AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0649530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0649530 MtrunA17_Chr4g0041461 90.217 368 9 2 1 368 1 341 0.0 682
Msa0649530 MtrunA17_Chr2g0319981 68.219 365 86 4 1 365 1 335 2.84e-166 468
Msa0649530 MtrunA17_Chr1g0164721 30.547 311 158 11 103 366 72 371 5.34e-26 108
Msa0649530 MtrunA17_Chr5g0393371 37.500 112 66 3 103 211 10 120 5.14e-12 66.6
Msa0649530 MtrunA17_Chr1g0159491 48.387 62 32 0 110 171 17 78 1.01e-11 60.5
Msa0649530 MtrunA17_Chr1g0159511 42.667 75 40 1 103 174 10 84 2.47e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0649530 AT2G42750.1 63.859 368 101 6 1 364 1 340 2.68e-153 435
Msa0649530 AT5G23240.1 37.766 188 101 7 103 281 54 234 5.28e-29 117

Find 107 sgRNAs with CRISPR-Local

Find 406 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAATCCATAATTGTAATT+TGG 0.087736 4_3:-56205580 Msa0649530:three_prime_UTR
TTATTTCTACCAAAGCTTTA+AGG 0.152352 4_3:-56205329 Msa0649530:three_prime_UTR
AAAATATGAAGGAACCATTT+TGG 0.185321 4_3:+56211151 None:intergenic
TTCAAGGATATTACCCAAAA+TGG 0.190414 4_3:-56211165 Msa0649530:CDS
ACTATAATTGGTGACTTTAA+TGG 0.191913 4_3:-56211528 Msa0649530:exon
CAGGTTGCTCTAATGCTTTC+AGG 0.193170 4_3:-56207174 Msa0649530:CDS
TGAAGACTATTATGCAGTTT+TGG 0.211869 4_3:-56211294 Msa0649530:CDS
CGGAAGATTAATATTTATAA+TGG 0.211991 4_3:+56205274 None:intergenic
GATATGTTATAGGGAAAATA+AGG 0.231600 4_3:+56205673 None:intergenic
ATTTACCCAAATTACAATTA+TGG 0.233405 4_3:+56205574 None:intergenic
ACAATCCATAATTGTAATTT+GGG 0.267467 4_3:-56205579 Msa0649530:three_prime_UTR
ATAGCCGTTTGAATTAATTC+AGG 0.289083 4_3:+56207909 None:intergenic
ATTCAATGACATGCTATATA+TGG 0.294688 4_3:+56205624 None:intergenic
GAAAAGACAGTTAAAATTCT+TGG 0.297744 4_3:-56207010 Msa0649530:intron
CTGCAGCTGCTGCTAGAAAA+TGG 0.315567 4_3:-56205781 Msa0649530:CDS
GACATCAATCAATCCTTTCA+TGG 0.320575 4_3:-56208951 Msa0649530:CDS
TATTTCTACCAAAGCTTTAA+GGG 0.328000 4_3:-56205328 Msa0649530:three_prime_UTR
TACCAAAGCTTTAAGGGATA+AGG 0.328130 4_3:-56205322 Msa0649530:three_prime_UTR
ATCTGCTCCGCTGTTGCATC+TGG 0.329067 4_3:+56209214 None:intergenic
AGTTGCAAACGAAGAGGTTT+TGG 0.340245 4_3:-56211374 Msa0649530:CDS
GGACAGAGAGGATATGTTAT+AGG 0.342543 4_3:+56205663 None:intergenic
ATGATAAAACAAATTCATAC+TGG 0.346560 4_3:-56206073 Msa0649530:CDS
GCCAGAGTATACAATCAGTT+TGG 0.347992 4_3:-56207936 Msa0649530:CDS
TTACATTGACTCTTTCTATA+CGG 0.355741 4_3:+56207505 None:intergenic
ATCCTTATCCCTTAAAGCTT+TGG 0.361318 4_3:+56205320 None:intergenic
GTCCAATGAATGCAGTCAAC+AGG 0.364201 4_3:+56207567 None:intergenic
TCATAAACCCTGCGCTGAAC+TGG 0.373813 4_3:+56208995 None:intergenic
GGGATACATGTGTATATGTT+AGG 0.390211 4_3:-56211120 Msa0649530:CDS
TCAGGAATGGGATCAGCATT+AGG 0.391033 4_3:-56207156 Msa0649530:CDS
CCAAGAGACTACGAAAATTC+AGG 0.392251 4_3:-56206032 Msa0649530:intron
GGATCGTTGCCACTCAAATC+CGG 0.392784 4_3:+56209154 None:intergenic
TAAGCATATCTTGAAATCAT+TGG 0.398575 4_3:-56205251 None:intergenic
GCCCTGTTGACTGCATTCAT+TGG 0.406145 4_3:-56207569 Msa0649530:CDS
GCTCTAATGCTTTCAGGAAT+GGG 0.406320 4_3:-56207168 Msa0649530:CDS
AGGGTTTATGATGATATTCA+TGG 0.407166 4_3:-56208983 Msa0649530:CDS
GACAGAGAGGATATGTTATA+GGG 0.412780 4_3:+56205664 None:intergenic
AATGTTGCCTGTGATGTGTT+TGG 0.418176 4_3:-56207981 Msa0649530:CDS
ACAAATTCAGCGATGGGTTG+TGG 0.422577 4_3:+56211465 None:intergenic
GGTGCAGAAATTTGTGGTCT+CGG 0.423746 4_3:+56209132 None:intergenic
AAACCTCTTCGTTTGCAACT+TGG 0.425366 4_3:+56211377 None:intergenic
TCTGGAAGTTTGACTGTGGA+AGG 0.433523 4_3:+56205725 None:intergenic
TTTAGAGCTTCTGTGTATAG+TGG 0.435652 4_3:+56211491 None:intergenic
TTCAAACGGCTATTGAAAGT+TGG 0.439837 4_3:-56207899 Msa0649530:intron
TGCTCTAATGCTTTCAGGAA+TGG 0.444362 4_3:-56207169 Msa0649530:CDS
CCAGAGTATACAATCAGTTT+GGG 0.448971 4_3:-56207935 Msa0649530:CDS
TTTGGAATTGAAGAAGACTT+TGG 0.450046 4_3:-56207963 Msa0649530:CDS
TTGGTGGAAGAGGTTTCCTC+TGG 0.451754 4_3:+56205707 None:intergenic
AGTAAAAGTTGCTACTGATC+AGG 0.453197 4_3:-56211348 Msa0649530:CDS
CCACTAGTCCTTGGTGGAAG+AGG 0.467756 4_3:+56205697 None:intergenic
AATGAAGGTGCAGAAATTTG+TGG 0.484237 4_3:+56209126 None:intergenic
CTCATAGACTTCATTAATGA+AGG 0.495012 4_3:+56209111 None:intergenic
GTGCAGAAATTTGTGGTCTC+GGG 0.497638 4_3:+56209133 None:intergenic
TAGCCGTTTGAATTAATTCA+GGG 0.500760 4_3:+56207910 None:intergenic
TTCAGCTCCAACACTGTCAC+TGG 0.500793 4_3:+56211313 None:intergenic
GATCGTTGCCACTCAAATCC+GGG 0.515416 4_3:+56209155 None:intergenic
AAATAAGGGCCACTAGTCCT+TGG 0.521692 4_3:+56205688 None:intergenic
TCAGTGATCCAGTTCAGCGC+AGG 0.523230 4_3:-56209003 Msa0649530:CDS
TATGGATGAATTAATTACAT+TGG 0.523638 4_3:+56205642 None:intergenic
GTATATACAAGGGTAAATAG+AGG 0.527510 4_3:-56205525 Msa0649530:three_prime_UTR
ATGATTTCAAGATATGCTTA+CGG 0.529508 4_3:+56205254 None:intergenic
TCATACTGGGACAATCTTCG+TGG 0.534458 4_3:-56206059 Msa0649530:CDS
GATTTATAGTAGTATATACA+AGG 0.538744 4_3:-56205536 Msa0649530:three_prime_UTR
CTTGGTGTTGCAAATCTCCA+TGG 0.539226 4_3:+56211395 None:intergenic
CCCAGTCCCAGAAAATATGA+AGG 0.542161 4_3:+56211140 None:intergenic
GAACCCTGAATTAATTCAAA+CGG 0.544125 4_3:-56207913 Msa0649530:CDS
TCGACGAAAACATGATCCTT+CGG 0.546745 4_3:+56208917 None:intergenic
CTTCATTAATGAAGTCTATG+AGG 0.547350 4_3:-56209110 Msa0649530:intron
TAAGGGCCACTAGTCCTTGG+TGG 0.552794 4_3:+56205691 None:intergenic
ATATGTTATAGGGAAAATAA+GGG 0.555317 4_3:+56205674 None:intergenic
TTCAATTCCAAACACATCAC+AGG 0.555793 4_3:+56207974 None:intergenic
TACGACACAAATTCAGCGAT+GGG 0.557619 4_3:+56211459 None:intergenic
TTTGGTAGAAATAAATGAGT+AGG 0.560388 4_3:+56205338 None:intergenic
CAGTGATCCAGTTCAGCGCA+GGG 0.564590 4_3:-56209002 Msa0649530:CDS
CCCAAACTGATTGTATACTC+TGG 0.564770 4_3:+56207935 None:intergenic
CATGGACGATTCTAGTCCGA+AGG 0.574240 4_3:-56208933 Msa0649530:CDS
CTACGACACAAATTCAGCGA+TGG 0.577654 4_3:+56211458 None:intergenic
GAAAATGGAGGGAATACTCA+AGG 0.578572 4_3:-56205766 Msa0649530:CDS
TGATAAAACAAATTCATACT+GGG 0.578815 4_3:-56206072 Msa0649530:CDS
GTCGATGAATTCAGCTGCAT+AGG 0.581217 4_3:-56208899 Msa0649530:intron
AAACACATCACAGGCAACAT+TGG 0.584006 4_3:+56207983 None:intergenic
CCTCTTCCACCAAGGACTAG+TGG 0.584975 4_3:-56205697 Msa0649530:exon
GGACTAGAATCGTCCATGAA+AGG 0.589389 4_3:+56208938 None:intergenic
ATGGAGGGAATACTCAAGGA+AGG 0.597715 4_3:-56205762 Msa0649530:CDS
TCGAGAATGATGAAGCAGAA+AGG 0.598097 4_3:-56206098 Msa0649530:CDS
ACACCAAGTTGCAAACGAAG+AGG 0.606484 4_3:-56211380 Msa0649530:CDS
AACGGCAGGCAAATACCCGA+TGG 0.610608 4_3:-56207035 Msa0649530:intron
ATTTGTGTCGTAGAAGCTCA+TGG 0.614378 4_3:-56211448 Msa0649530:CDS
AGCTGCTGCTAGAAAATGGA+GGG 0.615130 4_3:-56205777 Msa0649530:CDS
ATTAATTACATTGGACAGAG+AGG 0.619569 4_3:+56205651 None:intergenic
TCCAATGAATGCAGTCAACA+GGG 0.619810 4_3:+56207568 None:intergenic
CCAGCTTCCAGATGCAACAG+CGG 0.621454 4_3:-56209221 Msa0649530:intron
AAAGTTACACATTAAGATCG+AGG 0.626488 4_3:+56205479 None:intergenic
TTCCTCTGGAAGTTTGACTG+TGG 0.633663 4_3:+56205721 None:intergenic
TTGTATGAAAACATGCCACC+CGG 0.634799 4_3:-56209173 Msa0649530:CDS
AGGGAATACTCAAGGAAGGG+TGG 0.636023 4_3:-56205758 Msa0649530:CDS
ACATGCCACCCGGATTTGAG+TGG 0.636275 4_3:-56209163 Msa0649530:CDS
AAGTTACACATTAAGATCGA+GGG 0.644663 4_3:+56205480 None:intergenic
CAGCTGCTGCTAGAAAATGG+AGG 0.647077 4_3:-56205778 Msa0649530:CDS
ACGGCAGGCAAATACCCGAT+GGG 0.649180 4_3:-56207034 Msa0649530:intron
TTCCACAGTCAAACTTCCAG+AGG 0.649396 4_3:-56205723 Msa0649530:CDS
TGGAGGGAATACTCAAGGAA+GGG 0.660724 4_3:-56205761 Msa0649530:CDS
AACAGCGGAGCAGATCAAGA+AGG 0.661686 4_3:-56209206 Msa0649530:CDS
ACATGTGTATATGTTAGGAG+AGG 0.662987 4_3:-56211115 Msa0649530:intron
GTGTCATGCAGGAACAAGCG+AGG 0.686221 4_3:-56206121 Msa0649530:intron
AGAGGAAACCTCTTCCACCA+AGG 0.699546 4_3:-56205705 Msa0649530:CDS
ATTTATAGTAGTATATACAA+GGG 0.703285 4_3:-56205535 Msa0649530:three_prime_UTR
CGTTGCCACTCAAATCCGGG+TGG 0.724566 4_3:+56209158 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTTAGAATTTTTG+AGG + chr4_3:56205264-56205283 None:intergenic 10.0%
!!! TGAATTAAAAAAAAGTTTTT+TGG + chr4_3:56206101-56206120 None:intergenic 10.0%
!! TTAATGAAAAATAAAAATTC+TGG - chr4_3:56206570-56206589 Msa0649530:intron 10.0%
!! GAAAAATAATTGAAAAAATA+CGG + chr4_3:56207082-56207101 None:intergenic 10.0%
!! AAATGAAAATATAAAAATGG+AGG + chr4_3:56205311-56205330 None:intergenic 15.0%
!!! AATCTTCTTTTTACTATAAT+TGG - chr4_3:56205353-56205372 Msa0649530:three_prime_UTR 15.0%
!!! TTTTTAGTAAACAATCATTT+TGG - chr4_3:56205842-56205861 Msa0649530:intron 15.0%
!!! GAAAAGAGTTATTTTTTTTA+GGG + chr4_3:56207443-56207462 None:intergenic 15.0%
!!! TGAAAAGAGTTATTTTTTTT+AGG + chr4_3:56207442-56207461 None:intergenic 15.0%
!!! TAAAAAAAATAACTCTTTTC+AGG - chr4_3:56206213-56206232 Msa0649530:intron 15.0%
!! TCTGAAAAAATAAAATAATC+TGG - chr4_3:56206470-56206489 Msa0649530:intron 15.0%
!!! ATTTTCATTAGTATTTTTTC+CGG - chr4_3:56206760-56206779 Msa0649530:intron 15.0%
!!! AATACTAATGAAAATTTTTC+CGG + chr4_3:56206782-56206801 None:intergenic 15.0%
!!! ATTTTCATTAGTATTTTTTC+CGG - chr4_3:56206760-56206779 Msa0649530:intron 15.0%
!!! ATTTTTCTGTATTTATAAAC+CGG + chr4_3:56206834-56206853 None:intergenic 15.0%
!!! ATTTTCATTAGTATTTTTTC+CGG + chr4_3:56206760-56206779 None:intergenic 15.0%
!! TTAAAAATTTCGAAAATATC+TGG + chr4_3:56206953-56206972 None:intergenic 15.0%
!! AAAAAAATTGAAAACAATTC+TGG + chr4_3:56207168-56207187 None:intergenic 15.0%
!!! TAAAAAAAATAACTCTTTTC+AGG + chr4_3:56206213-56206232 None:intergenic 15.0%
!!! TGAAAAGAGTTATTTTTTTT+AGG - chr4_3:56207442-56207461 Msa0649530:intron 15.0%
!!! GAAAAGAGTTATTTTTTTTA+GGG - chr4_3:56207443-56207462 Msa0649530:intron 15.0%
!!! AAAAGAGTTATTTTTTTTAG+GGG - chr4_3:56207444-56207463 Msa0649530:intron 15.0%
!! AAGATTCACATAAAAAATTA+AGG + chr4_3:56207519-56207538 None:intergenic 15.0%
!!! GTTGTTTTGATTTTTTAAAT+AGG - chr4_3:56209056-56209075 Msa0649530:intron 15.0%
!!! TATTACTGATATGTTTTATT+TGG - chr4_3:56209107-56209126 Msa0649530:intron 15.0%
!! TTATATTGTTAAGGAAAAAA+TGG + chr4_3:56209929-56209948 None:intergenic 15.0%
!! AAGTTATTCTTATATTGTTA+AGG + chr4_3:56209938-56209957 None:intergenic 15.0%
!! CAAAATTATGAAAAATGTTA+TGG + chr4_3:56210232-56210251 None:intergenic 15.0%
!!! TACTAATTTTACATTAATGA+GGG - chr4_3:56210611-56210630 Msa0649530:intron 15.0%
!! ATAATTATCTACTAAAGAAA+GGG + chr4_3:56210692-56210711 None:intergenic 15.0%
!! TATTGTTAAAAGAAAAATCA+TGG + chr4_3:56210955-56210974 None:intergenic 15.0%
!! ATTTATAGTAGTATATACAA+GGG - chr4_3:56211358-56211377 Msa0649530:CDS 15.0%
!!! TATTTTTAGAATTTTTGAGG+TGG + chr4_3:56205261-56205280 None:intergenic 20.0%
!!! TGTGTTTTTATAGAATTTCA+AGG - chr4_3:56205712-56205731 Msa0649530:CDS 20.0%
!!! AATGTTTCTTTTAGTCAATT+TGG - chr4_3:56205981-56206000 Msa0649530:intron 20.0%
!!! TTTTATTAATTCTGTTGACT+GGG + chr4_3:56206290-56206309 None:intergenic 20.0%
!!! ATTTTATTAATTCTGTTGAC+TGG + chr4_3:56206291-56206310 None:intergenic 20.0%
!! TCTGAACAAAATAAAAATTC+TGG - chr4_3:56206526-56206545 Msa0649530:intron 20.0%
!!! TTTTCATTAGTATTTTTTCC+GGG - chr4_3:56206761-56206780 Msa0649530:intron 20.0%
!!! AATTTTCATTATGTGTATTC+CGG - chr4_3:56206812-56206831 Msa0649530:intron 20.0%
!! TATAAATACAGAAAAATTCC+CGG - chr4_3:56206837-56206856 Msa0649530:intron 20.0%
!!! TTTTCATTAGTATTTTTTCC+GGG + chr4_3:56206761-56206780 None:intergenic 20.0%
!!! ATTGAAAATTCTGGAAAATA+CGG + chr4_3:56206904-56206923 None:intergenic 20.0%
!! ATATCTGGAAAATTTGAAAA+CGG + chr4_3:56206938-56206957 None:intergenic 20.0%
!! ACGGAAAAATTTAAAAATTC+AGG + chr4_3:56207063-56207082 None:intergenic 20.0%
!! AAAATTCAAGATATCCAAAA+AGG + chr4_3:56207815-56207834 None:intergenic 20.0%
!! TATTATGCTTCAAAAATTTG+TGG - chr4_3:56207834-56207853 Msa0649530:intron 20.0%
!!! TTTTCTAACTTTTCTATTTC+AGG - chr4_3:56207864-56207883 Msa0649530:intron 20.0%
!! AACACAATTCTTAAAATACT+AGG - chr4_3:56208442-56208461 Msa0649530:intron 20.0%
!!! TTTTATGTGCTTAATTGATA+TGG - chr4_3:56208752-56208771 Msa0649530:intron 20.0%
!! ATTAACATCTAATCTAACAA+AGG + chr4_3:56208813-56208832 None:intergenic 20.0%
!! AACATATCAGTAATATAGAA+TGG + chr4_3:56209102-56209121 None:intergenic 20.0%
!! TTGAAGTTAAGAAATAATAG+TGG + chr4_3:56209153-56209172 None:intergenic 20.0%
!!! TAGTTAAACACTTAGTTTTT+AGG - chr4_3:56209212-56209231 Msa0649530:CDS 20.0%
!!! GAAATAAACTTTTATGACTT+TGG + chr4_3:56209416-56209435 None:intergenic 20.0%
!! GTTTAATGACTAAATTAATG+TGG + chr4_3:56209620-56209639 None:intergenic 20.0%
!! ATCTAACCATACTATAATAA+CGG - chr4_3:56209840-56209859 Msa0649530:intron 20.0%
!! GAGAAAAAATGATAATTTAG+GGG + chr4_3:56209976-56209995 None:intergenic 20.0%
!! GGAGAAAAAATGATAATTTA+GGG + chr4_3:56209977-56209996 None:intergenic 20.0%
!! AGGAGAAAAAATGATAATTT+AGG + chr4_3:56209978-56209997 None:intergenic 20.0%
!! GAATTCAAAATTAGTGTAAA+CGG - chr4_3:56210023-56210042 Msa0649530:intron 20.0%
!! AATGACATTACAAATATTCA+AGG + chr4_3:56210079-56210098 None:intergenic 20.0%
!! ATTGTCTTAAAGAATATTCT+TGG + chr4_3:56210504-56210523 None:intergenic 20.0%
!!! CTACTAATTTTACATTAATG+AGG - chr4_3:56210610-56210629 Msa0649530:intron 20.0%
!! CATAATTATCTACTAAAGAA+AGG + chr4_3:56210693-56210712 None:intergenic 20.0%
!! ATGATAAAACAAATTCATAC+TGG - chr4_3:56210820-56210839 Msa0649530:intron 20.0%
!! TGATAAAACAAATTCATACT+GGG - chr4_3:56210821-56210840 Msa0649530:intron 20.0%
!! GAATATGTAAATACAAAAGA+AGG - chr4_3:56210888-56210907 Msa0649530:intron 20.0%
!! ATCATTTCAAAACTATTTAG+TGG + chr4_3:56211049-56211068 None:intergenic 20.0%
!! ATATGTTATAGGGAAAATAA+GGG + chr4_3:56211222-56211241 None:intergenic 20.0%
!! TATGGATGAATTAATTACAT+TGG + chr4_3:56211254-56211273 None:intergenic 20.0%
!! AACAATCCATAATTGTAATT+TGG - chr4_3:56211313-56211332 Msa0649530:CDS 20.0%
!! ACAATCCATAATTGTAATTT+GGG - chr4_3:56211314-56211333 Msa0649530:CDS 20.0%
!! ATTTACCCAAATTACAATTA+TGG + chr4_3:56211322-56211341 None:intergenic 20.0%
!! GATTTATAGTAGTATATACA+AGG - chr4_3:56211357-56211376 Msa0649530:CDS 20.0%
!! AGAAAAATATTATCAGCTAA+AGG - chr4_3:56211484-56211503 Msa0649530:CDS 20.0%
!! CGGAAGATTAATATTTATAA+TGG + chr4_3:56211622-56211641 None:intergenic 20.0%
!! ACTATAATTGGTGACTTTAA+TGG - chr4_3:56205365-56205384 Msa0649530:three_prime_UTR 25.0%
!! AAATATGAAGGAACCATTTT+GGG + chr4_3:56205744-56205763 None:intergenic 25.0%
!! AAAATATGAAGGAACCATTT+TGG + chr4_3:56205745-56205764 None:intergenic 25.0%
! TTATTTACAAAAGAGACACT+TGG - chr4_3:56206013-56206032 Msa0649530:intron 25.0%
! TATTTACAAAAGAGACACTT+GGG - chr4_3:56206014-56206033 Msa0649530:intron 25.0%
!!! TTTTGGCTTAATTACACTTT+TGG - chr4_3:56206154-56206173 Msa0649530:intron 25.0%
! TACACATAATGAAAATTTCC+CGG + chr4_3:56206809-56206828 None:intergenic 25.0%
!! TTCTGGAAAATTGAAAATTC+TGG + chr4_3:56206913-56206932 None:intergenic 25.0%
! AAAATTTGAAAACGGAATTC+TGG + chr4_3:56206930-56206949 None:intergenic 25.0%
!! TTAAGGCTTAATTACACTTT+TGG + chr4_3:56207502-56207521 None:intergenic 25.0%
!!! TGAGTAATTTTTCAGAGAAT+AGG - chr4_3:56207544-56207563 Msa0649530:CDS 25.0%
! AATGTTGCCTTATATGTTAA+TGG - chr4_3:56208044-56208063 Msa0649530:intron 25.0%
!! TCTCCAAAAAAGTTTGATTT+AGG - chr4_3:56208126-56208145 Msa0649530:intron 25.0%
!!! TGTCCTAAATCAAACTTTTT+TGG + chr4_3:56208132-56208151 None:intergenic 25.0%
!! TTTATGTGTGTCCATTTTAT+AGG + chr4_3:56208391-56208410 None:intergenic 25.0%
! ATAAAATGGACACACATAAA+AGG - chr4_3:56208391-56208410 Msa0649530:intron 25.0%
! AAGACAATTGAATCAAAATG+TGG + chr4_3:56208599-56208618 None:intergenic 25.0%
! TTTCCTTAATTTAACTCCTT+TGG - chr4_3:56208617-56208636 Msa0649530:intron 25.0%
! TTACCAAAGGAGTTAAATTA+AGG + chr4_3:56208623-56208642 None:intergenic 25.0%
! TAATCTAACAAAGGTAATGA+AGG + chr4_3:56208804-56208823 None:intergenic 25.0%
!!! ATCTATTTTGAGTTTTTGCA+AGG - chr4_3:56208836-56208855 Msa0649530:intron 25.0%
! ATATCAGTAATATAGAATGG+TGG + chr4_3:56209099-56209118 None:intergenic 25.0%
!!! TTACATTGACTCTTTCTATA+CGG + chr4_3:56209391-56209410 None:intergenic 25.0%
! TTACAAATAGAGATCTTAAG+GGG + chr4_3:56209448-56209467 None:intergenic 25.0%
! CTTACAAATAGAGATCTTAA+GGG + chr4_3:56209449-56209468 None:intergenic 25.0%
! TCTTACAAATAGAGATCTTA+AGG + chr4_3:56209450-56209469 None:intergenic 25.0%
! CATACTAGAAAATTTCTTGA+TGG - chr4_3:56209565-56209584 Msa0649530:intron 25.0%
! GAAAAGACAGTTAAAATTCT+TGG - chr4_3:56209883-56209902 Msa0649530:intron 25.0%
!!! ATTTTTTCTCCTGTTAATCT+TGG - chr4_3:56209986-56210005 Msa0649530:intron 25.0%
!!! TTTTTTCTCCTGTTAATCTT+GGG - chr4_3:56209987-56210006 Msa0649530:intron 25.0%
! AACATATCTGTAAGCAATTT+AGG + chr4_3:56210346-56210365 None:intergenic 25.0%
!! TTTTAACAATATGCTTCAGT+AGG - chr4_3:56210964-56210983 Msa0649530:intron 25.0%
! TTCAAAACTATTTAGTGGAA+TGG + chr4_3:56211044-56211063 None:intergenic 25.0%
!! AAATGATGATAATTTTGCAG+AGG - chr4_3:56211062-56211081 Msa0649530:intron 25.0%
! GATATGTTATAGGGAAAATA+AGG + chr4_3:56211223-56211242 None:intergenic 25.0%
! ATTCAATGACATGCTATATA+TGG + chr4_3:56211272-56211291 None:intergenic 25.0%
! TTTGGTAGAAATAAATGAGT+AGG + chr4_3:56211558-56211577 None:intergenic 25.0%
!!! TTATTTCTACCAAAGCTTTA+AGG - chr4_3:56211564-56211583 Msa0649530:five_prime_UTR 25.0%
!! TATTTCTACCAAAGCTTTAA+GGG - chr4_3:56211565-56211584 Msa0649530:five_prime_UTR 25.0%
! ATGATTTCAAGATATGCTTA+CGG + chr4_3:56211642-56211661 None:intergenic 25.0%
!!! TTTTAGAATTTTTGAGGTGG+AGG + chr4_3:56205258-56205277 None:intergenic 30.0%
!!! GAGGTTGATATTTTGATGAA+TGG + chr4_3:56205292-56205311 None:intergenic 30.0%
! TGAAGACTATTATGCAGTTT+TGG - chr4_3:56205599-56205618 Msa0649530:three_prime_UTR 30.0%
! GAAGACTATTATGCAGTTTT+GGG - chr4_3:56205600-56205619 Msa0649530:three_prime_UTR 30.0%
ACAGACGTAAAATAAGAGTT+TGG + chr4_3:56205643-56205662 None:intergenic 30.0%
TTCAAGGATATTACCCAAAA+TGG - chr4_3:56205728-56205747 Msa0649530:CDS 30.0%
! AATGGTTCCTTCATATTTTC+TGG - chr4_3:56205746-56205765 Msa0649530:CDS 30.0%
! ATGGTTCCTTCATATTTTCT+GGG - chr4_3:56205747-56205766 Msa0649530:CDS 30.0%
TTGACTAAAAGAAACATTCG+AGG + chr4_3:56205979-56205998 None:intergenic 30.0%
!!! ATTCGACGAGTTTTAGTTTA+AGG - chr4_3:56206048-56206067 Msa0649530:CDS 30.0%
TTAGTTTAAGGAGTTGAACA+AGG - chr4_3:56206060-56206079 Msa0649530:CDS 30.0%
TAGTTTAAGGAGTTGAACAA+GGG - chr4_3:56206061-56206080 Msa0649530:CDS 30.0%
!! TTCACTTTTGGTTGCAATTT+TGG - chr4_3:56206245-56206264 Msa0649530:intron 30.0%
TTAGTATATATGTCGAGCTT+AGG - chr4_3:56206707-56206726 Msa0649530:intron 30.0%
!! TTCACTTTTGGTTGCAATTT+TGG + chr4_3:56206245-56206264 None:intergenic 30.0%
CTCATAGACTTCATTAATGA+AGG + chr4_3:56207785-56207804 None:intergenic 30.0%
CTTCATTAATGAAGTCTATG+AGG - chr4_3:56207783-56207802 Msa0649530:intron 30.0%
AGGGTTTATGATGATATTCA+TGG - chr4_3:56207910-56207929 Msa0649530:CDS 30.0%
CTGAACACCATTAACATATA+AGG + chr4_3:56208054-56208073 None:intergenic 30.0%
TCAGTACCAAATATTACCAT+TGG - chr4_3:56208070-56208089 Msa0649530:intron 30.0%
CAGTACCAAATATTACCATT+GGG - chr4_3:56208071-56208090 Msa0649530:intron 30.0%
ACTCATGATTAGCAATGATT+GGG + chr4_3:56208304-56208323 None:intergenic 30.0%
! GTGTCCATTTTATAGGATTT+GGG + chr4_3:56208384-56208403 None:intergenic 30.0%
! TGTGTCCATTTTATAGGATT+TGG + chr4_3:56208385-56208404 None:intergenic 30.0%
TTGTTAGGGTAAATTACCAA+AGG + chr4_3:56208636-56208655 None:intergenic 30.0%
! TCGGAAATGCTTTTCAATAA+AGG + chr4_3:56208672-56208691 None:intergenic 30.0%
GTCAGCATTTATTATCTCTT+CGG + chr4_3:56208718-56208737 None:intergenic 30.0%
ATACTTCAATATCCTTGAAC+AGG - chr4_3:56208873-56208892 Msa0649530:intron 30.0%
! TTTGGAATTGAAGAAGACTT+TGG - chr4_3:56208930-56208949 Msa0649530:CDS 30.0%
GAACCCTGAATTAATTCAAA+CGG - chr4_3:56208980-56208999 Msa0649530:CDS 30.0%
TAGCCGTTTGAATTAATTCA+GGG + chr4_3:56208986-56209005 None:intergenic 30.0%
ATAGCCGTTTGAATTAATTC+AGG + chr4_3:56208987-56209006 None:intergenic 30.0%
!! AAGTTGGTATGTTTATGACT+AGG - chr4_3:56209010-56209029 Msa0649530:CDS 30.0%
AAATCAAAACAACGAATGCA+TGG + chr4_3:56209049-56209068 None:intergenic 30.0%
ATATGCAGTTATGCTTCATT+TGG - chr4_3:56209187-56209206 Msa0649530:CDS 30.0%
GTATAGAAAGAGTCAATGTA+AGG - chr4_3:56209390-56209409 Msa0649530:intron 30.0%
TACAAATAGAGATCTTAAGG+GGG + chr4_3:56209447-56209466 None:intergenic 30.0%
GTAGTTCTTATAACTAGAAG+AGG + chr4_3:56209680-56209699 None:intergenic 30.0%
! TTTAGTTCCTGAAAGATAGA+AGG - chr4_3:56210098-56210117 Msa0649530:intron 30.0%
TTAGTTCCTGAAAGATAGAA+GGG - chr4_3:56210099-56210118 Msa0649530:intron 30.0%
!! CAAGCATAAACGTATTTTGA+TGG - chr4_3:56210184-56210203 Msa0649530:intron 30.0%
CAACTAATCGTGGATAATAA+TGG + chr4_3:56210287-56210306 None:intergenic 30.0%
GTAAAACTTTCAACTAATCG+TGG + chr4_3:56210297-56210316 None:intergenic 30.0%
TCTCAACAAACATGAATTCT+AGG + chr4_3:56210321-56210340 None:intergenic 30.0%
CCATCTTAAAATTTGTGCTT+AGG + chr4_3:56210398-56210417 None:intergenic 30.0%
!! CCTAAGCACAAATTTTAAGA+TGG - chr4_3:56210395-56210414 Msa0649530:intron 30.0%
CTAACTAAACACCAAGATAT+GGG + chr4_3:56210466-56210485 None:intergenic 30.0%
!!! TTTTGAAGTTCTGAGTTCTT+AGG - chr4_3:56210550-56210569 Msa0649530:intron 30.0%
CTACTAAAGAAAGGGATAAT+AGG + chr4_3:56210684-56210703 None:intergenic 30.0%
TCATGGTTGATCAAGTATTA+TGG + chr4_3:56210938-56210957 None:intergenic 30.0%
CATGATTATTTAGCTGTTTG+TGG - chr4_3:56210987-56211006 Msa0649530:intron 30.0%
ATTAATTACATTGGACAGAG+AGG + chr4_3:56211245-56211264 None:intergenic 30.0%
GTATATACAAGGGTAAATAG+AGG - chr4_3:56211368-56211387 Msa0649530:CDS 30.0%
AAGTTACACATTAAGATCGA+GGG + chr4_3:56211416-56211435 None:intergenic 30.0%
AAAGTTACACATTAAGATCG+AGG + chr4_3:56211417-56211436 None:intergenic 30.0%
! TTTAGAGCTTCTGTGTATAG+TGG + chr4_3:56205405-56205424 None:intergenic 35.0%
AAAAAACTGCAACTAGTCCA+TGG - chr4_3:56205481-56205500 Msa0649530:three_prime_UTR 35.0%
AGTAAAAGTTGCTACTGATC+AGG - chr4_3:56205545-56205564 Msa0649530:three_prime_UTR 35.0%
GGGATACATGTGTATATGTT+AGG - chr4_3:56205773-56205792 Msa0649530:CDS 35.0%
ACATGTGTATATGTTAGGAG+AGG - chr4_3:56205778-56205797 Msa0649530:CDS 35.0%
CACGAACAAAAGACACATTT+AGG + chr4_3:56205929-56205948 None:intergenic 35.0%
GAGGACTAAACTAACTAACA+AGG + chr4_3:56205960-56205979 None:intergenic 35.0%
AGTTGAACAAGGGAATATCT+TGG - chr4_3:56206071-56206090 Msa0649530:CDS 35.0%
! TTGAGTGATTTTCTGAACTG+TGG - chr4_3:56206125-56206144 Msa0649530:intron 35.0%
! TGAGTGATTTTCTGAACTGT+GGG - chr4_3:56206126-56206145 Msa0649530:intron 35.0%
!! CTGAACTGTGGGTTAATTTT+TGG - chr4_3:56206137-56206156 Msa0649530:intron 35.0%
! TCGCAACTTTTGGATACTTA+GGG + chr4_3:56206182-56206201 None:intergenic 35.0%
! ATCGCAACTTTTGGATACTT+AGG + chr4_3:56206183-56206202 None:intergenic 35.0%
CAACCAAAAGTGAACTTAAG+GGG + chr4_3:56207417-56207436 None:intergenic 35.0%
GCAACCAAAAGTGAACTTAA+GGG + chr4_3:56207416-56207435 None:intergenic 35.0%
TGCAACCAAAAGTGAACTTA+AGG + chr4_3:56207415-56207434 None:intergenic 35.0%
TGCAACCAAAAGTGAACTTA+AGG - chr4_3:56207415-56207434 Msa0649530:intron 35.0%
GCAACCAAAAGTGAACTTAA+GGG - chr4_3:56207416-56207435 Msa0649530:intron 35.0%
CAACCAAAAGTGAACTTAAG+GGG - chr4_3:56207417-56207436 Msa0649530:intron 35.0%
! AATGAAGGTGCAGAAATTTG+TGG + chr4_3:56207770-56207789 None:intergenic 35.0%
CATTAATGAAGTCTATGAGG+TGG - chr4_3:56207786-56207805 Msa0649530:intron 35.0%
GACATCAATCAATCCTTTCA+TGG - chr4_3:56207942-56207961 Msa0649530:CDS 35.0%
ATCCAGTATAGTAGTTATGG+GGG + chr4_3:56208178-56208197 None:intergenic 35.0%
GATCCAGTATAGTAGTTATG+GGG + chr4_3:56208179-56208198 None:intergenic 35.0%
GGATCCAGTATAGTAGTTAT+GGG + chr4_3:56208180-56208199 None:intergenic 35.0%
AGCAAGTCCATTATTATGGA+CGG + chr4_3:56208232-56208251 None:intergenic 35.0%
AAGGAGCAAGTCCATTATTA+TGG + chr4_3:56208236-56208255 None:intergenic 35.0%
CACTCATGATTAGCAATGAT+TGG + chr4_3:56208305-56208324 None:intergenic 35.0%
AATCATGAGTGAATATCCTG+TGG - chr4_3:56208314-56208333 Msa0649530:intron 35.0%
ATCATGAGTGAATATCCTGT+GGG - chr4_3:56208315-56208334 Msa0649530:intron 35.0%
AAGGCCCAAATCCTATAAAA+TGG - chr4_3:56208377-56208396 Msa0649530:intron 35.0%
ACTAGGTTATCCTCCAATTA+AGG - chr4_3:56208459-56208478 Msa0649530:intron 35.0%
CTAGGTTATCCTCCAATTAA+GGG - chr4_3:56208460-56208479 Msa0649530:intron 35.0%
TCACTCATCTTGAACAGAAA+CGG - chr4_3:56208485-56208504 Msa0649530:intron 35.0%
!! GAAGTGTTGTCAGATTGTTA+GGG + chr4_3:56208650-56208669 None:intergenic 35.0%
! ATTTGACTGACTCATCGAAT+CGG + chr4_3:56208691-56208710 None:intergenic 35.0%
AAGGTAATGAAGGACTATCT+AGG + chr4_3:56208794-56208813 None:intergenic 35.0%
TTCAATTCCAAACACATCAC+AGG + chr4_3:56208922-56208941 None:intergenic 35.0%
CCAGAGTATACAATCAGTTT+GGG - chr4_3:56208958-56208977 Msa0649530:CDS 35.0%
TTCAAACGGCTATTGAAAGT+TGG - chr4_3:56208994-56209013 Msa0649530:CDS 35.0%
!!! CACTTAGTTTTTAGGACCTT+CGG - chr4_3:56209220-56209239 Msa0649530:CDS 35.0%
TTGTGAAGCAACTAAGCTAA+CGG - chr4_3:56209260-56209279 Msa0649530:intron 35.0%
ACAAATAGAGATCTTAAGGG+GGG + chr4_3:56209446-56209465 None:intergenic 35.0%
!!! TTTTTTCCCTTTCTGCTTGA+TGG - chr4_3:56209488-56209507 Msa0649530:intron 35.0%
! ATTAGGCGATGTTTTCAGAA+TGG - chr4_3:56209754-56209773 Msa0649530:intron 35.0%
GGTAATAGCTTAGAGATTAC+TGG - chr4_3:56209775-56209794 Msa0649530:intron 35.0%
GTATGGTTAGATAACATCAG+AGG + chr4_3:56209832-56209851 None:intergenic 35.0%
AACCATACTATAATAACGGC+AGG - chr4_3:56209844-56209863 Msa0649530:intron 35.0%
! TTAACTGTCTTTTCTCCCAT+CGG + chr4_3:56209877-56209896 None:intergenic 35.0%
AATCTTGGGAAAGGTCTTTA+TGG - chr4_3:56210001-56210020 Msa0649530:intron 35.0%
AAATTAGTGTAAACGGCCAT+TGG - chr4_3:56210030-56210049 Msa0649530:intron 35.0%
GATATACCCTTCTATCTTTC+AGG + chr4_3:56210108-56210127 None:intergenic 35.0%
CCTAACTAAACACCAAGATA+TGG + chr4_3:56210467-56210486 None:intergenic 35.0%
!! CCATATCTTGGTGTTTAGTT+AGG - chr4_3:56210464-56210483 Msa0649530:intron 35.0%
!! AAGTTCTGAGTTCTTAGGAT+TGG - chr4_3:56210555-56210574 Msa0649530:intron 35.0%
AACAATTATGAGTGTCATGC+AGG - chr4_3:56210761-56210780 Msa0649530:intron 35.0%
AGACTACGAAAATTCAGGTA+TGG - chr4_3:56210866-56210885 Msa0649530:intron 35.0%
TGTGGCAATTACTTGTGTTA+AGG - chr4_3:56211005-56211024 Msa0649530:intron 35.0%
! TGATGATAATTTTGCAGAGG+AGG - chr4_3:56211065-56211084 Msa0649530:intron 35.0%
GACAGAGAGGATATGTTATA+GGG + chr4_3:56211232-56211251 None:intergenic 35.0%
!! TACCAAAGCTTTAAGGGATA+AGG - chr4_3:56211571-56211590 Msa0649530:five_prime_UTR 35.0%
ATCCTTATCCCTTAAAGCTT+TGG + chr4_3:56211576-56211595 None:intergenic 35.0%
TACGACACAAATTCAGCGAT+GGG + chr4_3:56205437-56205456 None:intergenic 40.0%
ATTTGTGTCGTAGAAGCTCA+TGG - chr4_3:56205445-56205464 Msa0649530:three_prime_UTR 40.0%
AAACCTCTTCGTTTGCAACT+TGG + chr4_3:56205519-56205538 None:intergenic 40.0%
! AGTTGCAAACGAAGAGGTTT+TGG - chr4_3:56205519-56205538 Msa0649530:three_prime_UTR 40.0%
! TTTTCAACCAGTGACAGTGT+TGG - chr4_3:56205573-56205592 Msa0649530:three_prime_UTR 40.0%
!!! CTATTATGCAGTTTTGGGTC+TGG - chr4_3:56205605-56205624 Msa0649530:three_prime_UTR 40.0%
!!! TCCTTCATATTTTCTGGGAC+TGG - chr4_3:56205752-56205771 Msa0649530:CDS 40.0%
!!! CCTTCATATTTTCTGGGACT+GGG - chr4_3:56205753-56205772 Msa0649530:CDS 40.0%
! GCAACTTTTGGATACTTAGG+GGG + chr4_3:56206180-56206199 None:intergenic 40.0%
! CGCAACTTTTGGATACTTAG+GGG + chr4_3:56206181-56206200 None:intergenic 40.0%
GTATCCAAAAGTTGCGATTC+AGG - chr4_3:56206185-56206204 Msa0649530:intron 40.0%
! CTGTTGACTGGGTCAAAATT+GGG + chr4_3:56206279-56206298 None:intergenic 40.0%
! TCTGTTGACTGGGTCAAAAT+TGG + chr4_3:56206280-56206299 None:intergenic 40.0%
! ATCGCAACTTTTGGACACTT+AGG - chr4_3:56207473-56207492 Msa0649530:intron 40.0%
! TCGCAACTTTTGGACACTTA+GGG - chr4_3:56207474-56207493 Msa0649530:intron 40.0%
TCCAGCTAATATATCGTCTG+CGG + chr4_3:56207574-56207593 None:intergenic 40.0%
TTGTATGAAAACATGCCACC+CGG - chr4_3:56207720-56207739 Msa0649530:intron 40.0%
! CTATGAGGTGGTTTCCTTTT+TGG - chr4_3:56207798-56207817 Msa0649530:intron 40.0%
TCGACGAAAACATGATCCTT+CGG + chr4_3:56207979-56207998 None:intergenic 40.0%
GGACAACTGAGTAAGCATAT+AGG - chr4_3:56208147-56208166 Msa0649530:intron 40.0%
AGTATAGTAGTTATGGGGGA+TGG + chr4_3:56208174-56208193 None:intergenic 40.0%
ATCCCCCATAACTACTATAC+TGG - chr4_3:56208173-56208192 Msa0649530:intron 40.0%
GGGATCCAGTATAGTAGTTA+TGG + chr4_3:56208181-56208200 None:intergenic 40.0%
TAACTACTATACTGGATCCC+TGG - chr4_3:56208181-56208200 Msa0649530:intron 40.0%
AGAGTGACCGTCCATAATAA+TGG - chr4_3:56208222-56208241 Msa0649530:intron 40.0%
ATGATTGGGTGAGGTATGAA+GGG + chr4_3:56208290-56208309 None:intergenic 40.0%
AATGATTGGGTGAGGTATGA+AGG + chr4_3:56208291-56208310 None:intergenic 40.0%
TGATTAGCAATGATTGGGTG+AGG + chr4_3:56208299-56208318 None:intergenic 40.0%
TCATGAGTGAATATCCTGTG+GGG - chr4_3:56208316-56208335 Msa0649530:intron 40.0%
GGACACACATAAAAGGCTAA+AGG - chr4_3:56208398-56208417 Msa0649530:intron 40.0%
AGATGAGTGACACCCTTAAT+TGG + chr4_3:56208475-56208494 None:intergenic 40.0%
!! GGAAGTGTTGTCAGATTGTT+AGG + chr4_3:56208651-56208670 None:intergenic 40.0%
AAACACATCACAGGCAACAT+TGG + chr4_3:56208913-56208932 None:intergenic 40.0%
AATGTTGCCTGTGATGTGTT+TGG - chr4_3:56208912-56208931 Msa0649530:CDS 40.0%
GCCAGAGTATACAATCAGTT+TGG - chr4_3:56208957-56208976 Msa0649530:CDS 40.0%
CCCAAACTGATTGTATACTC+TGG + chr4_3:56208961-56208980 None:intergenic 40.0%
TCCAATGAATGCAGTCAACA+GGG + chr4_3:56209328-56209347 None:intergenic 40.0%
TAGTAGCCATCAAGCAGAAA+GGG + chr4_3:56209497-56209516 None:intergenic 40.0%
TTAGTAGCCATCAAGCAGAA+AGG + chr4_3:56209498-56209517 None:intergenic 40.0%
TGAGATTCTTAAATCCGAGC+AGG - chr4_3:56209700-56209719 Msa0649530:intron 40.0%
TGCTCTAATGCTTTCAGGAA+TGG - chr4_3:56209724-56209743 Msa0649530:intron 40.0%
GCTCTAATGCTTTCAGGAAT+GGG - chr4_3:56209725-56209744 Msa0649530:intron 40.0%
TGCCTGCCGTTATTATAGTA+TGG + chr4_3:56209849-56209868 None:intergenic 40.0%
! TAACTGTCTTTTCTCCCATC+GGG + chr4_3:56209876-56209895 None:intergenic 40.0%
TCTCCTGTTAATCTTGGGAA+AGG - chr4_3:56209992-56210011 Msa0649530:intron 40.0%
AGACCTTTCCCAAGATTAAC+AGG + chr4_3:56209998-56210017 None:intergenic 40.0%
ATGTCCGCTCTTGAGTATAA+CGG - chr4_3:56210421-56210440 Msa0649530:intron 40.0%
AAGTCCGTTATACTCAAGAG+CGG + chr4_3:56210428-56210447 None:intergenic 40.0%
AAGAAAGGGATAATAGGTCG+AGG + chr4_3:56210678-56210697 None:intergenic 40.0%
TCGAGAATGATGAAGCAGAA+AGG - chr4_3:56210795-56210814 Msa0649530:intron 40.0%
! CCTGAATTTTCGTAGTCTCT+TGG + chr4_3:56210864-56210883 None:intergenic 40.0%
CCAAGAGACTACGAAAATTC+AGG - chr4_3:56210861-56210880 Msa0649530:intron 40.0%
GAAAATGGAGGGAATACTCA+AGG - chr4_3:56211127-56211146 Msa0649530:CDS 40.0%
GGACAGAGAGGATATGTTAT+AGG + chr4_3:56211233-56211252 None:intergenic 40.0%
!! ACAAATTCAGCGATGGGTTG+TGG + chr4_3:56205431-56205450 None:intergenic 45.0%
CTACGACACAAATTCAGCGA+TGG + chr4_3:56205438-56205457 None:intergenic 45.0%
!! CTTGGTGTTGCAAATCTCCA+TGG + chr4_3:56205501-56205520 None:intergenic 45.0%
ACACCAAGTTGCAAACGAAG+AGG - chr4_3:56205513-56205532 Msa0649530:three_prime_UTR 45.0%
CCCAGTCCCAGAAAATATGA+AGG + chr4_3:56205756-56205775 None:intergenic 45.0%
! AGGCCCCTTAAGTTCACTTT+TGG - chr4_3:56206233-56206252 Msa0649530:intron 45.0%
ACTGGGTCAAAATTGGGCTA+GGG + chr4_3:56206273-56206292 None:intergenic 45.0%
!! AGCGTTGACGGGTCAAAATT+GGG - chr4_3:56207377-56207396 Msa0649530:intron 45.0%
! AGGCCCCTTAAGTTCACTTT+TGG + chr4_3:56206233-56206252 None:intergenic 45.0%
GTGTCCAAAAGTTGCGATTC+AGG + chr4_3:56207471-56207490 None:intergenic 45.0%
! CGCAACTTTTGGACACTTAG+GGG - chr4_3:56207475-56207494 Msa0649530:intron 45.0%
! GCAACTTTTGGACACTTAGG+GGG - chr4_3:56207476-56207495 Msa0649530:intron 45.0%
ACCGCAGACGATATATTAGC+TGG - chr4_3:56207570-56207589 Msa0649530:CDS 45.0%
GCATCTGGAAGCTGGTAAAA+AGG + chr4_3:56207667-56207686 None:intergenic 45.0%
GTGCAGAAATTTGTGGTCTC+GGG + chr4_3:56207763-56207782 None:intergenic 45.0%
GGTGCAGAAATTTGTGGTCT+CGG + chr4_3:56207764-56207783 None:intergenic 45.0%
GGACTAGAATCGTCCATGAA+AGG + chr4_3:56207958-56207977 None:intergenic 45.0%
GTCGATGAATTCAGCTGCAT+AGG - chr4_3:56207994-56208013 Msa0649530:CDS 45.0%
CCTGGCCCAATGGTAATATT+TGG + chr4_3:56208079-56208098 None:intergenic 45.0%
CCAAATATTACCATTGGGCC+AGG - chr4_3:56208076-56208095 Msa0649530:intron 45.0%
TACTATACTGGATCCCTGGA+TGG - chr4_3:56208185-56208204 Msa0649530:intron 45.0%
ACTATACTGGATCCCTGGAT+GGG - chr4_3:56208186-56208205 Msa0649530:intron 45.0%
ACTTGGTAAATCCCCATCCA+GGG + chr4_3:56208201-56208220 None:intergenic 45.0%
TACTTGGTAAATCCCCATCC+AGG + chr4_3:56208202-56208221 None:intergenic 45.0%
TATGGACGGTCACTCTTACT+TGG + chr4_3:56208218-56208237 None:intergenic 45.0%
TGAGTGACACCCTTAATTGG+AGG + chr4_3:56208472-56208491 None:intergenic 45.0%
CGTCTGAAAACACCAAGTCT+AGG + chr4_3:56208514-56208533 None:intergenic 45.0%
! CAGTTTTTGCAGCCTGTTCA+AGG + chr4_3:56208888-56208907 None:intergenic 45.0%
GTCCAATGAATGCAGTCAAC+AGG + chr4_3:56209329-56209348 None:intergenic 45.0%
TAGAGATCTTAAGGGGGGAA+AGG + chr4_3:56209441-56209460 None:intergenic 45.0%
AAGCATTAGAGCAACCTGCT+CGG + chr4_3:56209717-56209736 None:intergenic 45.0%
CAGGTTGCTCTAATGCTTTC+AGG - chr4_3:56209719-56209738 Msa0649530:intron 45.0%
TCAGGAATGGGATCAGCATT+AGG - chr4_3:56209737-56209756 Msa0649530:intron 45.0%
GACTTGAGAGTCCCATATCT+TGG - chr4_3:56210452-56210471 Msa0649530:intron 45.0%
TCATACTGGGACAATCTTCG+TGG - chr4_3:56210834-56210853 Msa0649530:intron 45.0%
AGCTGCTGCTAGAAAATGGA+GGG - chr4_3:56211116-56211135 Msa0649530:CDS 45.0%
ATGGAGGGAATACTCAAGGA+AGG - chr4_3:56211131-56211150 Msa0649530:CDS 45.0%
TGGAGGGAATACTCAAGGAA+GGG - chr4_3:56211132-56211151 Msa0649530:CDS 45.0%
TCTGGAAGTTTGACTGTGGA+AGG + chr4_3:56211171-56211190 None:intergenic 45.0%
TTCCACAGTCAAACTTCCAG+AGG - chr4_3:56211170-56211189 Msa0649530:CDS 45.0%
! TTCCTCTGGAAGTTTGACTG+TGG + chr4_3:56211175-56211194 None:intergenic 45.0%
AAATAAGGGCCACTAGTCCT+TGG + chr4_3:56211208-56211227 None:intergenic 45.0%
!! TAAAAATGAAAATATAAAAA+TGG + chr4_3:56205314-56205333 None:intergenic 5.0%
!!! TAATTGATATTTTTTTTTAA+GGG + chr4_3:56205808-56205827 None:intergenic 5.0%
!!! TTAATTGATATTTTTTTTTA+AGG + chr4_3:56205809-56205828 None:intergenic 5.0%
!! AAAAAAATATTATAAAATTC+TGG - chr4_3:56206364-56206383 Msa0649530:intron 5.0%
!! AAAAATAAATAAAAAAAATC+TGG - chr4_3:56206394-56206413 Msa0649530:intron 5.0%
!! TTGAAAAATTAATAAAAAAT+TGG + chr4_3:56206421-56206440 None:intergenic 5.0%
!! TAAAAAATAAATAAAAATTC+TGG + chr4_3:56207308-56207327 None:intergenic 5.0%
TTCAGCTCCAACACTGTCAC+TGG + chr4_3:56205583-56205602 None:intergenic 50.0%
! GGAGCCTGAATCGCAACTTT+TGG + chr4_3:56206192-56206211 None:intergenic 50.0%
! TGGGTCAAAATTGGGCTAGG+GGG + chr4_3:56206271-56206290 None:intergenic 50.0%
! CTGGGTCAAAATTGGGCTAG+GGG + chr4_3:56206272-56206291 None:intergenic 50.0%
GACTGGGTCAAAATTGGGCT+AGG + chr4_3:56206274-56206293 None:intergenic 50.0%
!! CAGCGTTGACGGGTCAAAAT+TGG - chr4_3:56207376-56207395 Msa0649530:intron 50.0%
! TGACGGGTCAAAATTGGGCT+AGG - chr4_3:56207382-56207401 Msa0649530:intron 50.0%
GACGGGTCAAAATTGGGCTA+GGG - chr4_3:56207383-56207402 Msa0649530:intron 50.0%
! ACGGGTCAAAATTGGGCTAG+GGG - chr4_3:56207384-56207403 Msa0649530:intron 50.0%
! GGGACCTGAATCGCAACTTT+TGG - chr4_3:56207464-56207483 Msa0649530:intron 50.0%
AACAGCGGAGCAGATCAAGA+AGG - chr4_3:56207687-56207706 Msa0649530:intron 50.0%
GATCGTTGCCACTCAAATCC+GGG + chr4_3:56207741-56207760 None:intergenic 50.0%
GGATCGTTGCCACTCAAATC+CGG + chr4_3:56207742-56207761 None:intergenic 50.0%
TCATAAACCCTGCGCTGAAC+TGG + chr4_3:56207901-56207920 None:intergenic 50.0%
CATGGACGATTCTAGTCCGA+AGG - chr4_3:56207960-56207979 Msa0649530:CDS 50.0%
CTATACTGGATCCCTGGATG+GGG - chr4_3:56208187-56208206 Msa0649530:intron 50.0%
CAGAAACGGTGACCTAGACT+TGG - chr4_3:56208499-56208518 Msa0649530:intron 50.0%
! GCCCTGTTGACTGCATTCAT+TGG - chr4_3:56209324-56209343 Msa0649530:intron 50.0%
CGCAGTCATTCAAGAGCCAA+TGG + chr4_3:56210049-56210068 None:intergenic 50.0%
AACCCGCTTGAACACAAACG+CGG - chr4_3:56210581-56210600 Msa0649530:intron 50.0%
TACCGCGTTTGTGTTCAAGC+GGG + chr4_3:56210586-56210605 None:intergenic 50.0%
CTACCGCGTTTGTGTTCAAG+CGG + chr4_3:56210587-56210606 None:intergenic 50.0%
CTTGAACACAAACGCGGTAG+TGG - chr4_3:56210587-56210606 Msa0649530:intron 50.0%
CTGCAGCTGCTGCTAGAAAA+TGG - chr4_3:56211112-56211131 Msa0649530:intron 50.0%
CAGCTGCTGCTAGAAAATGG+AGG - chr4_3:56211115-56211134 Msa0649530:intron 50.0%
AGGGAATACTCAAGGAAGGG+TGG - chr4_3:56211135-56211154 Msa0649530:CDS 50.0%
TTGGTGGAAGAGGTTTCCTC+TGG + chr4_3:56211189-56211208 None:intergenic 50.0%
AGAGGAAACCTCTTCCACCA+AGG - chr4_3:56211188-56211207 Msa0649530:intron 50.0%
! TGCGTCCATGTCAGCGTTGA+CGG - chr4_3:56207365-56207384 Msa0649530:intron 55.0%
TTGACCCGTCAACGCTGACA+TGG + chr4_3:56207373-56207392 None:intergenic 55.0%
! CGGGTCAAAATTGGGCTAGG+GGG - chr4_3:56207385-56207404 Msa0649530:intron 55.0%
CCAGCTTCCAGATGCAACAG+CGG - chr4_3:56207672-56207691 Msa0649530:intron 55.0%
ATCTGCTCCGCTGTTGCATC+TGG + chr4_3:56207682-56207701 None:intergenic 55.0%
ACATGCCACCCGGATTTGAG+TGG - chr4_3:56207730-56207749 Msa0649530:intron 55.0%
TCAGTGATCCAGTTCAGCGC+AGG - chr4_3:56207890-56207909 Msa0649530:intron 55.0%
CAGTGATCCAGTTCAGCGCA+GGG - chr4_3:56207891-56207910 Msa0649530:intron 55.0%
TGGAATTGAGCCTGGCCCAA+TGG + chr4_3:56208089-56208108 None:intergenic 55.0%
TGGGCCAGGCTCAATTCCAT+CGG - chr4_3:56208090-56208109 Msa0649530:intron 55.0%
CAGGCTCAATTCCATCGGGA+GGG - chr4_3:56208095-56208114 Msa0649530:intron 55.0%
AGGCTCAATTCCATCGGGAG+GGG - chr4_3:56208096-56208115 Msa0649530:intron 55.0%
AGACAACTTACCCCTCCCGA+TGG + chr4_3:56208109-56208128 None:intergenic 55.0%
GCTCCTTCCAGTTCCACACA+TGG - chr4_3:56208249-56208268 Msa0649530:intron 55.0%
ACGCCATGTGTGGAACTGGA+AGG + chr4_3:56208255-56208274 None:intergenic 55.0%
TGTCACGCCATGTGTGGAAC+TGG + chr4_3:56208259-56208278 None:intergenic 55.0%
GGGACCAAGCACCCAAATCA+GGG - chr4_3:56208336-56208355 Msa0649530:intron 55.0%
ACCAAGCACCCAAATCAGGG+TGG - chr4_3:56208339-56208358 Msa0649530:intron 55.0%
CCAAGCACCCAAATCAGGGT+GGG - chr4_3:56208340-56208359 Msa0649530:intron 55.0%
TTGGGCCTTCTCCTTTCGTC+AGG + chr4_3:56208366-56208385 None:intergenic 55.0%
AACGGCAGGCAAATACCCGA+TGG - chr4_3:56209858-56209877 Msa0649530:intron 55.0%
ACGGCAGGCAAATACCCGAT+GGG - chr4_3:56209859-56209878 Msa0649530:intron 55.0%
GCGTTTGTGTTCAAGCGGGT+TGG + chr4_3:56210582-56210601 None:intergenic 55.0%
GTGTCATGCAGGAACAAGCG+AGG - chr4_3:56210772-56210791 Msa0649530:intron 55.0%
CCACTAGTCCTTGGTGGAAG+AGG + chr4_3:56211199-56211218 None:intergenic 55.0%
CCTCTTCCACCAAGGACTAG+TGG - chr4_3:56211196-56211215 Msa0649530:intron 55.0%
TAAGGGCCACTAGTCCTTGG+TGG + chr4_3:56211205-56211224 None:intergenic 55.0%
!! GCGTCCATGTCAGCGTTGAC+GGG - chr4_3:56207366-56207385 Msa0649530:intron 60.0%
CCGCTGTTGCATCTGGAAGC+TGG + chr4_3:56207675-56207694 None:intergenic 60.0%
CGTTGCCACTCAAATCCGGG+TGG + chr4_3:56207738-56207757 None:intergenic 60.0%
GGGCCAGGCTCAATTCCATC+GGG - chr4_3:56208091-56208110 Msa0649530:intron 60.0%
CCTCCCGATGGAATTGAGCC+TGG + chr4_3:56208097-56208116 None:intergenic 60.0%
CCAGGCTCAATTCCATCGGG+AGG - chr4_3:56208094-56208113 Msa0649530:intron 60.0%
TTTGGGTGCTTGGTCCCCAC+AGG + chr4_3:56208333-56208352 None:intergenic 60.0%
GGGGACCAAGCACCCAAATC+AGG - chr4_3:56208335-56208354 Msa0649530:intron 60.0%
!! CCCACCCTGATTTGGGTGCT+TGG + chr4_3:56208343-56208362 None:intergenic 60.0%
CGTCAGGCCCACCCTGATTT+GGG + chr4_3:56208350-56208369 None:intergenic 60.0%
TCGTCAGGCCCACCCTGATT+TGG + chr4_3:56208351-56208370 None:intergenic 60.0%
ATCAGGGTGGGCCTGACGAA+AGG - chr4_3:56208352-56208371 Msa0649530:intron 60.0%
GTGGGCCTGACGAAAGGAGA+AGG - chr4_3:56208358-56208377 Msa0649530:intron 60.0%
GACGCGTGTCACGCCATGTG+TGG + chr4_3:56208265-56208284 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 56205253 56211662 56205253 ID=Msa0649530;Name=Msa0649530
chr4_3 mRNA 56205253 56211662 56205253 ID=Msa0649530-mRNA-1;Parent=Msa0649530;Name=Msa0649530-mRNA-1;_AED=0.13;_eAED=0.13;_QI=131|0.88|0.9|1|1|1|10|447|368
chr4_3 exon 56205253 56205833 56205253 ID=Msa0649530-mRNA-1:exon:14579;Parent=Msa0649530-mRNA-1
chr4_3 exon 56206033 56206132 56206033 ID=Msa0649530-mRNA-1:exon:14578;Parent=Msa0649530-mRNA-1
chr4_3 exon 56207011 56207049 56207011 ID=Msa0649530-mRNA-1:exon:14577;Parent=Msa0649530-mRNA-1
chr4_3 exon 56207140 56207193 56207140 ID=Msa0649530-mRNA-1:exon:14576;Parent=Msa0649530-mRNA-1
chr4_3 exon 56207509 56207590 56207509 ID=Msa0649530-mRNA-1:exon:14575;Parent=Msa0649530-mRNA-1
chr4_3 exon 56207900 56208020 56207900 ID=Msa0649530-mRNA-1:exon:14574;Parent=Msa0649530-mRNA-1
chr4_3 exon 56208900 56209029 56208900 ID=Msa0649530-mRNA-1:exon:14573;Parent=Msa0649530-mRNA-1
chr4_3 exon 56209111 56209239 56209111 ID=Msa0649530-mRNA-1:exon:14572;Parent=Msa0649530-mRNA-1
chr4_3 exon 56211116 56211190 56211116 ID=Msa0649530-mRNA-1:exon:14571;Parent=Msa0649530-mRNA-1
chr4_3 exon 56211289 56211662 56211289 ID=Msa0649530-mRNA-1:exon:14570;Parent=Msa0649530-mRNA-1
chr4_3 five_prime_UTR 56211532 56211662 56211532 ID=Msa0649530-mRNA-1:five_prime_utr;Parent=Msa0649530-mRNA-1
chr4_3 CDS 56211289 56211531 56211289 ID=Msa0649530-mRNA-1:cds;Parent=Msa0649530-mRNA-1
chr4_3 CDS 56211116 56211190 56211116 ID=Msa0649530-mRNA-1:cds;Parent=Msa0649530-mRNA-1
chr4_3 CDS 56209111 56209239 56209111 ID=Msa0649530-mRNA-1:cds;Parent=Msa0649530-mRNA-1
chr4_3 CDS 56208900 56209029 56208900 ID=Msa0649530-mRNA-1:cds;Parent=Msa0649530-mRNA-1
chr4_3 CDS 56207900 56208020 56207900 ID=Msa0649530-mRNA-1:cds;Parent=Msa0649530-mRNA-1
chr4_3 CDS 56207509 56207590 56207509 ID=Msa0649530-mRNA-1:cds;Parent=Msa0649530-mRNA-1
chr4_3 CDS 56207140 56207193 56207140 ID=Msa0649530-mRNA-1:cds;Parent=Msa0649530-mRNA-1
chr4_3 CDS 56207011 56207049 56207011 ID=Msa0649530-mRNA-1:cds;Parent=Msa0649530-mRNA-1
chr4_3 CDS 56206033 56206132 56206033 ID=Msa0649530-mRNA-1:cds;Parent=Msa0649530-mRNA-1
chr4_3 CDS 56205700 56205833 56205700 ID=Msa0649530-mRNA-1:cds;Parent=Msa0649530-mRNA-1
chr4_3 three_prime_UTR 56205253 56205699 56205253 ID=Msa0649530-mRNA-1:three_prime_utr;Parent=Msa0649530-mRNA-1
Gene Sequence

>Msa0649530

ATGGCTCAATTATTGTCACCACTATACACAGAAGCTCTAAAAATCCACAACCCATCGCTGAATTTGTGTCGTAGAAGCTCATGGCAGATGCTACAACAAAAAACTGCAACTAGTCCATGGAGATTTGCAACACCAAGTTGCAAACGAAGAGGTTTTGGTAGAGTAAAAGTTGCTACTGATCAGGAATCATTTTCAACCAGTGACAGTGTTGGAGCTGAAGACTATTATGCAGTTTTGGGTCTGAATTTCAAGGATATTACCCAAAATGGTTCCTTCATATTTTCTGGGACTGGGATACATGTGTATATGTTAGGAGAGCTTCCAGATGCAACAGCGGAGCAGATCAAGAAGGCATACTACAATTGTATGAAAACATGCCACCCGGATTTGAGTGGCAACGATCCCGAGACCACAAATTTCTGCACCTTCATTAATGAAGTCTATGAGGTGCTCAGTGATCCAGTTCAGCGCAGGGTTTATGATGATATTCATGGCTATTCTTTGACATCAATCAATCCTTTCATGGACGATTCTAGTCCGAAGGATCATGTTTTCGTCGATGAATTCAGCTGCATAGGCTGCAAAAACTGTGCCAATGTTGCCTGTGATGTGTTTGGAATTGAAGAAGACTTTGGAAGAGCCAGAGTATACAATCAGTTTGGGAACCCTGAATTAATTCAAACGGCTATTGAAAGTTGCCCTGTTGACTGCATTCATTGGACATCAGCTGCACAACTATCATTACTTGAAGATGAAATGCGCCGTATAGAAAGAGTCAATGTTGCTCTAATGCTTTCAGGAATGGGATCAGCATTAGGCGATGTTTTCAGAATGGCAAATACCCGATGGGAGAAAAGACAGTTAAAATTCTTGGAACAAGCGAGGTCGAGAATGATGAAGCAGAAAGGTTATGATAAAACAAATTCATACTGGGACAATCTTCGTGGAAAACCAAGAGACTACGAAAATTCAGAGGAGGAAGTAAAAGAAAGAGCTAAAAGAGCTGCAGCTGCTGCTAGAAAATGGAGGGAATACTCAAGGAAGGGTGGTGCTGTTAAGCCTTCCACAGTCAAACTTCCAGAGGAAACCTCTTCCACCAAGGACTAG

Protein sequence

>Msa0649530

MAQLLSPLYTEALKIHNPSLNLCRRSSWQMLQQKTATSPWRFATPSCKRRGFGRVKVATDQESFSTSDSVGAEDYYAVLGLNFKDITQNGSFIFSGTGIHVYMLGELPDATAEQIKKAYYNCMKTCHPDLSGNDPETTNFCTFINEVYEVLSDPVQRRVYDDIHGYSLTSINPFMDDSSPKDHVFVDEFSCIGCKNCANVACDVFGIEEDFGRARVYNQFGNPELIQTAIESCPVDCIHWTSAAQLSLLEDEMRRIERVNVALMLSGMGSALGDVFRMANTRWEKRQLKFLEQARSRMMKQKGYDKTNSYWDNLRGKPRDYENSEEEVKERAKRAAAAARKWREYSRKGGAVKPSTVKLPEETSSTKD*