Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0515610 | KEH35309.1 | 98.551 | 207 | 3 | 0 | 1 | 207 | 1 | 207 | 9.60e-149 | 425 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0515610 | sp|Q9CAQ8|RFC5_ARATH | 80.465 | 215 | 32 | 3 | 1 | 207 | 1 | 213 | 4.30e-117 | 340 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0515610 | A0A072UZU6 | 98.551 | 207 | 3 | 0 | 1 | 207 | 1 | 207 | 4.59e-149 | 425 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0020540 | Msa0515610 | 0.804611 | 1.987980e-49 | -8.615850e-47 |
Msa0159620 | Msa0515610 | 0.801500 | 8.745024e-49 | -8.615850e-47 |
Msa0421750 | Msa0515610 | 0.812554 | 3.999400e-51 | -8.615850e-47 |
Msa0456670 | Msa0515610 | 0.803725 | 3.038953e-49 | -8.615850e-47 |
Msa0467690 | Msa0515610 | 0.805613 | 1.226585e-49 | -8.615850e-47 |
Msa0514020 | Msa0515610 | 0.819557 | 1.091245e-52 | -8.615850e-47 |
Msa0515610 | Msa0532050 | 0.804944 | 1.693945e-49 | -8.615850e-47 |
Msa0515610 | Msa0532160 | 0.850781 | 1.359539e-60 | -8.615850e-47 |
Msa0515610 | Msa0572830 | 0.807342 | 5.297855e-50 | -8.615850e-47 |
Msa0515610 | Msa0577280 | 0.804517 | 2.080212e-49 | -8.615850e-47 |
Msa0515610 | Msa0577330 | 0.807201 | 5.673282e-50 | -8.615850e-47 |
Msa0515610 | Msa0606100 | 0.806795 | 6.916445e-50 | -8.615850e-47 |
Msa0515610 | Msa0615630 | 0.825496 | 4.542354e-54 | -8.615850e-47 |
Msa0515610 | Msa0622920 | 0.806621 | 7.526309e-50 | -8.615850e-47 |
Msa0515610 | Msa0648040 | 0.811614 | 6.412247e-51 | -8.615850e-47 |
Msa0515610 | Msa0690740 | 0.814459 | 1.523941e-51 | -8.615850e-47 |
Msa0515610 | Msa0701890 | 0.827524 | 1.491747e-54 | -8.615850e-47 |
Msa0515610 | Msa0728770 | 0.812691 | 3.732823e-51 | -8.615850e-47 |
Msa0515610 | Msa0769700 | 0.804606 | 1.993091e-49 | -8.615850e-47 |
Msa0515610 | Msa1127280 | 0.822530 | 2.255080e-53 | -8.615850e-47 |
Msa0515610 | Msa1163180 | 0.810522 | 1.105742e-50 | -8.615850e-47 |
Msa0515610 | Msa1165480 | 0.820093 | 8.228348e-53 | -8.615850e-47 |
Msa0515610 | Msa1201780 | 0.804507 | 2.090128e-49 | -8.615850e-47 |
Msa0515610 | Msa1218820 | 0.802658 | 5.053515e-49 | -8.615850e-47 |
Msa0515610 | Msa1294790 | 0.809018 | 2.328367e-50 | -8.615850e-47 |
Msa0515610 | Msa1339170 | 0.811255 | 7.669635e-51 | -8.615850e-47 |
Msa0515610 | Msa1393560 | 0.802961 | 4.375724e-49 | -8.615850e-47 |
Msa0515610 | Msa1399190 | 0.811162 | 8.037147e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0515610 | MtrunA17_Chr3g0124791 | 98.551 | 207 | 3 | 0 | 1 | 207 | 1 | 207 | 1.84e-152 | 426 |
Msa0515610 | MtrunA17_Chr3g0125031 | 48.889 | 180 | 86 | 3 | 34 | 207 | 11 | 190 | 2.94e-57 | 184 |
Msa0515610 | MtrunA17_Chr4g0057341 | 50.286 | 175 | 83 | 2 | 34 | 207 | 17 | 188 | 9.68e-52 | 169 |
Msa0515610 | MtrunA17_Chr6g0478631 | 29.902 | 204 | 114 | 2 | 33 | 207 | 2 | 205 | 1.89e-30 | 114 |
Msa0515610 | MtrunA17_Chr6g0460841 | 28.922 | 204 | 116 | 2 | 33 | 207 | 2 | 205 | 1.19e-29 | 112 |
Msa0515610 | MtrunA17_Chr5g0404521 | 22.613 | 199 | 127 | 5 | 33 | 207 | 413 | 608 | 1.82e-13 | 68.6 |
Msa0515610 | MtrunA17_Chr3g0145801 | 21.941 | 237 | 149 | 7 | 2 | 207 | 394 | 625 | 1.89e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0515610 | AT1G77470.1 | 80.465 | 215 | 32 | 3 | 1 | 207 | 1 | 213 | 4.37e-118 | 340 |
Msa0515610 | AT1G21690.1 | 50.556 | 180 | 83 | 3 | 34 | 207 | 11 | 190 | 4.19e-59 | 189 |
Msa0515610 | AT1G21690.3 | 50.556 | 180 | 83 | 3 | 34 | 207 | 11 | 190 | 6.73e-59 | 188 |
Msa0515610 | AT1G21690.4 | 50.279 | 179 | 78 | 3 | 34 | 207 | 11 | 183 | 2.08e-57 | 184 |
Msa0515610 | AT1G21690.2 | 50.000 | 180 | 72 | 4 | 34 | 207 | 11 | 178 | 7.17e-57 | 182 |
Msa0515610 | AT1G63160.1 | 50.857 | 175 | 82 | 2 | 34 | 207 | 17 | 188 | 1.99e-51 | 169 |
Msa0515610 | AT5G27740.1 | 32.353 | 204 | 109 | 2 | 33 | 207 | 2 | 205 | 8.96e-34 | 124 |
Find 53 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACCTCTACGTAACGCAAAT+TGG | 0.189548 | 3_4:-66883605 | None:intergenic |
TCAGTATCATAATATGATTT+TGG | 0.311016 | 3_4:+66882457 | Msa0515610:CDS |
CTTCAAACCCTCTGTAAAAC+TGG | 0.350255 | 3_4:+66883545 | Msa0515610:CDS |
AATCAAGATGCACCCGGTTT+CGG | 0.378472 | 3_4:+66883794 | Msa0515610:CDS |
GTGCATCTTGATTGCAGTGC+TGG | 0.392350 | 3_4:-66883784 | None:intergenic |
CTGCTGTTGTATGGTCCTCC+TGG | 0.395722 | 3_4:+66882383 | Msa0515610:CDS |
CAAGAGGGGCAAACCGAAAC+CGG | 0.396956 | 3_4:-66883807 | None:intergenic |
AGCACTCAGAGTCTATCATT+TGG | 0.402934 | 3_4:+66882542 | Msa0515610:CDS |
GCCACCGAAGGAAGGGTTAC+CGG | 0.403122 | 3_4:-66882149 | None:intergenic |
ACCTCTACGTAACGCAAATT+GGG | 0.410660 | 3_4:-66883604 | None:intergenic |
GCACTCAGAGTCTATCATTT+GGG | 0.412330 | 3_4:+66882543 | Msa0515610:CDS |
TTGTATGGTCCTCCTGGAAC+GGG | 0.453099 | 3_4:+66882389 | Msa0515610:CDS |
GCCGCCGGTAACCCTTCCTT+CGG | 0.453827 | 3_4:+66882145 | Msa0515610:CDS |
TTACCCCATCTGCTGTTGTA+TGG | 0.471783 | 3_4:+66882374 | Msa0515610:CDS |
TCGGTGGCAAAGCTTCGCTA+TGG | 0.473250 | 3_4:+66882164 | Msa0515610:CDS |
CGGTGGCAAAGCTTCGCTAT+GGG | 0.498078 | 3_4:+66882165 | Msa0515610:CDS |
GCAACATCGTCGAGGGATTG+AGG | 0.509495 | 3_4:-66882202 | None:intergenic |
GGCGGAGGAGACTTATCCTA+TGG | 0.511189 | 3_4:+66882087 | Msa0515610:CDS |
GTTGTATGGTCCTCCTGGAA+CGG | 0.512128 | 3_4:+66882388 | Msa0515610:CDS |
GCGGTGGCGCGAAAATTATA+CGG | 0.514722 | 3_4:+66882431 | Msa0515610:CDS |
CTGAATGCTTCAGATGATAG+AGG | 0.516669 | 3_4:+66882482 | Msa0515610:CDS |
TGAAGCAGATGCCATGACTA+AGG | 0.516889 | 3_4:+66883578 | Msa0515610:CDS |
GAAGCTTTGCCACCGAAGGA+AGG | 0.543002 | 3_4:-66882157 | None:intergenic |
TGCATCTTGATTGCAGTGCT+GGG | 0.544244 | 3_4:-66883783 | None:intergenic |
GCCGGTAACCCTTCCTTCGG+TGG | 0.549196 | 3_4:+66882148 | Msa0515610:CDS |
GGCAAAACCGTCATTGCCGC+CGG | 0.553759 | 3_4:+66882130 | Msa0515610:CDS |
AGGGTTACCGGCGGCAATGA+CGG | 0.559162 | 3_4:-66882137 | None:intergenic |
GAGGACCATACAACAGCAGA+TGG | 0.563295 | 3_4:-66882379 | None:intergenic |
GGGTTTAATAACCATGGCGG+AGG | 0.566041 | 3_4:+66882072 | None:intergenic |
TCTGTGAAGTCGATGTCCAT+AGG | 0.581778 | 3_4:-66882103 | None:intergenic |
AAGCTTTGCCACCGAAGGAA+GGG | 0.581985 | 3_4:-66882156 | None:intergenic |
AAGAGGGGCAAACCGAAACC+GGG | 0.584016 | 3_4:-66883806 | None:intergenic |
GTGAGCTGCAACATCGTCGA+GGG | 0.599799 | 3_4:-66882209 | None:intergenic |
CACTGCAATCAAGATGCACC+CGG | 0.601545 | 3_4:+66883788 | Msa0515610:CDS |
TAGCGAAGCTTTGCCACCGA+AGG | 0.602957 | 3_4:-66882161 | None:intergenic |
TGACATGGACAGCATCAAGA+GGG | 0.608265 | 3_4:-66883822 | None:intergenic |
AAATTGGGCATCCTTAGTCA+TGG | 0.619881 | 3_4:-66883589 | None:intergenic |
GCCCAATTTGCGTTACGTAG+AGG | 0.621180 | 3_4:+66883603 | Msa0515610:CDS |
AACATGTTATCAATGCTGAA+AGG | 0.623395 | 3_4:+66883857 | Msa0515610:CDS |
AGGATAAGTCTCCTCCGCCA+TGG | 0.624657 | 3_4:-66882083 | None:intergenic |
AGGACCATACAACAGCAGAT+GGG | 0.625782 | 3_4:-66882378 | None:intergenic |
TACTTGTGTCGACGATGTCG+CGG | 0.626145 | 3_4:-66882231 | None:intergenic |
GTTTCAGTCTCTCAGTGACA+TGG | 0.627168 | 3_4:-66883837 | None:intergenic |
GGACCATACAACAGCAGATG+GGG | 0.630103 | 3_4:-66882377 | None:intergenic |
GACATCGACTTCACAGACAA+GGG | 0.631926 | 3_4:+66882109 | Msa0515610:CDS |
GGACATCGACTTCACAGACA+AGG | 0.636430 | 3_4:+66882108 | Msa0515610:CDS |
GTGACATGGACAGCATCAAG+AGG | 0.637050 | 3_4:-66883823 | None:intergenic |
AGAAATATACAAAGAGCACT+AGG | 0.637557 | 3_4:+66883725 | Msa0515610:CDS |
AACATCGACGATTCTCGCGG+TGG | 0.654620 | 3_4:+66882415 | Msa0515610:CDS |
GGTGAGCTGCAACATCGTCG+AGG | 0.664996 | 3_4:-66882210 | None:intergenic |
GACATGGACAGCATCAAGAG+GGG | 0.683891 | 3_4:-66883821 | None:intergenic |
ACCGAAGGAAGGGTTACCGG+CGG | 0.687119 | 3_4:-66882146 | None:intergenic |
TAAAACATCGACGATTCTCG+CGG | 0.694200 | 3_4:+66882412 | Msa0515610:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAAGTTTTTACAAAGTAAA+CGG | - | chr3_4:66882844-66882863 | None:intergenic | 15.0% |
!!! | AAAAGTTTTTACAAAGTAAA+CGG | - | chr3_4:66882844-66882863 | None:intergenic | 15.0% |
!!! | TCAGTATCATAATATGATTT+TGG | + | chr3_4:66882457-66882476 | Msa0515610:CDS | 20.0% |
!! | AATTTCATTAAAGTTGAACA+AGG | - | chr3_4:66882818-66882837 | None:intergenic | 20.0% |
!!! | AAAGTTTTTACAAAGTAAAC+GGG | - | chr3_4:66882843-66882862 | None:intergenic | 20.0% |
!! | AGAAGATAAAATGTTAGTTA+GGG | + | chr3_4:66882950-66882969 | Msa0515610:intron | 20.0% |
!!! | GTAAAACTAACACAAATTTT+AGG | + | chr3_4:66883079-66883098 | Msa0515610:intron | 20.0% |
!!! | AAATGTTTTCACAAAGTAAA+CGG | + | chr3_4:66883115-66883134 | Msa0515610:intron | 20.0% |
!! | ATAAAAGTGAAACAAGAATT+TGG | + | chr3_4:66883443-66883462 | Msa0515610:intron | 20.0% |
!! | TAAAAGTGAAACAAGAATTT+GGG | + | chr3_4:66883444-66883463 | Msa0515610:intron | 20.0% |
!!! | TCAGTATCATAATATGATTT+TGG | + | chr3_4:66882457-66882476 | Msa0515610:CDS | 20.0% |
!! | AATTTCATTAAAGTTGAACA+AGG | - | chr3_4:66882818-66882837 | None:intergenic | 20.0% |
!!! | AAAGTTTTTACAAAGTAAAC+GGG | - | chr3_4:66882843-66882862 | None:intergenic | 20.0% |
!! | AGAAGATAAAATGTTAGTTA+GGG | + | chr3_4:66882950-66882969 | Msa0515610:intron | 20.0% |
!!! | GTAAAACTAACACAAATTTT+AGG | + | chr3_4:66883079-66883098 | Msa0515610:intron | 20.0% |
!!! | AAATGTTTTCACAAAGTAAA+CGG | + | chr3_4:66883115-66883134 | Msa0515610:intron | 20.0% |
!! | ATAAAAGTGAAACAAGAATT+TGG | + | chr3_4:66883443-66883462 | Msa0515610:intron | 20.0% |
!! | TAAAAGTGAAACAAGAATTT+GGG | + | chr3_4:66883444-66883463 | Msa0515610:intron | 20.0% |
!! | TTTTTGTGTGTTTAGTTGAT+AGG | + | chr3_4:66882333-66882352 | Msa0515610:intron | 25.0% |
! | ACATGCAAATTTACTACATA+AGG | - | chr3_4:66882663-66882682 | None:intergenic | 25.0% |
! | AAATTTGCATGTCAAATTTG+AGG | + | chr3_4:66882671-66882690 | Msa0515610:intron | 25.0% |
!!! | TTTGACTTGATTTGTTGTTA+TGG | + | chr3_4:66882697-66882716 | Msa0515610:intron | 25.0% |
!! | ATTTAACTTTGTGTCGAATA+AGG | + | chr3_4:66882756-66882775 | Msa0515610:intron | 25.0% |
! | GAGAAGATAAAATGTTAGTT+AGG | + | chr3_4:66882949-66882968 | Msa0515610:intron | 25.0% |
!! | AATACTGAAAACAGTTCTTT+TGG | + | chr3_4:66882989-66883008 | Msa0515610:intron | 25.0% |
!! | AATGTTTTCACAAAGTAAAC+GGG | + | chr3_4:66883116-66883135 | Msa0515610:intron | 25.0% |
! | TAAACATTAAAGACGATACA+AGG | + | chr3_4:66883292-66883311 | Msa0515610:intron | 25.0% |
!! | TTTGATAGTTAGAAAAGTTG+AGG | - | chr3_4:66883506-66883525 | None:intergenic | 25.0% |
!!! | AAGAATATGAAGAGTGTTAT+AGG | - | chr3_4:66883690-66883709 | None:intergenic | 25.0% |
!! | TTTTTGTGTGTTTAGTTGAT+AGG | + | chr3_4:66882333-66882352 | Msa0515610:intron | 25.0% |
! | ACATGCAAATTTACTACATA+AGG | - | chr3_4:66882663-66882682 | None:intergenic | 25.0% |
! | AAATTTGCATGTCAAATTTG+AGG | + | chr3_4:66882671-66882690 | Msa0515610:intron | 25.0% |
!!! | TTTGACTTGATTTGTTGTTA+TGG | + | chr3_4:66882697-66882716 | Msa0515610:intron | 25.0% |
!! | ATTTAACTTTGTGTCGAATA+AGG | + | chr3_4:66882756-66882775 | Msa0515610:intron | 25.0% |
! | GAGAAGATAAAATGTTAGTT+AGG | + | chr3_4:66882949-66882968 | Msa0515610:intron | 25.0% |
!! | AATACTGAAAACAGTTCTTT+TGG | + | chr3_4:66882989-66883008 | Msa0515610:intron | 25.0% |
!! | AATGTTTTCACAAAGTAAAC+GGG | + | chr3_4:66883116-66883135 | Msa0515610:intron | 25.0% |
! | TAAACATTAAAGACGATACA+AGG | + | chr3_4:66883292-66883311 | Msa0515610:intron | 25.0% |
!! | TTTGATAGTTAGAAAAGTTG+AGG | - | chr3_4:66883506-66883525 | None:intergenic | 25.0% |
!!! | AAGAATATGAAGAGTGTTAT+AGG | - | chr3_4:66883690-66883709 | None:intergenic | 25.0% |
ATAAACCCTAGAAATGAAAG+GGG | - | chr3_4:66882279-66882298 | None:intergenic | 30.0% | |
GATAAACCCTAGAAATGAAA+GGG | - | chr3_4:66882280-66882299 | None:intergenic | 30.0% | |
TGATAAACCCTAGAAATGAA+AGG | - | chr3_4:66882281-66882300 | None:intergenic | 30.0% | |
! | TCTAGGGTTTATCATTTCTT+CGG | + | chr3_4:66882287-66882306 | Msa0515610:intron | 30.0% |
! | TTTTGTGACTGCATAATAGA+TGG | + | chr3_4:66882615-66882634 | Msa0515610:intron | 30.0% |
TTAAATCGAAGCACATTTCA+CGG | - | chr3_4:66882742-66882761 | None:intergenic | 30.0% | |
! | TTTGAAATGAACCATTGTGA+TGG | + | chr3_4:66882925-66882944 | Msa0515610:intron | 30.0% |
TTGAAATGAACCATTGTGAT+GGG | + | chr3_4:66882926-66882945 | Msa0515610:intron | 30.0% | |
! | AGTTCTTTTGGCATTTTCAT+TGG | + | chr3_4:66883001-66883020 | Msa0515610:intron | 30.0% |
! | ATGAACAAGTGTGCATATTT+TGG | - | chr3_4:66883029-66883048 | None:intergenic | 30.0% |
!!! | GTTAGTTTTACTTGCTAACA+AGG | - | chr3_4:66883070-66883089 | None:intergenic | 30.0% |
! | ATGTTTTCACAAAGTAAACG+GGG | + | chr3_4:66883117-66883136 | Msa0515610:intron | 30.0% |
TCTATCTTCTTTCTGAATAC+CGG | + | chr3_4:66883212-66883231 | Msa0515610:intron | 30.0% | |
TTTCTGAATACCGGATAATT+CGG | + | chr3_4:66883221-66883240 | Msa0515610:intron | 30.0% | |
ATAAAAATGCCCGAATTATC+CGG | - | chr3_4:66883234-66883253 | None:intergenic | 30.0% | |
!! | AGTGTTGATATCAGCTTAAA+GGG | - | chr3_4:66883272-66883291 | None:intergenic | 30.0% |
!! | AAGTGTTGATATCAGCTTAA+AGG | - | chr3_4:66883273-66883292 | None:intergenic | 30.0% |
ATCATGTCTGAAAATTGACA+TGG | - | chr3_4:66883340-66883359 | None:intergenic | 30.0% | |
! | ATGTCAATTTTCAGACATGA+TGG | + | chr3_4:66883339-66883358 | Msa0515610:intron | 30.0% |
!! | AGAAATATACAAAGAGCACT+AGG | + | chr3_4:66883725-66883744 | Msa0515610:CDS | 30.0% |
ATAAACCCTAGAAATGAAAG+GGG | - | chr3_4:66882279-66882298 | None:intergenic | 30.0% | |
GATAAACCCTAGAAATGAAA+GGG | - | chr3_4:66882280-66882299 | None:intergenic | 30.0% | |
TGATAAACCCTAGAAATGAA+AGG | - | chr3_4:66882281-66882300 | None:intergenic | 30.0% | |
! | TCTAGGGTTTATCATTTCTT+CGG | + | chr3_4:66882287-66882306 | Msa0515610:intron | 30.0% |
! | TTTTGTGACTGCATAATAGA+TGG | + | chr3_4:66882615-66882634 | Msa0515610:intron | 30.0% |
TTAAATCGAAGCACATTTCA+CGG | - | chr3_4:66882742-66882761 | None:intergenic | 30.0% | |
! | TTTGAAATGAACCATTGTGA+TGG | + | chr3_4:66882925-66882944 | Msa0515610:intron | 30.0% |
TTGAAATGAACCATTGTGAT+GGG | + | chr3_4:66882926-66882945 | Msa0515610:intron | 30.0% | |
! | AGTTCTTTTGGCATTTTCAT+TGG | + | chr3_4:66883001-66883020 | Msa0515610:intron | 30.0% |
! | ATGAACAAGTGTGCATATTT+TGG | - | chr3_4:66883029-66883048 | None:intergenic | 30.0% |
!!! | GTTAGTTTTACTTGCTAACA+AGG | - | chr3_4:66883070-66883089 | None:intergenic | 30.0% |
! | ATGTTTTCACAAAGTAAACG+GGG | + | chr3_4:66883117-66883136 | Msa0515610:intron | 30.0% |
TCTATCTTCTTTCTGAATAC+CGG | + | chr3_4:66883212-66883231 | Msa0515610:intron | 30.0% | |
TTTCTGAATACCGGATAATT+CGG | + | chr3_4:66883221-66883240 | Msa0515610:intron | 30.0% | |
ATAAAAATGCCCGAATTATC+CGG | - | chr3_4:66883234-66883253 | None:intergenic | 30.0% | |
!! | AGTGTTGATATCAGCTTAAA+GGG | - | chr3_4:66883272-66883291 | None:intergenic | 30.0% |
!! | AAGTGTTGATATCAGCTTAA+AGG | - | chr3_4:66883273-66883292 | None:intergenic | 30.0% |
ATCATGTCTGAAAATTGACA+TGG | - | chr3_4:66883340-66883359 | None:intergenic | 30.0% | |
! | ATGTCAATTTTCAGACATGA+TGG | + | chr3_4:66883339-66883358 | Msa0515610:intron | 30.0% |
!! | AGAAATATACAAAGAGCACT+AGG | + | chr3_4:66883725-66883744 | Msa0515610:CDS | 30.0% |
TAACTTCCCCTTTCATTTCT+AGG | + | chr3_4:66882270-66882289 | Msa0515610:intron | 35.0% | |
AACTTCCCCTTTCATTTCTA+GGG | + | chr3_4:66882271-66882290 | Msa0515610:intron | 35.0% | |
! | TTCCTAACTTCCTTTTGTGT+GGG | + | chr3_4:66882576-66882595 | Msa0515610:intron | 35.0% |
! | ACAAGGAAAGCATGGATAAA+TGG | - | chr3_4:66882801-66882820 | None:intergenic | 35.0% |
AAAGTTGAACAAGGAAAGCA+TGG | - | chr3_4:66882809-66882828 | None:intergenic | 35.0% | |
TGAAATGAACCATTGTGATG+GGG | + | chr3_4:66882927-66882946 | Msa0515610:intron | 35.0% | |
TTCTGAATACCGGATAATTC+GGG | + | chr3_4:66883222-66883241 | Msa0515610:intron | 35.0% | |
! | GTGTTGATATCAGCTTAAAG+GGG | - | chr3_4:66883271-66883290 | None:intergenic | 35.0% |
TGAAAATTGACATGGACATG+AGG | - | chr3_4:66883332-66883351 | None:intergenic | 35.0% | |
! | AACAAGACCAGTTTTACAGA+GGG | - | chr3_4:66883555-66883574 | None:intergenic | 35.0% |
! | TAACAAGACCAGTTTTACAG+AGG | - | chr3_4:66883556-66883575 | None:intergenic | 35.0% |
AGTGTTATAGGTCAAGAAAC+TGG | - | chr3_4:66883678-66883697 | None:intergenic | 35.0% | |
TAACTTCCCCTTTCATTTCT+AGG | + | chr3_4:66882270-66882289 | Msa0515610:intron | 35.0% | |
AACTTCCCCTTTCATTTCTA+GGG | + | chr3_4:66882271-66882290 | Msa0515610:intron | 35.0% | |
! | TTCCTAACTTCCTTTTGTGT+GGG | + | chr3_4:66882576-66882595 | Msa0515610:intron | 35.0% |
! | ACAAGGAAAGCATGGATAAA+TGG | - | chr3_4:66882801-66882820 | None:intergenic | 35.0% |
AAAGTTGAACAAGGAAAGCA+TGG | - | chr3_4:66882809-66882828 | None:intergenic | 35.0% | |
TGAAATGAACCATTGTGATG+GGG | + | chr3_4:66882927-66882946 | Msa0515610:intron | 35.0% | |
TTCTGAATACCGGATAATTC+GGG | + | chr3_4:66883222-66883241 | Msa0515610:intron | 35.0% | |
! | GTGTTGATATCAGCTTAAAG+GGG | - | chr3_4:66883271-66883290 | None:intergenic | 35.0% |
TGAAAATTGACATGGACATG+AGG | - | chr3_4:66883332-66883351 | None:intergenic | 35.0% | |
! | AACAAGACCAGTTTTACAGA+GGG | - | chr3_4:66883555-66883574 | None:intergenic | 35.0% |
! | TAACAAGACCAGTTTTACAG+AGG | - | chr3_4:66883556-66883575 | None:intergenic | 35.0% |
AGTGTTATAGGTCAAGAAAC+TGG | - | chr3_4:66883678-66883697 | None:intergenic | 35.0% | |
ATGAAAGGGGAAGTTAGAGA+GGG | - | chr3_4:66882266-66882285 | None:intergenic | 40.0% | |
AATGAAAGGGGAAGTTAGAG+AGG | - | chr3_4:66882267-66882286 | None:intergenic | 40.0% | |
TAAAACATCGACGATTCTCG+CGG | + | chr3_4:66882412-66882431 | Msa0515610:CDS | 40.0% | |
CTGAATGCTTCAGATGATAG+AGG | + | chr3_4:66882482-66882501 | Msa0515610:CDS | 40.0% | |
AGCACTCAGAGTCTATCATT+TGG | + | chr3_4:66882542-66882561 | Msa0515610:CDS | 40.0% | |
GCACTCAGAGTCTATCATTT+GGG | + | chr3_4:66882543-66882562 | Msa0515610:CDS | 40.0% | |
! | CTTCCTAACTTCCTTTTGTG+TGG | + | chr3_4:66882575-66882594 | Msa0515610:intron | 40.0% |
CAGTAAAACACCCACACAAA+AGG | - | chr3_4:66882589-66882608 | None:intergenic | 40.0% | |
TTATCTTCTCCCCATCACAA+TGG | - | chr3_4:66882939-66882958 | None:intergenic | 40.0% | |
TATCATTCCATCAGCCAATG+CGG | + | chr3_4:66883179-66883198 | Msa0515610:intron | 40.0% | |
TAGATATAGAACCTCCGCAT+TGG | - | chr3_4:66883196-66883215 | None:intergenic | 40.0% | |
AAAGCACATGCAAGCAGAAA+GGG | - | chr3_4:66883405-66883424 | None:intergenic | 40.0% | |
! | AAAAGCACATGCAAGCAGAA+AGG | - | chr3_4:66883406-66883425 | None:intergenic | 40.0% |
! | TGCTTGCATGTGCTTTTGAT+TGG | + | chr3_4:66883409-66883428 | Msa0515610:intron | 40.0% |
!! | GCTTGCATGTGCTTTTGATT+GGG | + | chr3_4:66883410-66883429 | Msa0515610:intron | 40.0% |
CTTCAAACCCTCTGTAAAAC+TGG | + | chr3_4:66883545-66883564 | Msa0515610:CDS | 40.0% | |
AAATTGGGCATCCTTAGTCA+TGG | - | chr3_4:66883592-66883611 | None:intergenic | 40.0% | |
ACCTCTACGTAACGCAAATT+GGG | - | chr3_4:66883607-66883626 | None:intergenic | 40.0% | |
ATGAAAGGGGAAGTTAGAGA+GGG | - | chr3_4:66882266-66882285 | None:intergenic | 40.0% | |
AATGAAAGGGGAAGTTAGAG+AGG | - | chr3_4:66882267-66882286 | None:intergenic | 40.0% | |
TAAAACATCGACGATTCTCG+CGG | + | chr3_4:66882412-66882431 | Msa0515610:CDS | 40.0% | |
CTGAATGCTTCAGATGATAG+AGG | + | chr3_4:66882482-66882501 | Msa0515610:CDS | 40.0% | |
AGCACTCAGAGTCTATCATT+TGG | + | chr3_4:66882542-66882561 | Msa0515610:CDS | 40.0% | |
GCACTCAGAGTCTATCATTT+GGG | + | chr3_4:66882543-66882562 | Msa0515610:CDS | 40.0% | |
! | CTTCCTAACTTCCTTTTGTG+TGG | + | chr3_4:66882575-66882594 | Msa0515610:intron | 40.0% |
CAGTAAAACACCCACACAAA+AGG | - | chr3_4:66882589-66882608 | None:intergenic | 40.0% | |
TTATCTTCTCCCCATCACAA+TGG | - | chr3_4:66882939-66882958 | None:intergenic | 40.0% | |
TATCATTCCATCAGCCAATG+CGG | + | chr3_4:66883179-66883198 | Msa0515610:intron | 40.0% | |
TAGATATAGAACCTCCGCAT+TGG | - | chr3_4:66883196-66883215 | None:intergenic | 40.0% | |
AAAGCACATGCAAGCAGAAA+GGG | - | chr3_4:66883405-66883424 | None:intergenic | 40.0% | |
! | AAAAGCACATGCAAGCAGAA+AGG | - | chr3_4:66883406-66883425 | None:intergenic | 40.0% |
! | TGCTTGCATGTGCTTTTGAT+TGG | + | chr3_4:66883409-66883428 | Msa0515610:intron | 40.0% |
!! | GCTTGCATGTGCTTTTGATT+GGG | + | chr3_4:66883410-66883429 | Msa0515610:intron | 40.0% |
CTTCAAACCCTCTGTAAAAC+TGG | + | chr3_4:66883545-66883564 | Msa0515610:CDS | 40.0% | |
AAATTGGGCATCCTTAGTCA+TGG | - | chr3_4:66883592-66883611 | None:intergenic | 40.0% | |
ACCTCTACGTAACGCAAATT+GGG | - | chr3_4:66883607-66883626 | None:intergenic | 40.0% | |
TCTGTGAAGTCGATGTCCAT+AGG | - | chr3_4:66882106-66882125 | None:intergenic | 45.0% | |
!! | GACATCGACTTCACAGACAA+GGG | + | chr3_4:66882109-66882128 | Msa0515610:CDS | 45.0% |
TTACCCCATCTGCTGTTGTA+TGG | + | chr3_4:66882374-66882393 | Msa0515610:CDS | 45.0% | |
AGGACCATACAACAGCAGAT+GGG | - | chr3_4:66882381-66882400 | None:intergenic | 45.0% | |
CACCCACACAAAAGGAAGTT+AGG | - | chr3_4:66882581-66882600 | None:intergenic | 45.0% | |
TCGAAGCACATTTCACGGTA+TGG | - | chr3_4:66882737-66882756 | None:intergenic | 45.0% | |
CGCTAATTACTGCTGAACTC+TGG | - | chr3_4:66883143-66883162 | None:intergenic | 45.0% | |
GAGTTCAGCAGTAATTAGCG+TGG | + | chr3_4:66883143-66883162 | Msa0515610:intron | 45.0% | |
TGAAGCAGATGCCATGACTA+AGG | + | chr3_4:66883578-66883597 | Msa0515610:CDS | 45.0% | |
CACCTCTACGTAACGCAAAT+TGG | - | chr3_4:66883608-66883627 | None:intergenic | 45.0% | |
TGCATCTTGATTGCAGTGCT+GGG | - | chr3_4:66883786-66883805 | None:intergenic | 45.0% | |
AATCAAGATGCACCCGGTTT+CGG | + | chr3_4:66883794-66883813 | Msa0515610:CDS | 45.0% | |
TGACATGGACAGCATCAAGA+GGG | - | chr3_4:66883825-66883844 | None:intergenic | 45.0% | |
GTTTCAGTCTCTCAGTGACA+TGG | - | chr3_4:66883840-66883859 | None:intergenic | 45.0% | |
TCTGTGAAGTCGATGTCCAT+AGG | - | chr3_4:66882106-66882125 | None:intergenic | 45.0% | |
!! | GACATCGACTTCACAGACAA+GGG | + | chr3_4:66882109-66882128 | Msa0515610:CDS | 45.0% |
TTACCCCATCTGCTGTTGTA+TGG | + | chr3_4:66882374-66882393 | Msa0515610:CDS | 45.0% | |
AGGACCATACAACAGCAGAT+GGG | - | chr3_4:66882381-66882400 | None:intergenic | 45.0% | |
CACCCACACAAAAGGAAGTT+AGG | - | chr3_4:66882581-66882600 | None:intergenic | 45.0% | |
TCGAAGCACATTTCACGGTA+TGG | - | chr3_4:66882737-66882756 | None:intergenic | 45.0% | |
CGCTAATTACTGCTGAACTC+TGG | - | chr3_4:66883143-66883162 | None:intergenic | 45.0% | |
GAGTTCAGCAGTAATTAGCG+TGG | + | chr3_4:66883143-66883162 | Msa0515610:intron | 45.0% | |
TGAAGCAGATGCCATGACTA+AGG | + | chr3_4:66883578-66883597 | Msa0515610:CDS | 45.0% | |
CACCTCTACGTAACGCAAAT+TGG | - | chr3_4:66883608-66883627 | None:intergenic | 45.0% | |
TGCATCTTGATTGCAGTGCT+GGG | - | chr3_4:66883786-66883805 | None:intergenic | 45.0% | |
AATCAAGATGCACCCGGTTT+CGG | + | chr3_4:66883794-66883813 | Msa0515610:CDS | 45.0% | |
TGACATGGACAGCATCAAGA+GGG | - | chr3_4:66883825-66883844 | None:intergenic | 45.0% | |
GTTTCAGTCTCTCAGTGACA+TGG | - | chr3_4:66883840-66883859 | None:intergenic | 45.0% | |
!! | GGACATCGACTTCACAGACA+AGG | + | chr3_4:66882108-66882127 | Msa0515610:CDS | 50.0% |
AAGCTTTGCCACCGAAGGAA+GGG | - | chr3_4:66882159-66882178 | None:intergenic | 50.0% | |
! | TACTTGTGTCGACGATGTCG+CGG | - | chr3_4:66882234-66882253 | None:intergenic | 50.0% |
GGGGAAGTTAGAGAGGGAAA+GGG | - | chr3_4:66882260-66882279 | None:intergenic | 50.0% | |
AGGGGAAGTTAGAGAGGGAA+AGG | - | chr3_4:66882261-66882280 | None:intergenic | 50.0% | |
GGACCATACAACAGCAGATG+GGG | - | chr3_4:66882380-66882399 | None:intergenic | 50.0% | |
GAGGACCATACAACAGCAGA+TGG | - | chr3_4:66882382-66882401 | None:intergenic | 50.0% | |
GTTGTATGGTCCTCCTGGAA+CGG | + | chr3_4:66882388-66882407 | Msa0515610:CDS | 50.0% | |
TTGTATGGTCCTCCTGGAAC+GGG | + | chr3_4:66882389-66882408 | Msa0515610:CDS | 50.0% | |
! | GATGTTTTACCCGTTCCAGG+AGG | - | chr3_4:66882401-66882420 | None:intergenic | 50.0% |
! | GTCGATGTTTTACCCGTTCC+AGG | - | chr3_4:66882404-66882423 | None:intergenic | 50.0% |
GCGGTGGCGCGAAAATTATA+CGG | + | chr3_4:66882431-66882450 | Msa0515610:CDS | 50.0% | |
GCCCAATTTGCGTTACGTAG+AGG | + | chr3_4:66883603-66883622 | Msa0515610:CDS | 50.0% | |
GTGCATCTTGATTGCAGTGC+TGG | - | chr3_4:66883787-66883806 | None:intergenic | 50.0% | |
CACTGCAATCAAGATGCACC+CGG | + | chr3_4:66883788-66883807 | Msa0515610:CDS | 50.0% | |
GACATGGACAGCATCAAGAG+GGG | - | chr3_4:66883824-66883843 | None:intergenic | 50.0% | |
GTGACATGGACAGCATCAAG+AGG | - | chr3_4:66883826-66883845 | None:intergenic | 50.0% | |
!! | GGACATCGACTTCACAGACA+AGG | + | chr3_4:66882108-66882127 | Msa0515610:CDS | 50.0% |
AAGCTTTGCCACCGAAGGAA+GGG | - | chr3_4:66882159-66882178 | None:intergenic | 50.0% | |
! | TACTTGTGTCGACGATGTCG+CGG | - | chr3_4:66882234-66882253 | None:intergenic | 50.0% |
GGGGAAGTTAGAGAGGGAAA+GGG | - | chr3_4:66882260-66882279 | None:intergenic | 50.0% | |
AGGGGAAGTTAGAGAGGGAA+AGG | - | chr3_4:66882261-66882280 | None:intergenic | 50.0% | |
GGACCATACAACAGCAGATG+GGG | - | chr3_4:66882380-66882399 | None:intergenic | 50.0% | |
GAGGACCATACAACAGCAGA+TGG | - | chr3_4:66882382-66882401 | None:intergenic | 50.0% | |
GTTGTATGGTCCTCCTGGAA+CGG | + | chr3_4:66882388-66882407 | Msa0515610:CDS | 50.0% | |
TTGTATGGTCCTCCTGGAAC+GGG | + | chr3_4:66882389-66882408 | Msa0515610:CDS | 50.0% | |
! | GATGTTTTACCCGTTCCAGG+AGG | - | chr3_4:66882401-66882420 | None:intergenic | 50.0% |
! | GTCGATGTTTTACCCGTTCC+AGG | - | chr3_4:66882404-66882423 | None:intergenic | 50.0% |
GCGGTGGCGCGAAAATTATA+CGG | + | chr3_4:66882431-66882450 | Msa0515610:CDS | 50.0% | |
GCCCAATTTGCGTTACGTAG+AGG | + | chr3_4:66883603-66883622 | Msa0515610:CDS | 50.0% | |
GTGCATCTTGATTGCAGTGC+TGG | - | chr3_4:66883787-66883806 | None:intergenic | 50.0% | |
CACTGCAATCAAGATGCACC+CGG | + | chr3_4:66883788-66883807 | Msa0515610:CDS | 50.0% | |
GACATGGACAGCATCAAGAG+GGG | - | chr3_4:66883824-66883843 | None:intergenic | 50.0% | |
GTGACATGGACAGCATCAAG+AGG | - | chr3_4:66883826-66883845 | None:intergenic | 50.0% | |
GGCGGAGGAGACTTATCCTA+TGG | + | chr3_4:66882087-66882106 | Msa0515610:CDS | 55.0% | |
GAAGCTTTGCCACCGAAGGA+AGG | - | chr3_4:66882160-66882179 | None:intergenic | 55.0% | |
TAGCGAAGCTTTGCCACCGA+AGG | - | chr3_4:66882164-66882183 | None:intergenic | 55.0% | |
TCGGTGGCAAAGCTTCGCTA+TGG | + | chr3_4:66882164-66882183 | Msa0515610:CDS | 55.0% | |
CGGTGGCAAAGCTTCGCTAT+GGG | + | chr3_4:66882165-66882184 | Msa0515610:CDS | 55.0% | |
GCAACATCGTCGAGGGATTG+AGG | - | chr3_4:66882205-66882224 | None:intergenic | 55.0% | |
GTGAGCTGCAACATCGTCGA+GGG | - | chr3_4:66882212-66882231 | None:intergenic | 55.0% | |
CTGCTGTTGTATGGTCCTCC+TGG | + | chr3_4:66882383-66882402 | Msa0515610:CDS | 55.0% | |
AACATCGACGATTCTCGCGG+TGG | + | chr3_4:66882415-66882434 | Msa0515610:CDS | 55.0% | |
CATTCCATCAGCCAATGCGG+AGG | + | chr3_4:66883182-66883201 | Msa0515610:intron | 55.0% | |
!! | AGAACCTCCGCATTGGCTGA+TGG | - | chr3_4:66883189-66883208 | None:intergenic | 55.0% |
AAGAGGGGCAAACCGAAACC+GGG | - | chr3_4:66883809-66883828 | None:intergenic | 55.0% | |
CAAGAGGGGCAAACCGAAAC+CGG | - | chr3_4:66883810-66883829 | None:intergenic | 55.0% | |
GGCGGAGGAGACTTATCCTA+TGG | + | chr3_4:66882087-66882106 | Msa0515610:CDS | 55.0% | |
GAAGCTTTGCCACCGAAGGA+AGG | - | chr3_4:66882160-66882179 | None:intergenic | 55.0% | |
TAGCGAAGCTTTGCCACCGA+AGG | - | chr3_4:66882164-66882183 | None:intergenic | 55.0% | |
TCGGTGGCAAAGCTTCGCTA+TGG | + | chr3_4:66882164-66882183 | Msa0515610:CDS | 55.0% | |
CGGTGGCAAAGCTTCGCTAT+GGG | + | chr3_4:66882165-66882184 | Msa0515610:CDS | 55.0% | |
GCAACATCGTCGAGGGATTG+AGG | - | chr3_4:66882205-66882224 | None:intergenic | 55.0% | |
GTGAGCTGCAACATCGTCGA+GGG | - | chr3_4:66882212-66882231 | None:intergenic | 55.0% | |
CTGCTGTTGTATGGTCCTCC+TGG | + | chr3_4:66882383-66882402 | Msa0515610:CDS | 55.0% | |
AACATCGACGATTCTCGCGG+TGG | + | chr3_4:66882415-66882434 | Msa0515610:CDS | 55.0% | |
CATTCCATCAGCCAATGCGG+AGG | + | chr3_4:66883182-66883201 | Msa0515610:intron | 55.0% | |
!! | AGAACCTCCGCATTGGCTGA+TGG | - | chr3_4:66883189-66883208 | None:intergenic | 55.0% |
AAGAGGGGCAAACCGAAACC+GGG | - | chr3_4:66883809-66883828 | None:intergenic | 55.0% | |
CAAGAGGGGCAAACCGAAAC+CGG | - | chr3_4:66883810-66883829 | None:intergenic | 55.0% | |
GGCAAAACCGTCATTGCCGC+CGG | + | chr3_4:66882130-66882149 | Msa0515610:CDS | 60.0% | |
AGGGTTACCGGCGGCAATGA+CGG | - | chr3_4:66882140-66882159 | None:intergenic | 60.0% | |
ACCGAAGGAAGGGTTACCGG+CGG | - | chr3_4:66882149-66882168 | None:intergenic | 60.0% | |
GCCACCGAAGGAAGGGTTAC+CGG | - | chr3_4:66882152-66882171 | None:intergenic | 60.0% | |
GGTGAGCTGCAACATCGTCG+AGG | - | chr3_4:66882213-66882232 | None:intergenic | 60.0% | |
GGCAAAACCGTCATTGCCGC+CGG | + | chr3_4:66882130-66882149 | Msa0515610:CDS | 60.0% | |
AGGGTTACCGGCGGCAATGA+CGG | - | chr3_4:66882140-66882159 | None:intergenic | 60.0% | |
ACCGAAGGAAGGGTTACCGG+CGG | - | chr3_4:66882149-66882168 | None:intergenic | 60.0% | |
GCCACCGAAGGAAGGGTTAC+CGG | - | chr3_4:66882152-66882171 | None:intergenic | 60.0% | |
GGTGAGCTGCAACATCGTCG+AGG | - | chr3_4:66882213-66882232 | None:intergenic | 60.0% | |
GCCGCCGGTAACCCTTCCTT+CGG | + | chr3_4:66882145-66882164 | Msa0515610:CDS | 65.0% | |
GCCGGTAACCCTTCCTTCGG+TGG | + | chr3_4:66882148-66882167 | Msa0515610:CDS | 65.0% | |
GCCGCCGGTAACCCTTCCTT+CGG | + | chr3_4:66882145-66882164 | Msa0515610:CDS | 65.0% | |
GCCGGTAACCCTTCCTTCGG+TGG | + | chr3_4:66882148-66882167 | Msa0515610:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_4 | gene | 66882085 | 66883876 | 66882085 | ID=Msa0515610;Name=Msa0515610 |
chr3_4 | mRNA | 66882085 | 66883876 | 66882085 | ID=Msa0515610-mRNA-1;Parent=Msa0515610;Name=Msa0515610-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|0.75|4|0|207 |
chr3_4 | exon | 66882085 | 66882250 | 66882085 | ID=Msa0515610-mRNA-1:exon:17300;Parent=Msa0515610-mRNA-1 |
chr3_4 | exon | 66882348 | 66882564 | 66882348 | ID=Msa0515610-mRNA-1:exon:17301;Parent=Msa0515610-mRNA-1 |
chr3_4 | exon | 66883545 | 66883624 | 66883545 | ID=Msa0515610-mRNA-1:exon:17302;Parent=Msa0515610-mRNA-1 |
chr3_4 | exon | 66883719 | 66883876 | 66883719 | ID=Msa0515610-mRNA-1:exon:17303;Parent=Msa0515610-mRNA-1 |
chr3_4 | CDS | 66882085 | 66882250 | 66882085 | ID=Msa0515610-mRNA-1:cds;Parent=Msa0515610-mRNA-1 |
chr3_4 | CDS | 66882348 | 66882564 | 66882348 | ID=Msa0515610-mRNA-1:cds;Parent=Msa0515610-mRNA-1 |
chr3_4 | CDS | 66883545 | 66883624 | 66883545 | ID=Msa0515610-mRNA-1:cds;Parent=Msa0515610-mRNA-1 |
chr3_4 | CDS | 66883719 | 66883876 | 66883719 | ID=Msa0515610-mRNA-1:cds;Parent=Msa0515610-mRNA-1 |
Gene Sequence |
Protein sequence |