Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0439360 | XP_013452038.1 | 93.204 | 103 | 7 | 0 | 24 | 126 | 147 | 249 | 1.42e-61 | 202 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0439360 | sp|Q96520|PER12_ARATH | 42.157 | 102 | 56 | 2 | 22 | 120 | 153 | 254 | 2.99e-19 | 84.7 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0439360 | A0A072U9H8 | 93.204 | 103 | 7 | 0 | 24 | 126 | 147 | 249 | 6.78e-62 | 202 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0022900 | Msa0439360 | 0.813342 | 2.687255e-51 | -8.615850e-47 |
Msa0024280 | Msa0439360 | 0.811949 | 5.420221e-51 | -8.615850e-47 |
Msa0118660 | Msa0439360 | 0.816874 | 4.415186e-52 | -8.615850e-47 |
Msa0120050 | Msa0439360 | 0.815349 | 9.676097e-52 | -8.615850e-47 |
Msa0163340 | Msa0439360 | 0.834646 | 2.657640e-56 | -8.615850e-47 |
Msa0439000 | Msa0439360 | 0.940966 | 9.422860e-101 | -8.615850e-47 |
Msa0439030 | Msa0439360 | 0.830380 | 3.033569e-55 | -8.615850e-47 |
Msa0439360 | Msa0439370 | 0.862893 | 3.669141e-64 | -8.615850e-47 |
Msa0439360 | Msa0450620 | 0.840776 | 7.093671e-58 | -8.615850e-47 |
Msa0439360 | Msa0481570 | 0.888460 | 5.792287e-73 | -8.615850e-47 |
Msa0439360 | Msa0482790 | 0.867317 | 1.496373e-65 | -8.615850e-47 |
Msa0439360 | Msa0483080 | 0.808907 | 2.458399e-50 | -8.615850e-47 |
Msa0439360 | Msa0543740 | 0.803628 | 3.183341e-49 | -8.615850e-47 |
Msa0439360 | Msa0678620 | 0.806693 | 7.265529e-50 | -8.615850e-47 |
Msa0439360 | Msa0777250 | 0.824468 | 7.941601e-54 | -8.615850e-47 |
Msa0439360 | Msa0814230 | 0.810328 | 1.217320e-50 | -8.615850e-47 |
Msa0439360 | Msa0913550 | 0.831684 | 1.452123e-55 | -8.615850e-47 |
Msa0439360 | Msa0951150 | 0.875852 | 2.221958e-68 | -8.615850e-47 |
Msa0439360 | Msa0987640 | 0.869771 | 2.411685e-66 | -8.615850e-47 |
Msa0439360 | Msa1021620 | 0.815164 | 1.063410e-51 | -8.615850e-47 |
Msa0439360 | Msa1149020 | 0.803835 | 2.883353e-49 | -8.615850e-47 |
Msa0439360 | Msa1269050 | 0.822630 | 2.137708e-53 | -8.615850e-47 |
Msa0439360 | Msa1323120 | 0.818536 | 1.861939e-52 | -8.615850e-47 |
Msa0439360 | Msa1365450 | 0.893057 | 8.951726e-75 | -8.615850e-47 |
Msa0439360 | Msa1445900 | 0.810396 | 1.177144e-50 | -8.615850e-47 |
Msa0439360 | Msa1459610 | 0.806951 | 6.410834e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0439360 | MtrunA17_Chr6g0467251 | 93.204 | 103 | 7 | 0 | 24 | 126 | 147 | 249 | 1.31e-65 | 202 |
Msa0439360 | MtrunA17_Chr6g0467121 | 55.446 | 101 | 45 | 0 | 26 | 126 | 184 | 284 | 6.03e-34 | 121 |
Msa0439360 | MtrunA17_Chr6g0467161 | 48.624 | 109 | 54 | 1 | 20 | 126 | 149 | 257 | 3.40e-31 | 113 |
Msa0439360 | MtrunA17_Chr2g0292241 | 43.269 | 104 | 52 | 2 | 19 | 115 | 134 | 237 | 9.14e-23 | 90.9 |
Msa0439360 | MtrunA17_Chr2g0292211 | 42.308 | 104 | 53 | 2 | 19 | 115 | 145 | 248 | 8.60e-22 | 88.6 |
Msa0439360 | MtrunA17_Chr2g0292181 | 38.462 | 104 | 57 | 2 | 19 | 115 | 143 | 246 | 3.18e-19 | 81.6 |
Msa0439360 | MtrunA17_Chr2g0292251 | 39.216 | 102 | 55 | 2 | 21 | 115 | 135 | 236 | 3.63e-19 | 81.3 |
Msa0439360 | MtrunA17_Chr2g0291751 | 39.130 | 115 | 62 | 3 | 19 | 125 | 134 | 248 | 5.06e-19 | 80.9 |
Msa0439360 | MtrunA17_Chr1g0188431 | 42.045 | 88 | 51 | 0 | 26 | 113 | 150 | 237 | 1.32e-18 | 79.3 |
Msa0439360 | MtrunA17_Chr2g0292151 | 38.261 | 115 | 63 | 3 | 19 | 125 | 134 | 248 | 1.33e-18 | 79.7 |
Msa0439360 | MtrunA17_Chr2g0292101 | 37.931 | 116 | 64 | 3 | 19 | 126 | 130 | 245 | 1.63e-18 | 79.3 |
Msa0439360 | MtrunA17_Chr2g0292111 | 37.391 | 115 | 64 | 3 | 19 | 125 | 134 | 248 | 1.55e-17 | 76.6 |
Msa0439360 | MtrunA17_Chr4g0013201 | 43.137 | 102 | 55 | 3 | 26 | 125 | 158 | 258 | 1.57e-17 | 76.6 |
Msa0439360 | MtrunA17_Chr7g0225221 | 41.053 | 95 | 53 | 2 | 23 | 114 | 134 | 228 | 1.68e-17 | 76.3 |
Msa0439360 | MtrunA17_Chr4g0013191 | 42.857 | 98 | 54 | 2 | 22 | 118 | 154 | 250 | 4.81e-17 | 75.5 |
Msa0439360 | MtrunA17_Chr2g0292091 | 37.719 | 114 | 63 | 3 | 21 | 126 | 131 | 244 | 5.20e-17 | 75.1 |
Msa0439360 | MtrunA17_Chr3g0114461 | 41.489 | 94 | 53 | 2 | 22 | 114 | 7 | 99 | 1.36e-16 | 72.0 |
Msa0439360 | MtrunA17_Chr2g0292281 | 35.577 | 104 | 60 | 2 | 19 | 115 | 30 | 133 | 1.46e-16 | 72.8 |
Msa0439360 | MtrunA17_Chr2g0292291 | 40.171 | 117 | 61 | 3 | 19 | 126 | 135 | 251 | 1.50e-16 | 73.9 |
Msa0439360 | MtrunA17_Chr2g0292261 | 37.500 | 104 | 58 | 2 | 19 | 115 | 134 | 237 | 3.13e-16 | 73.2 |
Msa0439360 | MtrunA17_Chr5g0404721 | 37.000 | 100 | 56 | 2 | 22 | 114 | 138 | 237 | 6.41e-16 | 72.0 |
Msa0439360 | MtrunA17_Chr5g0402581 | 37.143 | 105 | 58 | 2 | 20 | 116 | 131 | 235 | 9.97e-16 | 71.6 |
Msa0439360 | MtrunA17_Chr5g0402571 | 37.143 | 105 | 58 | 2 | 20 | 116 | 131 | 235 | 1.21e-15 | 71.2 |
Msa0439360 | MtrunA17_Chr8g0364291 | 35.185 | 108 | 60 | 3 | 26 | 123 | 136 | 243 | 1.24e-15 | 71.2 |
Msa0439360 | MtrunA17_Chr5g0438021 | 36.893 | 103 | 63 | 2 | 23 | 124 | 140 | 241 | 2.79e-15 | 70.5 |
Msa0439360 | MtrunA17_Chr1g0164891 | 36.170 | 94 | 53 | 2 | 28 | 114 | 206 | 299 | 3.30e-15 | 70.5 |
Msa0439360 | MtrunA17_Chr1g0213061 | 39.560 | 91 | 54 | 1 | 26 | 116 | 139 | 228 | 3.50e-15 | 70.1 |
Msa0439360 | MtrunA17_Chr7g0224371 | 37.234 | 94 | 57 | 2 | 22 | 114 | 139 | 231 | 4.73e-15 | 69.7 |
Msa0439360 | MtrunA17_Chr4g0046131 | 38.144 | 97 | 53 | 2 | 26 | 115 | 157 | 253 | 5.64e-15 | 69.7 |
Msa0439360 | MtrunA17_Chr3g0114451 | 41.111 | 90 | 51 | 2 | 26 | 114 | 138 | 226 | 5.91e-15 | 69.3 |
Msa0439360 | MtrunA17_Chr1g0155611 | 35.780 | 109 | 63 | 2 | 22 | 123 | 154 | 262 | 6.77e-15 | 69.3 |
Msa0439360 | MtrunA17_Chr2g0320071 | 38.710 | 93 | 55 | 2 | 23 | 114 | 134 | 225 | 6.96e-15 | 69.3 |
Msa0439360 | MtrunA17_Chr7g0244461 | 40.426 | 94 | 54 | 2 | 22 | 114 | 128 | 220 | 8.17e-15 | 68.9 |
Msa0439360 | MtrunA17_Chr4g0013171 | 40.206 | 97 | 55 | 2 | 22 | 116 | 136 | 231 | 2.21e-14 | 67.8 |
Msa0439360 | MtrunA17_Chr6g0477071 | 37.500 | 88 | 55 | 0 | 26 | 113 | 165 | 252 | 2.74e-14 | 67.8 |
Msa0439360 | MtrunA17_Chr7g0254231 | 36.842 | 95 | 59 | 1 | 22 | 116 | 129 | 222 | 3.13e-14 | 67.4 |
Msa0439360 | MtrunA17_Chr1g0157051 | 36.170 | 94 | 54 | 1 | 26 | 113 | 135 | 228 | 3.15e-14 | 67.4 |
Msa0439360 | MtrunA17_Chr4g0053871 | 38.835 | 103 | 60 | 3 | 26 | 125 | 142 | 244 | 4.23e-14 | 67.0 |
Msa0439360 | MtrunA17_Chr8g0371381 | 34.951 | 103 | 59 | 2 | 20 | 114 | 129 | 231 | 4.35e-14 | 67.0 |
Msa0439360 | MtrunA17_Chr3g0106901 | 36.893 | 103 | 62 | 3 | 26 | 126 | 143 | 244 | 4.76e-14 | 67.0 |
Msa0439360 | MtrunA17_Chr3g0129061 | 34.951 | 103 | 65 | 2 | 23 | 124 | 137 | 238 | 4.93e-14 | 67.0 |
Msa0439360 | MtrunA17_Chr4g0024121 | 37.755 | 98 | 53 | 3 | 26 | 115 | 138 | 235 | 5.18e-14 | 67.0 |
Msa0439360 | MtrunA17_Chr4g0013721 | 37.037 | 108 | 60 | 3 | 26 | 125 | 212 | 319 | 5.85e-14 | 67.0 |
Msa0439360 | MtrunA17_Chr5g0405991 | 34.737 | 95 | 56 | 1 | 26 | 114 | 134 | 228 | 9.06e-14 | 66.2 |
Msa0439360 | MtrunA17_Chr4g0075241 | 37.234 | 94 | 54 | 2 | 26 | 114 | 141 | 234 | 9.36e-14 | 66.2 |
Msa0439360 | MtrunA17_Chr4g0013821 | 35.780 | 109 | 62 | 3 | 26 | 126 | 140 | 248 | 1.11e-13 | 65.9 |
Msa0439360 | MtrunA17_Chr8g0372601 | 33.000 | 100 | 60 | 2 | 22 | 114 | 138 | 237 | 1.41e-13 | 65.5 |
Msa0439360 | MtrunA17_Chr4g0068621 | 33.019 | 106 | 66 | 2 | 22 | 122 | 146 | 251 | 1.92e-13 | 65.5 |
Msa0439360 | MtrunA17_Chr1g0175561 | 37.273 | 110 | 57 | 4 | 26 | 125 | 137 | 244 | 2.34e-13 | 65.1 |
Msa0439360 | MtrunA17_Chr2g0320101 | 37.634 | 93 | 56 | 2 | 23 | 114 | 134 | 225 | 3.23e-13 | 64.7 |
Msa0439360 | MtrunA17_Chr3g0106921 | 35.455 | 110 | 65 | 3 | 22 | 126 | 133 | 241 | 3.76e-13 | 64.3 |
Msa0439360 | MtrunA17_Chr2g0279041 | 33.036 | 112 | 68 | 2 | 22 | 126 | 131 | 242 | 4.28e-13 | 64.3 |
Msa0439360 | MtrunA17_Chr2g0292271 | 36.082 | 97 | 55 | 2 | 26 | 115 | 141 | 237 | 4.38e-13 | 64.3 |
Msa0439360 | MtrunA17_Chr5g0432441 | 37.234 | 94 | 56 | 2 | 26 | 117 | 142 | 234 | 4.43e-13 | 64.3 |
Msa0439360 | MtrunA17_Chr7g0268501 | 32.710 | 107 | 64 | 3 | 27 | 125 | 135 | 241 | 5.59e-13 | 63.9 |
Msa0439360 | MtrunA17_Chr7g0268521 | 32.710 | 107 | 64 | 3 | 27 | 125 | 135 | 241 | 5.59e-13 | 63.9 |
Msa0439360 | MtrunA17_Chr2g0322861 | 33.945 | 109 | 63 | 4 | 26 | 125 | 197 | 305 | 1.05e-12 | 63.2 |
Msa0439360 | MtrunA17_Chr1g0148021 | 34.694 | 98 | 57 | 2 | 26 | 116 | 141 | 238 | 1.55e-12 | 62.8 |
Msa0439360 | MtrunA17_Chr4g0013181 | 38.144 | 97 | 57 | 2 | 22 | 116 | 168 | 263 | 1.70e-12 | 62.8 |
Msa0439360 | MtrunA17_Chr3g0129041 | 35.484 | 93 | 58 | 2 | 23 | 114 | 137 | 228 | 1.98e-12 | 62.4 |
Msa0439360 | MtrunA17_Chr2g0320051 | 37.634 | 93 | 56 | 2 | 23 | 114 | 134 | 225 | 2.14e-12 | 62.4 |
Msa0439360 | MtrunA17_Chr5g0432351 | 41.379 | 87 | 49 | 2 | 29 | 114 | 143 | 228 | 3.56e-12 | 61.6 |
Msa0439360 | MtrunA17_Chr2g0320061 | 36.559 | 93 | 57 | 2 | 23 | 114 | 134 | 225 | 3.72e-12 | 61.6 |
Msa0439360 | MtrunA17_Chr3g0107881 | 40.000 | 95 | 53 | 3 | 23 | 114 | 137 | 230 | 4.58e-12 | 61.2 |
Msa0439360 | MtrunA17_Chr4g0038161 | 35.849 | 106 | 61 | 2 | 26 | 124 | 136 | 241 | 5.78e-12 | 61.2 |
Msa0439360 | MtrunA17_Chr3g0129051 | 34.951 | 103 | 65 | 2 | 23 | 124 | 137 | 238 | 6.05e-12 | 60.8 |
Msa0439360 | MtrunA17_Chr5g0432341 | 41.379 | 87 | 49 | 2 | 29 | 114 | 143 | 228 | 6.26e-12 | 60.8 |
Msa0439360 | MtrunA17_Chr1g0194151 | 33.333 | 102 | 59 | 3 | 28 | 120 | 146 | 247 | 7.54e-12 | 60.8 |
Msa0439360 | MtrunA17_Chr4g0038151 | 34.906 | 106 | 62 | 2 | 26 | 124 | 137 | 242 | 8.61e-12 | 60.5 |
Msa0439360 | MtrunA17_Chr1g0197411 | 36.082 | 97 | 55 | 2 | 26 | 115 | 142 | 238 | 9.02e-12 | 60.5 |
Msa0439360 | MtrunA17_Chr3g0128061 | 31.250 | 96 | 59 | 2 | 26 | 114 | 138 | 233 | 1.03e-11 | 60.5 |
Msa0439360 | MtrunA17_Chr2g0320091 | 34.043 | 94 | 60 | 2 | 22 | 114 | 133 | 225 | 1.12e-11 | 60.1 |
Msa0439360 | MtrunA17_Chr2g0278671 | 34.615 | 104 | 63 | 1 | 22 | 120 | 129 | 232 | 1.45e-11 | 60.1 |
Msa0439360 | MtrunA17_Chr2g0329641 | 35.106 | 94 | 54 | 2 | 27 | 114 | 146 | 238 | 1.62e-11 | 59.7 |
Msa0439360 | MtrunA17_Chr4g0063671 | 36.111 | 108 | 62 | 2 | 25 | 125 | 128 | 235 | 2.04e-11 | 59.7 |
Msa0439360 | MtrunA17_Chr5g0401431 | 34.259 | 108 | 63 | 3 | 26 | 125 | 142 | 249 | 3.22e-11 | 58.9 |
Msa0439360 | MtrunA17_Chr7g0244451 | 35.106 | 94 | 59 | 2 | 22 | 114 | 132 | 224 | 5.67e-11 | 58.2 |
Msa0439360 | MtrunA17_Chr2g0279061 | 31.250 | 112 | 70 | 2 | 22 | 126 | 72 | 183 | 5.97e-11 | 57.8 |
Msa0439360 | MtrunA17_Chr4g0076211 | 27.972 | 143 | 82 | 3 | 3 | 126 | 113 | 253 | 6.75e-11 | 58.2 |
Msa0439360 | MtrunA17_Chr4g0038171 | 37.615 | 109 | 55 | 4 | 26 | 124 | 136 | 241 | 6.79e-11 | 58.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0439360 | AT1G71695.1 | 42.157 | 102 | 56 | 2 | 22 | 120 | 153 | 254 | 3.04e-20 | 84.7 |
Msa0439360 | AT5G19890.1 | 40.404 | 99 | 53 | 1 | 22 | 114 | 135 | 233 | 1.61e-17 | 77.0 |
Msa0439360 | AT5G15180.1 | 35.135 | 111 | 65 | 2 | 22 | 125 | 138 | 248 | 7.49e-17 | 75.1 |
Msa0439360 | AT4G37520.1 | 37.963 | 108 | 59 | 3 | 26 | 125 | 142 | 249 | 8.20e-17 | 75.1 |
Msa0439360 | AT4G37520.2 | 37.963 | 108 | 59 | 3 | 26 | 125 | 139 | 246 | 8.97e-17 | 74.7 |
Msa0439360 | AT3G01190.1 | 33.636 | 110 | 66 | 2 | 22 | 125 | 132 | 240 | 3.49e-16 | 73.2 |
Msa0439360 | AT4G33420.1 | 38.542 | 96 | 57 | 1 | 20 | 113 | 140 | 235 | 4.43e-16 | 72.8 |
Msa0439360 | AT4G33420.2 | 38.542 | 96 | 57 | 1 | 20 | 113 | 187 | 282 | 5.75e-16 | 72.8 |
Msa0439360 | AT2G22420.1 | 38.542 | 96 | 52 | 2 | 26 | 114 | 135 | 230 | 1.17e-15 | 71.6 |
Msa0439360 | AT5G19880.1 | 40.367 | 109 | 56 | 3 | 26 | 125 | 139 | 247 | 7.54e-15 | 69.7 |
Msa0439360 | AT4G37530.2 | 37.037 | 108 | 60 | 3 | 26 | 125 | 142 | 249 | 8.06e-15 | 68.9 |
Msa0439360 | AT4G37530.1 | 37.037 | 108 | 60 | 3 | 26 | 125 | 142 | 249 | 1.03e-14 | 69.3 |
Msa0439360 | AT5G42180.1 | 37.000 | 100 | 57 | 1 | 26 | 119 | 134 | 233 | 1.15e-14 | 68.9 |
Msa0439360 | AT1G05240.1 | 35.455 | 110 | 64 | 2 | 23 | 125 | 133 | 242 | 1.17e-14 | 68.9 |
Msa0439360 | AT1G05250.1 | 35.455 | 110 | 64 | 2 | 23 | 125 | 133 | 242 | 1.17e-14 | 68.9 |
Msa0439360 | AT1G44970.1 | 37.000 | 100 | 56 | 2 | 22 | 114 | 153 | 252 | 1.41e-14 | 68.9 |
Msa0439360 | AT5G67400.1 | 36.697 | 109 | 61 | 3 | 25 | 125 | 141 | 249 | 1.91e-14 | 68.6 |
Msa0439360 | AT2G18980.1 | 37.500 | 112 | 62 | 4 | 22 | 125 | 132 | 243 | 2.02e-14 | 68.2 |
Msa0439360 | AT1G14540.1 | 40.000 | 90 | 53 | 1 | 26 | 114 | 133 | 222 | 3.98e-14 | 67.4 |
Msa0439360 | AT4G11290.1 | 35.714 | 98 | 54 | 3 | 22 | 111 | 133 | 229 | 5.05e-14 | 67.4 |
Msa0439360 | AT5G14130.2 | 33.929 | 112 | 65 | 3 | 22 | 124 | 181 | 292 | 2.02e-13 | 65.9 |
Msa0439360 | AT5G14130.1 | 33.929 | 112 | 65 | 3 | 22 | 124 | 140 | 251 | 2.03e-13 | 65.5 |
Msa0439360 | AT5G06730.1 | 35.780 | 109 | 62 | 3 | 26 | 126 | 145 | 253 | 2.93e-13 | 65.1 |
Msa0439360 | AT2G18150.1 | 33.663 | 101 | 60 | 2 | 21 | 114 | 143 | 243 | 3.07e-13 | 65.1 |
Msa0439360 | AT5G05340.1 | 33.654 | 104 | 67 | 2 | 22 | 124 | 138 | 240 | 6.50e-13 | 64.3 |
Msa0439360 | AT3G49960.1 | 37.963 | 108 | 59 | 4 | 26 | 125 | 142 | 249 | 6.83e-13 | 63.9 |
Msa0439360 | AT2G38390.1 | 37.168 | 113 | 62 | 4 | 22 | 125 | 139 | 251 | 1.21e-12 | 63.5 |
Msa0439360 | AT2G41480.1 | 36.697 | 109 | 62 | 2 | 25 | 126 | 136 | 244 | 1.39e-12 | 63.2 |
Msa0439360 | AT4G36430.1 | 33.663 | 101 | 60 | 2 | 21 | 114 | 137 | 237 | 1.58e-12 | 63.2 |
Msa0439360 | AT3G28200.1 | 36.842 | 95 | 59 | 1 | 22 | 115 | 130 | 224 | 2.09e-12 | 62.8 |
Msa0439360 | AT5G40150.1 | 36.170 | 94 | 58 | 2 | 26 | 117 | 145 | 238 | 2.32e-12 | 62.8 |
Msa0439360 | AT3G49110.1 | 38.144 | 97 | 52 | 3 | 26 | 114 | 145 | 241 | 2.91e-12 | 62.4 |
Msa0439360 | AT1G49570.1 | 36.792 | 106 | 58 | 2 | 22 | 118 | 156 | 261 | 3.12e-12 | 62.4 |
Msa0439360 | AT4G30170.1 | 33.929 | 112 | 66 | 3 | 22 | 125 | 134 | 245 | 3.83e-12 | 62.0 |
Msa0439360 | AT5G58400.1 | 36.842 | 95 | 57 | 2 | 22 | 114 | 138 | 231 | 3.87e-12 | 62.0 |
Msa0439360 | AT1G05260.1 | 33.673 | 98 | 57 | 3 | 26 | 115 | 136 | 233 | 4.04e-12 | 62.0 |
Msa0439360 | AT5G06720.1 | 33.945 | 109 | 64 | 3 | 26 | 126 | 144 | 252 | 5.42e-12 | 61.6 |
Msa0439360 | AT5G58390.1 | 34.545 | 110 | 66 | 3 | 22 | 126 | 129 | 237 | 5.97e-12 | 61.2 |
Msa0439360 | AT2G35380.2 | 41.463 | 82 | 43 | 3 | 26 | 105 | 54 | 132 | 8.61e-12 | 60.5 |
Msa0439360 | AT4G08780.1 | 35.644 | 101 | 57 | 3 | 22 | 114 | 132 | 232 | 1.20e-11 | 60.8 |
Msa0439360 | AT3G50990.1 | 32.143 | 112 | 68 | 4 | 22 | 125 | 149 | 260 | 1.21e-11 | 60.5 |
Msa0439360 | AT2G35380.1 | 41.463 | 82 | 43 | 3 | 26 | 105 | 142 | 220 | 1.39e-11 | 60.5 |
Msa0439360 | AT4G17690.1 | 35.789 | 95 | 59 | 2 | 26 | 118 | 139 | 233 | 1.41e-11 | 60.5 |
Msa0439360 | AT3G21770.1 | 32.258 | 93 | 56 | 2 | 26 | 111 | 139 | 231 | 2.24e-11 | 59.7 |
Msa0439360 | AT1G68850.1 | 35.644 | 101 | 58 | 2 | 21 | 114 | 137 | 237 | 2.39e-11 | 59.7 |
Msa0439360 | AT5G64120.1 | 34.234 | 111 | 65 | 4 | 22 | 125 | 139 | 248 | 2.44e-11 | 59.7 |
Msa0439360 | AT2G39040.1 | 32.673 | 101 | 61 | 2 | 24 | 117 | 157 | 257 | 3.82e-11 | 59.3 |
Msa0439360 | AT3G03670.1 | 34.951 | 103 | 58 | 3 | 20 | 113 | 126 | 228 | 4.27e-11 | 58.9 |
Msa0439360 | AT5G47000.1 | 36.170 | 94 | 57 | 2 | 26 | 116 | 146 | 239 | 5.48e-11 | 58.9 |
Msa0439360 | AT5G51890.1 | 32.632 | 95 | 58 | 1 | 26 | 114 | 137 | 231 | 6.22e-11 | 58.5 |
Msa0439360 | AT5G66390.1 | 31.000 | 100 | 62 | 2 | 22 | 114 | 141 | 240 | 6.76e-11 | 58.5 |
Find 29 sgRNAs with CRISPR-Local
Find 33 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCGAGTTGTTTCTTGAAATT+TGG | 0.165142 | 3_3:-5400602 | None:intergenic |
GTCCCTCAACGCCGTTAATT+TGG | 0.208641 | 3_3:+5400646 | Msa0439360:CDS |
CTATCTGGTGCCCACACTTT+TGG | 0.251851 | 3_3:+5400521 | Msa0439360:CDS |
CCCAATGGCACGTCAAAATC+TGG | 0.255614 | 3_3:-5400374 | None:intergenic |
AATATTATGTTACGCAATAA+AGG | 0.298757 | 3_3:-5400344 | None:intergenic |
CTGCATTTACACTGAAGTTT+AGG | 0.301903 | 3_3:-5400409 | None:intergenic |
ATGATTCGGTTGAACATTGT+TGG | 0.380602 | 3_3:-5400557 | None:intergenic |
TCTGTTCGTGCAAATGGTAT+TGG | 0.383002 | 3_3:-5400443 | None:intergenic |
CTGTTCGTGCAAATGGTATT+GGG | 0.387191 | 3_3:-5400442 | None:intergenic |
ACCGATGTAGTTGCTCTATC+TGG | 0.387253 | 3_3:+5400506 | Msa0439360:CDS |
AGTTCATCTGTTCGTGCAAA+TGG | 0.412175 | 3_3:-5400449 | None:intergenic |
TTGAAATTTGGTTCGATTGG+TGG | 0.414542 | 3_3:-5400590 | None:intergenic |
TTGCGTAACATAATATTTGA+AGG | 0.420033 | 3_3:+5400350 | Msa0439360:CDS |
TGTTCAAACATCCAAATTAA+CGG | 0.445931 | 3_3:-5400657 | None:intergenic |
ATCCAAATTAACGGCGTTGA+GGG | 0.449517 | 3_3:-5400648 | None:intergenic |
GTGGGTCGGATTCAATGATT+CGG | 0.450356 | 3_3:-5400571 | None:intergenic |
TTCTTGAAATTTGGTTCGAT+TGG | 0.452274 | 3_3:-5400593 | None:intergenic |
TGAAATTTGGTTCGATTGGT+GGG | 0.456433 | 3_3:-5400589 | None:intergenic |
ATTTGGTTCGATTGGTGGGT+CGG | 0.494826 | 3_3:-5400585 | None:intergenic |
CCAATGGCACGTCAAAATCT+GGG | 0.508698 | 3_3:-5400373 | None:intergenic |
GCGTTGAGGGACTCCTCATT+CGG | 0.514253 | 3_3:-5400635 | None:intergenic |
CTAAACTTCAGTGTAAATGC+AGG | 0.534350 | 3_3:+5400410 | Msa0439360:CDS |
CGAAGCAACATGTCCGAATG+AGG | 0.556767 | 3_3:+5400622 | Msa0439360:CDS |
CATCCAAATTAACGGCGTTG+AGG | 0.565870 | 3_3:-5400649 | None:intergenic |
AATGAGCTTGACCAAAAGTG+TGG | 0.611586 | 3_3:-5400532 | None:intergenic |
ATGAGCTTGACCAAAAGTGT+GGG | 0.655019 | 3_3:-5400531 | None:intergenic |
ACCAGATAGAGCAACTACAT+CGG | 0.673269 | 3_3:-5400507 | None:intergenic |
TACGCAATAAAGGACATCGA+GGG | 0.715776 | 3_3:-5400334 | None:intergenic |
TTACGCAATAAAGGACATCG+AGG | 0.746500 | 3_3:-5400335 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATATTATGTTACGCAATAA+AGG | - | chr3_3:5400347-5400366 | None:intergenic | 20.0% |
! | TTGCGTAACATAATATTTGA+AGG | + | chr3_3:5400350-5400369 | Msa0439360:CDS | 25.0% |
!!! | GAATTTTTTTGATCCGAAAA+CGG | - | chr3_3:5400480-5400499 | None:intergenic | 25.0% |
! | GATGAACTATTAACCGTTTT+CGG | + | chr3_3:5400464-5400483 | Msa0439360:CDS | 30.0% |
! | TTCTTGAAATTTGGTTCGAT+TGG | - | chr3_3:5400596-5400615 | None:intergenic | 30.0% |
!! | TCGAGTTGTTTCTTGAAATT+TGG | - | chr3_3:5400605-5400624 | None:intergenic | 30.0% |
CTGCATTTACACTGAAGTTT+AGG | - | chr3_3:5400412-5400431 | None:intergenic | 35.0% | |
CTAAACTTCAGTGTAAATGC+AGG | + | chr3_3:5400410-5400429 | Msa0439360:CDS | 35.0% | |
!! | ATGATTCGGTTGAACATTGT+TGG | - | chr3_3:5400560-5400579 | None:intergenic | 35.0% |
! | TGAAATTTGGTTCGATTGGT+GGG | - | chr3_3:5400592-5400611 | None:intergenic | 35.0% |
! | TTGAAATTTGGTTCGATTGG+TGG | - | chr3_3:5400593-5400612 | None:intergenic | 35.0% |
TACGCAATAAAGGACATCGA+GGG | - | chr3_3:5400337-5400356 | None:intergenic | 40.0% | |
TTACGCAATAAAGGACATCG+AGG | - | chr3_3:5400338-5400357 | None:intergenic | 40.0% | |
CTGTTCGTGCAAATGGTATT+GGG | - | chr3_3:5400445-5400464 | None:intergenic | 40.0% | |
TCTGTTCGTGCAAATGGTAT+TGG | - | chr3_3:5400446-5400465 | None:intergenic | 40.0% | |
AGTTCATCTGTTCGTGCAAA+TGG | - | chr3_3:5400452-5400471 | None:intergenic | 40.0% | |
ACCAGATAGAGCAACTACAT+CGG | - | chr3_3:5400510-5400529 | None:intergenic | 40.0% | |
! | ATGAGCTTGACCAAAAGTGT+GGG | - | chr3_3:5400534-5400553 | None:intergenic | 40.0% |
AATGAGCTTGACCAAAAGTG+TGG | - | chr3_3:5400535-5400554 | None:intergenic | 40.0% | |
! | ATCCAAATTAACGGCGTTGA+GGG | - | chr3_3:5400651-5400670 | None:intergenic | 40.0% |
CCAATGGCACGTCAAAATCT+GGG | - | chr3_3:5400376-5400395 | None:intergenic | 45.0% | |
!! | CCAGATTTTGACGTGCCATT+GGG | + | chr3_3:5400374-5400393 | Msa0439360:CDS | 45.0% |
! | AGGCTGTCTTTTCTTCCCAA+TGG | - | chr3_3:5400392-5400411 | None:intergenic | 45.0% |
ACCGATGTAGTTGCTCTATC+TGG | + | chr3_3:5400506-5400525 | Msa0439360:CDS | 45.0% | |
GTGGGTCGGATTCAATGATT+CGG | - | chr3_3:5400574-5400593 | None:intergenic | 45.0% | |
! | ATTTGGTTCGATTGGTGGGT+CGG | - | chr3_3:5400588-5400607 | None:intergenic | 45.0% |
CATCCAAATTAACGGCGTTG+AGG | - | chr3_3:5400652-5400671 | None:intergenic | 45.0% | |
!! | CCCAGATTTTGACGTGCCAT+TGG | + | chr3_3:5400373-5400392 | Msa0439360:CDS | 50.0% |
CCCAATGGCACGTCAAAATC+TGG | - | chr3_3:5400377-5400396 | None:intergenic | 50.0% | |
! | CTATCTGGTGCCCACACTTT+TGG | + | chr3_3:5400521-5400540 | Msa0439360:CDS | 50.0% |
CGAAGCAACATGTCCGAATG+AGG | + | chr3_3:5400622-5400641 | Msa0439360:CDS | 50.0% | |
GTCCCTCAACGCCGTTAATT+TGG | + | chr3_3:5400646-5400665 | Msa0439360:CDS | 50.0% | |
GCGTTGAGGGACTCCTCATT+CGG | - | chr3_3:5400638-5400657 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_3 | gene | 5400296 | 5400676 | 5400296 | ID=Msa0439360;Name=Msa0439360 |
chr3_3 | mRNA | 5400296 | 5400676 | 5400296 | ID=Msa0439360-mRNA-1;Parent=Msa0439360;Name=Msa0439360-mRNA-1;_AED=0.53;_eAED=0.53;_QI=0|-1|0|1|-1|1|1|0|126 |
chr3_3 | exon | 5400296 | 5400676 | 5400296 | ID=Msa0439360-mRNA-1:exon:1134;Parent=Msa0439360-mRNA-1 |
chr3_3 | CDS | 5400296 | 5400676 | 5400296 | ID=Msa0439360-mRNA-1:cds;Parent=Msa0439360-mRNA-1 |
Gene Sequence |
Protein sequence |