AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0853150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0853150 MtrunA17_Chr5g0429771 75.394 317 24 3 1 270 1 310 1.54e-170 473
Msa0853150 MtrunA17_Chr5g0429781 79.433 141 29 0 130 270 1 141 9.13e-83 244
Msa0853150 MtrunA17_Chr5g0429811 76.923 143 33 0 126 268 23 165 7.78e-81 241
Msa0853150 MtrunA17_Chr5g0429791 48.000 125 57 3 1 123 1 119 1.22e-29 110
Msa0853150 MtrunA17_Chr5g0429821 48.413 126 44 7 1 115 1 116 3.39e-23 91.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0853150 AT5G58770.1 55.932 236 57 1 81 269 73 308 1.27e-90 271
Msa0853150 AT5G58780.1 49.372 239 74 2 78 269 63 301 1.15e-73 228
Msa0853150 AT5G58782.1 47.737 243 80 2 74 269 46 288 3.00e-73 226
Msa0853150 AT5G58782.2 47.737 243 80 2 74 269 64 306 3.55e-73 226
Msa0853150 AT2G23410.1 47.479 238 77 2 80 269 65 302 1.57e-68 214
Msa0853150 AT5G58784.1 47.982 223 69 1 84 259 69 291 5.63e-66 208
Msa0853150 AT2G23400.1 41.004 239 79 3 78 269 63 286 8.34e-54 176
Msa0853150 AT2G17570.1 26.295 251 103 3 85 260 39 282 1.58e-20 89.4
Msa0853150 AT5G60500.1 25.532 235 112 5 85 263 34 261 4.55e-16 76.3
Msa0853150 AT5G60510.1 25.532 235 112 5 85 263 35 262 7.13e-16 75.9

Find 72 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAACGTCTCTGTCTATTT+TGG 0.158938 5_4:+44664395 None:intergenic
AGAAAACTTTGGCCAGATTT+TGG 0.177145 5_4:-44664451 Msa0853150:CDS
TGCCAAAATAAGATGGAATT+TGG 0.186602 5_4:+44664705 None:intergenic
TACCAAATTCCATCTTATTT+TGG 0.187683 5_4:-44664707 Msa0853150:CDS
AATGCCATCTTGCACTTTCT+TGG 0.210412 5_4:+44664633 None:intergenic
CAAAATAGACAGAGACGTTT+TGG 0.290018 5_4:-44664394 Msa0853150:CDS
CATATACTTATTCTCCAATA+TGG 0.302977 5_4:-44664351 Msa0853150:three_prime_UTR
TAAGCATGTGGCGGTGATTA+TGG 0.306230 5_4:-44667701 Msa0853150:CDS
TAATTTCTTGTTATGGCAAT+TGG 0.324656 5_4:-44664497 Msa0853150:CDS
CTCATTCTCGATATTCTTCA+AGG 0.331892 5_4:-44667849 Msa0853150:CDS
AATAAATACCACAACCATAT+TGG 0.339414 5_4:+44664337 None:intergenic
GGGTTAGTAATTTCTTGTTA+TGG 0.341933 5_4:-44664504 Msa0853150:CDS
GCAAGATGGCATTATTCATT+TGG 0.346742 5_4:-44664623 Msa0853150:CDS
AACTCATCCTTTCCAAAATC+TGG 0.362218 5_4:+44664439 None:intergenic
TTAGTAGTAGTAGTTGTCTT+TGG 0.362349 5_4:+44667904 None:intergenic
CTGGTCCGTATTAGTAAATC+CGG 0.368742 5_4:+44664538 None:intergenic
CATATTGGAGAATAAGTATA+TGG 0.382665 5_4:+44664352 None:intergenic
ATGGGAGGTGGGCAAAGATG+AGG 0.382978 5_4:-44667672 Msa0853150:CDS
TACTACTAACCATGTTCATC+GGG 0.399960 5_4:-44667890 Msa0853150:CDS
TTCAGAAATAGAGCCATTGC+CGG 0.414839 5_4:-44667749 Msa0853150:CDS
CTTACCCGGATTTACTAATA+CGG 0.419675 5_4:-44664543 Msa0853150:CDS
AAATGAAAATATTATTGAAA+AGG 0.447113 5_4:-44664593 Msa0853150:CDS
GTAGTAGTAGTTGTCTTTGG+TGG 0.450585 5_4:+44667907 None:intergenic
CGGTGATTATGGACGGGAAT+GGG 0.455731 5_4:-44667690 Msa0853150:CDS
TGGGAGGTGGGCAAAGATGA+GGG 0.455809 5_4:-44667671 Msa0853150:CDS
GGGAGGTGGGCAAAGATGAG+GGG 0.456021 5_4:-44667670 Msa0853150:CDS
GGAATTCAAATATCTGTGAT+TGG 0.471810 5_4:-44664799 Msa0853150:CDS
ACGGACCAGTGGAGAACTTA+GGG 0.473431 5_4:-44664524 Msa0853150:CDS
GCTTGCAGTTCCTCCGGCAA+TGG 0.479704 5_4:+44667736 None:intergenic
GGAGGTGGGCAAAGATGAGG+GGG 0.479875 5_4:-44667669 Msa0853150:CDS
CGCGGCAATAGTGACGCGTT+TGG 0.485624 5_4:+44667819 None:intergenic
AACTCTTATTGTATTTATTG+TGG 0.486171 5_4:-44664282 Msa0853150:three_prime_UTR
CCGTCTGCGGGTCATGTAGC+CGG 0.489572 5_4:-44667640 Msa0853150:CDS
CTTATTCTCCAATATGGTTG+TGG 0.490071 5_4:-44664345 Msa0853150:three_prime_UTR
TTATGGACGGGAATGGGAGG+TGG 0.493196 5_4:-44667684 Msa0853150:CDS
AGCTTACTGCCAAAATAAGA+TGG 0.496898 5_4:+44664698 None:intergenic
TATGGTTGTGGTATTTATTG+TGG 0.502620 5_4:-44664333 Msa0853150:three_prime_UTR
CGTATTAGTAAATCCGGGTA+AGG 0.505626 5_4:+44664544 None:intergenic
AGCTCCGCTTGCAGTTCCTC+CGG 0.507703 5_4:+44667730 None:intergenic
TACGGACCAGTGGAGAACTT+AGG 0.513930 5_4:-44664525 Msa0853150:CDS
GCGGTGATTATGGACGGGAA+TGG 0.517607 5_4:-44667691 Msa0853150:CDS
CTACTACTAACCATGTTCAT+CGG 0.518028 5_4:-44667891 Msa0853150:CDS
ATGGTTGTGGTATTTATTGT+GGG 0.530122 5_4:-44664332 Msa0853150:three_prime_UTR
CGGCTACATGACCCGCAGAC+GGG 0.532986 5_4:+44667641 None:intergenic
ATAATCACCGCCACATGCTT+AGG 0.560502 5_4:+44667703 None:intergenic
TTGTACAGAATTTCCTTACC+CGG 0.560525 5_4:-44664557 Msa0853150:CDS
TATGGACGGGAATGGGAGGT+GGG 0.565954 5_4:-44667683 Msa0853150:CDS
ACTAACCCTAAGTTCTCCAC+TGG 0.570013 5_4:+44664519 None:intergenic
ATGTGGCGGTGATTATGGAC+GGG 0.576395 5_4:-44667696 Msa0853150:CDS
TGTAAAGTCGTTGAGAAGGA+TGG 0.579930 5_4:-44667617 Msa0853150:CDS
GGCTACATGACCCGCAGACG+GGG 0.586275 5_4:+44667642 None:intergenic
CATGTGGCGGTGATTATGGA+CGG 0.587809 5_4:-44667697 Msa0853150:CDS
ATTGCCGGAGGAACTGCAAG+CGG 0.596025 5_4:-44667734 Msa0853150:CDS
TGATTATGGACGGGAATGGG+AGG 0.615382 5_4:-44667687 Msa0853150:CDS
CCGGCTACATGACCCGCAGA+CGG 0.616650 5_4:+44667640 None:intergenic
CAAACGCGTCACTATTGCCG+CGG 0.621205 5_4:-44667818 Msa0853150:CDS
CCGGTGTAAAGTCGTTGAGA+AGG 0.624155 5_4:-44667621 Msa0853150:CDS
AGTCGTTGAGAAGGATGGTG+AGG 0.625194 5_4:-44667612 Msa0853150:intron
GGAGCTGATGCCTAAGCATG+TGG 0.626089 5_4:-44667713 Msa0853150:CDS
GGTGGATGGGGAAACTTCCG+TGG 0.636917 5_4:-44667782 Msa0853150:CDS
CCTTCTCAACGACTTTACAC+CGG 0.638232 5_4:+44667621 None:intergenic
TAGTGCTGAGGAGAGTACAA+AGG 0.639099 5_4:-44664734 Msa0853150:CDS
AGAAATAGAGCCATTGCCGG+AGG 0.640104 5_4:-44667746 Msa0853150:CDS
GTAGCCAAGAAAGTGCAAGA+TGG 0.652351 5_4:-44664637 Msa0853150:CDS
TGGTCCGTATTAGTAAATCC+GGG 0.652721 5_4:+44664539 None:intergenic
CACCTGATCCTGAAAAGCCG+CGG 0.664185 5_4:+44667801 None:intergenic
GCTACATGACCCGCAGACGG+GGG 0.669075 5_4:+44667643 None:intergenic
AAGTATGATAGCTAGTGCTG+AGG 0.671510 5_4:-44664746 Msa0853150:CDS
CTACTAACCATGTTCATCGG+GGG 0.676277 5_4:-44667888 Msa0853150:CDS
ACTACTAACCATGTTCATCG+GGG 0.699404 5_4:-44667889 Msa0853150:CDS
GATTTACTAATACGGACCAG+TGG 0.708808 5_4:-44664535 Msa0853150:CDS
GCTGATGCCTAAGCATGTGG+CGG 0.712093 5_4:-44667710 Msa0853150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAATAATAATATTAAAA+AGG + chr5_4:44665236-44665255 None:intergenic 0.0%
!!! AATTAATATATATATTTTTT+AGG - chr5_4:44665375-44665394 Msa0853150:intron 0.0%
!!! ATTAATATATATATTTTTTA+GGG - chr5_4:44665376-44665395 Msa0853150:intron 0.0%
!!! AATTATTATTTTTAAAAAAA+TGG - chr5_4:44665520-44665539 Msa0853150:intron 0.0%
!!! CAACAAAATATTTTAAAATA+TGG + chr5_4:44665178-44665197 None:intergenic 10.0%
!!! ATATCTATATATTTTTTGAA+AGG + chr5_4:44665290-44665309 None:intergenic 10.0%
!!! TCATTTTTTTTTTTTTTTTG+TGG + chr5_4:44665659-44665678 None:intergenic 10.0%
!! AGAAAATAATTACTAAATTA+AGG - chr5_4:44666062-44666081 Msa0853150:intron 10.0%
!! AAATGAAAATATTATTGAAA+AGG - chr5_4:44667617-44667636 Msa0853150:CDS 10.0%
!!! TTATTCTTAGTTTTGATTAT+TGG - chr5_4:44664763-44664782 Msa0853150:CDS 15.0%
!! AAACTACTTGTAATAAAATA+TGG + chr5_4:44664916-44664935 None:intergenic 15.0%
!!! TTTTTTTTTTTTTTTTGTGG+TGG + chr5_4:44665656-44665675 None:intergenic 15.0%
!! ATAATTACTAAATTAAGGAA+AGG - chr5_4:44666067-44666086 Msa0853150:intron 15.0%
!! TAATTACTAAATTAAGGAAA+GGG - chr5_4:44666068-44666087 Msa0853150:intron 15.0%
!! TCATATACATCATTTAATTA+TGG - chr5_4:44666419-44666438 Msa0853150:intron 15.0%
!! CATATACATCATTTAATTAT+GGG - chr5_4:44666420-44666439 Msa0853150:intron 15.0%
!! AATGCTATTAAAATTAAGTA+GGG + chr5_4:44666908-44666927 None:intergenic 15.0%
!! AAATGCTATTAAAATTAAGT+AGG + chr5_4:44666907-44666926 None:intergenic 15.0%
!! AGATAAAAAGTAATAAAATC+TGG + chr5_4:44666686-44666705 None:intergenic 15.0%
!! TTCAAAAATTTAAGAGTTTA+AGG - chr5_4:44666817-44666836 Msa0853150:intron 15.0%
!! AAATGCTATTAAAATTAAGT+AGG - chr5_4:44666907-44666926 Msa0853150:intron 15.0%
!! AATGCTATTAAAATTAAGTA+GGG - chr5_4:44666908-44666927 Msa0853150:intron 15.0%
!! TATACGTCATTATAATTAAA+GGG + chr5_4:44666982-44667001 None:intergenic 15.0%
!! ATATACGTCATTATAATTAA+AGG + chr5_4:44666983-44667002 None:intergenic 15.0%
!!! TTTTCTTTAATAGAAAACTT+TGG - chr5_4:44667748-44667767 Msa0853150:CDS 15.0%
!!! TTTTTTTGAGAAAATTATTG+TGG - chr5_4:44667956-44667975 Msa0853150:CDS 15.0%
!! AATTTATTGTTCTTTCAAAG+AGG + chr5_4:44664831-44664850 None:intergenic 20.0%
!! GTATATATAAATGTCTCTTA+AGG + chr5_4:44665613-44665632 None:intergenic 20.0%
!! TTTATATATACTGAGATGAA+TGG - chr5_4:44665622-44665641 Msa0853150:intron 20.0%
!!! TCTCAATATCAATGTTTTTA+AGG + chr5_4:44665845-44665864 None:intergenic 20.0%
!! AATTACTAAATTAAGGAAAG+GGG - chr5_4:44666069-44666088 Msa0853150:intron 20.0%
!!! GAGAGTATTTTTTTTTCTAT+AGG - chr5_4:44666155-44666174 Msa0853150:intron 20.0%
!!! ATGTTGATAACTTTTTCAAT+AGG - chr5_4:44666224-44666243 Msa0853150:intron 20.0%
!!! TGTTGATAACTTTTTCAATA+GGG - chr5_4:44666225-44666244 Msa0853150:intron 20.0%
!! AAACAAATTTGAATTGAGTA+GGG + chr5_4:44666556-44666575 None:intergenic 20.0%
!! TAAACAAATTTGAATTGAGT+AGG + chr5_4:44666557-44666576 None:intergenic 20.0%
!!! AATTTTGCGATAATTTTTTG+CGG + chr5_4:44666651-44666670 None:intergenic 20.0%
!! TGTAAGATCACTTAATATAA+GGG + chr5_4:44667031-44667050 None:intergenic 20.0%
!! ATGTAAGATCACTTAATATA+AGG + chr5_4:44667032-44667051 None:intergenic 20.0%
!!! AATATGTCACTTAATATAAG+GGG + chr5_4:44667356-44667375 None:intergenic 20.0%
!!! GAATATGTCACTTAATATAA+GGG + chr5_4:44667357-44667376 None:intergenic 20.0%
!!! TGAATATGTCACTTAATATA+AGG + chr5_4:44667358-44667377 None:intergenic 20.0%
!! AACTCTTATTGTATTTATTG+TGG - chr5_4:44667928-44667947 Msa0853150:CDS 20.0%
!!! GTTATAAGAGTTTTATCTAG+TGG + chr5_4:44664279-44664298 None:intergenic 25.0%
! AGTGAAATTAAAATGACCTT+AGG + chr5_4:44664690-44664709 None:intergenic 25.0%
! AATTACTTAAAGCAGTCATA+GGG + chr5_4:44665433-44665452 None:intergenic 25.0%
! TAATTACTTAAAGCAGTCAT+AGG + chr5_4:44665434-44665453 None:intergenic 25.0%
! TCTTGAGTATAAAAAACGAA+AGG + chr5_4:44666130-44666149 None:intergenic 25.0%
! AGAAAAAAAAATACTCTCTC+TGG + chr5_4:44666153-44666172 None:intergenic 25.0%
!! CTATAGGTATTTTTCATTAG+AGG - chr5_4:44666171-44666190 Msa0853150:intron 25.0%
! AGTGCAGAAAAACAAAATTA+GGG + chr5_4:44666523-44666542 None:intergenic 25.0%
!!! TAATCAAACTTTGTTTTAGC+AGG - chr5_4:44666845-44666864 Msa0853150:intron 25.0%
!!! AATCAAACTTTGTTTTAGCA+GGG - chr5_4:44666846-44666865 Msa0853150:intron 25.0%
! ACTTAATATAAGGGGAAAAA+TGG + chr5_4:44667022-44667041 None:intergenic 25.0%
! GTAAGATCACTTAATATAAG+GGG + chr5_4:44667030-44667049 None:intergenic 25.0%
!! ATATGTCACTTAATATAAGG+GGG + chr5_4:44667355-44667374 None:intergenic 25.0%
!! ATCATACTTTTCAATGACTT+GGG + chr5_4:44667453-44667472 None:intergenic 25.0%
!! TATCATACTTTTCAATGACT+TGG + chr5_4:44667454-44667473 None:intergenic 25.0%
!!! TACCAAATTCCATCTTATTT+TGG - chr5_4:44667503-44667522 Msa0853150:intron 25.0%
!! TAATTTCTTGTTATGGCAAT+TGG - chr5_4:44667713-44667732 Msa0853150:CDS 25.0%
!!! TCTATTTTGGAATGAAGTTA+AGG + chr5_4:44667805-44667824 None:intergenic 25.0%
! CATATTGGAGAATAAGTATA+TGG + chr5_4:44667861-44667880 None:intergenic 25.0%
! CATATACTTATTCTCCAATA+TGG - chr5_4:44667859-44667878 Msa0853150:CDS 25.0%
! AATAAATACCACAACCATAT+TGG + chr5_4:44667876-44667895 None:intergenic 25.0%
TTAGTAGTAGTAGTTGTCTT+TGG + chr5_4:44664309-44664328 None:intergenic 30.0%
ATGACATTAGTTATCGATAG+TGG - chr5_4:44664740-44664759 Msa0853150:CDS 30.0%
!!! GTTTTGATTATTGGTGTTAC+TGG - chr5_4:44664772-44664791 Msa0853150:CDS 30.0%
! TAGTGATGCATTGATATTGT+AGG - chr5_4:44665085-44665104 Msa0853150:intron 30.0%
! AGTGATGCATTGATATTGTA+GGG - chr5_4:44665086-44665105 Msa0853150:intron 30.0%
ATTACTTAAAGCAGTCATAG+GGG + chr5_4:44665432-44665451 None:intergenic 30.0%
! TTGTATAACCTCTTTTTGAC+AGG - chr5_4:44665807-44665826 Msa0853150:intron 30.0%
! TGTATAACCTCTTTTTGACA+GGG - chr5_4:44665808-44665827 Msa0853150:intron 30.0%
ATAATTTCCCTGTCAAAAAG+AGG + chr5_4:44665818-44665837 None:intergenic 30.0%
! AAAACACTGTGTTTTCTTCT+TGG - chr5_4:44665927-44665946 Msa0853150:intron 30.0%
!!! AACACACTTTGTTTTCTTCT+TGG - chr5_4:44666034-44666053 Msa0853150:intron 30.0%
!! TACAAGGTCGCTATTTTATA+GGG + chr5_4:44666939-44666958 None:intergenic 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG + chr5_4:44666938-44666957 None:intergenic 30.0%
CAGTGCAGAAAAACAAAATT+AGG + chr5_4:44666524-44666543 None:intergenic 30.0%
CAAGATTAGAACACTATGAA+AGG + chr5_4:44666783-44666802 None:intergenic 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG - chr5_4:44666938-44666957 Msa0853150:intron 30.0%
!! TACAAGGTCGCTATTTTATA+GGG - chr5_4:44666939-44666958 Msa0853150:intron 30.0%
TACCTCTAATGACAAAGTAA+TGG + chr5_4:44667079-44667098 None:intergenic 30.0%
ACAAATAACCAATGTGAGTT+GGG + chr5_4:44667194-44667213 None:intergenic 30.0%
AACAAATAACCAATGTGAGT+TGG + chr5_4:44667195-44667214 None:intergenic 30.0%
ACTTAATATAAGGGGGAAAA+AGG + chr5_4:44667348-44667367 None:intergenic 30.0%
AACACCATTTGCTTTGTAAT+AGG - chr5_4:44667385-44667404 Msa0853150:intron 30.0%
ACACCATTTGCTTTGTAATA+GGG - chr5_4:44667386-44667405 Msa0853150:intron 30.0%
GGAATTCAAATATCTGTGAT+TGG - chr5_4:44667411-44667430 Msa0853150:intron 30.0%
! TCATACTTTTCAATGACTTG+GGG + chr5_4:44667452-44667471 None:intergenic 30.0%
TGCCAAAATAAGATGGAATT+TGG + chr5_4:44667508-44667527 None:intergenic 30.0%
! GGGTTAGTAATTTCTTGTTA+TGG - chr5_4:44667706-44667725 Msa0853150:CDS 30.0%
TATGGTTGTGGTATTTATTG+TGG - chr5_4:44667877-44667896 Msa0853150:CDS 30.0%
ATGGTTGTGGTATTTATTGT+GGG - chr5_4:44667878-44667897 Msa0853150:CDS 30.0%
!! AGAGTTTTATCTAGTGGCAT+GGG + chr5_4:44664273-44664292 None:intergenic 35.0%
!! AAGAGTTTTATCTAGTGGCA+TGG + chr5_4:44664274-44664293 None:intergenic 35.0%
CTACTACTAACCATGTTCAT+CGG - chr5_4:44664319-44664338 Msa0853150:three_prime_UTR 35.0%
TACTACTAACCATGTTCATC+GGG - chr5_4:44664320-44664339 Msa0853150:three_prime_UTR 35.0%
CTCATTCTCGATATTCTTCA+AGG - chr5_4:44664361-44664380 Msa0853150:three_prime_UTR 35.0%
! TTCTGAAAAATCTTCGTCCA+CGG + chr5_4:44664448-44664467 None:intergenic 35.0%
GTGTTATAGTTGGGGAATAA+AGG - chr5_4:44664623-44664642 Msa0853150:CDS 35.0%
TTGCATTCTCAACCGATAAT+TGG - chr5_4:44664658-44664677 Msa0853150:CDS 35.0%
CTTAGGTCGAATCCAATTAT+CGG + chr5_4:44664673-44664692 None:intergenic 35.0%
AACAAATAACCAACGTGAGT+TGG + chr5_4:44666308-44666327 None:intergenic 35.0%
AAGTAGGGACTAAACTTACA+AGG + chr5_4:44666923-44666942 None:intergenic 35.0%
AAGTAGGGACTAAACTTACA+AGG - chr5_4:44666923-44666942 Msa0853150:intron 35.0%
CACCATTACTTTGTCATTAG+AGG - chr5_4:44667074-44667093 Msa0853150:intron 35.0%
CATCCCTATTACAAAGCAAA+TGG + chr5_4:44667392-44667411 None:intergenic 35.0%
CATTTGCTTTGTAATAGGGA+TGG - chr5_4:44667390-44667409 Msa0853150:intron 35.0%
AGCTTACTGCCAAAATAAGA+TGG + chr5_4:44667515-44667534 None:intergenic 35.0%
!! ATTTTGGCAGTAAGCTATAG+TGG - chr5_4:44667519-44667538 Msa0853150:intron 35.0%
GCAAGATGGCATTATTCATT+TGG - chr5_4:44667587-44667606 Msa0853150:intron 35.0%
TTGTACAGAATTTCCTTACC+CGG - chr5_4:44667653-44667672 Msa0853150:CDS 35.0%
CTTACCCGGATTTACTAATA+CGG - chr5_4:44667667-44667686 Msa0853150:CDS 35.0%
! AGAAAACTTTGGCCAGATTT+TGG - chr5_4:44667759-44667778 Msa0853150:CDS 35.0%
AACTCATCCTTTCCAAAATC+TGG + chr5_4:44667774-44667793 None:intergenic 35.0%
! CAAAACGTCTCTGTCTATTT+TGG + chr5_4:44667818-44667837 None:intergenic 35.0%
! CAAAATAGACAGAGACGTTT+TGG - chr5_4:44667816-44667835 Msa0853150:CDS 35.0%
CTTATTCTCCAATATGGTTG+TGG - chr5_4:44667865-44667884 Msa0853150:CDS 35.0%
GTAGTAGTAGTTGTCTTTGG+TGG + chr5_4:44664306-44664325 None:intergenic 40.0%
ACTACTAACCATGTTCATCG+GGG - chr5_4:44664321-44664340 Msa0853150:three_prime_UTR 40.0%
TTCAGAAATAGAGCCATTGC+CGG - chr5_4:44664461-44664480 Msa0853150:CDS 40.0%
TGTAAAGTCGTTGAGAAGGA+TGG - chr5_4:44664593-44664612 Msa0853150:CDS 40.0%
TGGTGAGGTTGTGTTATAGT+TGG - chr5_4:44664613-44664632 Msa0853150:CDS 40.0%
GGTGAGGTTGTGTTATAGTT+GGG - chr5_4:44664614-44664633 Msa0853150:CDS 40.0%
GTGAGGTTGTGTTATAGTTG+GGG - chr5_4:44664615-44664634 Msa0853150:CDS 40.0%
CGATAATTGGATTCGACCTA+AGG - chr5_4:44664671-44664690 Msa0853150:CDS 40.0%
! CTGAAATTGAAGCACTAGAG+AGG - chr5_4:44664851-44664870 Msa0853150:intron 40.0%
CAATGCTTTGATTCATCGCA+TGG - chr5_4:44667143-44667162 Msa0853150:intron 40.0%
ACTGATTGACATCACATGCT+TGG + chr5_4:44667240-44667259 None:intergenic 40.0%
AAGTATGATAGCTAGTGCTG+AGG - chr5_4:44667464-44667483 Msa0853150:intron 40.0%
AATGCCATCTTGCACTTTCT+TGG + chr5_4:44667580-44667599 None:intergenic 40.0%
CGTATTAGTAAATCCGGGTA+AGG + chr5_4:44667669-44667688 None:intergenic 40.0%
TGGTCCGTATTAGTAAATCC+GGG + chr5_4:44667674-44667693 None:intergenic 40.0%
CTGGTCCGTATTAGTAAATC+CGG + chr5_4:44667675-44667694 None:intergenic 40.0%
GATTTACTAATACGGACCAG+TGG - chr5_4:44667675-44667694 Msa0853150:CDS 40.0%
!! ACTTTGGCCAGATTTTGGAA+AGG - chr5_4:44667764-44667783 Msa0853150:CDS 40.0%
! AATAGACAGAGACGTTTTGG+TGG - chr5_4:44667819-44667838 Msa0853150:CDS 40.0%
CTACTAACCATGTTCATCGG+GGG - chr5_4:44664322-44664341 Msa0853150:three_prime_UTR 45.0%
!! CTTTTCAGGATCAGGTGGAT+GGG - chr5_4:44664415-44664434 Msa0853150:CDS 45.0%
!! TTTTCAGGATCAGGTGGATG+GGG - chr5_4:44664416-44664435 Msa0853150:CDS 45.0%
ATAATCACCGCCACATGCTT+AGG + chr5_4:44664510-44664529 None:intergenic 45.0%
TAAGCATGTGGCGGTGATTA+TGG - chr5_4:44664509-44664528 Msa0853150:CDS 45.0%
CCTTCTCAACGACTTTACAC+CGG + chr5_4:44664592-44664611 None:intergenic 45.0%
!! TGGTGTTACTGGTGATATGC+AGG - chr5_4:44664783-44664802 Msa0853150:CDS 45.0%
TGTTACTGGTGATATGCAGG+TGG - chr5_4:44664786-44664805 Msa0853150:CDS 45.0%
!! AACCAACGTGAGTTGGTTCT+GGG + chr5_4:44666301-44666320 None:intergenic 45.0%
!! TAACCAACGTGAGTTGGTTC+TGG + chr5_4:44666302-44666321 None:intergenic 45.0%
! TGTGAGTTGGGTCTAGCATA+AGG + chr5_4:44667182-44667201 None:intergenic 45.0%
ATGCTAGACCCAACTCACAT+TGG - chr5_4:44667183-44667202 Msa0853150:intron 45.0%
! TAGTGCTGAGGAGAGTACAA+AGG - chr5_4:44667476-44667495 Msa0853150:intron 45.0%
! TGGCTACACTTTTGCATGCT+TGG + chr5_4:44667560-44667579 None:intergenic 45.0%
! GTAGCCAAGAAAGTGCAAGA+TGG - chr5_4:44667573-44667592 Msa0853150:intron 45.0%
ACTAACCCTAAGTTCTCCAC+TGG + chr5_4:44667694-44667713 None:intergenic 45.0%
!!! TTATTATTATTATTTTTGAA+TGG + chr5_4:44665315-44665334 None:intergenic 5.0%
!!! TTAATATATATATTTTTTAG+GGG - chr5_4:44665377-44665396 Msa0853150:intron 5.0%
!!! TCTTTTTTAAAAAAAAAAAT+TGG - chr5_4:44665716-44665735 Msa0853150:intron 5.0%
!! GCTTTTCAGGATCAGGTGGA+TGG - chr5_4:44664414-44664433 Msa0853150:CDS 50.0%
AGAAATAGAGCCATTGCCGG+AGG - chr5_4:44664464-44664483 Msa0853150:CDS 50.0%
CATGTGGCGGTGATTATGGA+CGG - chr5_4:44664513-44664532 Msa0853150:CDS 50.0%
ATGTGGCGGTGATTATGGAC+GGG - chr5_4:44664514-44664533 Msa0853150:CDS 50.0%
CGGTGATTATGGACGGGAAT+GGG - chr5_4:44664520-44664539 Msa0853150:CDS 50.0%
TGATTATGGACGGGAATGGG+AGG - chr5_4:44664523-44664542 Msa0853150:CDS 50.0%
CCGGTGTAAAGTCGTTGAGA+AGG - chr5_4:44664589-44664608 Msa0853150:CDS 50.0%
AGTCGTTGAGAAGGATGGTG+AGG - chr5_4:44664598-44664617 Msa0853150:CDS 50.0%
!! TTGGTTCTGGGTCTAGCAGA+AGG + chr5_4:44666289-44666308 None:intergenic 50.0%
TACGGACCAGTGGAGAACTT+AGG - chr5_4:44667685-44667704 Msa0853150:CDS 50.0%
ACGGACCAGTGGAGAACTTA+GGG - chr5_4:44667686-44667705 Msa0853150:CDS 50.0%
GAGTGATCCCCCGATGAACA+TGG + chr5_4:44664332-44664351 None:intergenic 55.0%
CAAACGCGTCACTATTGCCG+CGG - chr5_4:44664392-44664411 Msa0853150:CDS 55.0%
! CACTATTGCCGCGGCTTTTC+AGG - chr5_4:44664401-44664420 Msa0853150:CDS 55.0%
CACCTGATCCTGAAAAGCCG+CGG + chr5_4:44664412-44664431 None:intergenic 55.0%
ATTGCCGGAGGAACTGCAAG+CGG - chr5_4:44664476-44664495 Msa0853150:CDS 55.0%
GGAGCTGATGCCTAAGCATG+TGG - chr5_4:44664497-44664516 Msa0853150:CDS 55.0%
GCTGATGCCTAAGCATGTGG+CGG - chr5_4:44664500-44664519 Msa0853150:CDS 55.0%
GCGGTGATTATGGACGGGAA+TGG - chr5_4:44664519-44664538 Msa0853150:CDS 55.0%
TTATGGACGGGAATGGGAGG+TGG - chr5_4:44664526-44664545 Msa0853150:CDS 55.0%
TATGGACGGGAATGGGAGGT+GGG - chr5_4:44664527-44664546 Msa0853150:CDS 55.0%
ATGGGAGGTGGGCAAAGATG+AGG - chr5_4:44664538-44664557 Msa0853150:CDS 55.0%
TGGGAGGTGGGCAAAGATGA+GGG - chr5_4:44664539-44664558 Msa0853150:CDS 55.0%
GACCCAGAACCAACTCACGT+TGG - chr5_4:44666296-44666315 Msa0853150:intron 55.0%
CGCGGCAATAGTGACGCGTT+TGG + chr5_4:44664394-44664413 None:intergenic 60.0%
!! TGCCGCGGCTTTTCAGGATC+AGG - chr5_4:44664407-44664426 Msa0853150:CDS 60.0%
!! CGCGGCTTTTCAGGATCAGG+TGG - chr5_4:44664410-44664429 Msa0853150:CDS 60.0%
GGTGGATGGGGAAACTTCCG+TGG - chr5_4:44664428-44664447 Msa0853150:CDS 60.0%
GCTTGCAGTTCCTCCGGCAA+TGG + chr5_4:44664477-44664496 None:intergenic 60.0%
AGCTCCGCTTGCAGTTCCTC+CGG + chr5_4:44664483-44664502 None:intergenic 60.0%
GGGAGGTGGGCAAAGATGAG+GGG - chr5_4:44664540-44664559 Msa0853150:CDS 60.0%
GGAGGTGGGCAAAGATGAGG+GGG - chr5_4:44664541-44664560 Msa0853150:CDS 60.0%
GCTACATGACCCGCAGACGG+GGG + chr5_4:44664570-44664589 None:intergenic 65.0%
GGCTACATGACCCGCAGACG+GGG + chr5_4:44664571-44664590 None:intergenic 65.0%
CGGCTACATGACCCGCAGAC+GGG + chr5_4:44664572-44664591 None:intergenic 65.0%
CCGGCTACATGACCCGCAGA+CGG + chr5_4:44664573-44664592 None:intergenic 65.0%
CCGTCTGCGGGTCATGTAGC+CGG - chr5_4:44664570-44664589 Msa0853150:CDS 65.0%
GAGGGGGTTACCCCCGTCTG+CGG - chr5_4:44664557-44664576 Msa0853150:CDS 70.0%
AGGGGGTTACCCCCGTCTGC+GGG - chr5_4:44664558-44664577 Msa0853150:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 44664252 44667980 44664252 ID=Msa0853150;Name=Msa0853150
chr5_4 mRNA 44664252 44667980 44664252 ID=Msa0853150-mRNA-1;Parent=Msa0853150;Name=Msa0853150-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0.5|1|1|1|2|129|270
chr5_4 exon 44664252 44664825 44664252 ID=Msa0853150-mRNA-1:exon:14136;Parent=Msa0853150-mRNA-1
chr5_4 exon 44667613 44667980 44667613 ID=Msa0853150-mRNA-1:exon:14135;Parent=Msa0853150-mRNA-1
chr5_4 CDS 44667613 44667980 44667613 ID=Msa0853150-mRNA-1:cds;Parent=Msa0853150-mRNA-1
chr5_4 CDS 44664381 44664825 44664381 ID=Msa0853150-mRNA-1:cds;Parent=Msa0853150-mRNA-1
chr5_4 three_prime_UTR 44664252 44664380 44664252 ID=Msa0853150-mRNA-1:three_prime_utr;Parent=Msa0853150-mRNA-1
Gene Sequence

>Msa0853150

ATGTTTTCGTTAAGACTTCCCATGCCACTAGATAAAACTCTTATAACTTCTCCACCAAAGACAACTACTACTACTAACCATGTTCATCGGGGGATCACTCAGATACAAACTCATTCTCGATATTCTTCAAGGTTTGTTACCAAACGCGTCACTATTGCCGCGGCTTTTCAGGATCAGGTGGATGGGGAAACTTCCGTGGACGAAGATTTTTCAGAAATAGAGCCATTGCCGGAGGAACTGCAAGCGGAGCTGATGCCTAAGCATGTGGCGGTGATTATGGACGGGAATGGGAGGTGGGCAAAGATGAGGGGGTTACCCCCGTCTGCGGGTCATGTAGCCGGTGTAAAGTCGTTGAGAAGGATGGTGAGGGATGGAATTCAAATATCTGTGATTGGAGATACATCAAAGCTCCCCAAGTCATTGAAAAGTATGATAGCTAGTGCTGAGGAGAGTACAAAGGATAATACCAAATTCCATCTTATTTTGGCAGTAAGCTATAGTGGAAAATACGATTTAGTCCAAGCATGCAAAAGTGTAGCCAAGAAAGTGCAAGATGGCATTATTCATTTGGAAGACATAAATGAAAATATTATTGAAAAGGAATTAGAAACTAATTGTACAGAATTTCCTTACCCGGATTTACTAATACGGACCAGTGGAGAACTTAGGGTTAGTAATTTCTTGTTATGGCAATTGGCATATACAGAACTTTTCTTTAATAGAAAACTTTGGCCAGATTTTGGAAAGGATGAGTTTGTAGAAGCCTTAACTTCATTCCAAAATAGACAGAGACGTTTTGGTGGACGATATTAA

Protein sequence

>Msa0853150

MFSLRLPMPLDKTLITSPPKTTTTTNHVHRGITQIQTHSRYSSRFVTKRVTIAAAFQDQVDGETSVDEDFSEIEPLPEELQAELMPKHVAVIMDGNGRWAKMRGLPPSAGHVAGVKSLRRMVRDGIQISVIGDTSKLPKSLKSMIASAEESTKDNTKFHLILAVSYSGKYDLVQACKSVAKKVQDGIIHLEDINENIIEKELETNCTEFPYPDLLIRTSGELRVSNFLLWQLAYTELFFNRKLWPDFGKDEFVEALTSFQNRQRRFGGRY*