Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040660 | sp|Q84MC0|UGPI4_ARATH | 58.101 | 179 | 71 | 2 | 25 | 199 | 21 | 199 | 1.49e-70 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040660 | Msa0184680 | 0.924547 | 6.089632e-90 | -8.615850e-47 |
| Msa0040660 | Msa0193850 | 0.847873 | 8.775725e-60 | -8.615850e-47 |
| Msa0040660 | Msa0199960 | 0.833134 | 6.349092e-56 | -8.615850e-47 |
| Msa0040660 | Msa0235710 | 0.839938 | 1.174213e-57 | -8.615850e-47 |
| Msa0040660 | Msa0242490 | 0.813169 | 2.931909e-51 | -8.615850e-47 |
| Msa0040660 | Msa0243600 | 0.816372 | 5.721718e-52 | -8.615850e-47 |
| Msa0040660 | Msa0274440 | 0.863425 | 2.512091e-64 | -8.615850e-47 |
| Msa0040660 | Msa0280690 | 0.844350 | 7.982718e-59 | -8.615850e-47 |
| Msa0040660 | Msa0282220 | 0.849096 | 4.026657e-60 | -8.615850e-47 |
| Msa0040660 | Msa0314170 | 0.865474 | 5.753723e-65 | -8.615850e-47 |
| Msa0040660 | Msa0319940 | 0.817135 | 3.858030e-52 | -8.615850e-47 |
| Msa0040660 | Msa0389500 | 0.815077 | 1.112307e-51 | -8.615850e-47 |
| Msa0040660 | Msa0475290 | 0.804142 | 2.489775e-49 | -8.615850e-47 |
| Msa0040660 | Msa0601820 | 0.816224 | 6.175884e-52 | -8.615850e-47 |
| Msa0040660 | Msa0642950 | 0.817611 | 3.015266e-52 | -8.615850e-47 |
| Msa0040660 | Msa0688820 | 0.939545 | 1.062364e-99 | -8.615850e-47 |
| Msa0040660 | Msa0818710 | 0.810638 | 1.043416e-50 | -8.615850e-47 |
| Msa0040660 | Msa0968350 | 0.854566 | 1.130496e-61 | -8.615850e-47 |
| Msa0040660 | Msa1037550 | 0.830109 | 3.534258e-55 | -8.615850e-47 |
| Msa0040660 | Msa1078930 | 0.849651 | 2.819834e-60 | -8.615850e-47 |
| Msa0040660 | Msa1123930 | 0.852226 | 5.304451e-61 | -8.615850e-47 |
| Msa0040660 | Msa1130430 | 0.819795 | 9.628445e-53 | -8.615850e-47 |
| Msa0040660 | Msa1131290 | 0.819636 | 1.046454e-52 | -8.615850e-47 |
| Msa0040660 | Msa1169230 | 0.829881 | 4.017070e-55 | -8.615850e-47 |
| Msa0040660 | Msa1170830 | 0.802725 | 4.895426e-49 | -8.615850e-47 |
| Msa0040660 | Msa1222590 | 0.852035 | 6.011956e-61 | -8.615850e-47 |
| Msa0040660 | Msa1264570 | 0.880358 | 5.862097e-70 | -8.615850e-47 |
| Msa0040660 | Msa1340700 | 0.850933 | 1.232538e-60 | -8.615850e-47 |
| Msa0040660 | Msa1426070 | 0.846921 | 1.602719e-59 | -8.615850e-47 |
| Msa0040660 | Msa1430750 | 0.847774 | 9.347450e-60 | -8.615850e-47 |
| Msa0040660 | Msa1436420 | 0.845433 | 4.073085e-59 | -8.615850e-47 |
| Msa0040660 | Msa1445050 | 0.820687 | 6.011715e-53 | -8.615850e-47 |
| Msa0040660 | Msa1446110 | 0.833306 | 5.752307e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040660 | MtrunA17_Chr1g0205951 | 93.970 | 199 | 12 | 0 | 1 | 199 | 1 | 199 | 9.84e-137 | 380 |
| Msa0040660 | MtrunA17_Chr5g0394151 | 63.902 | 205 | 64 | 2 | 1 | 199 | 1 | 201 | 6.91e-96 | 277 |
| Msa0040660 | MtrunA17_Chr1g0191761 | 36.943 | 157 | 96 | 3 | 20 | 173 | 26 | 182 | 1.83e-31 | 113 |
| Msa0040660 | MtrunA17_Chr7g0272941 | 38.889 | 144 | 84 | 3 | 19 | 159 | 17 | 159 | 5.32e-31 | 112 |
| Msa0040660 | MtrunA17_Chr1g0191781 | 32.727 | 165 | 105 | 3 | 11 | 169 | 6 | 170 | 2.51e-27 | 102 |
| Msa0040660 | MtrunA17_Chr1g0191771 | 34.328 | 134 | 87 | 1 | 31 | 163 | 46 | 179 | 3.42e-23 | 92.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040660 | AT3G06035.1 | 58.101 | 179 | 71 | 2 | 25 | 199 | 21 | 199 | 1.52e-71 | 216 |
| Msa0040660 | AT5G19250.1 | 61.078 | 167 | 63 | 1 | 24 | 188 | 19 | 185 | 5.31e-68 | 206 |
| Msa0040660 | AT1G54860.1 | 41.808 | 177 | 85 | 4 | 1 | 168 | 2 | 169 | 3.09e-46 | 151 |
| Msa0040660 | AT5G19240.1 | 44.767 | 172 | 89 | 3 | 23 | 192 | 20 | 187 | 9.69e-46 | 150 |
| Msa0040660 | AT5G19230.2 | 44.970 | 169 | 81 | 3 | 1 | 169 | 1 | 157 | 2.21e-40 | 136 |
| Msa0040660 | AT5G19230.1 | 44.970 | 169 | 81 | 3 | 1 | 169 | 1 | 157 | 2.21e-40 | 136 |
Find 42 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATTGACATTTAACTAAA+AGG | 0.202634 | 1_1:+70940170 | None:intergenic |
| CCAAGTTCTCTCTATTCTTC+TGG | 0.209568 | 1_1:-70940992 | Msa0040660:CDS |
| GTTATGCCTGCCTGTGTTCC+TGG | 0.264326 | 1_1:-70940121 | Msa0040660:CDS |
| TCCAACTTTGGAAATCAAAT+TGG | 0.265283 | 1_1:+70939928 | None:intergenic |
| TGAGAGAGATAATCTTTATC+AGG | 0.299934 | 1_1:-70940362 | Msa0040660:CDS |
| TGACATTTAACTAAAAGGTT+TGG | 0.309878 | 1_1:+70940175 | None:intergenic |
| AACTAAAAGGTTTGGGTAGT+TGG | 0.309926 | 1_1:+70940183 | None:intergenic |
| GTATTGGCTCAGAAGATAAC+TGG | 0.333128 | 1_1:-70940015 | Msa0040660:CDS |
| GACATTTAACTAAAAGGTTT+GGG | 0.347354 | 1_1:+70940176 | None:intergenic |
| CCAGAAGAATAGAGAGAACT+TGG | 0.347419 | 1_1:+70940992 | None:intergenic |
| GCAATAAATCATTCCAACTT+TGG | 0.358521 | 1_1:+70939916 | None:intergenic |
| TACATGGTTGATTCTTGAAT+TGG | 0.360348 | 1_1:+70940254 | None:intergenic |
| ATTGGCAGCATTAGAACTAT+AGG | 0.374058 | 1_1:+70939946 | None:intergenic |
| GCCAATTTGATTTCCAAAGT+TGG | 0.375408 | 1_1:-70939929 | Msa0040660:CDS |
| TTGGCAGCATTAGAACTATA+GGG | 0.380106 | 1_1:+70939947 | None:intergenic |
| CATCCTCTAGGTATCATAAC+AGG | 0.398840 | 1_1:+70939864 | None:intergenic |
| TCACCGTCATCACATTTAAC+TGG | 0.400596 | 1_1:+70940930 | None:intergenic |
| GACACACAGTATACAGGAAT+TGG | 0.421140 | 1_1:-70940037 | Msa0040660:CDS |
| TGCTCAATTCTCTTGTTAGC+TGG | 0.427277 | 1_1:-70939896 | Msa0040660:CDS |
| CTCAACGACACACAGTATAC+AGG | 0.481619 | 1_1:-70940043 | Msa0040660:CDS |
| TTGACCACTGACACTCCAAC+AGG | 0.483770 | 1_1:-70939980 | Msa0040660:CDS |
| TTTGGGTAGTTGGAGAATTG+AGG | 0.485525 | 1_1:+70940193 | None:intergenic |
| ATTGGCTATTTCTGATACAA+AGG | 0.497292 | 1_1:-70940152 | Msa0040660:CDS |
| ACGAGGCTTGAAGCTAGGCC+AGG | 0.504069 | 1_1:+70940103 | None:intergenic |
| TGAAGCTAGGCCAGGAACAC+AGG | 0.509872 | 1_1:+70940111 | None:intergenic |
| GCTAGGCCAGGAACACAGGC+AGG | 0.513127 | 1_1:+70940115 | None:intergenic |
| GAGAATTGAGGTTCAGTACC+TGG | 0.522201 | 1_1:+70940205 | None:intergenic |
| GCTATTTCTGATACAAAGGA+TGG | 0.531181 | 1_1:-70940148 | Msa0040660:CDS |
| CAGTATACAGGAATTGGTAT+TGG | 0.536270 | 1_1:-70940031 | Msa0040660:CDS |
| GCACCTGTGGTATTTGTACA+TGG | 0.542966 | 1_1:+70940238 | None:intergenic |
| TCGTGAAGTTAGTGAGGACG+AGG | 0.562843 | 1_1:+70940086 | None:intergenic |
| TGAGGACGAGGCTTGAAGCT+AGG | 0.566605 | 1_1:+70940098 | None:intergenic |
| GTTTCCTGTTGGAGTGTCAG+TGG | 0.576612 | 1_1:+70939976 | None:intergenic |
| GAGATTTCGTGAAGTTAGTG+AGG | 0.582648 | 1_1:+70940080 | None:intergenic |
| GAGAGAGATAATCTTTATCA+GGG | 0.592178 | 1_1:-70940361 | Msa0040660:CDS |
| TATCCAGTTAAATGTGATGA+CGG | 0.600716 | 1_1:-70940933 | Msa0040660:intron |
| TGGTACTGTATTAGCACCTG+TGG | 0.607702 | 1_1:+70940225 | None:intergenic |
| TGGCAGCATTAGAACTATAG+GGG | 0.612217 | 1_1:+70939948 | None:intergenic |
| ACAGGTGCTAATACAGTACC+AGG | 0.621692 | 1_1:-70940223 | Msa0040660:CDS |
| CAGAAGAATAGAGAGAACTT+GGG | 0.624874 | 1_1:+70940993 | None:intergenic |
| CAACCATGTACAAATACCAC+AGG | 0.631778 | 1_1:-70940241 | Msa0040660:CDS |
| GGCAGCATTAGAACTATAGG+GGG | 0.666389 | 1_1:+70939949 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGACCAATACAAAATA+TGG | + | chr1_1:70940030-70940049 | None:intergenic | 20.0% |
| !!! | ATTTTGACCAATACAAAATA+TGG | + | chr1_1:70940030-70940049 | None:intergenic | 20.0% |
| !! | TCTTAGACCATATTTTGTAT+TGG | - | chr1_1:70940020-70940039 | Msa0040660:CDS | 25.0% |
| ! | ATTCATGAGATTAATGTCAT+TGG | - | chr1_1:70940095-70940114 | Msa0040660:CDS | 25.0% |
| ! | ATTCATGAGATTAATGTCAT+TGG | - | chr1_1:70940095-70940114 | Msa0040660:CDS | 25.0% |
| ! | GACATTTAACTAAAAGGTTT+GGG | + | chr1_1:70940706-70940725 | None:intergenic | 25.0% |
| ! | TGACATTTAACTAAAAGGTT+TGG | + | chr1_1:70940707-70940726 | None:intergenic | 25.0% |
| ! | CCAATTGACATTTAACTAAA+AGG | + | chr1_1:70940712-70940731 | None:intergenic | 25.0% |
| !!! | CCTTTTAGTTAAATGTCAAT+TGG | - | chr1_1:70940709-70940728 | Msa0040660:intron | 25.0% |
| !! | TCTTAGACCATATTTTGTAT+TGG | - | chr1_1:70940020-70940039 | Msa0040660:CDS | 25.0% |
| ! | ATTCATGAGATTAATGTCAT+TGG | - | chr1_1:70940095-70940114 | Msa0040660:CDS | 25.0% |
| ! | ATTCATGAGATTAATGTCAT+TGG | - | chr1_1:70940095-70940114 | Msa0040660:CDS | 25.0% |
| ! | GACATTTAACTAAAAGGTTT+GGG | + | chr1_1:70940706-70940725 | None:intergenic | 25.0% |
| ! | TGACATTTAACTAAAAGGTT+TGG | + | chr1_1:70940707-70940726 | None:intergenic | 25.0% |
| ! | CCAATTGACATTTAACTAAA+AGG | + | chr1_1:70940712-70940731 | None:intergenic | 25.0% |
| !!! | CCTTTTAGTTAAATGTCAAT+TGG | - | chr1_1:70940709-70940728 | Msa0040660:intron | 25.0% |
| TATCCAGTTAAATGTGATGA+CGG | - | chr1_1:70939946-70939965 | Msa0040660:CDS | 30.0% | |
| TGTCAGTGAACAAAATGATT+TGG | + | chr1_1:70940389-70940408 | None:intergenic | 30.0% | |
| TTTCAGCTTCATTGTGTATA+TGG | + | chr1_1:70940455-70940474 | None:intergenic | 30.0% | |
| TGCAGAAAAAACATTGAACA+GGG | + | chr1_1:70940495-70940514 | None:intergenic | 30.0% | |
| TGAGAGAGATAATCTTTATC+AGG | - | chr1_1:70940517-70940536 | Msa0040660:intron | 30.0% | |
| GAGAGAGATAATCTTTATCA+GGG | - | chr1_1:70940518-70940537 | Msa0040660:intron | 30.0% | |
| ! | TACATGGTTGATTCTTGAAT+TGG | + | chr1_1:70940628-70940647 | None:intergenic | 30.0% |
| !! | ATTGGCTATTTCTGATACAA+AGG | - | chr1_1:70940727-70940746 | Msa0040660:intron | 30.0% |
| ! | TCCAACTTTGGAAATCAAAT+TGG | + | chr1_1:70940954-70940973 | None:intergenic | 30.0% |
| GCAATAAATCATTCCAACTT+TGG | + | chr1_1:70940966-70940985 | None:intergenic | 30.0% | |
| TATCCAGTTAAATGTGATGA+CGG | - | chr1_1:70939946-70939965 | Msa0040660:CDS | 30.0% | |
| TGTCAGTGAACAAAATGATT+TGG | + | chr1_1:70940389-70940408 | None:intergenic | 30.0% | |
| TTTCAGCTTCATTGTGTATA+TGG | + | chr1_1:70940455-70940474 | None:intergenic | 30.0% | |
| TGCAGAAAAAACATTGAACA+GGG | + | chr1_1:70940495-70940514 | None:intergenic | 30.0% | |
| TGAGAGAGATAATCTTTATC+AGG | - | chr1_1:70940517-70940536 | Msa0040660:intron | 30.0% | |
| GAGAGAGATAATCTTTATCA+GGG | - | chr1_1:70940518-70940537 | Msa0040660:intron | 30.0% | |
| ! | TACATGGTTGATTCTTGAAT+TGG | + | chr1_1:70940628-70940647 | None:intergenic | 30.0% |
| !! | ATTGGCTATTTCTGATACAA+AGG | - | chr1_1:70940727-70940746 | Msa0040660:intron | 30.0% |
| ! | TCCAACTTTGGAAATCAAAT+TGG | + | chr1_1:70940954-70940973 | None:intergenic | 30.0% |
| GCAATAAATCATTCCAACTT+TGG | + | chr1_1:70940966-70940985 | None:intergenic | 30.0% | |
| CAGAAGAATAGAGAGAACTT+GGG | + | chr1_1:70939889-70939908 | None:intergenic | 35.0% | |
| CTAAGCTTGAAATGAGTCAT+GGG | + | chr1_1:70940168-70940187 | None:intergenic | 35.0% | |
| ATGCCTCTTAAAACATTCAC+TGG | - | chr1_1:70940288-70940307 | Msa0040660:CDS | 35.0% | |
| !! | TGTCCAGTGAATGTTTTAAG+AGG | + | chr1_1:70940294-70940313 | None:intergenic | 35.0% |
| CTGCAGAAAAAACATTGAAC+AGG | + | chr1_1:70940496-70940515 | None:intergenic | 35.0% | |
| AACTAAAAGGTTTGGGTAGT+TGG | + | chr1_1:70940699-70940718 | None:intergenic | 35.0% | |
| !! | GCTATTTCTGATACAAAGGA+TGG | - | chr1_1:70940731-70940750 | Msa0040660:intron | 35.0% |
| CAGTATACAGGAATTGGTAT+TGG | - | chr1_1:70940848-70940867 | Msa0040660:intron | 35.0% | |
| TTGGCAGCATTAGAACTATA+GGG | + | chr1_1:70940935-70940954 | None:intergenic | 35.0% | |
| ATTGGCAGCATTAGAACTAT+AGG | + | chr1_1:70940936-70940955 | None:intergenic | 35.0% | |
| ! | GCCAATTTGATTTCCAAAGT+TGG | - | chr1_1:70940950-70940969 | Msa0040660:CDS | 35.0% |
| CAGAAGAATAGAGAGAACTT+GGG | + | chr1_1:70939889-70939908 | None:intergenic | 35.0% | |
| CTAAGCTTGAAATGAGTCAT+GGG | + | chr1_1:70940168-70940187 | None:intergenic | 35.0% | |
| ATGCCTCTTAAAACATTCAC+TGG | - | chr1_1:70940288-70940307 | Msa0040660:CDS | 35.0% | |
| !! | TGTCCAGTGAATGTTTTAAG+AGG | + | chr1_1:70940294-70940313 | None:intergenic | 35.0% |
| CTGCAGAAAAAACATTGAAC+AGG | + | chr1_1:70940496-70940515 | None:intergenic | 35.0% | |
| AACTAAAAGGTTTGGGTAGT+TGG | + | chr1_1:70940699-70940718 | None:intergenic | 35.0% | |
| !! | GCTATTTCTGATACAAAGGA+TGG | - | chr1_1:70940731-70940750 | Msa0040660:intron | 35.0% |
| CAGTATACAGGAATTGGTAT+TGG | - | chr1_1:70940848-70940867 | Msa0040660:intron | 35.0% | |
| TTGGCAGCATTAGAACTATA+GGG | + | chr1_1:70940935-70940954 | None:intergenic | 35.0% | |
| ATTGGCAGCATTAGAACTAT+AGG | + | chr1_1:70940936-70940955 | None:intergenic | 35.0% | |
| ! | GCCAATTTGATTTCCAAAGT+TGG | - | chr1_1:70940950-70940969 | Msa0040660:CDS | 35.0% |
| CCAGAAGAATAGAGAGAACT+TGG | + | chr1_1:70939890-70939909 | None:intergenic | 40.0% | |
| CCAAGTTCTCTCTATTCTTC+TGG | - | chr1_1:70939887-70939906 | Msa0040660:CDS | 40.0% | |
| TCACCGTCATCACATTTAAC+TGG | + | chr1_1:70939952-70939971 | None:intergenic | 40.0% | |
| GCTAAGCTTGAAATGAGTCA+TGG | + | chr1_1:70940169-70940188 | None:intergenic | 40.0% | |
| TTGAGTAATGCACAGATGAC+AGG | + | chr1_1:70940319-70940338 | None:intergenic | 40.0% | |
| ! | TCTCAGTTGTGACCTTTTTC+TGG | - | chr1_1:70940410-70940429 | Msa0040660:intron | 40.0% |
| ACAGGGTAAGTGTAGTGTAA+TGG | + | chr1_1:70940478-70940497 | None:intergenic | 40.0% | |
| !! | GGTCAGCTATTTTATCAGCA+AGG | + | chr1_1:70940607-70940626 | None:intergenic | 40.0% |
| CAACCATGTACAAATACCAC+AGG | - | chr1_1:70940638-70940657 | Msa0040660:intron | 40.0% | |
| TTTGGGTAGTTGGAGAATTG+AGG | + | chr1_1:70940689-70940708 | None:intergenic | 40.0% | |
| GAGATTTCGTGAAGTTAGTG+AGG | + | chr1_1:70940802-70940821 | None:intergenic | 40.0% | |
| GACACACAGTATACAGGAAT+TGG | - | chr1_1:70940842-70940861 | Msa0040660:intron | 40.0% | |
| !! | GTATTGGCTCAGAAGATAAC+TGG | - | chr1_1:70940864-70940883 | Msa0040660:intron | 40.0% |
| TGGCAGCATTAGAACTATAG+GGG | + | chr1_1:70940934-70940953 | None:intergenic | 40.0% | |
| TGCTCAATTCTCTTGTTAGC+TGG | - | chr1_1:70940983-70941002 | Msa0040660:CDS | 40.0% | |
| CCAGAAGAATAGAGAGAACT+TGG | + | chr1_1:70939890-70939909 | None:intergenic | 40.0% | |
| CCAAGTTCTCTCTATTCTTC+TGG | - | chr1_1:70939887-70939906 | Msa0040660:CDS | 40.0% | |
| TCACCGTCATCACATTTAAC+TGG | + | chr1_1:70939952-70939971 | None:intergenic | 40.0% | |
| GCTAAGCTTGAAATGAGTCA+TGG | + | chr1_1:70940169-70940188 | None:intergenic | 40.0% | |
| TTGAGTAATGCACAGATGAC+AGG | + | chr1_1:70940319-70940338 | None:intergenic | 40.0% | |
| ! | TCTCAGTTGTGACCTTTTTC+TGG | - | chr1_1:70940410-70940429 | Msa0040660:intron | 40.0% |
| ACAGGGTAAGTGTAGTGTAA+TGG | + | chr1_1:70940478-70940497 | None:intergenic | 40.0% | |
| !! | GGTCAGCTATTTTATCAGCA+AGG | + | chr1_1:70940607-70940626 | None:intergenic | 40.0% |
| CAACCATGTACAAATACCAC+AGG | - | chr1_1:70940638-70940657 | Msa0040660:intron | 40.0% | |
| TTTGGGTAGTTGGAGAATTG+AGG | + | chr1_1:70940689-70940708 | None:intergenic | 40.0% | |
| GAGATTTCGTGAAGTTAGTG+AGG | + | chr1_1:70940802-70940821 | None:intergenic | 40.0% | |
| GACACACAGTATACAGGAAT+TGG | - | chr1_1:70940842-70940861 | Msa0040660:intron | 40.0% | |
| !! | GTATTGGCTCAGAAGATAAC+TGG | - | chr1_1:70940864-70940883 | Msa0040660:intron | 40.0% |
| TGGCAGCATTAGAACTATAG+GGG | + | chr1_1:70940934-70940953 | None:intergenic | 40.0% | |
| TGCTCAATTCTCTTGTTAGC+TGG | - | chr1_1:70940983-70941002 | Msa0040660:CDS | 40.0% | |
| TGTGCATGTGTGCCAGAAAA+AGG | + | chr1_1:70940425-70940444 | None:intergenic | 45.0% | |
| GCACCTGTGGTATTTGTACA+TGG | + | chr1_1:70940644-70940663 | None:intergenic | 45.0% | |
| TGGTACTGTATTAGCACCTG+TGG | + | chr1_1:70940657-70940676 | None:intergenic | 45.0% | |
| ACAGGTGCTAATACAGTACC+AGG | - | chr1_1:70940656-70940675 | Msa0040660:intron | 45.0% | |
| GAGAATTGAGGTTCAGTACC+TGG | + | chr1_1:70940677-70940696 | None:intergenic | 45.0% | |
| CTCAACGACACACAGTATAC+AGG | - | chr1_1:70940836-70940855 | Msa0040660:intron | 45.0% | |
| GGCAGCATTAGAACTATAGG+GGG | + | chr1_1:70940933-70940952 | None:intergenic | 45.0% | |
| TGTGCATGTGTGCCAGAAAA+AGG | + | chr1_1:70940425-70940444 | None:intergenic | 45.0% | |
| GCACCTGTGGTATTTGTACA+TGG | + | chr1_1:70940644-70940663 | None:intergenic | 45.0% | |
| TGGTACTGTATTAGCACCTG+TGG | + | chr1_1:70940657-70940676 | None:intergenic | 45.0% | |
| ACAGGTGCTAATACAGTACC+AGG | - | chr1_1:70940656-70940675 | Msa0040660:intron | 45.0% | |
| GAGAATTGAGGTTCAGTACC+TGG | + | chr1_1:70940677-70940696 | None:intergenic | 45.0% | |
| CTCAACGACACACAGTATAC+AGG | - | chr1_1:70940836-70940855 | Msa0040660:intron | 45.0% | |
| GGCAGCATTAGAACTATAGG+GGG | + | chr1_1:70940933-70940952 | None:intergenic | 45.0% | |
| TCATCGCAGTCGCGAGATTA+GGG | + | chr1_1:70940242-70940261 | None:intergenic | 50.0% | |
| TTCATCGCAGTCGCGAGATT+AGG | + | chr1_1:70940243-70940262 | None:intergenic | 50.0% | |
| TCGTGAAGTTAGTGAGGACG+AGG | + | chr1_1:70940796-70940815 | None:intergenic | 50.0% | |
| TTGACCACTGACACTCCAAC+AGG | - | chr1_1:70940899-70940918 | Msa0040660:intron | 50.0% | |
| ! | GTTTCCTGTTGGAGTGTCAG+TGG | + | chr1_1:70940906-70940925 | None:intergenic | 50.0% |
| TAGGGGGCAAAGTTTCCTGT+TGG | + | chr1_1:70940917-70940936 | None:intergenic | 50.0% | |
| TCATCGCAGTCGCGAGATTA+GGG | + | chr1_1:70940242-70940261 | None:intergenic | 50.0% | |
| TTCATCGCAGTCGCGAGATT+AGG | + | chr1_1:70940243-70940262 | None:intergenic | 50.0% | |
| TCGTGAAGTTAGTGAGGACG+AGG | + | chr1_1:70940796-70940815 | None:intergenic | 50.0% | |
| TTGACCACTGACACTCCAAC+AGG | - | chr1_1:70940899-70940918 | Msa0040660:intron | 50.0% | |
| ! | GTTTCCTGTTGGAGTGTCAG+TGG | + | chr1_1:70940906-70940925 | None:intergenic | 50.0% |
| TAGGGGGCAAAGTTTCCTGT+TGG | + | chr1_1:70940917-70940936 | None:intergenic | 50.0% | |
| GTTATGCCTGCCTGTGTTCC+TGG | - | chr1_1:70940758-70940777 | Msa0040660:intron | 55.0% | |
| TGAAGCTAGGCCAGGAACAC+AGG | + | chr1_1:70940771-70940790 | None:intergenic | 55.0% | |
| TGAGGACGAGGCTTGAAGCT+AGG | + | chr1_1:70940784-70940803 | None:intergenic | 55.0% | |
| GTTATGCCTGCCTGTGTTCC+TGG | - | chr1_1:70940758-70940777 | Msa0040660:intron | 55.0% | |
| TGAAGCTAGGCCAGGAACAC+AGG | + | chr1_1:70940771-70940790 | None:intergenic | 55.0% | |
| TGAGGACGAGGCTTGAAGCT+AGG | + | chr1_1:70940784-70940803 | None:intergenic | 55.0% | |
| ACGAGGCTTGAAGCTAGGCC+AGG | + | chr1_1:70940779-70940798 | None:intergenic | 60.0% | |
| ACGAGGCTTGAAGCTAGGCC+AGG | + | chr1_1:70940779-70940798 | None:intergenic | 60.0% | |
| GCTAGGCCAGGAACACAGGC+AGG | + | chr1_1:70940767-70940786 | None:intergenic | 65.0% | |
| GCTAGGCCAGGAACACAGGC+AGG | + | chr1_1:70940767-70940786 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 70939877 | 70941024 | 70939877 | ID=Msa0040660;Name=Msa0040660 |
| chr1_1 | mRNA | 70939877 | 70941024 | 70939877 | ID=Msa0040660-mRNA-1;Parent=Msa0040660;Name=Msa0040660-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|2|0|199 |
| chr1_1 | exon | 70940934 | 70941024 | 70940934 | ID=Msa0040660-mRNA-1:exon:23441;Parent=Msa0040660-mRNA-1 |
| chr1_1 | exon | 70939877 | 70940385 | 70939877 | ID=Msa0040660-mRNA-1:exon:23440;Parent=Msa0040660-mRNA-1 |
| chr1_1 | CDS | 70940934 | 70941024 | 70940934 | ID=Msa0040660-mRNA-1:cds;Parent=Msa0040660-mRNA-1 |
| chr1_1 | CDS | 70939877 | 70940385 | 70939877 | ID=Msa0040660-mRNA-1:cds;Parent=Msa0040660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
