AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1014550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1014550 MtrunA17_Chr7g0227131 91.150 339 21 2 3 333 2 339 0.0 624
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1014550 AT3G27110.1 78.261 299 58 1 24 322 44 335 2.74e-176 492
Msa1014550 AT3G27110.2 78.261 299 58 1 24 322 44 335 2.74e-176 492
Msa1014550 AT3G27110.5 77.273 264 53 1 24 287 44 300 9.76e-153 431
Msa1014550 AT3G27110.3 75.113 221 48 1 25 245 45 258 3.11e-120 348
Msa1014550 AT3G27110.4 75.229 218 47 1 25 242 45 255 2.82e-119 344

Find 105 sgRNAs with CRISPR-Local

Find 370 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGATCTTCACAACTTAA+TGG 0.245117 7_1:+23601250 Msa1014550:CDS
GCGTGATGATATTATTATTT+GGG 0.251632 7_1:-23598460 None:intergenic
AATAAAACTTAATGCTTTCC+TGG 0.283687 7_1:-23603930 None:intergenic
AGCGTGATGATATTATTATT+TGG 0.292086 7_1:-23598461 None:intergenic
TTTGATGCCACAAGTTAGTT+TGG 0.299814 7_1:+23598272 Msa1014550:five_prime_UTR
CAACAGTTCAATGTTCTTCA+TGG 0.316034 7_1:+23602925 Msa1014550:three_prime_UTR
CCTGACAAGAGCTGAATTGC+AGG 0.321973 7_1:+23601406 Msa1014550:CDS
TATTTATACAATGTATATAC+AGG 0.357155 7_1:-23604201 None:intergenic
TTCAAAGATCCGATCAATTC+GGG 0.357717 7_1:+23598640 Msa1014550:CDS
GAAGTGGGAAAAGCTCTTCT+AGG 0.370728 7_1:+23599146 Msa1014550:CDS
AGGAAAACCTCTTTATCAAC+AGG 0.373713 7_1:-23598755 None:intergenic
CGCTTTCCTTGCTTCGCCTT+CGG 0.376023 7_1:+23598592 Msa1014550:CDS
ATAGCTAATGTATATGCATT+TGG 0.379911 7_1:-23601335 None:intergenic
TTGAACTGCCACCACCGAAC+CGG 0.381380 7_1:-23598622 None:intergenic
TACGGGTTGACGTAGGGAAA+TGG 0.390964 7_1:-23598417 None:intergenic
GTTCAAAGATCCGATCAATT+CGG 0.395360 7_1:+23598639 Msa1014550:CDS
TGAAGTTGAAAGTTAGTTAC+GGG 0.403541 7_1:-23598434 None:intergenic
TTGATGCCACAAGTTAGTTT+GGG 0.408075 7_1:+23598273 Msa1014550:five_prime_UTR
TTTCCCACTTCTTTCAATCC+TGG 0.411937 7_1:-23599134 None:intergenic
TATGCAAATATTCTAACTCT+TGG 0.420212 7_1:+23601746 Msa1014550:CDS
CTAGAAACAGTTAATTCAGC+TGG 0.426446 7_1:-23598680 None:intergenic
CATAAGAGCGAGCTTGCTCC+AGG 0.426915 7_1:-23602601 None:intergenic
ACTAAATGTCGATGCATTCC+TGG 0.427125 7_1:+23602583 Msa1014550:CDS
AACGGAGGAAGCCATGGAAA+TGG 0.429495 7_1:-23598549 None:intergenic
TAGATGAGTTTCTAACTTGT+CGG 0.430575 7_1:-23604142 None:intergenic
CCTGCAATTCAGCTCTTGTC+AGG 0.439183 7_1:-23601406 None:intergenic
TCGTCACCCTGTTGATAAAG+AGG 0.439251 7_1:+23598748 Msa1014550:CDS
TTCTTGTTGCTCAAGACCCT+AGG 0.451122 7_1:+23602396 Msa1014550:CDS
CTTCGCCTTCGGCTAGAGCC+CGG 0.453136 7_1:+23598603 Msa1014550:CDS
CATGTAGTGCAATGCAGAAA+TGG 0.453306 7_1:+23603899 Msa1014550:intron
TTCTTACAATTCCATTTCCA+TGG 0.460892 7_1:+23598538 Msa1014550:exon
TGAACTGCCACCACCGAACC+GGG 0.470402 7_1:-23598621 None:intergenic
ATCTTTGCTGTTGGTGTGAT+CGG 0.470636 7_1:-23602872 None:intergenic
TTGAAGTTGAAAGTTAGTTA+CGG 0.473014 7_1:-23598435 None:intergenic
TATTGGAGGTTTGATAGCTC+AGG 0.473708 7_1:+23602310 Msa1014550:CDS
CTAGTATGAATAACGACAAA+TGG 0.474623 7_1:-23601371 None:intergenic
TTGATGCTGAGAGCGATTCC+AGG 0.477350 7_1:+23599116 Msa1014550:CDS
ATTTCACTAGCACGTAGAAC+AGG 0.489038 7_1:-23602792 None:intergenic
CTTTGACGAACATATAGATC+AGG 0.496513 7_1:-23601305 None:intergenic
CAGGCAGAGGATGCGAAAGT+TGG 0.502736 7_1:-23602773 None:intergenic
ACGGGTTGACGTAGGGAAAT+GGG 0.503986 7_1:-23598416 None:intergenic
GAAAGAAACGGAGGAAGCCA+TGG 0.505736 7_1:-23598555 None:intergenic
CCTTCGGCTAGAGCCCGGTT+CGG 0.507401 7_1:+23598608 Msa1014550:CDS
AACCTTATGTACCATCCGAC+AGG 0.513210 7_1:-23602641 None:intergenic
GCCCTGTCGGATGGTACATA+AGG 0.513731 7_1:+23602639 Msa1014550:CDS
AGGTTTGATAGCTCAGGCTC+TGG 0.513918 7_1:+23602316 Msa1014550:CDS
GCAGAAATGGTGAAAGGTCC+AGG 0.515866 7_1:+23603912 Msa1014550:three_prime_UTR
ACTGCTAGAATCTTTGCTGT+TGG 0.520020 7_1:-23602881 None:intergenic
GCATATACATTAGCTATAAG+TGG 0.522878 7_1:+23601341 Msa1014550:CDS
TATGTACCATCCGACAGGGC+TGG 0.524061 7_1:-23602636 None:intergenic
TATTCTGAACCCGAATTGAT+CGG 0.524550 7_1:-23598649 None:intergenic
TCTGTCCTCATGAAATTAGC+TGG 0.527257 7_1:+23602536 Msa1014550:CDS
TCTTGTTGCTCAAGACCCTA+GGG 0.534728 7_1:+23602397 Msa1014550:CDS
TCATGCTCCTTGAGAACATA+GGG 0.535093 7_1:+23600564 Msa1014550:CDS
CTTGGAGCCTATACTGTACC+TGG 0.537441 7_1:+23601764 Msa1014550:CDS
TTAGTTGATCAGCCAACGAC+GGG 0.537481 7_1:-23602565 None:intergenic
TCACGTACCAGGTACAGTAT+AGG 0.538352 7_1:-23601771 None:intergenic
TGCAGGAACTGTAACAGAGC+AGG 0.540675 7_1:+23600541 Msa1014550:intron
TTGACGTAGGGAAATGGGTA+TGG 0.544265 7_1:-23598411 None:intergenic
ATTTACTGATCCACGGTATG+AGG 0.544907 7_1:-23603986 None:intergenic
CGTGATGATATTATTATTTG+GGG 0.555314 7_1:-23598459 None:intergenic
CTCTAGCCGAAGGCGAAGCA+AGG 0.557684 7_1:-23598598 None:intergenic
AATGTATATGCATTTGGCAC+AGG 0.558363 7_1:-23601329 None:intergenic
GTTAGTTACGGGTTGACGTA+GGG 0.564105 7_1:-23598423 None:intergenic
AGCTGGTGGATGCCCGTCGT+TGG 0.575871 7_1:+23602553 Msa1014550:CDS
CGTTATTCATACTAGCCTAG+TGG 0.579473 7_1:+23601379 Msa1014550:CDS
CGGATGTCCCTATGTTCTCA+AGG 0.581254 7_1:-23600571 None:intergenic
AAAGCTGCTTCCAGCCCTGT+CGG 0.583940 7_1:+23602626 Msa1014550:CDS
GACGAAAATCATCAGCATCA+AGG 0.584171 7_1:-23598730 None:intergenic
AGAGAGAGAGAAATGGAATG+CGG 0.587035 7_1:-23598491 None:intergenic
ATCAGCATCAAGGTCACGAA+AGG 0.587461 7_1:-23598720 None:intergenic
CTCTTGTCAGGAGCTCCACT+AGG 0.594754 7_1:-23601394 None:intergenic
TGGAAGAGCAGATATTCCGC+TGG 0.599292 7_1:+23602336 Msa1014550:CDS
GGTCACCTAAAATGTGATCA+TGG 0.600504 7_1:+23601710 Msa1014550:CDS
TGCAATGCAGAAATGGTGAA+AGG 0.604867 7_1:+23603906 Msa1014550:three_prime_UTR
GTCATGCTCCTTGAGAACAT+AGG 0.610257 7_1:+23600563 Msa1014550:CDS
AGTTAGTTACGGGTTGACGT+AGG 0.611488 7_1:-23598424 None:intergenic
ATTCCAGGATTGAAAGAAGT+GGG 0.612551 7_1:+23599131 Msa1014550:CDS
CGAAAGGCTAAAGCAGCAGA+AGG 0.612586 7_1:-23598704 None:intergenic
CGTTCGCCCAAACTAACTTG+TGG 0.619305 7_1:-23598279 None:intergenic
TGCTGTTGGTGTGATCGGAT+AGG 0.619664 7_1:-23602867 None:intergenic
GATTCCAGGATTGAAAGAAG+TGG 0.623258 7_1:+23599130 Msa1014550:CDS
GTGCTAGTGAAATTGATGAA+TGG 0.627866 7_1:+23602802 Msa1014550:CDS
TTTGACGAACATATAGATCA+GGG 0.629522 7_1:-23601304 None:intergenic
GTAATGACAGAGTTAGCGAT+TGG 0.631346 7_1:+23598242 None:intergenic
TGGCTGAGAAAAGAAAGAAA+CGG 0.639792 7_1:-23598567 None:intergenic
ATTTATACAATGTATATACA+GGG 0.641061 7_1:-23604200 None:intergenic
TTTAGTTGATCAGCCAACGA+CGG 0.641181 7_1:-23602566 None:intergenic
GTCCTCATGAAATTAGCTGG+TGG 0.641650 7_1:+23602539 Msa1014550:CDS
TGATCTTCACAACTTAATGG+CGG 0.645851 7_1:+23601253 Msa1014550:CDS
GGTGTAGATTTACTGATCCA+CGG 0.647971 7_1:-23603993 None:intergenic
GTTAGTTTGGGCGAACGCAG+TGG 0.656986 7_1:+23598285 Msa1014550:five_prime_UTR
CTAGCACGTAGAACAGGCAG+AGG 0.658580 7_1:-23602786 None:intergenic
ATTCAGCTGCTCGAAGCCAG+CGG 0.664309 7_1:-23602352 None:intergenic
ATCCACCAGCTAATTTCATG+AGG 0.667291 7_1:-23602541 None:intergenic
AAAACTATTACCTCATACCG+TGG 0.668572 7_1:+23603976 Msa1014550:three_prime_UTR
GGAAAACCTCTTTATCAACA+GGG 0.673540 7_1:-23598754 None:intergenic
ACCTTATGTACCATCCGACA+GGG 0.674478 7_1:-23602640 None:intergenic
TTGTGCATTTAGAACAATGT+GGG 0.674780 7_1:-23602905 None:intergenic
GGCGAAGCAAGGAAAGCGAG+TGG 0.679161 7_1:-23598587 None:intergenic
TTAGAGTCAAGACAACGAAG+TGG 0.699001 7_1:+23598375 Msa1014550:five_prime_UTR
CTGAGAAAAGAAAGAAACGG+AGG 0.712048 7_1:-23598564 None:intergenic
TTGACGAACATATAGATCAG+GGG 0.713505 7_1:-23601303 None:intergenic
TAAAATGTGATCATGGTGTG+TGG 0.732769 7_1:+23601717 Msa1014550:CDS
GTTGTGCATTTAGAACAATG+TGG 0.747047 7_1:-23602906 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTAATTTCATATATATA+TGG + chr7_1:23599364-23599383 Msa1014550:intron 10.0%
!! ATAACTAAAATATTGTAAGT+TGG + chr7_1:23599467-23599486 Msa1014550:intron 15.0%
!! ATAACACTTATTTATGTAAT+AGG + chr7_1:23599678-23599697 Msa1014550:intron 15.0%
!! TTATTATTAATAGAACAGTT+AGG - chr7_1:23599824-23599843 None:intergenic 15.0%
!!! TTTAAAATATTGAATAGAAG+TGG - chr7_1:23600063-23600082 None:intergenic 15.0%
!!! TTTATTTTAATTTAACAGCA+AGG + chr7_1:23600241-23600260 Msa1014550:intron 15.0%
!!! AAGTTTTGTGTTTTTTTTTT+TGG + chr7_1:23600738-23600757 Msa1014550:intron 15.0%
!! ATGAATATAAAATCAAAACA+GGG - chr7_1:23601619-23601638 None:intergenic 15.0%
!! AATGAATATAAAATCAAAAC+AGG - chr7_1:23601620-23601639 None:intergenic 15.0%
!! TAATAATGTGTATGTATATA+AGG + chr7_1:23601815-23601834 Msa1014550:intron 15.0%
!! TAAAAACCAATTATTTGATT+GGG - chr7_1:23602132-23602151 None:intergenic 15.0%
!! ATAAAAACCAATTATTTGAT+TGG - chr7_1:23602133-23602152 None:intergenic 15.0%
!!! GCATTAAGTTTTATTTATTA+TGG + chr7_1:23603938-23603957 Msa1014550:three_prime_UTR 15.0%
!! AACAATAAAAATGAATATAC+AGG - chr7_1:23604017-23604036 None:intergenic 15.0%
!!! TAGAATATACAAGTAATTTT+TGG - chr7_1:23604114-23604133 None:intergenic 15.0%
!! ATTTATACAATGTATATACA+GGG - chr7_1:23604203-23604222 None:intergenic 15.0%
!! TATTTATACAATGTATATAC+AGG - chr7_1:23604204-23604223 None:intergenic 15.0%
!! AGCATTAACTAAAAATTGAA+CGG - chr7_1:23598869-23598888 None:intergenic 20.0%
!! ATCAGCTATTAAATGATTAA+TGG - chr7_1:23599266-23599285 None:intergenic 20.0%
!! TATAAATTCATAGACATAAG+AGG + chr7_1:23599326-23599345 Msa1014550:intron 20.0%
!! CTTATTTATGTAATAGGAAT+TGG + chr7_1:23599684-23599703 Msa1014550:intron 20.0%
!!! TCTATCCTTCTAAAAAATTT+GGG - chr7_1:23599993-23600012 None:intergenic 20.0%
!!! TTCTATCCTTCTAAAAAATT+TGG - chr7_1:23599994-23600013 None:intergenic 20.0%
!! TACTACTTCATACTTATTTA+CGG + chr7_1:23600158-23600177 Msa1014550:intron 20.0%
!!! ATGAACAAAGCTTTTATAAA+TGG - chr7_1:23600322-23600341 None:intergenic 20.0%
!! GGAAATAACATAAAAGAAAA+CGG - chr7_1:23600929-23600948 None:intergenic 20.0%
!! GTTATACTAGTTAAGAAATT+GGG - chr7_1:23601466-23601485 None:intergenic 20.0%
!! TGTTATACTAGTTAAGAAAT+TGG - chr7_1:23601467-23601486 None:intergenic 20.0%
!!! TGATTTTATATTCATTGTTC+TGG + chr7_1:23601624-23601643 Msa1014550:intron 20.0%
!!! TCTGAAGATTTTAATTATGT+TGG + chr7_1:23601862-23601881 Msa1014550:intron 20.0%
!!! ACTTTTCTCGATAAAAATAA+TGG - chr7_1:23602182-23602201 None:intergenic 20.0%
!! TTCATAATTTATCTGTAGAT+TGG + chr7_1:23602436-23602455 Msa1014550:intron 20.0%
!! TTGCAATTCAACTTTAATAT+CGG - chr7_1:23602701-23602720 None:intergenic 20.0%
!!! TATAAATCTATTTTGAAACG+TGG + chr7_1:23602840-23602859 Msa1014550:CDS 20.0%
!! TTCTATCAAGTTAATATTAC+TGG - chr7_1:23603158-23603177 None:intergenic 20.0%
!!! ATGTTTTAGTAAATGAAACT+CGG - chr7_1:23603297-23603316 None:intergenic 20.0%
!! ATTAGTTAAAATTGCTTATG+TGG - chr7_1:23603638-23603657 None:intergenic 20.0%
!! CAAATTAACAGCATATTATA+TGG - chr7_1:23603802-23603821 None:intergenic 20.0%
!! ATATTAGTGAGAAATGAAAT+CGG - chr7_1:23603858-23603877 None:intergenic 20.0%
!!! AAGTAATTTTTGGTTTCAAA+GGG - chr7_1:23604104-23604123 None:intergenic 20.0%
! TTGAAGTTGAAAGTTAGTTA+CGG - chr7_1:23598438-23598457 None:intergenic 25.0%
! CGTGATGATATTATTATTTG+GGG - chr7_1:23598462-23598481 None:intergenic 25.0%
! GCGTGATGATATTATTATTT+GGG - chr7_1:23598463-23598482 None:intergenic 25.0%
! AGCGTGATGATATTATTATT+TGG - chr7_1:23598464-23598483 None:intergenic 25.0%
!! TTTGGATTGATGATACAAAA+TGG - chr7_1:23598792-23598811 None:intergenic 25.0%
! AATCATTTAATAGCTGATAG+CGG + chr7_1:23599268-23599287 Msa1014550:intron 25.0%
!! AAATATTGTAAGTTGGAGAT+TGG + chr7_1:23599474-23599493 Msa1014550:intron 25.0%
!!! AATTACTTTTTACCTAGAAG+AGG - chr7_1:23599902-23599921 None:intergenic 25.0%
! GAAGTAGTATATACCATATA+GGG - chr7_1:23600147-23600166 None:intergenic 25.0%
! TGAAGTAGTATATACCATAT+AGG - chr7_1:23600148-23600167 None:intergenic 25.0%
! AAGTTGTATGTGCTATATTT+AGG + chr7_1:23600188-23600207 Msa1014550:intron 25.0%
! TAAATGGAAAACAATAACCA+TGG - chr7_1:23600306-23600325 None:intergenic 25.0%
!! TGTTAAAGATACCTGATTTT+TGG - chr7_1:23600606-23600625 None:intergenic 25.0%
! ACATCACATATTGTTATACA+TGG - chr7_1:23600855-23600874 None:intergenic 25.0%
! TAACACTTATTCTTCATTTG+AGG - chr7_1:23600950-23600969 None:intergenic 25.0%
! TATAGAAATACATTCGCAAT+GGG - chr7_1:23600975-23600994 None:intergenic 25.0%
! ATATAGAAATACATTCGCAA+TGG - chr7_1:23600976-23600995 None:intergenic 25.0%
!! ACTTGTTACCAACTTAATAA+TGG + chr7_1:23601029-23601048 Msa1014550:intron 25.0%
!! TAACTAATGTTGTGTTATTG+TGG + chr7_1:23601219-23601238 Msa1014550:intron 25.0%
! ATAGCTAATGTATATGCATT+TGG - chr7_1:23601338-23601357 None:intergenic 25.0%
!! ATAAGGAAAGTTTGAAATGA+TGG - chr7_1:23601580-23601599 None:intergenic 25.0%
! GTTTGACTAACAAATTGATA+AGG - chr7_1:23601597-23601616 None:intergenic 25.0%
! TATGCAAATATTCTAACTCT+TGG + chr7_1:23601746-23601765 Msa1014550:CDS 25.0%
! ACATTATAGAGAGATCTTTA+TGG - chr7_1:23601961-23601980 None:intergenic 25.0%
!! CATTTTCAAAGATGAAAACA+AGG - chr7_1:23601990-23602009 None:intergenic 25.0%
! TTAGTATCCCATTTATATGT+AGG - chr7_1:23602033-23602052 None:intergenic 25.0%
!! ATAAATGGGATACTAAGTTT+TGG + chr7_1:23602037-23602056 Msa1014550:intron 25.0%
! ATTATTTGATTGGGTAAAGA+AGG - chr7_1:23602123-23602142 None:intergenic 25.0%
! TCTTTACCCAATCAAATAAT+TGG + chr7_1:23602123-23602142 Msa1014550:intron 25.0%
! AGAATTTCTGTATCATTTGT+TGG + chr7_1:23602466-23602485 Msa1014550:intron 25.0%
!!! GCTGAATTTTTCTTTTGATT+AGG + chr7_1:23602736-23602755 Msa1014550:intron 25.0%
! TGCACATATATAATATACGA+TGG + chr7_1:23603087-23603106 Msa1014550:intron 25.0%
!!! TTAATATTACTGGTACTGAT+GGG - chr7_1:23603148-23603167 None:intergenic 25.0%
!! TTTCTGTTTCTCATAAGTTT+GGG - chr7_1:23603182-23603201 None:intergenic 25.0%
!! ATTTCTGTTTCTCATAAGTT+TGG - chr7_1:23603183-23603202 None:intergenic 25.0%
! GAGTTAAGATACAATAGATA+AGG + chr7_1:23603346-23603365 Msa1014550:intron 25.0%
! GAAAACAGATGTATTATAGA+AGG + chr7_1:23603485-23603504 Msa1014550:intron 25.0%
! AGATGTATTATAGAAGGAAA+AGG + chr7_1:23603491-23603510 Msa1014550:intron 25.0%
! TTAACAGCATATTATATGGA+AGG - chr7_1:23603798-23603817 None:intergenic 25.0%
! AATAAAACTTAATGCTTTCC+TGG - chr7_1:23603933-23603952 None:intergenic 25.0%
!!! AGTAGAATTTTGATGATAAG+AGG + chr7_1:23604057-23604076 Msa1014550:three_prime_UTR 25.0%
!!! GTAGAATTTTGATGATAAGA+GGG + chr7_1:23604058-23604077 Msa1014550:three_prime_UTR 25.0%
!!! CAAGTAATTTTTGGTTTCAA+AGG - chr7_1:23604105-23604124 None:intergenic 25.0%
TGAAGTTGAAAGTTAGTTAC+GGG - chr7_1:23598437-23598456 None:intergenic 30.0%
TTCTTACAATTCCATTTCCA+TGG + chr7_1:23598538-23598557 Msa1014550:exon 30.0%
ACAAAATGGAATCAGGTAAA+AGG - chr7_1:23598778-23598797 None:intergenic 30.0%
TGATGATACAAAATGGAATC+AGG - chr7_1:23598785-23598804 None:intergenic 30.0%
TAAAAGTTGCATGAGAACTA+AGG - chr7_1:23598820-23598839 None:intergenic 30.0%
! AGTTCTCATGCAACTTTTAA+AGG + chr7_1:23598821-23598840 Msa1014550:intron 30.0%
AGATATTCGTTACAGTTCAA+AGG - chr7_1:23599192-23599211 None:intergenic 30.0%
TCATATATATATGGCTGATG+TGG + chr7_1:23599373-23599392 Msa1014550:intron 30.0%
CTTATACAAGAATTAGTCGA+GGG + chr7_1:23599728-23599747 Msa1014550:intron 30.0%
ATAGAACAGTTAGGTAATCT+GGG - chr7_1:23599815-23599834 None:intergenic 30.0%
AATAGAACAGTTAGGTAATC+TGG - chr7_1:23599816-23599835 None:intergenic 30.0%
ATAAATTTCCATCCTCTTCT+AGG + chr7_1:23599887-23599906 Msa1014550:intron 30.0%
CATGAGACAAACTCATATTT+AGG + chr7_1:23599939-23599958 Msa1014550:intron 30.0%
! TCATATTTAGGCCTTTTTAC+TGG + chr7_1:23599951-23599970 Msa1014550:intron 30.0%
! CATATTTAGGCCTTTTTACT+GGG + chr7_1:23599952-23599971 Msa1014550:intron 30.0%
! TCCTTCTAAAAAATTTGGGA+CGG - chr7_1:23599989-23600008 None:intergenic 30.0%
GAAATTGTGTGAGTTATATC+CGG + chr7_1:23600031-23600050 Msa1014550:intron 30.0%
AAATTGTGTGAGTTATATCC+GGG + chr7_1:23600032-23600051 Msa1014550:intron 30.0%
TTGTATGTGCTATATTTAGG+TGG + chr7_1:23600191-23600210 Msa1014550:intron 30.0%
TTAATTTAACAGCAAGGACT+TGG + chr7_1:23600247-23600266 Msa1014550:intron 30.0%
! AACAAATCAATTTTCCCACT+AGG - chr7_1:23600438-23600457 None:intergenic 30.0%
AAAAACACAAAACTTCGACT+AGG - chr7_1:23600733-23600752 None:intergenic 30.0%
TCCACTCTTACTATATGAAA+AGG + chr7_1:23600767-23600786 Msa1014550:intron 30.0%
CCACTCTTACTATATGAAAA+GGG + chr7_1:23600768-23600787 Msa1014550:intron 30.0%
!! ATTAAGTTGGTAACAAGTAG+AGG - chr7_1:23601027-23601046 None:intergenic 30.0%
!! GGTTTTGTCACATAATTTAC+AGG - chr7_1:23601153-23601172 None:intergenic 30.0%
ATAAATACAGAGTAACTGGA+TGG - chr7_1:23601174-23601193 None:intergenic 30.0%
TGACATAAATACAGAGTAAC+TGG - chr7_1:23601178-23601197 None:intergenic 30.0%
CAACATTAGTTAGTTCAATG+AGG - chr7_1:23601211-23601230 None:intergenic 30.0%
TTCTGATCTTCACAACTTAA+TGG + chr7_1:23601250-23601269 Msa1014550:CDS 30.0%
TTTGACGAACATATAGATCA+GGG - chr7_1:23601307-23601326 None:intergenic 30.0%
GCATATACATTAGCTATAAG+TGG + chr7_1:23601341-23601360 Msa1014550:CDS 30.0%
CTAGTATGAATAACGACAAA+TGG - chr7_1:23601374-23601393 None:intergenic 30.0%
GTGTATGTATATAAGGCATA+TGG + chr7_1:23601822-23601841 Msa1014550:intron 30.0%
ATGTTACTCATACCACATAA+TGG + chr7_1:23601935-23601954 Msa1014550:intron 30.0%
ACCTAGTACCTACATATAAA+TGG + chr7_1:23602022-23602041 Msa1014550:intron 30.0%
CCTAGTACCTACATATAAAT+GGG + chr7_1:23602023-23602042 Msa1014550:intron 30.0%
ATTAAAAGTAGCACACAGAA+TGG - chr7_1:23602226-23602245 None:intergenic 30.0%
ATTAAACGAATTGGAATAGC+TGG - chr7_1:23602268-23602287 None:intergenic 30.0%
GAGGTGATTATTAAACGAAT+TGG - chr7_1:23602277-23602296 None:intergenic 30.0%
!! TAATCACCTCCATTTGTTTT+AGG + chr7_1:23602287-23602306 Msa1014550:intron 30.0%
CAATTCAACTTTAATATCGG+TGG - chr7_1:23602698-23602717 None:intergenic 30.0%
! TTGTGCATTTAGAACAATGT+GGG - chr7_1:23602908-23602927 None:intergenic 30.0%
! GTTAATATTACTGGTACTGA+TGG - chr7_1:23603149-23603168 None:intergenic 30.0%
ATGAGACACTTATAATGAGA+TGG + chr7_1:23603448-23603467 Msa1014550:intron 30.0%
! TATTTTGTTGAGACCTTAAG+AGG - chr7_1:23603577-23603596 None:intergenic 30.0%
ATCTCTATTAGACACTTTGT+TGG + chr7_1:23603683-23603702 Msa1014550:intron 30.0%
TCTCTATTAGACACTTTGTT+GGG + chr7_1:23603684-23603703 Msa1014550:intron 30.0%
GCATATTATATGGAAGGAAA+AGG - chr7_1:23603792-23603811 None:intergenic 30.0%
TGATATCCATTACCATTATG+AGG + chr7_1:23603824-23603843 Msa1014550:intron 30.0%
! TAGATGAGTTTCTAACTTGT+CGG - chr7_1:23604145-23604164 None:intergenic 30.0%
TTTGATGCCACAAGTTAGTT+TGG + chr7_1:23598272-23598291 Msa1014550:five_prime_UTR 35.0%
! TTGATGCCACAAGTTAGTTT+GGG + chr7_1:23598273-23598292 Msa1014550:five_prime_UTR 35.0%
TGTACAGTATGTCCACATTT+GGG + chr7_1:23598308-23598327 Msa1014550:intron 35.0%
TGGCTGAGAAAAGAAAGAAA+CGG - chr7_1:23598570-23598589 None:intergenic 35.0%
GTTCAAAGATCCGATCAATT+CGG + chr7_1:23598639-23598658 Msa1014550:CDS 35.0%
TTCAAAGATCCGATCAATTC+GGG + chr7_1:23598640-23598659 Msa1014550:CDS 35.0%
TATTCTGAACCCGAATTGAT+CGG - chr7_1:23598652-23598671 None:intergenic 35.0%
CTAGAAACAGTTAATTCAGC+TGG - chr7_1:23598683-23598702 None:intergenic 35.0%
GGAAAACCTCTTTATCAACA+GGG - chr7_1:23598757-23598776 None:intergenic 35.0%
AGGAAAACCTCTTTATCAAC+AGG - chr7_1:23598758-23598777 None:intergenic 35.0%
ATGAGAACTAAGGACATGTT+TGG - chr7_1:23598810-23598829 None:intergenic 35.0%
TAGCTGACACTTCAGATTAA+AGG + chr7_1:23598913-23598932 Msa1014550:intron 35.0%
! CTTCAGATTAAAGGTGTGTT+TGG + chr7_1:23598922-23598941 Msa1014550:intron 35.0%
ATTCCAGGATTGAAAGAAGT+GGG + chr7_1:23599131-23599150 Msa1014550:CDS 35.0%
!! GAACTGTCCCTTTTTCATTT+CGG + chr7_1:23599290-23599309 Msa1014550:intron 35.0%
!! AACTGTCCCTTTTTCATTTC+GGG + chr7_1:23599291-23599310 Msa1014550:intron 35.0%
AGCAAACCCGAAATGAAAAA+GGG - chr7_1:23599300-23599319 None:intergenic 35.0%
! ATTGTAAGTTGGAGATTGGA+AGG + chr7_1:23599478-23599497 Msa1014550:intron 35.0%
! TTGTAAGTTGGAGATTGGAA+GGG + chr7_1:23599479-23599498 Msa1014550:intron 35.0%
!! AAAAGCATTATTCTACGCCA+CGG + chr7_1:23599584-23599603 Msa1014550:intron 35.0%
AGCTCACTTAAATTGCCAAT+TGG - chr7_1:23599613-23599632 None:intergenic 35.0%
ATTCCGCATCAATACTTTAC+CGG - chr7_1:23599639-23599658 None:intergenic 35.0%
! AATAGGAATTGGTGACATGT+CGG + chr7_1:23599695-23599714 Msa1014550:intron 35.0%
GACTAATTCTTGTATAAGCC+TGG - chr7_1:23599726-23599745 None:intergenic 35.0%
GCTTATACAAGAATTAGTCG+AGG + chr7_1:23599727-23599746 Msa1014550:intron 35.0%
TGCAAAGTTAACACGTGATA+CGG + chr7_1:23599789-23599808 Msa1014550:intron 35.0%
! ACTTTTTACCTAGAAGAGGA+TGG - chr7_1:23599898-23599917 None:intergenic 35.0%
! CCTTCTAAAAAATTTGGGAC+GGG - chr7_1:23599988-23600007 None:intergenic 35.0%
TGAATAGAAGTGGTATTTCC+CGG - chr7_1:23600053-23600072 None:intergenic 35.0%
TAGTATATACCATATAGGGC+TGG - chr7_1:23600143-23600162 None:intergenic 35.0%
TATGTGCTATATTTAGGTGG+AGG + chr7_1:23600194-23600213 Msa1014550:intron 35.0%
TTCCTGCAACTCATATAAAG+GGG - chr7_1:23600529-23600548 None:intergenic 35.0%
GTTCCTGCAACTCATATAAA+GGG - chr7_1:23600530-23600549 None:intergenic 35.0%
AGTTCCTGCAACTCATATAA+AGG - chr7_1:23600531-23600550 None:intergenic 35.0%
!! ATACCTGATTTTTGGAGACA+AGG - chr7_1:23600598-23600617 None:intergenic 35.0%
GGTTGAATACTATTCAACAC+AGG - chr7_1:23600705-23600724 None:intergenic 35.0%
! CCCTTTTCATATAGTAAGAG+TGG - chr7_1:23600771-23600790 None:intergenic 35.0%
CAGAGCAACCATTATTAAGT+TGG - chr7_1:23601040-23601059 None:intergenic 35.0%
CATTAGTTAGTTCAATGAGG+TGG - chr7_1:23601208-23601227 None:intergenic 35.0%
TGATCTTCACAACTTAATGG+CGG + chr7_1:23601253-23601272 Msa1014550:CDS 35.0%
TTGACGAACATATAGATCAG+GGG - chr7_1:23601306-23601325 None:intergenic 35.0%
CTTTGACGAACATATAGATC+AGG - chr7_1:23601308-23601327 None:intergenic 35.0%
AATGTATATGCATTTGGCAC+AGG - chr7_1:23601332-23601351 None:intergenic 35.0%
CTTGTTTACCATGAAGAATG+GGG - chr7_1:23601505-23601524 None:intergenic 35.0%
GCTTGTTTACCATGAAGAAT+GGG - chr7_1:23601506-23601525 None:intergenic 35.0%
TGCTTGTTTACCATGAAGAA+TGG - chr7_1:23601507-23601526 None:intergenic 35.0%
ACGTGAATGATGTTGGATAT+GGG + chr7_1:23601552-23601571 Msa1014550:intron 35.0%
!! GCCATCAATTTACTTTTCAC+AGG + chr7_1:23601667-23601686 Msa1014550:intron 35.0%
GCCTGTGAAAAGTAAATTGA+TGG - chr7_1:23601671-23601690 None:intergenic 35.0%
!! TTACTTTTCACAGGCTGTTT+TGG + chr7_1:23601676-23601695 Msa1014550:intron 35.0%
! ACACACCATGATCACATTTT+AGG - chr7_1:23601718-23601737 None:intergenic 35.0%
TAAAATGTGATCATGGTGTG+TGG + chr7_1:23601717-23601736 Msa1014550:CDS 35.0%
!!! CGTGATATGGAGCATTTTTT+AGG + chr7_1:23601789-23601808 Msa1014550:intron 35.0%
AGATCTTTATGGCCATTATG+TGG - chr7_1:23601950-23601969 None:intergenic 35.0%
CCCATTTATATGTAGGTACT+AGG - chr7_1:23602026-23602045 None:intergenic 35.0%
CCAATACCTAAAACAAATGG+AGG - chr7_1:23602296-23602315 None:intergenic 35.0%
!!! CCTCCATTTGTTTTAGGTAT+TGG + chr7_1:23602293-23602312 Msa1014550:intron 35.0%
CCTCCAATACCTAAAACAAA+TGG - chr7_1:23602299-23602318 None:intergenic 35.0%
!!! CCATTTGTTTTAGGTATTGG+AGG + chr7_1:23602296-23602315 Msa1014550:intron 35.0%
GTGCTAGTGAAATTGATGAA+TGG + chr7_1:23602802-23602821 Msa1014550:CDS 35.0%
! GTTGTGCATTTAGAACAATG+TGG - chr7_1:23602909-23602928 None:intergenic 35.0%
CAACAGTTCAATGTTCTTCA+TGG + chr7_1:23602925-23602944 Msa1014550:three_prime_UTR 35.0%
TTGTTGCTAGTGTCTCATTT+GGG + chr7_1:23603221-23603240 Msa1014550:intron 35.0%
! TGCGACAAATAATTTGAGAC+AGG + chr7_1:23603413-23603432 Msa1014550:intron 35.0%
AGAGAAATGTCTCTTATCTG+AGG - chr7_1:23603544-23603563 None:intergenic 35.0%
AAAATTGCTTATGTGGCCTA+AGG - chr7_1:23603631-23603650 None:intergenic 35.0%
TCAAGTCCTCATAATGGTAA+TGG - chr7_1:23603833-23603852 None:intergenic 35.0%
AAAACTATTACCTCATACCG+TGG + chr7_1:23603976-23603995 Msa1014550:three_prime_UTR 35.0%
GTGTACAGTATGTCCACATT+TGG + chr7_1:23598307-23598326 Msa1014550:intron 40.0%
GATGATTCATTGCCCAAATG+TGG - chr7_1:23598323-23598342 None:intergenic 40.0%
TTAGAGTCAAGACAACGAAG+TGG + chr7_1:23598375-23598394 Msa1014550:five_prime_UTR 40.0%
AGAGAGAGAGAAATGGAATG+CGG - chr7_1:23598494-23598513 None:intergenic 40.0%
CTGAGAAAAGAAAGAAACGG+AGG - chr7_1:23598567-23598586 None:intergenic 40.0%
GACGAAAATCATCAGCATCA+AGG - chr7_1:23598733-23598752 None:intergenic 40.0%
GTGCTCTGTGTTTATGTTAG+TGG + chr7_1:23599021-23599040 Msa1014550:intron 40.0%
GATTCCAGGATTGAAAGAAG+TGG + chr7_1:23599130-23599149 Msa1014550:CDS 40.0%
TTTCCCACTTCTTTCAATCC+TGG - chr7_1:23599137-23599156 None:intergenic 40.0%
CAGCAAACCCGAAATGAAAA+AGG - chr7_1:23599301-23599320 None:intergenic 40.0%
! ACATAAGAGGCTGTTTCAGA+AGG + chr7_1:23599339-23599358 Msa1014550:intron 40.0%
! CATAAGAGGCTGTTTCAGAA+GGG + chr7_1:23599340-23599359 Msa1014550:intron 40.0%
CATCAAAAACCTTGATGCCA+CGG + chr7_1:23599420-23599439 Msa1014550:intron 40.0%
AAAAGTTTACGAGTCGTGCA+TGG + chr7_1:23599528-23599547 Msa1014550:intron 40.0%
AAAGTTTACGAGTCGTGCAT+GGG + chr7_1:23599529-23599548 Msa1014550:intron 40.0%
GCAATTTAAGTGAGCTAGAC+CGG + chr7_1:23599617-23599636 Msa1014550:intron 40.0%
!! AGACCGGTAAAGTATTGATG+CGG + chr7_1:23599633-23599652 Msa1014550:intron 40.0%
! TTTAGGCCTTTTTACTGGGA+TGG + chr7_1:23599956-23599975 Msa1014550:intron 40.0%
! TTAGGCCTTTTTACTGGGAT+GGG + chr7_1:23599957-23599976 Msa1014550:intron 40.0%
!!! CCCGTCCCAAATTTTTTAGA+AGG + chr7_1:23599985-23600004 Msa1014550:intron 40.0%
AATCAAATGCCAGCCCTATA+TGG + chr7_1:23600131-23600150 Msa1014550:intron 40.0%
! GTTCATCTGAAATGTTCAGC+TGG + chr7_1:23600336-23600355 Msa1014550:intron 40.0%
GAAATGTTCAGCTGGATATC+AGG + chr7_1:23600344-23600363 Msa1014550:intron 40.0%
! AGCTTTTGATCCAGTTACTC+AGG + chr7_1:23600491-23600510 Msa1014550:intron 40.0%
CATGTCATAACCTGAGTAAC+TGG - chr7_1:23600504-23600523 None:intergenic 40.0%
CAGTTACTCAGGTTATGACA+TGG + chr7_1:23600502-23600521 Msa1014550:intron 40.0%
TCATGCTCCTTGAGAACATA+GGG + chr7_1:23600564-23600583 Msa1014550:CDS 40.0%
!! CTGATTTTTGGAGACAAGGA+CGG - chr7_1:23600594-23600613 None:intergenic 40.0%
ACAAAACTTCGACTAGGATG+CGG - chr7_1:23600727-23600746 None:intergenic 40.0%
! GAGTTCACGCATACTCTTTT+AGG - chr7_1:23600907-23600926 None:intergenic 40.0%
AGAGGAGCAAGTTAATTCAC+TGG - chr7_1:23601009-23601028 None:intergenic 40.0%
TAGTTCAATGAGGTGGCATA+AGG - chr7_1:23601201-23601220 None:intergenic 40.0%
! CGTTATTCATACTAGCCTAG+TGG + chr7_1:23601379-23601398 Msa1014550:CDS 40.0%
AGAATGGGGAGAAAACTTCT+TGG - chr7_1:23601491-23601510 None:intergenic 40.0%
! AGTTTTCTCCCCATTCTTCA+TGG + chr7_1:23601494-23601513 Msa1014550:intron 40.0%
GACTTTGACGTGAATGATGT+TGG + chr7_1:23601545-23601564 Msa1014550:intron 40.0%
GACGTGAATGATGTTGGATA+TGG + chr7_1:23601551-23601570 Msa1014550:intron 40.0%
GGTCACCTAAAATGTGATCA+TGG + chr7_1:23601710-23601729 Msa1014550:CDS 40.0%
! ACTGTTTTGTCTGACACCTA+TGG + chr7_1:23601891-23601910 Msa1014550:intron 40.0%
! TGACACCTATGGATTGAACT+GGG + chr7_1:23601902-23601921 Msa1014550:intron 40.0%
TCTTTCCCAGTTCAATCCAT+AGG - chr7_1:23601910-23601929 None:intergenic 40.0%
! TATTGGAGGTTTGATAGCTC+AGG + chr7_1:23602310-23602329 Msa1014550:CDS 40.0%
TTTGACATCAGCATACCCTA+GGG - chr7_1:23602415-23602434 None:intergenic 40.0%
! TTTTGACATCAGCATACCCT+AGG - chr7_1:23602416-23602435 None:intergenic 40.0%
! TTGTTTTCCAACCCTACAAG+AGG + chr7_1:23602505-23602524 Msa1014550:intron 40.0%
AGAGATGACAACCTCTTGTA+GGG - chr7_1:23602519-23602538 None:intergenic 40.0%
TCTGTCCTCATGAAATTAGC+TGG + chr7_1:23602536-23602555 Msa1014550:CDS 40.0%
ATCCACCAGCTAATTTCATG+AGG - chr7_1:23602544-23602563 None:intergenic 40.0%
TTTAGTTGATCAGCCAACGA+CGG - chr7_1:23602569-23602588 None:intergenic 40.0%
ACTAAATGTCGATGCATTCC+TGG + chr7_1:23602583-23602602 Msa1014550:CDS 40.0%
ATTTCACTAGCACGTAGAAC+AGG - chr7_1:23602795-23602814 None:intergenic 40.0%
!! ATCTTTGCTGTTGGTGTGAT+CGG - chr7_1:23602875-23602894 None:intergenic 40.0%
! ACTGCTAGAATCTTTGCTGT+TGG - chr7_1:23602884-23602903 None:intergenic 40.0%
CTTGTTGCTAGTGTCTCATT+TGG + chr7_1:23603220-23603239 Msa1014550:intron 40.0%
TGTTGAGACCTTAAGAGGTT+GGG - chr7_1:23603572-23603591 None:intergenic 40.0%
TTGTTGAGACCTTAAGAGGT+TGG - chr7_1:23603573-23603592 None:intergenic 40.0%
!! GTACAAAGGTGTTAGTTGCA+GGG - chr7_1:23603722-23603741 None:intergenic 40.0%
!! AGTACAAAGGTGTTAGTTGC+AGG - chr7_1:23603723-23603742 None:intergenic 40.0%
GCAACTAACACCTTTGTACT+TGG + chr7_1:23603723-23603742 Msa1014550:intron 40.0%
AACACCTTTGTACTTGGTTC+AGG + chr7_1:23603729-23603748 Msa1014550:intron 40.0%
ACACCTTTGTACTTGGTTCA+GGG + chr7_1:23603730-23603749 Msa1014550:intron 40.0%
ATTCCCTGAACCAAGTACAA+AGG - chr7_1:23603736-23603755 None:intergenic 40.0%
TCGGTATCAAGTCCTCATAA+TGG - chr7_1:23603839-23603858 None:intergenic 40.0%
CATGTAGTGCAATGCAGAAA+TGG + chr7_1:23603899-23603918 Msa1014550:intron 40.0%
TGCAATGCAGAAATGGTGAA+AGG + chr7_1:23603906-23603925 Msa1014550:three_prime_UTR 40.0%
ATTTACTGATCCACGGTATG+AGG - chr7_1:23603989-23604008 None:intergenic 40.0%
GGTGTAGATTTACTGATCCA+CGG - chr7_1:23603996-23604015 None:intergenic 40.0%
TTGACGTAGGGAAATGGGTA+TGG - chr7_1:23598414-23598433 None:intergenic 45.0%
! GTTAGTTACGGGTTGACGTA+GGG - chr7_1:23598426-23598445 None:intergenic 45.0%
! AGTTAGTTACGGGTTGACGT+AGG - chr7_1:23598427-23598446 None:intergenic 45.0%
GAGAGAGAGAGAGAGAGAAA+TGG - chr7_1:23598501-23598520 None:intergenic 45.0%
ATCAGCATCAAGGTCACGAA+AGG - chr7_1:23598723-23598742 None:intergenic 45.0%
! TCGTCACCCTGTTGATAAAG+AGG + chr7_1:23598748-23598767 Msa1014550:CDS 45.0%
TCGTCGTACATGTATGTGTC+AGG + chr7_1:23598995-23599014 Msa1014550:intron 45.0%
GAAGTGGGAAAAGCTCTTCT+AGG + chr7_1:23599146-23599165 Msa1014550:CDS 45.0%
GTTATACATTTCCGTGCCTG+TGG - chr7_1:23599452-23599471 None:intergenic 45.0%
AAGTTTACGAGTCGTGCATG+GGG + chr7_1:23599530-23599549 Msa1014550:intron 45.0%
AAATTGCCAATTGGCTACCG+TGG - chr7_1:23599604-23599623 None:intergenic 45.0%
! TAGGCCTTTTTACTGGGATG+GGG + chr7_1:23599958-23599977 Msa1014550:intron 45.0%
AGTACCCCATCCCAGTAAAA+AGG - chr7_1:23599965-23599984 None:intergenic 45.0%
TGTGTGACATGATTGCACCA+TGG + chr7_1:23600286-23600305 Msa1014550:intron 45.0%
TGCTTGCTTTCAGATCCTAG+TGG + chr7_1:23600420-23600439 Msa1014550:intron 45.0%
GCTTGCTTTCAGATCCTAGT+GGG + chr7_1:23600421-23600440 Msa1014550:intron 45.0%
GTCCCCTTTATATGAGTTGC+AGG + chr7_1:23600524-23600543 Msa1014550:intron 45.0%
GTCATGCTCCTTGAGAACAT+AGG + chr7_1:23600563-23600582 Msa1014550:CDS 45.0%
CGTCCTTGTCTCCAAAAATC+AGG + chr7_1:23600592-23600611 Msa1014550:CDS 45.0%
CAAAACTTCGACTAGGATGC+GGG - chr7_1:23600726-23600745 None:intergenic 45.0%
!!! GCTGTTTTGGCTCATGAGTT+GGG + chr7_1:23601689-23601708 Msa1014550:CDS 45.0%
TCACGTACCAGGTACAGTAT+AGG - chr7_1:23601774-23601793 None:intergenic 45.0%
ACTGTACCTGGTACGTGATA+TGG + chr7_1:23601776-23601795 Msa1014550:intron 45.0%
AATGCTCCATATCACGTACC+AGG - chr7_1:23601785-23601804 None:intergenic 45.0%
! CTGACACCTATGGATTGAAC+TGG + chr7_1:23601901-23601920 Msa1014550:intron 45.0%
TTCTTGTTGCTCAAGACCCT+AGG + chr7_1:23602396-23602415 Msa1014550:CDS 45.0%
TCTTGTTGCTCAAGACCCTA+GGG + chr7_1:23602397-23602416 Msa1014550:CDS 45.0%
ATGACAACCTCTTGTAGGGT+TGG - chr7_1:23602515-23602534 None:intergenic 45.0%
CAGAGATGACAACCTCTTGT+AGG - chr7_1:23602520-23602539 None:intergenic 45.0%
GTCCTCATGAAATTAGCTGG+TGG + chr7_1:23602539-23602558 Msa1014550:CDS 45.0%
TTAGTTGATCAGCCAACGAC+GGG - chr7_1:23602568-23602587 None:intergenic 45.0%
ACCTTATGTACCATCCGACA+GGG - chr7_1:23602643-23602662 None:intergenic 45.0%
AACCTTATGTACCATCCGAC+AGG - chr7_1:23602644-23602663 None:intergenic 45.0%
! ATCTGAGGAGCTTTTCCTCT+GGG - chr7_1:23603529-23603548 None:intergenic 45.0%
! TATCTGAGGAGCTTTTCCTC+TGG - chr7_1:23603530-23603549 None:intergenic 45.0%
TTGCTTATGTGGCCTAAGGA+AGG - chr7_1:23603627-23603646 None:intergenic 45.0%
AGGTGTTAGTTGCAGGGTTT+GGG - chr7_1:23603716-23603735 None:intergenic 45.0%
! AAGGTGTTAGTTGCAGGGTT+TGG - chr7_1:23603717-23603736 None:intergenic 45.0%
CGTTCGCCCAAACTAACTTG+TGG - chr7_1:23598282-23598301 None:intergenic 50.0%
! ACGGGTTGACGTAGGGAAAT+GGG - chr7_1:23598419-23598438 None:intergenic 50.0%
! TACGGGTTGACGTAGGGAAA+TGG - chr7_1:23598420-23598439 None:intergenic 50.0%
AACGGAGGAAGCCATGGAAA+TGG - chr7_1:23598552-23598571 None:intergenic 50.0%
GAAAGAAACGGAGGAAGCCA+TGG - chr7_1:23598558-23598577 None:intergenic 50.0%
CGAAAGGCTAAAGCAGCAGA+AGG - chr7_1:23598707-23598726 None:intergenic 50.0%
TTGATGCTGAGAGCGATTCC+AGG + chr7_1:23599116-23599135 Msa1014550:CDS 50.0%
TGATGTGGCTGCAATTGTGG+TGG + chr7_1:23599388-23599407 Msa1014550:intron 50.0%
GATGTGGCTGCAATTGTGGT+GGG + chr7_1:23599389-23599408 Msa1014550:intron 50.0%
AGTTTACGAGTCGTGCATGG+GGG + chr7_1:23599531-23599550 Msa1014550:intron 50.0%
TGCAGGAACTGTAACAGAGC+AGG + chr7_1:23600541-23600560 Msa1014550:intron 50.0%
CGGATGTCCCTATGTTCTCA+AGG - chr7_1:23600574-23600593 None:intergenic 50.0%
CTGCGCGGAAATGACAGAAA+TGG - chr7_1:23601107-23601126 None:intergenic 50.0%
CCTGCAATTCAGCTCTTGTC+AGG - chr7_1:23601409-23601428 None:intergenic 50.0%
CCTGACAAGAGCTGAATTGC+AGG + chr7_1:23601406-23601425 Msa1014550:CDS 50.0%
!!! GGCTGTTTTGGCTCATGAGT+TGG + chr7_1:23601688-23601707 Msa1014550:intron 50.0%
CTTGGAGCCTATACTGTACC+TGG + chr7_1:23601764-23601783 Msa1014550:CDS 50.0%
! AGGTTTGATAGCTCAGGCTC+TGG + chr7_1:23602316-23602335 Msa1014550:CDS 50.0%
TGGAAGAGCAGATATTCCGC+TGG + chr7_1:23602336-23602355 Msa1014550:CDS 50.0%
TGCTGTTGGTGTGATCGGAT+AGG - chr7_1:23602870-23602889 None:intergenic 50.0%
AGGAAACTCCTGTAACCCAG+AGG + chr7_1:23603511-23603530 Msa1014550:intron 50.0%
! GAGCTTTTCCTCTGGGTTAC+AGG - chr7_1:23603522-23603541 None:intergenic 50.0%
TCTCTCTGCCCAACCTCTTA+AGG + chr7_1:23603561-23603580 Msa1014550:intron 50.0%
CCTAAGGAAGGATAGCAAGG+GGG - chr7_1:23603615-23603634 None:intergenic 50.0%
GCCTAAGGAAGGATAGCAAG+GGG - chr7_1:23603616-23603635 None:intergenic 50.0%
GGCCTAAGGAAGGATAGCAA+GGG - chr7_1:23603617-23603636 None:intergenic 50.0%
TGGCCTAAGGAAGGATAGCA+AGG - chr7_1:23603618-23603637 None:intergenic 50.0%
GCAGAAATGGTGAAAGGTCC+AGG + chr7_1:23603912-23603931 Msa1014550:three_prime_UTR 50.0%
! GTTAGTTTGGGCGAACGCAG+TGG + chr7_1:23598285-23598304 Msa1014550:five_prime_UTR 55.0%
CGCTTTCCTTGCTTCGCCTT+CGG + chr7_1:23598592-23598611 Msa1014550:CDS 55.0%
TTGAACTGCCACCACCGAAC+CGG - chr7_1:23598625-23598644 None:intergenic 55.0%
GGCTGATGTGGCTGCAATTG+TGG + chr7_1:23599385-23599404 Msa1014550:intron 55.0%
TCTACGCCACGGTAGCCAAT+TGG + chr7_1:23599595-23599614 Msa1014550:intron 55.0%
GGTGACATGTCGGAAACACC+AGG + chr7_1:23599705-23599724 Msa1014550:intron 55.0%
CAGCAACATGTGCTGAGCAC+GGG - chr7_1:23599756-23599775 None:intergenic 55.0%
CCAGCAACATGTGCTGAGCA+CGG - chr7_1:23599757-23599776 None:intergenic 55.0%
TTCCGCGCAGTTCAGCTGTA+TGG + chr7_1:23601117-23601136 Msa1014550:intron 55.0%
TGCCATACAGCTGAACTGCG+CGG - chr7_1:23601122-23601141 None:intergenic 55.0%
CTCTTGTCAGGAGCTCCACT+AGG - chr7_1:23601397-23601416 None:intergenic 55.0%
ATTCAGCTGCTCGAAGCCAG+CGG - chr7_1:23602355-23602374 None:intergenic 55.0%
! CATAAGAGCGAGCTTGCTCC+AGG - chr7_1:23602604-23602623 None:intergenic 55.0%
AAAGCTGCTTCCAGCCCTGT+CGG + chr7_1:23602626-23602645 Msa1014550:CDS 55.0%
TATGTACCATCCGACAGGGC+TGG - chr7_1:23602639-23602658 None:intergenic 55.0%
GCCCTGTCGGATGGTACATA+AGG + chr7_1:23602639-23602658 Msa1014550:CDS 55.0%
CAGGCAGAGGATGCGAAAGT+TGG - chr7_1:23602776-23602795 None:intergenic 55.0%
CTAGCACGTAGAACAGGCAG+AGG - chr7_1:23602789-23602808 None:intergenic 55.0%
! CCCCCTTGCTATCCTTCCTT+AGG + chr7_1:23603612-23603631 Msa1014550:intron 55.0%
GGCGAAGCAAGGAAAGCGAG+TGG - chr7_1:23598590-23598609 None:intergenic 60.0%
CTCTAGCCGAAGGCGAAGCA+AGG - chr7_1:23598601-23598620 None:intergenic 60.0%
TGAACTGCCACCACCGAACC+GGG - chr7_1:23598624-23598643 None:intergenic 60.0%
!! GGCTGCAATTGTGGTGGGCA+TGG + chr7_1:23599394-23599413 Msa1014550:intron 60.0%
TGGTTGCGACCGTGGCATCA+AGG - chr7_1:23599432-23599451 None:intergenic 60.0%
CCGTGCTCAGCACATGTTGC+TGG + chr7_1:23599754-23599773 Msa1014550:intron 60.0%
CTTCGCCTTCGGCTAGAGCC+CGG + chr7_1:23598603-23598622 Msa1014550:CDS 65.0%
CCTTCGGCTAGAGCCCGGTT+CGG + chr7_1:23598608-23598627 Msa1014550:CDS 65.0%
GATGCCACGGTCGCAACCAC+AGG + chr7_1:23599433-23599452 Msa1014550:intron 65.0%
CACGGTCGCAACCACAGGCA+CGG + chr7_1:23599438-23599457 Msa1014550:intron 65.0%
! AGCTGGTGGATGCCCGTCGT+TGG + chr7_1:23602553-23602572 Msa1014550:CDS 65.0%
CTGCTTCCAGCCCTGTCGGA+TGG + chr7_1:23602630-23602649 Msa1014550:CDS 65.0%
! CCGAACCGGGCTCTAGCCGA+AGG - chr7_1:23598611-23598630 None:intergenic 70.0%
!! TCGGCTAGAGCCCGGTTCGG+TGG + chr7_1:23598611-23598630 Msa1014550:CDS 70.0%
!! GCTAGAGCCCGGTTCGGTGG+TGG + chr7_1:23598614-23598633 Msa1014550:CDS 70.0%
CGTGCCTGTGGTTGCGACCG+TGG - chr7_1:23599440-23599459 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 23598256 23604242 23598256 ID=Msa1014550;Name=Msa1014550
chr7_1 mRNA 23598256 23604242 23598256 ID=Msa1014550-mRNA-1;Parent=Msa1014550;Name=Msa1014550-mRNA-1;_AED=0.07;_eAED=0.07;_QI=279|1|1|1|0.77|0.6|10|384|333
chr7_1 exon 23598256 23598325 23598256 ID=Msa1014550-mRNA-1:exon:5454;Parent=Msa1014550-mRNA-1
chr7_1 exon 23598348 23598769 23598348 ID=Msa1014550-mRNA-1:exon:5455;Parent=Msa1014550-mRNA-1
chr7_1 exon 23599110 23599167 23599110 ID=Msa1014550-mRNA-1:exon:5456;Parent=Msa1014550-mRNA-1
chr7_1 exon 23600546 23600613 23600546 ID=Msa1014550-mRNA-1:exon:5457;Parent=Msa1014550-mRNA-1
chr7_1 exon 23601248 23601427 23601248 ID=Msa1014550-mRNA-1:exon:5458;Parent=Msa1014550-mRNA-1
chr7_1 exon 23601689 23601785 23601689 ID=Msa1014550-mRNA-1:exon:5459;Parent=Msa1014550-mRNA-1
chr7_1 exon 23602309 23602418 23602309 ID=Msa1014550-mRNA-1:exon:5460;Parent=Msa1014550-mRNA-1
chr7_1 exon 23602527 23602660 23602527 ID=Msa1014550-mRNA-1:exon:5461;Parent=Msa1014550-mRNA-1
chr7_1 exon 23602758 23602946 23602758 ID=Msa1014550-mRNA-1:exon:5462;Parent=Msa1014550-mRNA-1
chr7_1 exon 23603906 23604242 23603906 ID=Msa1014550-mRNA-1:exon:5463;Parent=Msa1014550-mRNA-1
chr7_1 five_prime_UTR 23598256 23598325 23598256 ID=Msa1014550-mRNA-1:five_prime_utr;Parent=Msa1014550-mRNA-1
chr7_1 five_prime_UTR 23598348 23598556 23598348 ID=Msa1014550-mRNA-1:five_prime_utr;Parent=Msa1014550-mRNA-1
chr7_1 CDS 23598557 23598769 23598557 ID=Msa1014550-mRNA-1:cds;Parent=Msa1014550-mRNA-1
chr7_1 CDS 23599110 23599167 23599110 ID=Msa1014550-mRNA-1:cds;Parent=Msa1014550-mRNA-1
chr7_1 CDS 23600546 23600613 23600546 ID=Msa1014550-mRNA-1:cds;Parent=Msa1014550-mRNA-1
chr7_1 CDS 23601248 23601427 23601248 ID=Msa1014550-mRNA-1:cds;Parent=Msa1014550-mRNA-1
chr7_1 CDS 23601689 23601785 23601689 ID=Msa1014550-mRNA-1:cds;Parent=Msa1014550-mRNA-1
chr7_1 CDS 23602309 23602418 23602309 ID=Msa1014550-mRNA-1:cds;Parent=Msa1014550-mRNA-1
chr7_1 CDS 23602527 23602660 23602527 ID=Msa1014550-mRNA-1:cds;Parent=Msa1014550-mRNA-1
chr7_1 CDS 23602758 23602899 23602758 ID=Msa1014550-mRNA-1:cds;Parent=Msa1014550-mRNA-1
chr7_1 three_prime_UTR 23602900 23602946 23602900 ID=Msa1014550-mRNA-1:three_prime_utr;Parent=Msa1014550-mRNA-1
chr7_1 three_prime_UTR 23603906 23604242 23603906 ID=Msa1014550-mRNA-1:three_prime_utr;Parent=Msa1014550-mRNA-1
Gene Sequence

>Msa1014550

ATGGCTTCCTCCGTTTCTTTCTTTTCTCAGCCACTCGCTTTCCTTGCTTCGCCTTCGGCTAGAGCCCGGTTCGGTGGTGGCAGTTCAAAGATCCGATCAATTCGGGTTCAGAATAATCACAAACCAGCTGAATTAACTGTTTCTAGACCTTCTGCTGCTTTAGCCTTTCGTGACCTTGATGCTGATGATTTTCGTCACCCTGTTGATAAAGAGAATACGTTGATGCTGAGAGCGATTCCAGGATTGAAAGAAGTGGGAAAAGCTCTTCTAGGAACTGTAACAGAGCAGGTCATGCTCCTTGAGAACATAGGGACATCCGTCCTTGTCTCCAAAAATCAGCTTTCTGATCTTCACAACTTAATGGCGGAAGCTGCAGAAATATTAAATGTCAATGCCCCTGATCTATATGTTCGTCAAAGTCCTGTGCCAAATGCATATACATTAGCTATAAGTGGTAAACAGCCATTTGTCGTTATTCATACTAGCCTAGTGGAGCTCCTGACAAGAGCTGAATTGCAGGCTGTTTTGGCTCATGAGTTGGGTCACCTAAAATGTGATCATGGTGTGTGGCTTACATATGCAAATATTCTAACTCTTGGAGCCTATACTGTACCTGGTATTGGAGGTTTGATAGCTCAGGCTCTGGAAGAGCAGATATTCCGCTGGCTTCGAGCAGCTGAATTAACTTGTGATCGTGCAGCTCTTCTTGTTGCTCAAGACCCTAGGGTTGTCATCTCTGTCCTCATGAAATTAGCTGGTGGATGCCCGTCGTTGGCTGATCAACTAAATGTCGATGCATTCCTGGAGCAAGCTCGCTCTTATGAAAAAGCTGCTTCCAGCCCTGTCGGATGGTACATAAGGAATGCTCAAACAAGCCAACTTTCGCATCCTCTGCCTGTTCTACGTGCTAGTGAAATTGATGAATGGTCAAGAAGTTCAGCTTATAAATCTATTTTGAAACGTGGAATACCTATCCGATCACACCAACAGCAAAGATTCTAG

Protein sequence

>Msa1014550

MASSVSFFSQPLAFLASPSARARFGGGSSKIRSIRVQNNHKPAELTVSRPSAALAFRDLDADDFRHPVDKENTLMLRAIPGLKEVGKALLGTVTEQVMLLENIGTSVLVSKNQLSDLHNLMAEAAEILNVNAPDLYVRQSPVPNAYTLAISGKQPFVVIHTSLVELLTRAELQAVLAHELGHLKCDHGVWLTYANILTLGAYTVPGIGGLIAQALEEQIFRWLRAAELTCDRAALLVAQDPRVVISVLMKLAGGCPSLADQLNVDAFLEQARSYEKAASSPVGWYIRNAQTSQLSHPLPVLRASEIDEWSRSSAYKSILKRGIPIRSHQQQRF*