AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0515610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0515610 MtrunA17_Chr3g0124791 98.551 207 3 0 1 207 1 207 1.84e-152 426
Msa0515610 MtrunA17_Chr3g0125031 48.889 180 86 3 34 207 11 190 2.94e-57 184
Msa0515610 MtrunA17_Chr4g0057341 50.286 175 83 2 34 207 17 188 9.68e-52 169
Msa0515610 MtrunA17_Chr6g0478631 29.902 204 114 2 33 207 2 205 1.89e-30 114
Msa0515610 MtrunA17_Chr6g0460841 28.922 204 116 2 33 207 2 205 1.19e-29 112
Msa0515610 MtrunA17_Chr5g0404521 22.613 199 127 5 33 207 413 608 1.82e-13 68.6
Msa0515610 MtrunA17_Chr3g0145801 21.941 237 149 7 2 207 394 625 1.89e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0515610 AT1G77470.1 80.465 215 32 3 1 207 1 213 4.37e-118 340
Msa0515610 AT1G21690.1 50.556 180 83 3 34 207 11 190 4.19e-59 189
Msa0515610 AT1G21690.3 50.556 180 83 3 34 207 11 190 6.73e-59 188
Msa0515610 AT1G21690.4 50.279 179 78 3 34 207 11 183 2.08e-57 184
Msa0515610 AT1G21690.2 50.000 180 72 4 34 207 11 178 7.17e-57 182
Msa0515610 AT1G63160.1 50.857 175 82 2 34 207 17 188 1.99e-51 169
Msa0515610 AT5G27740.1 32.353 204 109 2 33 207 2 205 8.96e-34 124

Find 53 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCTCTACGTAACGCAAAT+TGG 0.189548 3_4:-66883605 None:intergenic
TCAGTATCATAATATGATTT+TGG 0.311016 3_4:+66882457 Msa0515610:CDS
CTTCAAACCCTCTGTAAAAC+TGG 0.350255 3_4:+66883545 Msa0515610:CDS
AATCAAGATGCACCCGGTTT+CGG 0.378472 3_4:+66883794 Msa0515610:CDS
GTGCATCTTGATTGCAGTGC+TGG 0.392350 3_4:-66883784 None:intergenic
CTGCTGTTGTATGGTCCTCC+TGG 0.395722 3_4:+66882383 Msa0515610:CDS
CAAGAGGGGCAAACCGAAAC+CGG 0.396956 3_4:-66883807 None:intergenic
AGCACTCAGAGTCTATCATT+TGG 0.402934 3_4:+66882542 Msa0515610:CDS
GCCACCGAAGGAAGGGTTAC+CGG 0.403122 3_4:-66882149 None:intergenic
ACCTCTACGTAACGCAAATT+GGG 0.410660 3_4:-66883604 None:intergenic
GCACTCAGAGTCTATCATTT+GGG 0.412330 3_4:+66882543 Msa0515610:CDS
TTGTATGGTCCTCCTGGAAC+GGG 0.453099 3_4:+66882389 Msa0515610:CDS
GCCGCCGGTAACCCTTCCTT+CGG 0.453827 3_4:+66882145 Msa0515610:CDS
TTACCCCATCTGCTGTTGTA+TGG 0.471783 3_4:+66882374 Msa0515610:CDS
TCGGTGGCAAAGCTTCGCTA+TGG 0.473250 3_4:+66882164 Msa0515610:CDS
CGGTGGCAAAGCTTCGCTAT+GGG 0.498078 3_4:+66882165 Msa0515610:CDS
GCAACATCGTCGAGGGATTG+AGG 0.509495 3_4:-66882202 None:intergenic
GGCGGAGGAGACTTATCCTA+TGG 0.511189 3_4:+66882087 Msa0515610:CDS
GTTGTATGGTCCTCCTGGAA+CGG 0.512128 3_4:+66882388 Msa0515610:CDS
GCGGTGGCGCGAAAATTATA+CGG 0.514722 3_4:+66882431 Msa0515610:CDS
CTGAATGCTTCAGATGATAG+AGG 0.516669 3_4:+66882482 Msa0515610:CDS
TGAAGCAGATGCCATGACTA+AGG 0.516889 3_4:+66883578 Msa0515610:CDS
GAAGCTTTGCCACCGAAGGA+AGG 0.543002 3_4:-66882157 None:intergenic
TGCATCTTGATTGCAGTGCT+GGG 0.544244 3_4:-66883783 None:intergenic
GCCGGTAACCCTTCCTTCGG+TGG 0.549196 3_4:+66882148 Msa0515610:CDS
GGCAAAACCGTCATTGCCGC+CGG 0.553759 3_4:+66882130 Msa0515610:CDS
AGGGTTACCGGCGGCAATGA+CGG 0.559162 3_4:-66882137 None:intergenic
GAGGACCATACAACAGCAGA+TGG 0.563295 3_4:-66882379 None:intergenic
GGGTTTAATAACCATGGCGG+AGG 0.566041 3_4:+66882072 None:intergenic
TCTGTGAAGTCGATGTCCAT+AGG 0.581778 3_4:-66882103 None:intergenic
AAGCTTTGCCACCGAAGGAA+GGG 0.581985 3_4:-66882156 None:intergenic
AAGAGGGGCAAACCGAAACC+GGG 0.584016 3_4:-66883806 None:intergenic
GTGAGCTGCAACATCGTCGA+GGG 0.599799 3_4:-66882209 None:intergenic
CACTGCAATCAAGATGCACC+CGG 0.601545 3_4:+66883788 Msa0515610:CDS
TAGCGAAGCTTTGCCACCGA+AGG 0.602957 3_4:-66882161 None:intergenic
TGACATGGACAGCATCAAGA+GGG 0.608265 3_4:-66883822 None:intergenic
AAATTGGGCATCCTTAGTCA+TGG 0.619881 3_4:-66883589 None:intergenic
GCCCAATTTGCGTTACGTAG+AGG 0.621180 3_4:+66883603 Msa0515610:CDS
AACATGTTATCAATGCTGAA+AGG 0.623395 3_4:+66883857 Msa0515610:CDS
AGGATAAGTCTCCTCCGCCA+TGG 0.624657 3_4:-66882083 None:intergenic
AGGACCATACAACAGCAGAT+GGG 0.625782 3_4:-66882378 None:intergenic
TACTTGTGTCGACGATGTCG+CGG 0.626145 3_4:-66882231 None:intergenic
GTTTCAGTCTCTCAGTGACA+TGG 0.627168 3_4:-66883837 None:intergenic
GGACCATACAACAGCAGATG+GGG 0.630103 3_4:-66882377 None:intergenic
GACATCGACTTCACAGACAA+GGG 0.631926 3_4:+66882109 Msa0515610:CDS
GGACATCGACTTCACAGACA+AGG 0.636430 3_4:+66882108 Msa0515610:CDS
GTGACATGGACAGCATCAAG+AGG 0.637050 3_4:-66883823 None:intergenic
AGAAATATACAAAGAGCACT+AGG 0.637557 3_4:+66883725 Msa0515610:CDS
AACATCGACGATTCTCGCGG+TGG 0.654620 3_4:+66882415 Msa0515610:CDS
GGTGAGCTGCAACATCGTCG+AGG 0.664996 3_4:-66882210 None:intergenic
GACATGGACAGCATCAAGAG+GGG 0.683891 3_4:-66883821 None:intergenic
ACCGAAGGAAGGGTTACCGG+CGG 0.687119 3_4:-66882146 None:intergenic
TAAAACATCGACGATTCTCG+CGG 0.694200 3_4:+66882412 Msa0515610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAGTTTTTACAAAGTAAA+CGG - chr3_4:66882844-66882863 None:intergenic 15.0%
!!! AAAAGTTTTTACAAAGTAAA+CGG - chr3_4:66882844-66882863 None:intergenic 15.0%
!!! TCAGTATCATAATATGATTT+TGG + chr3_4:66882457-66882476 Msa0515610:CDS 20.0%
!! AATTTCATTAAAGTTGAACA+AGG - chr3_4:66882818-66882837 None:intergenic 20.0%
!!! AAAGTTTTTACAAAGTAAAC+GGG - chr3_4:66882843-66882862 None:intergenic 20.0%
!! AGAAGATAAAATGTTAGTTA+GGG + chr3_4:66882950-66882969 Msa0515610:intron 20.0%
!!! GTAAAACTAACACAAATTTT+AGG + chr3_4:66883079-66883098 Msa0515610:intron 20.0%
!!! AAATGTTTTCACAAAGTAAA+CGG + chr3_4:66883115-66883134 Msa0515610:intron 20.0%
!! ATAAAAGTGAAACAAGAATT+TGG + chr3_4:66883443-66883462 Msa0515610:intron 20.0%
!! TAAAAGTGAAACAAGAATTT+GGG + chr3_4:66883444-66883463 Msa0515610:intron 20.0%
!!! TCAGTATCATAATATGATTT+TGG + chr3_4:66882457-66882476 Msa0515610:CDS 20.0%
!! AATTTCATTAAAGTTGAACA+AGG - chr3_4:66882818-66882837 None:intergenic 20.0%
!!! AAAGTTTTTACAAAGTAAAC+GGG - chr3_4:66882843-66882862 None:intergenic 20.0%
!! AGAAGATAAAATGTTAGTTA+GGG + chr3_4:66882950-66882969 Msa0515610:intron 20.0%
!!! GTAAAACTAACACAAATTTT+AGG + chr3_4:66883079-66883098 Msa0515610:intron 20.0%
!!! AAATGTTTTCACAAAGTAAA+CGG + chr3_4:66883115-66883134 Msa0515610:intron 20.0%
!! ATAAAAGTGAAACAAGAATT+TGG + chr3_4:66883443-66883462 Msa0515610:intron 20.0%
!! TAAAAGTGAAACAAGAATTT+GGG + chr3_4:66883444-66883463 Msa0515610:intron 20.0%
!! TTTTTGTGTGTTTAGTTGAT+AGG + chr3_4:66882333-66882352 Msa0515610:intron 25.0%
! ACATGCAAATTTACTACATA+AGG - chr3_4:66882663-66882682 None:intergenic 25.0%
! AAATTTGCATGTCAAATTTG+AGG + chr3_4:66882671-66882690 Msa0515610:intron 25.0%
!!! TTTGACTTGATTTGTTGTTA+TGG + chr3_4:66882697-66882716 Msa0515610:intron 25.0%
!! ATTTAACTTTGTGTCGAATA+AGG + chr3_4:66882756-66882775 Msa0515610:intron 25.0%
! GAGAAGATAAAATGTTAGTT+AGG + chr3_4:66882949-66882968 Msa0515610:intron 25.0%
!! AATACTGAAAACAGTTCTTT+TGG + chr3_4:66882989-66883008 Msa0515610:intron 25.0%
!! AATGTTTTCACAAAGTAAAC+GGG + chr3_4:66883116-66883135 Msa0515610:intron 25.0%
! TAAACATTAAAGACGATACA+AGG + chr3_4:66883292-66883311 Msa0515610:intron 25.0%
!! TTTGATAGTTAGAAAAGTTG+AGG - chr3_4:66883506-66883525 None:intergenic 25.0%
!!! AAGAATATGAAGAGTGTTAT+AGG - chr3_4:66883690-66883709 None:intergenic 25.0%
!! TTTTTGTGTGTTTAGTTGAT+AGG + chr3_4:66882333-66882352 Msa0515610:intron 25.0%
! ACATGCAAATTTACTACATA+AGG - chr3_4:66882663-66882682 None:intergenic 25.0%
! AAATTTGCATGTCAAATTTG+AGG + chr3_4:66882671-66882690 Msa0515610:intron 25.0%
!!! TTTGACTTGATTTGTTGTTA+TGG + chr3_4:66882697-66882716 Msa0515610:intron 25.0%
!! ATTTAACTTTGTGTCGAATA+AGG + chr3_4:66882756-66882775 Msa0515610:intron 25.0%
! GAGAAGATAAAATGTTAGTT+AGG + chr3_4:66882949-66882968 Msa0515610:intron 25.0%
!! AATACTGAAAACAGTTCTTT+TGG + chr3_4:66882989-66883008 Msa0515610:intron 25.0%
!! AATGTTTTCACAAAGTAAAC+GGG + chr3_4:66883116-66883135 Msa0515610:intron 25.0%
! TAAACATTAAAGACGATACA+AGG + chr3_4:66883292-66883311 Msa0515610:intron 25.0%
!! TTTGATAGTTAGAAAAGTTG+AGG - chr3_4:66883506-66883525 None:intergenic 25.0%
!!! AAGAATATGAAGAGTGTTAT+AGG - chr3_4:66883690-66883709 None:intergenic 25.0%
ATAAACCCTAGAAATGAAAG+GGG - chr3_4:66882279-66882298 None:intergenic 30.0%
GATAAACCCTAGAAATGAAA+GGG - chr3_4:66882280-66882299 None:intergenic 30.0%
TGATAAACCCTAGAAATGAA+AGG - chr3_4:66882281-66882300 None:intergenic 30.0%
! TCTAGGGTTTATCATTTCTT+CGG + chr3_4:66882287-66882306 Msa0515610:intron 30.0%
! TTTTGTGACTGCATAATAGA+TGG + chr3_4:66882615-66882634 Msa0515610:intron 30.0%
TTAAATCGAAGCACATTTCA+CGG - chr3_4:66882742-66882761 None:intergenic 30.0%
! TTTGAAATGAACCATTGTGA+TGG + chr3_4:66882925-66882944 Msa0515610:intron 30.0%
TTGAAATGAACCATTGTGAT+GGG + chr3_4:66882926-66882945 Msa0515610:intron 30.0%
! AGTTCTTTTGGCATTTTCAT+TGG + chr3_4:66883001-66883020 Msa0515610:intron 30.0%
! ATGAACAAGTGTGCATATTT+TGG - chr3_4:66883029-66883048 None:intergenic 30.0%
!!! GTTAGTTTTACTTGCTAACA+AGG - chr3_4:66883070-66883089 None:intergenic 30.0%
! ATGTTTTCACAAAGTAAACG+GGG + chr3_4:66883117-66883136 Msa0515610:intron 30.0%
TCTATCTTCTTTCTGAATAC+CGG + chr3_4:66883212-66883231 Msa0515610:intron 30.0%
TTTCTGAATACCGGATAATT+CGG + chr3_4:66883221-66883240 Msa0515610:intron 30.0%
ATAAAAATGCCCGAATTATC+CGG - chr3_4:66883234-66883253 None:intergenic 30.0%
!! AGTGTTGATATCAGCTTAAA+GGG - chr3_4:66883272-66883291 None:intergenic 30.0%
!! AAGTGTTGATATCAGCTTAA+AGG - chr3_4:66883273-66883292 None:intergenic 30.0%
ATCATGTCTGAAAATTGACA+TGG - chr3_4:66883340-66883359 None:intergenic 30.0%
! ATGTCAATTTTCAGACATGA+TGG + chr3_4:66883339-66883358 Msa0515610:intron 30.0%
!! AGAAATATACAAAGAGCACT+AGG + chr3_4:66883725-66883744 Msa0515610:CDS 30.0%
ATAAACCCTAGAAATGAAAG+GGG - chr3_4:66882279-66882298 None:intergenic 30.0%
GATAAACCCTAGAAATGAAA+GGG - chr3_4:66882280-66882299 None:intergenic 30.0%
TGATAAACCCTAGAAATGAA+AGG - chr3_4:66882281-66882300 None:intergenic 30.0%
! TCTAGGGTTTATCATTTCTT+CGG + chr3_4:66882287-66882306 Msa0515610:intron 30.0%
! TTTTGTGACTGCATAATAGA+TGG + chr3_4:66882615-66882634 Msa0515610:intron 30.0%
TTAAATCGAAGCACATTTCA+CGG - chr3_4:66882742-66882761 None:intergenic 30.0%
! TTTGAAATGAACCATTGTGA+TGG + chr3_4:66882925-66882944 Msa0515610:intron 30.0%
TTGAAATGAACCATTGTGAT+GGG + chr3_4:66882926-66882945 Msa0515610:intron 30.0%
! AGTTCTTTTGGCATTTTCAT+TGG + chr3_4:66883001-66883020 Msa0515610:intron 30.0%
! ATGAACAAGTGTGCATATTT+TGG - chr3_4:66883029-66883048 None:intergenic 30.0%
!!! GTTAGTTTTACTTGCTAACA+AGG - chr3_4:66883070-66883089 None:intergenic 30.0%
! ATGTTTTCACAAAGTAAACG+GGG + chr3_4:66883117-66883136 Msa0515610:intron 30.0%
TCTATCTTCTTTCTGAATAC+CGG + chr3_4:66883212-66883231 Msa0515610:intron 30.0%
TTTCTGAATACCGGATAATT+CGG + chr3_4:66883221-66883240 Msa0515610:intron 30.0%
ATAAAAATGCCCGAATTATC+CGG - chr3_4:66883234-66883253 None:intergenic 30.0%
!! AGTGTTGATATCAGCTTAAA+GGG - chr3_4:66883272-66883291 None:intergenic 30.0%
!! AAGTGTTGATATCAGCTTAA+AGG - chr3_4:66883273-66883292 None:intergenic 30.0%
ATCATGTCTGAAAATTGACA+TGG - chr3_4:66883340-66883359 None:intergenic 30.0%
! ATGTCAATTTTCAGACATGA+TGG + chr3_4:66883339-66883358 Msa0515610:intron 30.0%
!! AGAAATATACAAAGAGCACT+AGG + chr3_4:66883725-66883744 Msa0515610:CDS 30.0%
TAACTTCCCCTTTCATTTCT+AGG + chr3_4:66882270-66882289 Msa0515610:intron 35.0%
AACTTCCCCTTTCATTTCTA+GGG + chr3_4:66882271-66882290 Msa0515610:intron 35.0%
! TTCCTAACTTCCTTTTGTGT+GGG + chr3_4:66882576-66882595 Msa0515610:intron 35.0%
! ACAAGGAAAGCATGGATAAA+TGG - chr3_4:66882801-66882820 None:intergenic 35.0%
AAAGTTGAACAAGGAAAGCA+TGG - chr3_4:66882809-66882828 None:intergenic 35.0%
TGAAATGAACCATTGTGATG+GGG + chr3_4:66882927-66882946 Msa0515610:intron 35.0%
TTCTGAATACCGGATAATTC+GGG + chr3_4:66883222-66883241 Msa0515610:intron 35.0%
! GTGTTGATATCAGCTTAAAG+GGG - chr3_4:66883271-66883290 None:intergenic 35.0%
TGAAAATTGACATGGACATG+AGG - chr3_4:66883332-66883351 None:intergenic 35.0%
! AACAAGACCAGTTTTACAGA+GGG - chr3_4:66883555-66883574 None:intergenic 35.0%
! TAACAAGACCAGTTTTACAG+AGG - chr3_4:66883556-66883575 None:intergenic 35.0%
AGTGTTATAGGTCAAGAAAC+TGG - chr3_4:66883678-66883697 None:intergenic 35.0%
TAACTTCCCCTTTCATTTCT+AGG + chr3_4:66882270-66882289 Msa0515610:intron 35.0%
AACTTCCCCTTTCATTTCTA+GGG + chr3_4:66882271-66882290 Msa0515610:intron 35.0%
! TTCCTAACTTCCTTTTGTGT+GGG + chr3_4:66882576-66882595 Msa0515610:intron 35.0%
! ACAAGGAAAGCATGGATAAA+TGG - chr3_4:66882801-66882820 None:intergenic 35.0%
AAAGTTGAACAAGGAAAGCA+TGG - chr3_4:66882809-66882828 None:intergenic 35.0%
TGAAATGAACCATTGTGATG+GGG + chr3_4:66882927-66882946 Msa0515610:intron 35.0%
TTCTGAATACCGGATAATTC+GGG + chr3_4:66883222-66883241 Msa0515610:intron 35.0%
! GTGTTGATATCAGCTTAAAG+GGG - chr3_4:66883271-66883290 None:intergenic 35.0%
TGAAAATTGACATGGACATG+AGG - chr3_4:66883332-66883351 None:intergenic 35.0%
! AACAAGACCAGTTTTACAGA+GGG - chr3_4:66883555-66883574 None:intergenic 35.0%
! TAACAAGACCAGTTTTACAG+AGG - chr3_4:66883556-66883575 None:intergenic 35.0%
AGTGTTATAGGTCAAGAAAC+TGG - chr3_4:66883678-66883697 None:intergenic 35.0%
ATGAAAGGGGAAGTTAGAGA+GGG - chr3_4:66882266-66882285 None:intergenic 40.0%
AATGAAAGGGGAAGTTAGAG+AGG - chr3_4:66882267-66882286 None:intergenic 40.0%
TAAAACATCGACGATTCTCG+CGG + chr3_4:66882412-66882431 Msa0515610:CDS 40.0%
CTGAATGCTTCAGATGATAG+AGG + chr3_4:66882482-66882501 Msa0515610:CDS 40.0%
AGCACTCAGAGTCTATCATT+TGG + chr3_4:66882542-66882561 Msa0515610:CDS 40.0%
GCACTCAGAGTCTATCATTT+GGG + chr3_4:66882543-66882562 Msa0515610:CDS 40.0%
! CTTCCTAACTTCCTTTTGTG+TGG + chr3_4:66882575-66882594 Msa0515610:intron 40.0%
CAGTAAAACACCCACACAAA+AGG - chr3_4:66882589-66882608 None:intergenic 40.0%
TTATCTTCTCCCCATCACAA+TGG - chr3_4:66882939-66882958 None:intergenic 40.0%
TATCATTCCATCAGCCAATG+CGG + chr3_4:66883179-66883198 Msa0515610:intron 40.0%
TAGATATAGAACCTCCGCAT+TGG - chr3_4:66883196-66883215 None:intergenic 40.0%
AAAGCACATGCAAGCAGAAA+GGG - chr3_4:66883405-66883424 None:intergenic 40.0%
! AAAAGCACATGCAAGCAGAA+AGG - chr3_4:66883406-66883425 None:intergenic 40.0%
! TGCTTGCATGTGCTTTTGAT+TGG + chr3_4:66883409-66883428 Msa0515610:intron 40.0%
!! GCTTGCATGTGCTTTTGATT+GGG + chr3_4:66883410-66883429 Msa0515610:intron 40.0%
CTTCAAACCCTCTGTAAAAC+TGG + chr3_4:66883545-66883564 Msa0515610:CDS 40.0%
AAATTGGGCATCCTTAGTCA+TGG - chr3_4:66883592-66883611 None:intergenic 40.0%
ACCTCTACGTAACGCAAATT+GGG - chr3_4:66883607-66883626 None:intergenic 40.0%
ATGAAAGGGGAAGTTAGAGA+GGG - chr3_4:66882266-66882285 None:intergenic 40.0%
AATGAAAGGGGAAGTTAGAG+AGG - chr3_4:66882267-66882286 None:intergenic 40.0%
TAAAACATCGACGATTCTCG+CGG + chr3_4:66882412-66882431 Msa0515610:CDS 40.0%
CTGAATGCTTCAGATGATAG+AGG + chr3_4:66882482-66882501 Msa0515610:CDS 40.0%
AGCACTCAGAGTCTATCATT+TGG + chr3_4:66882542-66882561 Msa0515610:CDS 40.0%
GCACTCAGAGTCTATCATTT+GGG + chr3_4:66882543-66882562 Msa0515610:CDS 40.0%
! CTTCCTAACTTCCTTTTGTG+TGG + chr3_4:66882575-66882594 Msa0515610:intron 40.0%
CAGTAAAACACCCACACAAA+AGG - chr3_4:66882589-66882608 None:intergenic 40.0%
TTATCTTCTCCCCATCACAA+TGG - chr3_4:66882939-66882958 None:intergenic 40.0%
TATCATTCCATCAGCCAATG+CGG + chr3_4:66883179-66883198 Msa0515610:intron 40.0%
TAGATATAGAACCTCCGCAT+TGG - chr3_4:66883196-66883215 None:intergenic 40.0%
AAAGCACATGCAAGCAGAAA+GGG - chr3_4:66883405-66883424 None:intergenic 40.0%
! AAAAGCACATGCAAGCAGAA+AGG - chr3_4:66883406-66883425 None:intergenic 40.0%
! TGCTTGCATGTGCTTTTGAT+TGG + chr3_4:66883409-66883428 Msa0515610:intron 40.0%
!! GCTTGCATGTGCTTTTGATT+GGG + chr3_4:66883410-66883429 Msa0515610:intron 40.0%
CTTCAAACCCTCTGTAAAAC+TGG + chr3_4:66883545-66883564 Msa0515610:CDS 40.0%
AAATTGGGCATCCTTAGTCA+TGG - chr3_4:66883592-66883611 None:intergenic 40.0%
ACCTCTACGTAACGCAAATT+GGG - chr3_4:66883607-66883626 None:intergenic 40.0%
TCTGTGAAGTCGATGTCCAT+AGG - chr3_4:66882106-66882125 None:intergenic 45.0%
!! GACATCGACTTCACAGACAA+GGG + chr3_4:66882109-66882128 Msa0515610:CDS 45.0%
TTACCCCATCTGCTGTTGTA+TGG + chr3_4:66882374-66882393 Msa0515610:CDS 45.0%
AGGACCATACAACAGCAGAT+GGG - chr3_4:66882381-66882400 None:intergenic 45.0%
CACCCACACAAAAGGAAGTT+AGG - chr3_4:66882581-66882600 None:intergenic 45.0%
TCGAAGCACATTTCACGGTA+TGG - chr3_4:66882737-66882756 None:intergenic 45.0%
CGCTAATTACTGCTGAACTC+TGG - chr3_4:66883143-66883162 None:intergenic 45.0%
GAGTTCAGCAGTAATTAGCG+TGG + chr3_4:66883143-66883162 Msa0515610:intron 45.0%
TGAAGCAGATGCCATGACTA+AGG + chr3_4:66883578-66883597 Msa0515610:CDS 45.0%
CACCTCTACGTAACGCAAAT+TGG - chr3_4:66883608-66883627 None:intergenic 45.0%
TGCATCTTGATTGCAGTGCT+GGG - chr3_4:66883786-66883805 None:intergenic 45.0%
AATCAAGATGCACCCGGTTT+CGG + chr3_4:66883794-66883813 Msa0515610:CDS 45.0%
TGACATGGACAGCATCAAGA+GGG - chr3_4:66883825-66883844 None:intergenic 45.0%
GTTTCAGTCTCTCAGTGACA+TGG - chr3_4:66883840-66883859 None:intergenic 45.0%
TCTGTGAAGTCGATGTCCAT+AGG - chr3_4:66882106-66882125 None:intergenic 45.0%
!! GACATCGACTTCACAGACAA+GGG + chr3_4:66882109-66882128 Msa0515610:CDS 45.0%
TTACCCCATCTGCTGTTGTA+TGG + chr3_4:66882374-66882393 Msa0515610:CDS 45.0%
AGGACCATACAACAGCAGAT+GGG - chr3_4:66882381-66882400 None:intergenic 45.0%
CACCCACACAAAAGGAAGTT+AGG - chr3_4:66882581-66882600 None:intergenic 45.0%
TCGAAGCACATTTCACGGTA+TGG - chr3_4:66882737-66882756 None:intergenic 45.0%
CGCTAATTACTGCTGAACTC+TGG - chr3_4:66883143-66883162 None:intergenic 45.0%
GAGTTCAGCAGTAATTAGCG+TGG + chr3_4:66883143-66883162 Msa0515610:intron 45.0%
TGAAGCAGATGCCATGACTA+AGG + chr3_4:66883578-66883597 Msa0515610:CDS 45.0%
CACCTCTACGTAACGCAAAT+TGG - chr3_4:66883608-66883627 None:intergenic 45.0%
TGCATCTTGATTGCAGTGCT+GGG - chr3_4:66883786-66883805 None:intergenic 45.0%
AATCAAGATGCACCCGGTTT+CGG + chr3_4:66883794-66883813 Msa0515610:CDS 45.0%
TGACATGGACAGCATCAAGA+GGG - chr3_4:66883825-66883844 None:intergenic 45.0%
GTTTCAGTCTCTCAGTGACA+TGG - chr3_4:66883840-66883859 None:intergenic 45.0%
!! GGACATCGACTTCACAGACA+AGG + chr3_4:66882108-66882127 Msa0515610:CDS 50.0%
AAGCTTTGCCACCGAAGGAA+GGG - chr3_4:66882159-66882178 None:intergenic 50.0%
! TACTTGTGTCGACGATGTCG+CGG - chr3_4:66882234-66882253 None:intergenic 50.0%
GGGGAAGTTAGAGAGGGAAA+GGG - chr3_4:66882260-66882279 None:intergenic 50.0%
AGGGGAAGTTAGAGAGGGAA+AGG - chr3_4:66882261-66882280 None:intergenic 50.0%
GGACCATACAACAGCAGATG+GGG - chr3_4:66882380-66882399 None:intergenic 50.0%
GAGGACCATACAACAGCAGA+TGG - chr3_4:66882382-66882401 None:intergenic 50.0%
GTTGTATGGTCCTCCTGGAA+CGG + chr3_4:66882388-66882407 Msa0515610:CDS 50.0%
TTGTATGGTCCTCCTGGAAC+GGG + chr3_4:66882389-66882408 Msa0515610:CDS 50.0%
! GATGTTTTACCCGTTCCAGG+AGG - chr3_4:66882401-66882420 None:intergenic 50.0%
! GTCGATGTTTTACCCGTTCC+AGG - chr3_4:66882404-66882423 None:intergenic 50.0%
GCGGTGGCGCGAAAATTATA+CGG + chr3_4:66882431-66882450 Msa0515610:CDS 50.0%
GCCCAATTTGCGTTACGTAG+AGG + chr3_4:66883603-66883622 Msa0515610:CDS 50.0%
GTGCATCTTGATTGCAGTGC+TGG - chr3_4:66883787-66883806 None:intergenic 50.0%
CACTGCAATCAAGATGCACC+CGG + chr3_4:66883788-66883807 Msa0515610:CDS 50.0%
GACATGGACAGCATCAAGAG+GGG - chr3_4:66883824-66883843 None:intergenic 50.0%
GTGACATGGACAGCATCAAG+AGG - chr3_4:66883826-66883845 None:intergenic 50.0%
!! GGACATCGACTTCACAGACA+AGG + chr3_4:66882108-66882127 Msa0515610:CDS 50.0%
AAGCTTTGCCACCGAAGGAA+GGG - chr3_4:66882159-66882178 None:intergenic 50.0%
! TACTTGTGTCGACGATGTCG+CGG - chr3_4:66882234-66882253 None:intergenic 50.0%
GGGGAAGTTAGAGAGGGAAA+GGG - chr3_4:66882260-66882279 None:intergenic 50.0%
AGGGGAAGTTAGAGAGGGAA+AGG - chr3_4:66882261-66882280 None:intergenic 50.0%
GGACCATACAACAGCAGATG+GGG - chr3_4:66882380-66882399 None:intergenic 50.0%
GAGGACCATACAACAGCAGA+TGG - chr3_4:66882382-66882401 None:intergenic 50.0%
GTTGTATGGTCCTCCTGGAA+CGG + chr3_4:66882388-66882407 Msa0515610:CDS 50.0%
TTGTATGGTCCTCCTGGAAC+GGG + chr3_4:66882389-66882408 Msa0515610:CDS 50.0%
! GATGTTTTACCCGTTCCAGG+AGG - chr3_4:66882401-66882420 None:intergenic 50.0%
! GTCGATGTTTTACCCGTTCC+AGG - chr3_4:66882404-66882423 None:intergenic 50.0%
GCGGTGGCGCGAAAATTATA+CGG + chr3_4:66882431-66882450 Msa0515610:CDS 50.0%
GCCCAATTTGCGTTACGTAG+AGG + chr3_4:66883603-66883622 Msa0515610:CDS 50.0%
GTGCATCTTGATTGCAGTGC+TGG - chr3_4:66883787-66883806 None:intergenic 50.0%
CACTGCAATCAAGATGCACC+CGG + chr3_4:66883788-66883807 Msa0515610:CDS 50.0%
GACATGGACAGCATCAAGAG+GGG - chr3_4:66883824-66883843 None:intergenic 50.0%
GTGACATGGACAGCATCAAG+AGG - chr3_4:66883826-66883845 None:intergenic 50.0%
GGCGGAGGAGACTTATCCTA+TGG + chr3_4:66882087-66882106 Msa0515610:CDS 55.0%
GAAGCTTTGCCACCGAAGGA+AGG - chr3_4:66882160-66882179 None:intergenic 55.0%
TAGCGAAGCTTTGCCACCGA+AGG - chr3_4:66882164-66882183 None:intergenic 55.0%
TCGGTGGCAAAGCTTCGCTA+TGG + chr3_4:66882164-66882183 Msa0515610:CDS 55.0%
CGGTGGCAAAGCTTCGCTAT+GGG + chr3_4:66882165-66882184 Msa0515610:CDS 55.0%
GCAACATCGTCGAGGGATTG+AGG - chr3_4:66882205-66882224 None:intergenic 55.0%
GTGAGCTGCAACATCGTCGA+GGG - chr3_4:66882212-66882231 None:intergenic 55.0%
CTGCTGTTGTATGGTCCTCC+TGG + chr3_4:66882383-66882402 Msa0515610:CDS 55.0%
AACATCGACGATTCTCGCGG+TGG + chr3_4:66882415-66882434 Msa0515610:CDS 55.0%
CATTCCATCAGCCAATGCGG+AGG + chr3_4:66883182-66883201 Msa0515610:intron 55.0%
!! AGAACCTCCGCATTGGCTGA+TGG - chr3_4:66883189-66883208 None:intergenic 55.0%
AAGAGGGGCAAACCGAAACC+GGG - chr3_4:66883809-66883828 None:intergenic 55.0%
CAAGAGGGGCAAACCGAAAC+CGG - chr3_4:66883810-66883829 None:intergenic 55.0%
GGCGGAGGAGACTTATCCTA+TGG + chr3_4:66882087-66882106 Msa0515610:CDS 55.0%
GAAGCTTTGCCACCGAAGGA+AGG - chr3_4:66882160-66882179 None:intergenic 55.0%
TAGCGAAGCTTTGCCACCGA+AGG - chr3_4:66882164-66882183 None:intergenic 55.0%
TCGGTGGCAAAGCTTCGCTA+TGG + chr3_4:66882164-66882183 Msa0515610:CDS 55.0%
CGGTGGCAAAGCTTCGCTAT+GGG + chr3_4:66882165-66882184 Msa0515610:CDS 55.0%
GCAACATCGTCGAGGGATTG+AGG - chr3_4:66882205-66882224 None:intergenic 55.0%
GTGAGCTGCAACATCGTCGA+GGG - chr3_4:66882212-66882231 None:intergenic 55.0%
CTGCTGTTGTATGGTCCTCC+TGG + chr3_4:66882383-66882402 Msa0515610:CDS 55.0%
AACATCGACGATTCTCGCGG+TGG + chr3_4:66882415-66882434 Msa0515610:CDS 55.0%
CATTCCATCAGCCAATGCGG+AGG + chr3_4:66883182-66883201 Msa0515610:intron 55.0%
!! AGAACCTCCGCATTGGCTGA+TGG - chr3_4:66883189-66883208 None:intergenic 55.0%
AAGAGGGGCAAACCGAAACC+GGG - chr3_4:66883809-66883828 None:intergenic 55.0%
CAAGAGGGGCAAACCGAAAC+CGG - chr3_4:66883810-66883829 None:intergenic 55.0%
GGCAAAACCGTCATTGCCGC+CGG + chr3_4:66882130-66882149 Msa0515610:CDS 60.0%
AGGGTTACCGGCGGCAATGA+CGG - chr3_4:66882140-66882159 None:intergenic 60.0%
ACCGAAGGAAGGGTTACCGG+CGG - chr3_4:66882149-66882168 None:intergenic 60.0%
GCCACCGAAGGAAGGGTTAC+CGG - chr3_4:66882152-66882171 None:intergenic 60.0%
GGTGAGCTGCAACATCGTCG+AGG - chr3_4:66882213-66882232 None:intergenic 60.0%
GGCAAAACCGTCATTGCCGC+CGG + chr3_4:66882130-66882149 Msa0515610:CDS 60.0%
AGGGTTACCGGCGGCAATGA+CGG - chr3_4:66882140-66882159 None:intergenic 60.0%
ACCGAAGGAAGGGTTACCGG+CGG - chr3_4:66882149-66882168 None:intergenic 60.0%
GCCACCGAAGGAAGGGTTAC+CGG - chr3_4:66882152-66882171 None:intergenic 60.0%
GGTGAGCTGCAACATCGTCG+AGG - chr3_4:66882213-66882232 None:intergenic 60.0%
GCCGCCGGTAACCCTTCCTT+CGG + chr3_4:66882145-66882164 Msa0515610:CDS 65.0%
GCCGGTAACCCTTCCTTCGG+TGG + chr3_4:66882148-66882167 Msa0515610:CDS 65.0%
GCCGCCGGTAACCCTTCCTT+CGG + chr3_4:66882145-66882164 Msa0515610:CDS 65.0%
GCCGGTAACCCTTCCTTCGG+TGG + chr3_4:66882148-66882167 Msa0515610:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 66882085 66883876 66882085 ID=Msa0515610;Name=Msa0515610
chr3_4 mRNA 66882085 66883876 66882085 ID=Msa0515610-mRNA-1;Parent=Msa0515610;Name=Msa0515610-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|0.75|4|0|207
chr3_4 exon 66882085 66882250 66882085 ID=Msa0515610-mRNA-1:exon:17300;Parent=Msa0515610-mRNA-1
chr3_4 exon 66882348 66882564 66882348 ID=Msa0515610-mRNA-1:exon:17301;Parent=Msa0515610-mRNA-1
chr3_4 exon 66883545 66883624 66883545 ID=Msa0515610-mRNA-1:exon:17302;Parent=Msa0515610-mRNA-1
chr3_4 exon 66883719 66883876 66883719 ID=Msa0515610-mRNA-1:exon:17303;Parent=Msa0515610-mRNA-1
chr3_4 CDS 66882085 66882250 66882085 ID=Msa0515610-mRNA-1:cds;Parent=Msa0515610-mRNA-1
chr3_4 CDS 66882348 66882564 66882348 ID=Msa0515610-mRNA-1:cds;Parent=Msa0515610-mRNA-1
chr3_4 CDS 66883545 66883624 66883545 ID=Msa0515610-mRNA-1:cds;Parent=Msa0515610-mRNA-1
chr3_4 CDS 66883719 66883876 66883719 ID=Msa0515610-mRNA-1:cds;Parent=Msa0515610-mRNA-1
Gene Sequence

>Msa0515610

ATGGCGGAGGAGACTTATCCTATGGACATCGACTTCACAGACAAGGGCAAAACCGTCATTGCCGCCGGTAACCCTTCCTTCGGTGGCAAAGCTTCGCTATGGGTTGAAAAGTATCGTCCTCAATCCCTCGACGATGTTGCAGCTCACCGCGACATCGTCGACACAATTGATAGGTTGACTACTGAGAATAGATTACCCCATCTGCTGTTGTATGGTCCTCCTGGAACGGGTAAAACATCGACGATTCTCGCGGTGGCGCGAAAATTATACGGTGCTCAGTATCATAATATGATTTTGGAACTGAATGCTTCAGATGATAGAGGAATTGATGTAGTTAGACAGCAGATTCAAGATTTTGCTAGCACTCAGAGTCTATCATTTGGCTTCAAACCCTCTGTAAAACTGGTCTTGTTAGATGAAGCAGATGCCATGACTAAGGATGCCCAATTTGCGTTACGTAGAGTCATCGAGAAATATACAAAGAGCACTAGGTTTGCACTTATCTGTAATCATGTAAACAAGATTATCCCAGCACTGCAATCAAGATGCACCCGGTTTCGGTTTGCCCCTCTTGATGCTGTCCATGTCACTGAGAGACTGAAACATGTTATCAATGCTGAA

Protein sequence

>Msa0515610

MAEETYPMDIDFTDKGKTVIAAGNPSFGGKASLWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSLSFGFKPSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVINAE