AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0134270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0134270 MtrunA17_Chr1g0204471 94.656 262 10 2 1 258 1 262 1.66e-173 478
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0134270 AT5G51680.1 30.588 340 145 10 4 258 10 343 4.74e-22 94.0

Find 57 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCTTCAATTCCTTTCATT+TGG 0.224391 1_3:-65817133 Msa0134270:CDS
AAGAAAGGAAGAAACATATT+AGG 0.233439 1_3:-65817160 Msa0134270:CDS
TTGCCTCAATTCCCTTTGTT+TGG 0.279099 1_3:-65817031 Msa0134270:CDS
TGAAAAGTTAAGTTCAAGTT+TGG 0.340393 1_3:-65816673 Msa0134270:CDS
ACCTTCAATTCCTTTCATTT+GGG 0.345813 1_3:-65817132 Msa0134270:CDS
TATCAAAACTAAATGATTCT+AGG 0.360427 1_3:+65816937 None:intergenic
ACCGGAAGGTCAAGTTTAAC+TGG 0.368754 1_3:-65816771 Msa0134270:CDS
ACCACGAGAAAGCAAGCTTT+TGG 0.370273 1_3:-65816204 Msa0134270:CDS
TGCCTCAATTCCCTTTGTTT+GGG 0.372035 1_3:-65817030 Msa0134270:CDS
CCTTTGTTTCCACCAAAGTC+TGG 0.375252 1_3:-65816723 Msa0134270:CDS
AAGCAACTCAAATGAACAAA+TGG 0.378323 1_3:-65816536 Msa0134270:CDS
TTCAAGTTTGGTGGAACTAA+AGG 0.388380 1_3:-65816661 Msa0134270:CDS
AACTGAGTTAAATGATTCAT+TGG 0.396407 1_3:+65816914 None:intergenic
AAACTAGGGAGGGGTATTCC+AGG 0.409764 1_3:+65816999 None:intergenic
TTCTAGGTCCAAGCTAGTTA+TGG 0.418005 1_3:+65816953 None:intergenic
AGAAAGGAAGAAACATATTA+GGG 0.423493 1_3:-65817159 Msa0134270:CDS
ATGGAACAAGTTACCTTTGG+TGG 0.430078 1_3:+65816510 None:intergenic
TCAAGTTTGGTGGAACTAAA+GGG 0.439502 1_3:-65816660 Msa0134270:CDS
ACCAGTTAAACTTGACCTTC+CGG 0.442504 1_3:+65816770 None:intergenic
CAGGCATTCCTATAAAAGAT+TGG 0.447195 1_3:-65817100 Msa0134270:CDS
AAAGTTAAGTTCAAGTTTGG+TGG 0.448826 1_3:-65816670 Msa0134270:CDS
CTCTCCAGCTTCGTCGGAGA+TGG 0.451790 1_3:-65816817 Msa0134270:CDS
CTTTCAAGAAAACCAGACTT+TGG 0.465296 1_3:+65816711 None:intergenic
TTCCCAAACAAAGGGAATTG+AGG 0.478406 1_3:+65817028 None:intergenic
CTTTAGACTAGTTTCAGCCT+AGG 0.480571 1_3:+65816120 None:intergenic
AGAGAGTTTGCAAGTAAAGA+AGG 0.480592 1_3:+65816891 None:intergenic
CTATCCATCTCCGACGAAGC+TGG 0.483008 1_3:+65816813 None:intergenic
TTTAGACTAGTTTCAGCCTA+GGG 0.498911 1_3:+65816121 None:intergenic
TCCCAAATGAAAGGAATTGA+AGG 0.504204 1_3:+65817131 None:intergenic
AGCAACTCAAATGAACAAAT+GGG 0.509084 1_3:-65816535 Msa0134270:CDS
TCATCAACATGTGAGAAACT+AGG 0.514045 1_3:+65816984 None:intergenic
TCAAGAAAACCAGACTTTGG+TGG 0.518874 1_3:+65816714 None:intergenic
ACAAGCAGCAGTATCATTGA+AGG 0.522761 1_3:-65816165 Msa0134270:CDS
TCCGACGAAGCTGGAGAGGA+TGG 0.522845 1_3:+65816822 None:intergenic
ATAATTAACTCTCCAAGTGT+TGG 0.527351 1_3:+65816588 None:intergenic
GAGGATGGAGTTTGCTGTAG+TGG 0.531543 1_3:+65816837 None:intergenic
TCCATCCTCTCCAGCTTCGT+CGG 0.537624 1_3:-65816823 Msa0134270:CDS
TTCATTTGGGAAACAAAACC+AGG 0.538522 1_3:-65817119 Msa0134270:CDS
TCAAGGAAGCAACCAACACT+TGG 0.542435 1_3:-65816600 Msa0134270:CDS
TTGCTTCCTTGACATATCAC+AGG 0.543111 1_3:+65816611 None:intergenic
CCAGACTTTGGTGGAAACAA+AGG 0.545773 1_3:+65816723 None:intergenic
TCCAAAAGCTTGCTTTCTCG+TGG 0.546204 1_3:+65816203 None:intergenic
CATCAACATGTGAGAAACTA+GGG 0.549198 1_3:+65816985 None:intergenic
GGTAATTGACAAAATGACAC+TGG 0.550713 1_3:+65817074 None:intergenic
AGTATAAGCAGCTATGAGAC+CGG 0.561394 1_3:-65816789 Msa0134270:CDS
ATTATACCTGTGATATGTCA+AGG 0.573360 1_3:-65816617 Msa0134270:CDS
GAGTGAAACCATAACTAGCT+TGG 0.574998 1_3:-65816961 Msa0134270:CDS
TGAAGAGAAAGTACTACCCT+AGG 0.596271 1_3:-65816137 Msa0134270:CDS
CATCTCCGACGAAGCTGGAG+AGG 0.596381 1_3:+65816818 None:intergenic
TGGAGTTTGCTGTAGTGGCA+TGG 0.598354 1_3:+65816842 None:intergenic
CAAATGAAAGGAATTGAAGG+TGG 0.607064 1_3:+65817134 None:intergenic
GAACAAATGGGATCCACCAA+AGG 0.609336 1_3:-65816523 Msa0134270:intron
ACATGTGAGAAACTAGGGAG+GGG 0.616121 1_3:+65816990 None:intergenic
AACATGTGAGAAACTAGGGA+GGG 0.639709 1_3:+65816989 None:intergenic
CAAGCAGCAGTATCATTGAA+GGG 0.643098 1_3:-65816164 Msa0134270:CDS
TAAGCAGCTATGAGACCGGA+AGG 0.643457 1_3:-65816785 Msa0134270:CDS
CAACATGTGAGAAACTAGGG+AGG 0.699559 1_3:+65816988 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATCAAAACTAAATGATTCT+AGG + chr1_3:65816358-65816377 None:intergenic 20.0%
!! AACGTTTATTGACATAAAAA+TGG + chr1_3:65816804-65816823 None:intergenic 20.0%
!! ATTCAAATTAGCATCTAAAT+TGG - chr1_3:65816963-65816982 Msa0134270:CDS 20.0%
!!! AATTGGTTACTTTTTAAGTA+TGG - chr1_3:65816980-65816999 Msa0134270:CDS 20.0%
!! TATCAAAACTAAATGATTCT+AGG + chr1_3:65816358-65816377 None:intergenic 20.0%
!! AACGTTTATTGACATAAAAA+TGG + chr1_3:65816804-65816823 None:intergenic 20.0%
!! ATTCAAATTAGCATCTAAAT+TGG - chr1_3:65816963-65816982 Msa0134270:CDS 20.0%
!!! AATTGGTTACTTTTTAAGTA+TGG - chr1_3:65816980-65816999 Msa0134270:CDS 20.0%
! AAGAAAGGAAGAAACATATT+AGG - chr1_3:65816132-65816151 Msa0134270:CDS 25.0%
! AGAAAGGAAGAAACATATTA+GGG - chr1_3:65816133-65816152 Msa0134270:CDS 25.0%
!!! ATTTGTTTTAGTGGAGTTTT+TGG + chr1_3:65816242-65816261 None:intergenic 25.0%
! AACTGAGTTAAATGATTCAT+TGG + chr1_3:65816381-65816400 None:intergenic 25.0%
!! TGAAAAGTTAAGTTCAAGTT+TGG - chr1_3:65816619-65816638 Msa0134270:CDS 25.0%
! TATGTCAATAAACGTTTCTT+TGG - chr1_3:65816808-65816827 Msa0134270:CDS 25.0%
! CTAAAACGTTGAATTAAGAT+CGG - chr1_3:65816862-65816881 Msa0134270:CDS 25.0%
! ATAATCTCATCGAGAAAAAT+TGG + chr1_3:65816945-65816964 None:intergenic 25.0%
! AAGAAAGGAAGAAACATATT+AGG - chr1_3:65816132-65816151 Msa0134270:CDS 25.0%
! AGAAAGGAAGAAACATATTA+GGG - chr1_3:65816133-65816152 Msa0134270:CDS 25.0%
!!! ATTTGTTTTAGTGGAGTTTT+TGG + chr1_3:65816242-65816261 None:intergenic 25.0%
! AACTGAGTTAAATGATTCAT+TGG + chr1_3:65816381-65816400 None:intergenic 25.0%
!! TGAAAAGTTAAGTTCAAGTT+TGG - chr1_3:65816619-65816638 Msa0134270:CDS 25.0%
! TATGTCAATAAACGTTTCTT+TGG - chr1_3:65816808-65816827 Msa0134270:CDS 25.0%
! CTAAAACGTTGAATTAAGAT+CGG - chr1_3:65816862-65816881 Msa0134270:CDS 25.0%
! ATAATCTCATCGAGAAAAAT+TGG + chr1_3:65816945-65816964 None:intergenic 25.0%
ACCTTCAATTCCTTTCATTT+GGG - chr1_3:65816160-65816179 Msa0134270:CDS 30.0%
!!! ATTGAGGCAATTTGTTTTAG+TGG + chr1_3:65816251-65816270 None:intergenic 30.0%
!!! TTTAACTGGTTCTGCTTTTT+TGG - chr1_3:65816535-65816554 Msa0134270:CDS 30.0%
!!! AAAGTCTGGTTTTCTTGAAA+GGG - chr1_3:65816583-65816602 Msa0134270:CDS 30.0%
! AAAGTTAAGTTCAAGTTTGG+TGG - chr1_3:65816622-65816641 Msa0134270:CDS 30.0%
ATTATACCTGTGATATGTCA+AGG - chr1_3:65816675-65816694 Msa0134270:CDS 30.0%
ATAATTAACTCTCCAAGTGT+TGG + chr1_3:65816707-65816726 None:intergenic 30.0%
AAGCAACTCAAATGAACAAA+TGG - chr1_3:65816756-65816775 Msa0134270:CDS 30.0%
AGCAACTCAAATGAACAAAT+GGG - chr1_3:65816757-65816776 Msa0134270:CDS 30.0%
AAAATGGAACAAGTTACCTT+TGG + chr1_3:65816788-65816807 None:intergenic 30.0%
! GACTTTGTATTTGGAATACT+TGG + chr1_3:65816912-65816931 None:intergenic 30.0%
ACCTTCAATTCCTTTCATTT+GGG - chr1_3:65816160-65816179 Msa0134270:CDS 30.0%
!!! ATTGAGGCAATTTGTTTTAG+TGG + chr1_3:65816251-65816270 None:intergenic 30.0%
!!! TTTAACTGGTTCTGCTTTTT+TGG - chr1_3:65816535-65816554 Msa0134270:CDS 30.0%
!!! AAAGTCTGGTTTTCTTGAAA+GGG - chr1_3:65816583-65816602 Msa0134270:CDS 30.0%
! AAAGTTAAGTTCAAGTTTGG+TGG - chr1_3:65816622-65816641 Msa0134270:CDS 30.0%
ATTATACCTGTGATATGTCA+AGG - chr1_3:65816675-65816694 Msa0134270:CDS 30.0%
ATAATTAACTCTCCAAGTGT+TGG + chr1_3:65816707-65816726 None:intergenic 30.0%
AAGCAACTCAAATGAACAAA+TGG - chr1_3:65816756-65816775 Msa0134270:CDS 30.0%
AGCAACTCAAATGAACAAAT+GGG - chr1_3:65816757-65816776 Msa0134270:CDS 30.0%
AAAATGGAACAAGTTACCTT+TGG + chr1_3:65816788-65816807 None:intergenic 30.0%
! GACTTTGTATTTGGAATACT+TGG + chr1_3:65816912-65816931 None:intergenic 30.0%
CAAATGAAAGGAATTGAAGG+TGG + chr1_3:65816161-65816180 None:intergenic 35.0%
CACCTTCAATTCCTTTCATT+TGG - chr1_3:65816159-65816178 Msa0134270:CDS 35.0%
TCCCAAATGAAAGGAATTGA+AGG + chr1_3:65816164-65816183 None:intergenic 35.0%
!!! GGTTTTGTTTCCCAAATGAA+AGG + chr1_3:65816173-65816192 None:intergenic 35.0%
TTCATTTGGGAAACAAAACC+AGG - chr1_3:65816173-65816192 Msa0134270:CDS 35.0%
! CAATCTTTTATAGGAATGCC+TGG + chr1_3:65816194-65816213 None:intergenic 35.0%
CAGGCATTCCTATAAAAGAT+TGG - chr1_3:65816192-65816211 Msa0134270:CDS 35.0%
!! ACTGGCTTCCAATCTTTTAT+AGG + chr1_3:65816203-65816222 None:intergenic 35.0%
GGTAATTGACAAAATGACAC+TGG + chr1_3:65816221-65816240 None:intergenic 35.0%
! GGTTTTTCTTCCCAAACAAA+GGG + chr1_3:65816275-65816294 None:intergenic 35.0%
! AGGTTTTTCTTCCCAAACAA+AGG + chr1_3:65816276-65816295 None:intergenic 35.0%
TTTGTTTGGGAAGAAAAACC+TGG - chr1_3:65816275-65816294 Msa0134270:intron 35.0%
CATCAACATGTGAGAAACTA+GGG + chr1_3:65816310-65816329 None:intergenic 35.0%
TCATCAACATGTGAGAAACT+AGG + chr1_3:65816311-65816330 None:intergenic 35.0%
AGAGAGTTTGCAAGTAAAGA+AGG + chr1_3:65816404-65816423 None:intergenic 35.0%
CTTTCAAGAAAACCAGACTT+TGG + chr1_3:65816584-65816603 None:intergenic 35.0%
!!! CAAAGTCTGGTTTTCTTGAA+AGG - chr1_3:65816582-65816601 Msa0134270:CDS 35.0%
! GGTTTTCTTGAAAGGGATAT+TGG - chr1_3:65816590-65816609 Msa0134270:CDS 35.0%
! TTCAAGTTTGGTGGAACTAA+AGG - chr1_3:65816631-65816650 Msa0134270:CDS 35.0%
! TCAAGTTTGGTGGAACTAAA+GGG - chr1_3:65816632-65816651 Msa0134270:CDS 35.0%
TCGTAGTCTGACTTTGTATT+TGG + chr1_3:65816921-65816940 None:intergenic 35.0%
TGAAGCAGAAGAGTAAATGT+TGG + chr1_3:65817057-65817076 None:intergenic 35.0%
CAAATGAAAGGAATTGAAGG+TGG + chr1_3:65816161-65816180 None:intergenic 35.0%
CACCTTCAATTCCTTTCATT+TGG - chr1_3:65816159-65816178 Msa0134270:CDS 35.0%
TCCCAAATGAAAGGAATTGA+AGG + chr1_3:65816164-65816183 None:intergenic 35.0%
!!! GGTTTTGTTTCCCAAATGAA+AGG + chr1_3:65816173-65816192 None:intergenic 35.0%
TTCATTTGGGAAACAAAACC+AGG - chr1_3:65816173-65816192 Msa0134270:CDS 35.0%
! CAATCTTTTATAGGAATGCC+TGG + chr1_3:65816194-65816213 None:intergenic 35.0%
CAGGCATTCCTATAAAAGAT+TGG - chr1_3:65816192-65816211 Msa0134270:CDS 35.0%
!! ACTGGCTTCCAATCTTTTAT+AGG + chr1_3:65816203-65816222 None:intergenic 35.0%
GGTAATTGACAAAATGACAC+TGG + chr1_3:65816221-65816240 None:intergenic 35.0%
! GGTTTTTCTTCCCAAACAAA+GGG + chr1_3:65816275-65816294 None:intergenic 35.0%
! AGGTTTTTCTTCCCAAACAA+AGG + chr1_3:65816276-65816295 None:intergenic 35.0%
TTTGTTTGGGAAGAAAAACC+TGG - chr1_3:65816275-65816294 Msa0134270:intron 35.0%
CATCAACATGTGAGAAACTA+GGG + chr1_3:65816310-65816329 None:intergenic 35.0%
TCATCAACATGTGAGAAACT+AGG + chr1_3:65816311-65816330 None:intergenic 35.0%
AGAGAGTTTGCAAGTAAAGA+AGG + chr1_3:65816404-65816423 None:intergenic 35.0%
CTTTCAAGAAAACCAGACTT+TGG + chr1_3:65816584-65816603 None:intergenic 35.0%
!!! CAAAGTCTGGTTTTCTTGAA+AGG - chr1_3:65816582-65816601 Msa0134270:CDS 35.0%
! GGTTTTCTTGAAAGGGATAT+TGG - chr1_3:65816590-65816609 Msa0134270:CDS 35.0%
! TTCAAGTTTGGTGGAACTAA+AGG - chr1_3:65816631-65816650 Msa0134270:CDS 35.0%
! TCAAGTTTGGTGGAACTAAA+GGG - chr1_3:65816632-65816651 Msa0134270:CDS 35.0%
TCGTAGTCTGACTTTGTATT+TGG + chr1_3:65816921-65816940 None:intergenic 35.0%
TGAAGCAGAAGAGTAAATGT+TGG + chr1_3:65817057-65817076 None:intergenic 35.0%
TTGCCTCAATTCCCTTTGTT+TGG - chr1_3:65816261-65816280 Msa0134270:intron 40.0%
! TGCCTCAATTCCCTTTGTTT+GGG - chr1_3:65816262-65816281 Msa0134270:intron 40.0%
TTCCCAAACAAAGGGAATTG+AGG + chr1_3:65816267-65816286 None:intergenic 40.0%
AACATGTGAGAAACTAGGGA+GGG + chr1_3:65816306-65816325 None:intergenic 40.0%
GAGTGAAACCATAACTAGCT+TGG - chr1_3:65816331-65816350 Msa0134270:intron 40.0%
TTCTAGGTCCAAGCTAGTTA+TGG + chr1_3:65816342-65816361 None:intergenic 40.0%
AGTATAAGCAGCTATGAGAC+CGG - chr1_3:65816503-65816522 Msa0134270:intron 40.0%
ACCAGTTAAACTTGACCTTC+CGG + chr1_3:65816525-65816544 None:intergenic 40.0%
TCAAGAAAACCAGACTTTGG+TGG + chr1_3:65816581-65816600 None:intergenic 40.0%
TTGCTTCCTTGACATATCAC+AGG + chr1_3:65816684-65816703 None:intergenic 40.0%
ATGGAACAAGTTACCTTTGG+TGG + chr1_3:65816785-65816804 None:intergenic 40.0%
ACAAGCAGCAGTATCATTGA+AGG - chr1_3:65817127-65817146 Msa0134270:CDS 40.0%
CAAGCAGCAGTATCATTGAA+GGG - chr1_3:65817128-65817147 Msa0134270:CDS 40.0%
!! TGAAGAGAAAGTACTACCCT+AGG - chr1_3:65817155-65817174 Msa0134270:CDS 40.0%
TTGCCTCAATTCCCTTTGTT+TGG - chr1_3:65816261-65816280 Msa0134270:intron 40.0%
! TGCCTCAATTCCCTTTGTTT+GGG - chr1_3:65816262-65816281 Msa0134270:intron 40.0%
TTCCCAAACAAAGGGAATTG+AGG + chr1_3:65816267-65816286 None:intergenic 40.0%
AACATGTGAGAAACTAGGGA+GGG + chr1_3:65816306-65816325 None:intergenic 40.0%
GAGTGAAACCATAACTAGCT+TGG - chr1_3:65816331-65816350 Msa0134270:intron 40.0%
TTCTAGGTCCAAGCTAGTTA+TGG + chr1_3:65816342-65816361 None:intergenic 40.0%
AGTATAAGCAGCTATGAGAC+CGG - chr1_3:65816503-65816522 Msa0134270:intron 40.0%
ACCAGTTAAACTTGACCTTC+CGG + chr1_3:65816525-65816544 None:intergenic 40.0%
TCAAGAAAACCAGACTTTGG+TGG + chr1_3:65816581-65816600 None:intergenic 40.0%
TTGCTTCCTTGACATATCAC+AGG + chr1_3:65816684-65816703 None:intergenic 40.0%
ATGGAACAAGTTACCTTTGG+TGG + chr1_3:65816785-65816804 None:intergenic 40.0%
ACAAGCAGCAGTATCATTGA+AGG - chr1_3:65817127-65817146 Msa0134270:CDS 40.0%
CAAGCAGCAGTATCATTGAA+GGG - chr1_3:65817128-65817147 Msa0134270:CDS 40.0%
!! TGAAGAGAAAGTACTACCCT+AGG - chr1_3:65817155-65817174 Msa0134270:CDS 40.0%
ACATGTGAGAAACTAGGGAG+GGG + chr1_3:65816305-65816324 None:intergenic 45.0%
CAACATGTGAGAAACTAGGG+AGG + chr1_3:65816307-65816326 None:intergenic 45.0%
ACCGGAAGGTCAAGTTTAAC+TGG - chr1_3:65816521-65816540 Msa0134270:intron 45.0%
CCAGACTTTGGTGGAAACAA+AGG + chr1_3:65816572-65816591 None:intergenic 45.0%
! CCTTTGTTTCCACCAAAGTC+TGG - chr1_3:65816569-65816588 Msa0134270:CDS 45.0%
TCAAGGAAGCAACCAACACT+TGG - chr1_3:65816692-65816711 Msa0134270:CDS 45.0%
GAACAAATGGGATCCACCAA+AGG - chr1_3:65816769-65816788 Msa0134270:CDS 45.0%
! ACCACGAGAAAGCAAGCTTT+TGG - chr1_3:65817088-65817107 Msa0134270:CDS 45.0%
! TCCAAAAGCTTGCTTTCTCG+TGG + chr1_3:65817092-65817111 None:intergenic 45.0%
ACATGTGAGAAACTAGGGAG+GGG + chr1_3:65816305-65816324 None:intergenic 45.0%
CAACATGTGAGAAACTAGGG+AGG + chr1_3:65816307-65816326 None:intergenic 45.0%
ACCGGAAGGTCAAGTTTAAC+TGG - chr1_3:65816521-65816540 Msa0134270:intron 45.0%
CCAGACTTTGGTGGAAACAA+AGG + chr1_3:65816572-65816591 None:intergenic 45.0%
! CCTTTGTTTCCACCAAAGTC+TGG - chr1_3:65816569-65816588 Msa0134270:CDS 45.0%
TCAAGGAAGCAACCAACACT+TGG - chr1_3:65816692-65816711 Msa0134270:CDS 45.0%
GAACAAATGGGATCCACCAA+AGG - chr1_3:65816769-65816788 Msa0134270:CDS 45.0%
! ACCACGAGAAAGCAAGCTTT+TGG - chr1_3:65817088-65817107 Msa0134270:CDS 45.0%
! TCCAAAAGCTTGCTTTCTCG+TGG + chr1_3:65817092-65817111 None:intergenic 45.0%
!! AAACTAGGGAGGGGTATTCC+AGG + chr1_3:65816296-65816315 None:intergenic 50.0%
!! TGGAGTTTGCTGTAGTGGCA+TGG + chr1_3:65816453-65816472 None:intergenic 50.0%
!! GAGGATGGAGTTTGCTGTAG+TGG + chr1_3:65816458-65816477 None:intergenic 50.0%
TAAGCAGCTATGAGACCGGA+AGG - chr1_3:65816507-65816526 Msa0134270:intron 50.0%
!! AAACTAGGGAGGGGTATTCC+AGG + chr1_3:65816296-65816315 None:intergenic 50.0%
!! TGGAGTTTGCTGTAGTGGCA+TGG + chr1_3:65816453-65816472 None:intergenic 50.0%
!! GAGGATGGAGTTTGCTGTAG+TGG + chr1_3:65816458-65816477 None:intergenic 50.0%
TAAGCAGCTATGAGACCGGA+AGG - chr1_3:65816507-65816526 Msa0134270:intron 50.0%
TCCATCCTCTCCAGCTTCGT+CGG - chr1_3:65816469-65816488 Msa0134270:intron 55.0%
CTATCCATCTCCGACGAAGC+TGG + chr1_3:65816482-65816501 None:intergenic 55.0%
TCCATCCTCTCCAGCTTCGT+CGG - chr1_3:65816469-65816488 Msa0134270:intron 55.0%
CTATCCATCTCCGACGAAGC+TGG + chr1_3:65816482-65816501 None:intergenic 55.0%
TCCGACGAAGCTGGAGAGGA+TGG + chr1_3:65816473-65816492 None:intergenic 60.0%
CATCTCCGACGAAGCTGGAG+AGG + chr1_3:65816477-65816496 None:intergenic 60.0%
CTCTCCAGCTTCGTCGGAGA+TGG - chr1_3:65816475-65816494 Msa0134270:intron 60.0%
TCCGACGAAGCTGGAGAGGA+TGG + chr1_3:65816473-65816492 None:intergenic 60.0%
CATCTCCGACGAAGCTGGAG+AGG + chr1_3:65816477-65816496 None:intergenic 60.0%
CTCTCCAGCTTCGTCGGAGA+TGG - chr1_3:65816475-65816494 Msa0134270:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 65816122 65817192 65816122 ID=Msa0134270;Name=Msa0134270
chr1_3 mRNA 65816122 65817192 65816122 ID=Msa0134270-mRNA-1;Parent=Msa0134270;Name=Msa0134270-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|258
chr1_3 exon 65816524 65817192 65816524 ID=Msa0134270-mRNA-1:exon:22401;Parent=Msa0134270-mRNA-1
chr1_3 exon 65816122 65816229 65816122 ID=Msa0134270-mRNA-1:exon:22400;Parent=Msa0134270-mRNA-1
chr1_3 CDS 65816524 65817192 65816524 ID=Msa0134270-mRNA-1:cds;Parent=Msa0134270-mRNA-1
chr1_3 CDS 65816122 65816229 65816122 ID=Msa0134270-mRNA-1:cds;Parent=Msa0134270-mRNA-1
Gene Sequence

>Msa0134270

ATGAATGAAAAAGAAAGGAAGAAACATATTAGGGAACCACCTTCAATTCCTTTCATTTGGGAAACAAAACCAGGCATTCCTATAAAAGATTGGAAGCCAGTGTCATTTTGTCAATTACCAAAAACTCCACTAAAACAAATTGCCTCAATTCCCTTTGTTTGGGAAGAAAAACCTGGAATACCCCTCCCTAGTTTCTCACATGTTGATGAGAGTGAAACCATAACTAGCTTGGACCTAGAATCATTTAGTTTTGATACCAATGAATCATTTAACTCAGTTCCTTCTTTACTTGCAAACTCTCTTGTATCATCAACTAAACTCTCTACAGCCATGCCACTACAGCAAACTCCATCCTCTCCAGCTTCGTCGGAGATGGATAGTAGTATAAGCAGCTATGAGACCGGAAGGTCAAGTTTAACTGGTTCTGCTTTTTTGGAATGTCTATTTCCTTTGTTTCCACCAAAGTCTGGTTTTCTTGAAAGGGATATTGGTTACAATGAAAAGTTAAGTTCAAGTTTGGTGGAACTAAAGGGAAATGATTTTGAGAATGAAGATTATACCTGTGATATGTCAAGGAAGCAACCAACACTTGGAGAGTTAATTATGATGAGCAGAAGAAGAAGCTGCATAAGAAAAGCAACTCAAATGAACAAATGGGATCCACCAAAGAAAACCACGAGAAAGCAAGCTTTTGGATGCTTCTCAGTTGTAACAAGCAGCAGTATCATTGAAGGGCTGTTGAAGAGAAAGTACTACCCTAGGCTGAAACTAGTCTAA

Protein sequence

>Msa0134270

MNEKERKKHIREPPSIPFIWETKPGIPIKDWKPVSFCQLPKTPLKQIASIPFVWEEKPGIPLPSFSHVDESETITSLDLESFSFDTNESFNSVPSLLANSLVSSTKLSTAMPLQQTPSSPASSEMDSSISSYETGRSSLTGSAFLECLFPLFPPKSGFLERDIGYNEKLSSSLVELKGNDFENEDYTCDMSRKQPTLGELIMMSRRRSCIRKATQMNKWDPPKKTTRKQAFGCFSVVTSSSIIEGLLKRKYYPRLKLV*