAGTTTAGGGACGAAATTGA+TGG | + | chr2_4:33251218-33251237 | Msa0325590:intron | 35.0% | |
| ! | GTGATGTTCAGCTTGATAAT+AGG | + | chr2_4:33251319-33251338 | Msa0325590:intron | 35.0% |
| AACTGATGAAACTCAATTGC+GGG | + | chr2_4:33251436-33251455 | Msa0325590:intron | 35.0% | |
| ! | ATTTGTTAACTAGGCTTTGC+TGG | + | chr2_4:33251635-33251654 | Msa0325590:intron | 35.0% |
| ! | TGTTCTGAATCTTCTGATAC+TGG | - | chr2_4:33251664-33251683 | None:intergenic | 35.0% |
| !! | AACATGGTTTTACTAGTCCT+TGG | + | chr2_4:33251922-33251941 | Msa0325590:intron | 35.0% |
| TTGCACATAATAACCATCTG+CGG | - | chr2_4:33251985-33252004 | None:intergenic | 35.0% | |
| ! | CACAACAATACCTTTTACAC+GGG | - | chr2_4:33252224-33252243 | None:intergenic | 35.0% |
| ! | GCACAACAATACCTTTTACA+CGG | - | chr2_4:33252225-33252244 | None:intergenic | 35.0% |
| AGTTCAAGCAATATGAGCTA+AGG | - | chr2_4:33252448-33252467 | None:intergenic | 35.0% | |
| !!! | AACATTTTGGCTTGTTTACC+AGG | - | chr2_4:33252727-33252746 | None:intergenic | 35.0% |
| !! | TTTGGTTTGTGTAGGAGTTT+AGG | + | chr2_4:33252768-33252787 | Msa0325590:intron | 35.0% |
| !!! | CTCCTTTCTGGTTAGTTTTT+AGG | + | chr2_4:33252797-33252816 | Msa0325590:intron | 35.0% |
| TCTATAGCAGTCTTCATAAG+TGG | + | chr2_4:33252827-33252846 | Msa0325590:intron | 35.0% | |
| TGCATTATTCTTTCCAGCTT+GGG | - | chr2_4:33252935-33252954 | None:intergenic | 35.0% | |
| TAAGGTGCACAGATTTATGA+GGG | - | chr2_4:33253055-33253074 | None:intergenic | 35.0% | |
| ATAAGGTGCACAGATTTATG+AGG | - | chr2_4:33253056-33253075 | None:intergenic | 35.0% | |
| CACATAGAATTGCTAGCATA+AGG | - | chr2_4:33253073-33253092 | None:intergenic | 35.0% | |
| ATGCTAGCAATTCTATGTGA+TGG | + | chr2_4:33253074-33253093 | Msa0325590:three_prime_UTR | 35.0% | |
| GTTCATACGAACGTTTCATC+TGG | + | chr2_4:33249852-33249871 | Msa0325590:CDS | 40.0% | |
| TCATACGAACGTTTCATCTG+GGG | + | chr2_4:33249854-33249873 | Msa0325590:CDS | 40.0% | |
| TGATTAGGGAGAGATGAGAT+GGG | - | chr2_4:33249928-33249947 | None:intergenic | 40.0% | |
| TTGATTAGGGAGAGATGAGA+TGG | - | chr2_4:33249929-33249948 | None:intergenic | 40.0% | |
| !! | GATCTTGCTATTCATCCTTC+GGG | + | chr2_4:33250311-33250330 | Msa0325590:CDS | 40.0% |
| !! | ATCTTGCTATTCATCCTTCG+GGG | + | chr2_4:33250312-33250331 | Msa0325590:CDS | 40.0% |
| CATAGCAAAACAACAATCCC+TGG | - | chr2_4:33250357-33250376 | None:intergenic | 40.0% | |
| !!! | CAGGGATTGTTGTTTTGCTA+TGG | + | chr2_4:33250355-33250374 | Msa0325590:CDS | 40.0% |
| CTATGGTGAATCTTGTTCGT+GGG | + | chr2_4:33250372-33250391 | Msa0325590:CDS | 40.0% | |
| ATTGTGAGGTTTGATGAGTC+TGG | + | chr2_4:33250434-33250453 | Msa0325590:CDS | 40.0% | |
| TGTTAATGTTCATCAGGCTG+AGG | + | chr2_4:33250487-33250506 | Msa0325590:CDS | 40.0% | |
| AGGACTACTTCTGTTTGGTA+AGG | - | chr2_4:33251037-33251056 | None:intergenic | 40.0% | |
| AACTTTCATGGTCCACATTG+TGG | + | chr2_4:33251459-33251478 | Msa0325590:intron | 40.0% | |
| AAAAGGTTCACACCACAATG+TGG | - | chr2_4:33251474-33251493 | None:intergenic | 40.0% | |
| TGTGGTGAAATATCTGATGC+TGG | + | chr2_4:33251879-33251898 | Msa0325590:intron | 40.0% | |
| ! | TGCTGGTTAATTTGGCTGAT+AGG | + | chr2_4:33251896-33251915 | Msa0325590:intron | 40.0% |
| TTTGGCTGATAGGCATAACA+TGG | + | chr2_4:33251906-33251925 | Msa0325590:intron | 40.0% | |
| TAGTCCTTGGCAAGTTTCAT+TGG | + | chr2_4:33251935-33251954 | Msa0325590:intron | 40.0% | |
| TTCACCAATGAAACTTGCCA+AGG | - | chr2_4:33251942-33251961 | None:intergenic | 40.0% | |
| AGGATCGAAATATCACAGCA+TGG | + | chr2_4:33252149-33252168 | Msa0325590:CDS | 40.0% | |
| GGATCGAAATATCACAGCAT+GGG | + | chr2_4:33252150-33252169 | Msa0325590:CDS | 40.0% | |
| AGCTGCATATTGCATAGAAG+AGG | + | chr2_4:33252189-33252208 | Msa0325590:CDS | 40.0% | |
| TATTGTTGTGCTCAGTGATG+AGG | + | chr2_4:33252234-33252253 | Msa0325590:CDS | 40.0% | |
| TAGCATCTGCATCATCTGAT+GGG | + | chr2_4:33252284-33252303 | Msa0325590:CDS | 40.0% | |
| ! | TGATGGGAGTATACGTGTAT+GGG | + | chr2_4:33252300-33252319 | Msa0325590:CDS | 40.0% |
| !!! | TAGTGGTTTTGACTTCTCTG+TGG | - | chr2_4:33252341-33252360 | None:intergenic | 40.0% |
| ACTAACCATGCAGGCAAAAA+AGG | - | chr2_4:33252472-33252491 | None:intergenic | 40.0% | |
| CAACAGCAAACTCATGAACA+TGG | - | chr2_4:33252520-33252539 | None:intergenic | 40.0% | |
| ATCATAGTGAAACTTCAGGG+CGG | + | chr2_4:33252568-33252587 | Msa0325590:intron | 40.0% | |
| !! | AACAGTGCTTTGGTTTGTGT+AGG | + | chr2_4:33252760-33252779 | Msa0325590:intron | 40.0% |
| TTTAGGAACACTCTCCTTTC+TGG | + | chr2_4:33252785-33252804 | Msa0325590:intron | 40.0% | |
| TGTGCTTGTAGTATGCATGT+TGG | + | chr2_4:33252853-33252872 | Msa0325590:intron | 40.0% | |
| GCATTATTCTTTCCAGCTTG+GGG | - | chr2_4:33252934-33252953 | None:intergenic | 40.0% | |
| CTGCATTATTCTTTCCAGCT+TGG | - | chr2_4:33252936-33252955 | None:intergenic | 40.0% | |
| !!! | CGTTTTGCTGTTCGATTAAG+TGG | + | chr2_4:33253021-33253040 | Msa0325590:three_prime_UTR | 40.0% |
| GGGTTAGGGTTTGGGAATTA+GGG | - | chr2_4:33249892-33249911 | None:intergenic | 45.0% | |
| GAAAAGAGGGGTTAGGGTTT+GGG | - | chr2_4:33249900-33249919 | None:intergenic | 45.0% | |
| AGAAAAGAGGGGTTAGGGTT+TGG | - | chr2_4:33249901-33249920 | None:intergenic | 45.0% | |
| GTAGGAGAAAAGAGGGGTTA+GGG | - | chr2_4:33249906-33249925 | None:intergenic | 45.0% | |
| AGATGGGTAGGAGAAAAGAG+GGG | - | chr2_4:33249912-33249931 | None:intergenic | 45.0% | |
| GAGATGGGTAGGAGAAAAGA+GGG | - | chr2_4:33249913-33249932 | None:intergenic | 45.0% | |
| TGAGATGGGTAGGAGAAAAG+AGG | - | chr2_4:33249914-33249933 | None:intergenic | 45.0% | |
| !!! | AACGGCGACGGTTTTGATTA+GGG | - | chr2_4:33249942-33249961 | None:intergenic | 45.0% |
| !!! | AAACGGCGACGGTTTTGATT+AGG | - | chr2_4:33249943-33249962 | None:intergenic | 45.0% |
| !! | GTAGAGATGGATTGTGTCGT+CGG | - | chr2_4:33249993-33250012 | None:intergenic | 45.0% |
| TTACGAGGAAAAGGGAGGTT+AGG | - | chr2_4:33250094-33250113 | None:intergenic | 45.0% | |
| AGACGAGGTTACGAGGAAAA+GGG | - | chr2_4:33250102-33250121 | None:intergenic | 45.0% | |
| ! | NNCGGCATCGAAAATCGCAA+GGG | - | chr2_4:33250143-33250162 | None:intergenic | 45.0% |
| ! | NNNCGGCATCGAAAATCGCA+AGG | - | chr2_4:33250144-33250163 | None:intergenic | 45.0% |
| !! | AGATTGCGTTGACTGTTTCC+AGG | + | chr2_4:33250336-33250355 | Msa0325590:CDS | 45.0% |
| !! | GATTGCGTTGACTGTTTCCA+GGG | + | chr2_4:33250337-33250356 | Msa0325590:CDS | 45.0% |
| GCTATGGTGAATCTTGTTCG+TGG | + | chr2_4:33250371-33250390 | Msa0325590:CDS | 45.0% | |
| !! | ATAAGGAAGCGTCGATTGTG+AGG | + | chr2_4:33250420-33250439 | Msa0325590:CDS | 45.0% |
| TGAGGATGCTAGGTTGTTGA+TGG | + | chr2_4:33250505-33250524 | Msa0325590:CDS | 45.0% | |
| AACACAAACCTTAGCAGGTG+CGG | - | chr2_4:33250561-33250580 | None:intergenic | 45.0% | |
| CTCAATTGCGGGAACTTTCA+TGG | + | chr2_4:33251447-33251466 | Msa0325590:intron | 45.0% | |
| CAACATTGTCCCTCTCATTG+CGG | - | chr2_4:33251773-33251792 | None:intergenic | 45.0% | |
| ! | CAGAATGGACTCCTCTATAC+AGG | + | chr2_4:33252121-33252140 | Msa0325590:intron | 45.0% |
| ! | AATGGACTCCTCTATACAGG+CGG | + | chr2_4:33252124-33252143 | Msa0325590:CDS | 45.0% |
| ACAGCATGGGACTTAAAGAG+TGG | + | chr2_4:33252163-33252182 | Msa0325590:CDS | 45.0% | |
| GATGCAGATGCTACTAGGTA+TGG | - | chr2_4:33252277-33252296 | None:intergenic | 45.0% | |
| CAGATGATGCAGATGCTACT+AGG | - | chr2_4:33252282-33252301 | None:intergenic | 45.0% | |
| GTAGCATCTGCATCATCTGA+TGG | + | chr2_4:33252283-33252302 | Msa0325590:CDS | 45.0% | |
| ! | CTGATGGGAGTATACGTGTA+TGG | + | chr2_4:33252299-33252318 | Msa0325590:CDS | 45.0% |
| ACGTGTATGGGATGTTCGAA+TGG | + | chr2_4:33252312-33252331 | Msa0325590:CDS | 45.0% | |
| !!! | TGGTTTTGACTTCTCTGTGG+CGG | - | chr2_4:33252338-33252357 | None:intergenic | 45.0% |
| TGTGTCTTACACTCAGCTAG+TGG | - | chr2_4:33252358-33252377 | None:intergenic | 45.0% | |
| CTGAGTGTAAGACACAGTCA+AGG | + | chr2_4:33252362-33252381 | Msa0325590:CDS | 45.0% | |
| ATTTCAGACACGATCCAGCA+AGG | - | chr2_4:33252396-33252415 | None:intergenic | 45.0% | |
| !!! | AACTGCCTTTTTTGCCTGCA+TGG | + | chr2_4:33252464-33252483 | Msa0325590:intron | 45.0% |
| !! | ATCAAATAAAATATTATAAA+GGG | - | chr2_4:33251745-33251764 | None:intergenic | 5.0% |
| !! | AATCAAATAAAATATTATAA+AGG | - | chr2_4:33251746-33251765 | None:intergenic | 5.0% |
| GGGGTTAGGGTTTGGGAATT+AGG | - | chr2_4:33249893-33249912 | None:intergenic | 50.0% | |
| GGTAGGAGAAAAGAGGGGTT+AGG | - | chr2_4:33249907-33249926 | None:intergenic | 50.0% | |
| TAGGGAGAGATGAGATGGGT+AGG | - | chr2_4:33249924-33249943 | None:intergenic | 50.0% | |
| TGCTACGACGGAGTTGGAAA+CGG | - | chr2_4:33249960-33249979 | None:intergenic | 50.0% | |
| AGGTGGGGAGTAAAAGGAGA+GGG | - | chr2_4:33250074-33250093 | None:intergenic | 50.0% | |
| TAGGTGGGGAGTAAAAGGAG+AGG | - | chr2_4:33250075-33250094 | None:intergenic | 50.0% | |
| GAGGTTAGGTGGGGAGTAAA+AGG | - | chr2_4:33250080-33250099 | None:intergenic | 50.0% | |
| AGGAAAAGGGAGGTTAGGTG+GGG | - | chr2_4:33250089-33250108 | None:intergenic | 50.0% | |
| GAGGAAAAGGGAGGTTAGGT+GGG | - | chr2_4:33250090-33250109 | None:intergenic | 50.0% | |
| GAGACGAGGTTACGAGGAAA+AGG | - | chr2_4:33250103-33250122 | None:intergenic | 50.0% | |
| TGGTGAATCTTGTTCGTGGG+AGG | + | chr2_4:33250375-33250394 | Msa0325590:CDS | 50.0% | |
| TTCATCAGGCTGAGGATGCT+AGG | + | chr2_4:33250495-33250514 | Msa0325590:CDS | 50.0% | |
| TTGATTGCCACCGCAATGAG+AGG | + | chr2_4:33251760-33251779 | Msa0325590:intron | 50.0% | |
| TGATTGCCACCGCAATGAGA+GGG | + | chr2_4:33251761-33251780 | Msa0325590:intron | 50.0% | |
| AATAACCATCTGCGGCTGTG+CGG | - | chr2_4:33251977-33251996 | None:intergenic | 50.0% | |
| TCAAGGTTGACATGCCTTGC+TGG | + | chr2_4:33252379-33252398 | Msa0325590:CDS | 50.0% | |
| CTTTCCAGCTTGGGGTTGTT+TGG | - | chr2_4:33252926-33252945 | None:intergenic | 50.0% | |
| TCCAACTCCGTCGTAGCATC+CGG | + | chr2_4:33249962-33249981 | Msa0325590:CDS | 55.0% | |
| AGGCGGAGAGGTTGTAGAGA+TGG | - | chr2_4:33250006-33250025 | None:intergenic | 55.0% | |
| GTAAAAGGAGAGGGCGGTGA+CGG | - | chr2_4:33250065-33250084 | None:intergenic | 55.0% | |
| TGGGGAGTAAAAGGAGAGGG+CGG | - | chr2_4:33250071-33250090 | None:intergenic | 55.0% | |
| CGAGGAAAAGGGAGGTTAGG+TGG | - | chr2_4:33250091-33250110 | None:intergenic | 55.0% | |
| CGAGGTTACGAGGAAAAGGG+AGG | - | chr2_4:33250099-33250118 | None:intergenic | 55.0% | |
| GTCAACGCAATCTTCCCCGA+AGG | - | chr2_4:33250329-33250348 | None:intergenic | 55.0% | |
| GCGGCGCAAAGAACACGTTT+CGG | - | chr2_4:33250542-33250561 | None:intergenic | 55.0% | |
| CATTGTCCCTCTCATTGCGG+TGG | - | chr2_4:33251770-33251789 | None:intergenic | 55.0% | |
| ACTCCTCTATACAGGCGGTG+AGG | + | chr2_4:33252129-33252148 | Msa0325590:CDS | 55.0% | |
| GATCCTCACCGCCTGTATAG+AGG | - | chr2_4:33252135-33252154 | None:intergenic | 55.0% | |
| GCTCATGCTGCCCGTGTAAA+AGG | + | chr2_4:33252211-33252230 | Msa0325590:CDS | 55.0% | |
| GTGCTCAGTGATGAGGCTAC+AGG | + | chr2_4:33252241-33252260 | Msa0325590:CDS | 55.0% | |
| GGGGTTGTTTGGCTGCACAA+CGG | - | chr2_4:33252915-33252934 | None:intergenic | 55.0% | |
| GACGGAGTTGGAAACGGCGA+CGG | - | chr2_4:33249954-33249973 | None:intergenic | 60.0% | |
| AACTCCGTCGTAGCATCCGG+CGG | + | chr2_4:33249965-33249984 | Msa0325590:CDS | 60.0% | |
| GTGGTGGTTGAGGGAACCGA+GGG | - | chr2_4:33250035-33250054 | None:intergenic | 60.0% | |
| AGTGGTGGTTGAGGGAACCG+AGG | - | chr2_4:33250036-33250055 | None:intergenic | 60.0% | |
| GGTGGAGGAGTGGTGGTTGA+GGG | - | chr2_4:33250044-33250063 | None:intergenic | 60.0% | |
| TCAGCGGAGACGAGGTTACG+AGG | - | chr2_4:33250109-33250128 | None:intergenic | 60.0% | |
| TCTTTGCGCCGCACCTGCTA+AGG | + | chr2_4:33250550-33250569 | Msa0325590:CDS | 60.0% | |
| ATATGCCGCACAGCCGCAGA+TGG | + | chr2_4:33251969-33251988 | Msa0325590:intron | 60.0% | |
| GCAGCCAAACAACCCCAAGC+TGG | + | chr2_4:33252919-33252938 | Msa0325590:intron | 60.0% | |
| GCCGGATGCTACGACGGAGT+TGG | - | chr2_4:33249966-33249985 | None:intergenic | 65.0% | |
| GATTGTGTCGTCGGAGCCGC+CGG | - | chr2_4:33249984-33250003 | None:intergenic | 65.0% | |
| GTTGAGGGAACCGAGGGAGG+AGG | - | chr2_4:33250029-33250048 | None:intergenic | 65.0% | |
| GTGGTTGAGGGAACCGAGGG+AGG | - | chr2_4:33250032-33250051 | None:intergenic | 65.0% | |
| CGGTGGAGGAGTGGTGGTTG+AGG | - | chr2_4:33250045-33250064 | None:intergenic | 65.0% | |
| ! | AAAGGAGAGGGCGGTGACGG+TGG | - | chr2_4:33250062-33250081 | None:intergenic | 65.0% |
| CTCGTCTCCGCTGACGCTGA+CGG | + | chr2_4:33250115-33250134 | Msa0325590:CDS | 65.0% | |
| AAGGGAGCCGTCAGCGTCAG+CGG | - | chr2_4:33250125-33250144 | None:intergenic | 65.0% | |
| GGAGCCGCCGGATGCTACGA+CGG | - | chr2_4:33249972-33249991 | None:intergenic | 70.0% | |
| CTCTCCGCCTCCTCCTCCCT+CGG | + | chr2_4:33250016-33250035 | Msa0325590:CDS | 70.0% | |
| GGAACCGAGGGAGGAGGAGG+CGG | - | chr2_4:33250023-33250042 | None:intergenic | 70.0% | |
| GAGGGAACCGAGGGAGGAGG+AGG | - | chr2_4:33250026-33250045 | None:intergenic | 70.0% | |
| ! | CGGTGACGGTGGAGGAGTGG+TGG | - | chr2_4:33250051-33250070 | None:intergenic | 70.0% |
| CGTCAGCGTCAGCGGAGACG+AGG | - | chr2_4:33250117-33250136 | None:intergenic | 70.0% | |
| CGAGGGAGGAGGAGGCGGAG+AGG | - | chr2_4:33250018-33250037 | None:intergenic | 75.0% | |
| ! | GGGCGGTGACGGTGGAGGAG+TGG | - | chr2_4:33250054-33250073 | None:intergenic | 75.0% |
| ! | GGAGAGGGCGGTGACGGTGG+AGG | - | chr2_4:33250059-33250078 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 33249818 | 33253229 | 33249818 | ID=Msa0325590;Name=Msa0325590 |
| chr2_4 | mRNA | 33249818 | 33253229 | 33249818 | ID=Msa0325590-mRNA-1;Parent=Msa0325590;Name=Msa0325590-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0.66|0.5|1|1|1|4|236|326 |
| chr2_4 | exon | 33249818 | 33250144 | 33249818 | ID=Msa0325590-mRNA-1:exon:10739;Parent=Msa0325590-mRNA-1 |
| chr2_4 | exon | 33250281 | 33250571 | 33250281 | ID=Msa0325590-mRNA-1:exon:10740;Parent=Msa0325590-mRNA-1 |
| chr2_4 | exon | 33252124 | 33252415 | 33252124 | ID=Msa0325590-mRNA-1:exon:10741;Parent=Msa0325590-mRNA-1 |
| chr2_4 | exon | 33252923 | 33253229 | 33252923 | ID=Msa0325590-mRNA-1:exon:10742;Parent=Msa0325590-mRNA-1 |
| chr2_4 | CDS | 33249818 | 33250144 | 33249818 | ID=Msa0325590-mRNA-1:cds;Parent=Msa0325590-mRNA-1 |
| chr2_4 | CDS | 33250281 | 33250571 | 33250281 | ID=Msa0325590-mRNA-1:cds;Parent=Msa0325590-mRNA-1 |
| chr2_4 | CDS | 33252124 | 33252415 | 33252124 | ID=Msa0325590-mRNA-1:cds;Parent=Msa0325590-mRNA-1 |
| chr2_4 | CDS | 33252923 | 33252993 | 33252923 | ID=Msa0325590-mRNA-1:cds;Parent=Msa0325590-mRNA-1 |
| chr2_4 | three_prime_UTR | 33252994 | 33253229 | 33252994 | ID=Msa0325590-mRNA-1:three_prime_utr;Parent=Msa0325590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
