AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0577330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0577330 MtrunA17_Chr8g0377891 90.831 1167 99 3 48 1208 1 1165 0.0 2100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0577330 AT3G23740.1 33.724 341 179 9 895 1209 242 561 5.43e-37 148

Find 274 sgRNAs with CRISPR-Local

Find 429 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGCTGAAATTTCTGAATT+AGG 0.116328 4_1:-81634845 Msa0577330:CDS
TTATTTCTCTTATGGGCTTT+GGG 0.192646 4_1:+81633525 None:intergenic
TCTTGGAAAGATGGCAATTT+TGG 0.194696 4_1:+81632761 None:intergenic
AGTGCTTTCTTGAGTGTTTC+TGG 0.194856 4_1:+81633563 None:intergenic
GGCAACTACTTCCAGGTATT+TGG 0.200105 4_1:+81629989 None:intergenic
GATCGGGAAGTAGCTGAATT+AGG 0.204752 4_1:-81634914 Msa0577330:CDS
TGAGTGGATTATTTCTCTTA+TGG 0.204932 4_1:+81633517 None:intergenic
TTGGGAAGATTCTTAAAATA+TGG 0.218302 4_1:+81633124 None:intergenic
ATTATTTCTCTTATGGGCTT+TGG 0.233144 4_1:+81633524 None:intergenic
CGACAACATCCAGGTGTTTC+AGG 0.234770 4_1:+81631330 None:intergenic
ATCCAAAAGCTTCTGAAGTT+TGG 0.240513 4_1:+81631692 None:intergenic
CTTCTGAATGGCCTAGTTAA+TGG 0.242037 4_1:-81632194 Msa0577330:CDS
CAGCTGAAATTTCTGAATTA+GGG 0.242152 4_1:-81634844 Msa0577330:CDS
GTTACATCGTTTCCACAAAA+AGG 0.243243 4_1:+81635139 None:intergenic
CCCCAAACTTCAGAAGCTTT+TGG 0.244143 4_1:-81631694 Msa0577330:CDS
TCTTCAGCATCTAACATATT+AGG 0.253871 4_1:+81632380 None:intergenic
ATCAGCTTCCCGTGCAAATA+TGG 0.256177 4_1:+81633184 None:intergenic
TGTCAACGACACTCCTCTTT+TGG 0.257812 4_1:-81631052 Msa0577330:CDS
CAACTATCAATCTTAGTTTC+AGG 0.258328 4_1:+81633972 None:intergenic
TGCAAGTTTGAATCTGAAAT+TGG 0.260828 4_1:+81631654 None:intergenic
GCTCCGTCGGTTCTGGAAAA+TGG 0.277936 4_1:-81634884 Msa0577330:CDS
GAGTGGATTATTTCTCTTAT+GGG 0.278982 4_1:+81633518 None:intergenic
AAATCTCTATGAACAGAAAT+TGG 0.285206 4_1:+81631441 None:intergenic
GATTTACCAGTCACACCTTT+AGG 0.298769 4_1:-81631423 Msa0577330:CDS
TCCAAAAGCTTCTGAAGTTT+GGG 0.301497 4_1:+81631693 None:intergenic
TGATTTAGACTCTGAGCTTC+AGG 0.305858 4_1:+81632410 None:intergenic
CGTTCCGTTTGCGGGAATTT+CGG 0.308084 4_1:+81635344 None:intergenic
TCTGCTCTGCTCTGCTGCTT+TGG 0.314647 4_1:+81635384 None:intergenic
GTGGTTACCATAGTCATCTT+TGG 0.316172 4_1:+81633105 None:intergenic
GTCTCGAAATGTGTGAAAAT+TGG 0.319382 4_1:+81635406 None:intergenic
TCCGAACAGAAATTGTTTCT+AGG 0.321079 4_1:-81630042 Msa0577330:three_prime_UTR
CAAGCTGTCAGATGAAGATT+TGG 0.331421 4_1:-81634714 Msa0577330:CDS
TTATCTTGTAGTTGAGATCT+TGG 0.337870 4_1:+81631513 None:intergenic
AGATCGGACGTTCCGTTTGC+GGG 0.338738 4_1:+81635336 None:intergenic
TTGATCTGTGACTTTCATTT+CGG 0.339926 4_1:+81631299 None:intergenic
CAAAGCCCTCTGCATCCTCT+TGG 0.342184 4_1:+81631228 None:intergenic
GTCAAATTGTATTGGCAATT+CGG 0.344690 4_1:+81632733 None:intergenic
CAATCATTTGAATCACTTCC+AGG 0.354354 4_1:+81631624 None:intergenic
GAAATTTCTGAATTAGGGTT+TGG 0.356119 4_1:-81634839 Msa0577330:CDS
GGTGATAGTACAGGAAATTC+TGG 0.363890 4_1:-81631591 Msa0577330:CDS
AAAAGGAAGCAATAACAAAA+AGG 0.364259 4_1:-81632156 Msa0577330:CDS
CGAATTTATTCCCCACTTGC+CGG 0.365212 4_1:-81634950 Msa0577330:CDS
TCTGAGGTATGCTCTGCATT+TGG 0.369214 4_1:+81633607 None:intergenic
TCATGACAATGACCCAATTT+CGG 0.374046 4_1:+81634065 None:intergenic
TCATGAAGACAAGAAGGTTA+TGG 0.374927 4_1:-81634048 Msa0577330:CDS
ATTCAATTACAAAAGGCTAA+TGG 0.376627 4_1:-81634348 Msa0577330:CDS
AGCAAACATAAAACGAAAAG+TGG 0.377281 4_1:+81629896 None:intergenic
CAAGAAGGTTATGGGAGGTC+AGG 0.382245 4_1:-81634039 Msa0577330:CDS
ATCGGGAAGTAGCTGAATTA+GGG 0.382557 4_1:-81634913 Msa0577330:CDS
TCTTGAAACGGAACTTGAAC+CGG 0.382730 4_1:+81635190 None:intergenic
TTCCGAATCTGAAAGTCCTT+TGG 0.386134 4_1:+81635117 None:intergenic
AAGAAAGCAGTTTGTGAGTC+TGG 0.393914 4_1:-81632462 Msa0577330:CDS
TTCAGATCGTGTTGAGGAAA+AGG 0.395076 4_1:-81630119 Msa0577330:CDS
ACTTGAACCGGAACTGAGTA+TGG 0.396740 4_1:+81635202 None:intergenic
CAAAGTTGACTTGAATACTT+TGG 0.397446 4_1:-81632834 Msa0577330:CDS
TTCAGGTGATTTCTCCCTGT+TGG 0.398168 4_1:+81631347 None:intergenic
TATCTTGTAGTTGAGATCTT+GGG 0.399426 4_1:+81631514 None:intergenic
AGCTCAGAGTCTAAATCAAT+TGG 0.402575 4_1:-81632405 Msa0577330:CDS
CAAAACACCAAGCTGCTCTA+AGG 0.402756 4_1:+81633695 None:intergenic
CATGAAGACAAGAAGGTTAT+GGG 0.402943 4_1:-81634047 Msa0577330:CDS
GTACACCTGCCTTGTCCAAC+AGG 0.404686 4_1:-81631362 Msa0577330:CDS
ATACTTCCTTCATAAGGTCT+TGG 0.405275 4_1:+81631115 None:intergenic
TTTATAGGAATACCGAAATT+GGG 0.406959 4_1:-81634077 Msa0577330:intron
TACAGGTACATCTGGTGATC+AGG 0.410151 4_1:-81632975 Msa0577330:intron
CCTACATAGATGACATCATT+AGG 0.410798 4_1:+81634665 None:intergenic
AAAGCCCTCTGCATCCTCTT+GGG 0.411441 4_1:+81631229 None:intergenic
CGAAGATGACGATCTTGTTA+AGG 0.411660 4_1:-81635044 Msa0577330:CDS
TTAAGCAAGATTCTTTCAAC+AGG 0.411745 4_1:-81633761 Msa0577330:CDS
AAAGGAGTTCTCGAGATAGT+AGG 0.415123 4_1:+81631470 None:intergenic
CAAAAGGCTAATGGATGCTA+TGG 0.417412 4_1:-81634339 Msa0577330:CDS
CTCCTATAGTTGACTGAACC+AGG 0.418077 4_1:+81633154 None:intergenic
GAATCTGAAATTGGCAGAAA+TGG 0.419728 4_1:+81631663 None:intergenic
GAGTGAATCAAAGGTGGATC+TGG 0.420859 4_1:-81633838 Msa0577330:CDS
TGTTTCAGATGCTTTCCTGC+AGG 0.422230 4_1:+81630308 None:intergenic
TGGTTACCATAGTCATCTTT+GGG 0.422943 4_1:+81633106 None:intergenic
ACTTGAAACGGAACTTGAAC+CGG 0.426123 4_1:+81635246 None:intergenic
TACTTCCTTCATAAGGTCTT+GGG 0.428201 4_1:+81631116 None:intergenic
GATGCTATGGGAGATAATTT+CGG 0.429372 4_1:-81634326 Msa0577330:intron
ACAATTTGACGCAAAAGAAA+TGG 0.430175 4_1:-81632720 Msa0577330:CDS
AATCTTCCCAAAGATGACTA+TGG 0.436351 4_1:-81633112 Msa0577330:intron
CCACCATGTGTTGCAGTGTC+TGG 0.438116 4_1:+81632233 None:intergenic
TTTGCTGCGGGAACTTGAAA+CGG 0.438266 4_1:+81635234 None:intergenic
ATTTCAGTATCACGGGTCAT+TGG 0.439277 4_1:+81633657 None:intergenic
GTGTTTCTGGTCAGATCCAT+AGG 0.442538 4_1:+81633576 None:intergenic
TGTTAAGATCATCATTCATC+TGG 0.443214 4_1:+81630259 None:intergenic
TTCAAATGATTGTGATCCTA+TGG 0.444913 4_1:-81631613 Msa0577330:CDS
TTCTAGGAGTGGAACACATC+AGG 0.445762 4_1:-81630026 Msa0577330:three_prime_UTR
TGATACCAATGGGCCAGAAC+TGG 0.447913 4_1:-81633940 Msa0577330:CDS
ATGAGGCGGGTGGCGGAGAT+CGG 0.451393 4_1:+81635320 None:intergenic
TCCTAGAAACAATTTCTGTT+CGG 0.452318 4_1:+81630041 None:intergenic
TTCTCCCTGTTGGACAAGGC+AGG 0.452781 4_1:+81631357 None:intergenic
GAATCAACCATACTCAGTTC+CGG 0.453096 4_1:-81635209 Msa0577330:CDS
CCGGCGCCGGCGATTCTGAT+CGG 0.453266 4_1:-81634931 Msa0577330:CDS
AAGGTCTTGGGCAACCTCTT+CGG 0.453280 4_1:+81631128 None:intergenic
ATTGGTGAAGATGCCAGTTC+TGG 0.453428 4_1:+81633927 None:intergenic
AATGTGGATGAGGCGGGTGG+CGG 0.453864 4_1:+81635313 None:intergenic
GGTTCTCACCGGTGTAGTAT+TGG 0.455125 4_1:+81632097 None:intergenic
TATTCCCCACTTGCCGGCGC+CGG 0.457589 4_1:-81634944 Msa0577330:CDS
CGGCGCCGGCGATTCTGATC+GGG 0.457703 4_1:-81634930 Msa0577330:CDS
TCGCCTCGCACGGAGGTCCT+TGG 0.459092 4_1:+81634970 None:intergenic
TTGGCAATTCGGAGGAGTCT+TGG 0.461511 4_1:+81632744 None:intergenic
CTAACAACATGTTTCTGAGA+TGG 0.462834 4_1:+81631091 None:intergenic
GTGACAACTTGATCAGCTAT+AGG 0.464581 4_1:+81631399 None:intergenic
TTTGAGATGGCAAAGGAAGT+TGG 0.468342 4_1:+81632909 None:intergenic
CAAATGCTCTTTCTGCATGA+AGG 0.468866 4_1:+81631178 None:intergenic
GTACCCGCTCCGGTCAGATC+TGG 0.470465 4_1:-81635270 Msa0577330:CDS
GAGATCGGACGTTCCGTTTG+CGG 0.472640 4_1:+81635335 None:intergenic
CTTAACAAGATCGTCATCTT+CGG 0.472983 4_1:+81635045 None:intergenic
AGTACCAGGCAACTACTTCC+AGG 0.473034 4_1:+81629982 None:intergenic
CAGGTTCATTCAATTACAAA+AGG 0.473778 4_1:-81634355 Msa0577330:CDS
CCGATCAGAATCGCCGGCGC+CGG 0.477749 4_1:+81634931 None:intergenic
TTTCTGGGTGCTAGAGATGT+TGG 0.478007 4_1:-81633807 Msa0577330:CDS
TTGAAATTGTTCAAAGCCCC+AGG 0.478616 4_1:-81634374 Msa0577330:CDS
TAACAACATGTTTCTGAGAT+GGG 0.479696 4_1:+81631092 None:intergenic
ACCTCAGAATGTCAAACCTA+TGG 0.482063 4_1:-81633592 Msa0577330:CDS
AAAGCTCACCGTACCCGCTC+CGG 0.482065 4_1:-81635280 Msa0577330:CDS
TTCTCAGTATCTACTTGCAT+TGG 0.482411 4_1:+81633909 None:intergenic
CCTAATGATGTCATCTATGT+AGG 0.488989 4_1:-81634665 Msa0577330:CDS
TCAAACTTGCAAGTAACTCC+TGG 0.489368 4_1:-81631642 Msa0577330:CDS
TTCGGATGATAGATAATGTA+AGG 0.491626 4_1:+81630059 None:intergenic
AATCTTATCACACACCATTA+CGG 0.491836 4_1:+81632595 None:intergenic
GATGGGATACTTCCTTCATA+AGG 0.492449 4_1:+81631109 None:intergenic
CGCTCCGGTCAGATCTGGTC+CGG 0.495780 4_1:-81635265 Msa0577330:CDS
CTTACATGTTTGCTCTTGAG+TGG 0.497544 4_1:+81633501 None:intergenic
AAGCTGTCAGATGAAGATTT+GGG 0.498032 4_1:-81634713 Msa0577330:CDS
CGGGTGAATGTGGATGAGGC+GGG 0.499168 4_1:+81635307 None:intergenic
AACCAAAGGACTTTCAGATT+CGG 0.499438 4_1:-81635119 Msa0577330:CDS
AACAGGAACGGGAACGGAAG+AGG 0.499995 4_1:+81635162 None:intergenic
CGATCTGAAAACTTAACACT+TGG 0.500039 4_1:+81630133 None:intergenic
ACCTGACTTCCATCCAAAAG+AGG 0.501538 4_1:+81631039 None:intergenic
TCGGAGGAGTCTTGGAAAGA+TGG 0.504525 4_1:+81632752 None:intergenic
CTGAAAATTCAAGCGAGGGC+CGG 0.506924 4_1:-81634559 Msa0577330:CDS
TGATCAGCTATAGGACCTAA+AGG 0.507484 4_1:+81631408 None:intergenic
CCATGAGATGACATATTAGC+AGG 0.510296 4_1:+81632791 None:intergenic
TTGACATCTGATAATCATGA+AGG 0.512397 4_1:-81634002 Msa0577330:CDS
CAAATCTTCATCTGACAGCT+TGG 0.516191 4_1:+81634715 None:intergenic
GGTTCAAAGATGCCTTCAAA+AGG 0.517017 4_1:-81632173 Msa0577330:CDS
TATTTCTCTTATGGGCTTTG+GGG 0.517892 4_1:+81633526 None:intergenic
TTCAGGTGAAAGAAGCCTGC+AGG 0.518152 4_1:-81630323 Msa0577330:intron
ACTAGATTCTTCATTTGAGA+TGG 0.520142 4_1:+81632295 None:intergenic
AATCGCCGGCGCCGGCAAGT+GGG 0.521074 4_1:+81634939 None:intergenic
CCCCTGGTTCAGTCAACTAT+AGG 0.521818 4_1:-81633156 Msa0577330:CDS
TCGCCATCAATTGCTGAAAA+CGG 0.522563 4_1:-81634815 Msa0577330:CDS
GCACCATGGGTGATACCAAT+GGG 0.525467 4_1:-81633950 Msa0577330:CDS
ACAGAAATTGTTTCTAGGAG+TGG 0.525781 4_1:-81630037 Msa0577330:three_prime_UTR
GAATCGCCGGCGCCGGCAAG+TGG 0.526594 4_1:+81634938 None:intergenic
AGATCTGACCGGAGCGGGTA+CGG 0.528313 4_1:+81635272 None:intergenic
CTTGGCGTTAGTTCCCGAAA+AGG 0.530408 4_1:-81631267 Msa0577330:CDS
CCTCGCACGGAGGTCCTTGG+TGG 0.530427 4_1:+81634973 None:intergenic
AGAGCAGAGCAGAGCAGCCA+TGG 0.531954 4_1:-81635374 Msa0577330:CDS
GACTGATCCTTGTTCCGTAA+TGG 0.533682 4_1:-81632609 Msa0577330:CDS
CATCATTCAAGCAATGAGAA+AGG 0.534669 4_1:-81632494 Msa0577330:CDS
TCCATAGGTTTGACATTCTG+AGG 0.534755 4_1:+81633591 None:intergenic
GAAGAGGGTTCCTCTTGAAA+CGG 0.536043 4_1:+81635178 None:intergenic
CTGAAACACCTGGATGTTGT+CGG 0.536845 4_1:-81631329 Msa0577330:CDS
AGGTTCTAAATCGCTGCCCA+TGG 0.537008 4_1:-81631930 Msa0577330:CDS
TTCATAAACCATATTTGCAC+GGG 0.537606 4_1:-81633192 Msa0577330:CDS
GGGAATAAATTCGCCTCGCA+CGG 0.538413 4_1:+81634960 None:intergenic
TGGCCCATTGGTATCACCCA+TGG 0.538471 4_1:+81633947 None:intergenic
GGACCAGATCTGACCGGAGC+GGG 0.538597 4_1:+81635267 None:intergenic
ATCACATATTTCAGTATCAC+GGG 0.541351 4_1:+81633650 None:intergenic
CCTGCTAATATGTCATCTCA+TGG 0.541971 4_1:-81632791 Msa0577330:CDS
GAAGCTTCTTCACTTTGAGA+TGG 0.542689 4_1:+81632896 None:intergenic
AGCTTTGCTGCGGGTGAATG+TGG 0.543562 4_1:+81635297 None:intergenic
ACAGATCAACTTGATGCCCT+TGG 0.544853 4_1:-81631285 Msa0577330:CDS
TGTGATGATATTGTGCTCAA+TGG 0.546109 4_1:-81633633 Msa0577330:CDS
TGATTTCTCCCTGTTGGACA+AGG 0.546492 4_1:+81631353 None:intergenic
TGATCCGAAATTCCCGCAAA+CGG 0.547137 4_1:-81635348 Msa0577330:CDS
ACAGGAACGGGAACGGAAGA+GGG 0.547351 4_1:+81635163 None:intergenic
GCGGGTGAATGTGGATGAGG+CGG 0.548554 4_1:+81635306 None:intergenic
GATCCTATGGGTGATAGTAC+AGG 0.549573 4_1:-81631600 Msa0577330:CDS
AAGATTGATAGTTGCACCAT+GGG 0.550130 4_1:-81633963 Msa0577330:CDS
TGTGATAAGATTGTCACAAA+TGG 0.552424 4_1:-81632584 Msa0577330:CDS
AAGGAGTTCTCGAGATAGTA+GGG 0.552552 4_1:+81631471 None:intergenic
TATTCAAGTCAACTTTGTCA+TGG 0.552776 4_1:+81632840 None:intergenic
AGTTGTCACTAGAGAAGAAG+TGG 0.553740 4_1:-81631385 Msa0577330:CDS
GGCTGTGCCTTAGAGCAGCT+TGG 0.560567 4_1:-81633702 Msa0577330:CDS
ATAGGACCTAAAGGTGTGAC+TGG 0.561769 4_1:+81631417 None:intergenic
GTAGATACTGAGAAAGTGAA+TGG 0.563342 4_1:-81633900 Msa0577330:CDS
TATATATGTGTGTGTGATGG+CGG 0.563439 4_1:+81635438 None:intergenic
GGAATTTCGGATCACGTCCA+TGG 0.563873 4_1:+81635357 None:intergenic
GCATCTTTGAACCATTAACT+AGG 0.564566 4_1:+81632183 None:intergenic
GTGTTTATCTGTGCCATCTG+TGG 0.564797 4_1:-81633874 Msa0577330:CDS
TGCACCATGGGTGATACCAA+TGG 0.565398 4_1:-81633951 Msa0577330:CDS
GACAAGCTCCGACAACATCC+AGG 0.565824 4_1:+81631321 None:intergenic
TTGATCCTCGCATCATCCAC+AGG 0.565826 4_1:+81634785 None:intergenic
AAGAAGGTTATGGGAGGTCA+GGG 0.566531 4_1:-81634038 Msa0577330:CDS
AAAAGGAACAGGAACGGGAA+CGG 0.566531 4_1:+81635156 None:intergenic
ATGATGCTCAAATGAAAGGT+TGG 0.567253 4_1:+81632511 None:intergenic
TACTTCCCGATCAGAATCGC+CGG 0.567923 4_1:+81634925 None:intergenic
TCCTACTGCTAGAAAGTACC+AGG 0.568219 4_1:+81629968 None:intergenic
TTGAATGATGCTCAAATGAA+AGG 0.568241 4_1:+81632507 None:intergenic
GTTCATAAACCATATTTGCA+CGG 0.569319 4_1:-81633193 Msa0577330:CDS
ATATATGTGTGTGTGATGGC+GGG 0.569875 4_1:+81635439 None:intergenic
CGATGTGAGGAATGTGGAAG+AGG 0.571374 4_1:-81634627 Msa0577330:CDS
CATCACATATTTCAGTATCA+CGG 0.572878 4_1:+81633649 None:intergenic
CTTATCTGCACCCTCTGTTG+AGG 0.573087 4_1:-81632687 Msa0577330:CDS
GATAAGATTGTCACAAATGG+TGG 0.573529 4_1:-81632581 Msa0577330:CDS
AGATGCCAGTTCTGGCCCAT+TGG 0.574730 4_1:+81633935 None:intergenic
GGAAAATGGCAGTGTGAGGA+CGG 0.575753 4_1:-81634870 Msa0577330:CDS
ATCGCCGGCGCCGGCAAGTG+GGG 0.577299 4_1:+81634940 None:intergenic
AACAGAAATTGGTGAAACAA+AGG 0.578081 4_1:+81631452 None:intergenic
GTGAATGTGGATGAGGCGGG+TGG 0.579031 4_1:+81635310 None:intergenic
GGTACGGTGAGCTTTGCTGC+GGG 0.582951 4_1:+81635288 None:intergenic
TCTTCACTTTGAGATGGCAA+AGG 0.583276 4_1:+81632902 None:intergenic
GGGGCTTTGAACAATTTCAA+AGG 0.583740 4_1:+81634377 None:intergenic
TGTGTGTGATGGCGGGAACA+AGG 0.584043 4_1:+81635446 None:intergenic
GTTGGTAATGCTTTCGACCA+CGG 0.584626 4_1:-81633789 Msa0577330:CDS
AATACCTGGAAGTAGTTGCC+TGG 0.584643 4_1:-81629986 Msa0577330:three_prime_UTR
GGTTCTAAATCGCTGCCCAT+GGG 0.585890 4_1:-81631929 Msa0577330:CDS
TCACACACCATTACGGAACA+AGG 0.589266 4_1:+81632602 None:intergenic
AAAAGGCTAATGGATGCTAT+GGG 0.591299 4_1:-81634338 Msa0577330:CDS
TTTGTAATTGAATGAACCTG+GGG 0.594391 4_1:+81634358 None:intergenic
TGTGGAAACGATGTAACCAA+AGG 0.595525 4_1:-81635133 Msa0577330:CDS
TGAAACAGAACAACTTGCAA+AGG 0.595999 4_1:-81630292 Msa0577330:CDS
GGTTCAAGTTCCGTTTCAAG+AGG 0.600363 4_1:-81635188 Msa0577330:CDS
GCTGCGGGTGAATGTGGATG+AGG 0.602043 4_1:+81635303 None:intergenic
GGGAAGCTGATCAAAACCCC+TGG 0.602371 4_1:-81633172 Msa0577330:CDS
GAATAATCTTGACTGTGCTA+AGG 0.603599 4_1:-81633739 Msa0577330:CDS
CCACCAAGGACCTCCGTGCG+AGG 0.606940 4_1:-81634973 Msa0577330:CDS
GCAAACATAAAACGAAAAGT+GGG 0.607109 4_1:+81629897 None:intergenic
TCAGAGTTAGCCTCAACAGA+GGG 0.608322 4_1:+81632677 None:intergenic
TCATTGTCATGAAGACAAGA+AGG 0.608420 4_1:-81634054 Msa0577330:CDS
GACACTGCAACACATGGTGG+TGG 0.614063 4_1:-81632230 Msa0577330:CDS
GAGAAATCACCTGAAACACC+TGG 0.614071 4_1:-81631339 Msa0577330:CDS
AGGTCCTTGGTGGTAGCACA+AGG 0.615884 4_1:+81634983 None:intergenic
TTCTGGAAAATGGCAGTGTG+AGG 0.618228 4_1:-81634874 Msa0577330:CDS
GCCTGGTACTTTCTAGCAGT+AGG 0.620569 4_1:-81629969 Msa0577330:three_prime_UTR
CTGGTTCAGTCAACTATAGG+AGG 0.621061 4_1:-81633153 Msa0577330:CDS
GGGTACGGTGAGCTTTGCTG+CGG 0.621821 4_1:+81635287 None:intergenic
TGGTACTTTCTAGCAGTAGG+AGG 0.621839 4_1:-81629966 Msa0577330:three_prime_UTR
GGTTGCCCAAGACCTTATGA+AGG 0.622380 4_1:-81631121 Msa0577330:CDS
TAAATGCTTGAGTGAATCAA+AGG 0.622735 4_1:-81633847 Msa0577330:CDS
AGCAGACAAATGACTGTCAG+TGG 0.623587 4_1:-81632869 Msa0577330:CDS
ATGCTTGAGTGAATCAAAGG+TGG 0.624188 4_1:-81633844 Msa0577330:CDS
CCAAAAGCTTCTGAAGTTTG+GGG 0.630512 4_1:+81631694 None:intergenic
GTTTATATATGTGTGTGTGA+TGG 0.630554 4_1:+81635435 None:intergenic
TCAGCTGCTAGATGCCGAAG+AGG 0.631980 4_1:-81631142 Msa0577330:CDS
GTAGCTGAAAATTCAAGCGA+GGG 0.632081 4_1:-81634563 Msa0577330:CDS
TAGAAGCTAGCTGCGATGTG+AGG 0.635076 4_1:-81634640 Msa0577330:CDS
CTCAGAGTTAGCCTCAACAG+AGG 0.638818 4_1:+81632676 None:intergenic
CCTATAGTTGACTGAACCAG+GGG 0.639145 4_1:+81633156 None:intergenic
TTTAGACTCTGAGCTTCAGG+AGG 0.640447 4_1:+81632413 None:intergenic
TGTAGCTGAAAATTCAAGCG+AGG 0.644391 4_1:-81634564 Msa0577330:CDS
AACAATTTCAAAGGTAAACG+CGG 0.645334 4_1:+81634386 None:intergenic
TTACCAGACACTGCAACACA+TGG 0.645552 4_1:-81632236 Msa0577330:CDS
TCAAATGATTGTGATCCTAT+GGG 0.646538 4_1:-81631612 Msa0577330:CDS
TTTCCTGTACTATCACCCAT+AGG 0.646734 4_1:+81631597 None:intergenic
TCATGATTATCAGATGTCAA+AGG 0.647040 4_1:+81634005 None:intergenic
TGAACCGGACCAGATCTGAC+CGG 0.648831 4_1:+81635261 None:intergenic
TAAGATTGATAGTTGCACCA+TGG 0.648864 4_1:-81633964 Msa0577330:CDS
TACACCTGCCTTGTCCAACA+GGG 0.649992 4_1:-81631361 Msa0577330:CDS
AAATTGTATTGGCAATTCGG+AGG 0.653709 4_1:+81632736 None:intergenic
AAGCATTTATCATCCACAGA+TGG 0.656457 4_1:+81633861 None:intergenic
AAAACCCAAGAGGATGCAGA+GGG 0.661927 4_1:-81631233 Msa0577330:CDS
GTGTGTGATGGCGGGAACAA+GGG 0.664825 4_1:+81635447 None:intergenic
AGAGGCGGATTTATATGCAA+AGG 0.665530 4_1:-81632936 Msa0577330:CDS
TCCTATAGTTGACTGAACCA+GGG 0.668929 4_1:+81633155 None:intergenic
GCTAAGGCTGCTGATCACAA+TGG 0.673146 4_1:-81633723 Msa0577330:CDS
ATACACCTGTGGATGATGCG+AGG 0.679193 4_1:-81634790 Msa0577330:CDS
TTTGGAATCCAATACTACAC+CGG 0.686242 4_1:-81632105 Msa0577330:intron
ATTCCCCTATCAAAATTCAG+AGG 0.686862 4_1:+81634740 None:intergenic
ATAAGATTGTCACAAATGGT+GGG 0.687693 4_1:-81632580 Msa0577330:CDS
AATAAATTCGCCTCGCACGG+AGG 0.688523 4_1:+81634963 None:intergenic
GTTGCAGTGTCTGGTAACGC+AGG 0.694475 4_1:+81632242 None:intergenic
GTTGTCACTAGAGAAGAAGT+GGG 0.694605 4_1:-81631384 Msa0577330:CDS
TCTACCTTGTGCTACCACCA+AGG 0.697929 4_1:-81634987 Msa0577330:CDS
GAAGACAAGAAGGTTATGGG+AGG 0.705451 4_1:-81634044 Msa0577330:CDS
ACATAGATGACATCATTAGG+TGG 0.709990 4_1:+81634668 None:intergenic
CCAGACACTGCAACACATGG+TGG 0.710994 4_1:-81632233 Msa0577330:CDS
TGAAAACGGCGATACACCTG+TGG 0.720243 4_1:-81634801 Msa0577330:CDS
CGGACCAGATCTGACCGGAG+CGG 0.748187 4_1:+81635266 None:intergenic
TAGCTGCGATGTGAGGAATG+TGG 0.763594 4_1:-81634633 Msa0577330:CDS
AATCTTGCTTAACATCACCG+TGG 0.800564 4_1:+81633772 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATAATATTA+TGG - chr4_1:81632298-81632317 Msa0577330:CDS 0.0%
!!! TTATTTTTCATTTTTTTGAT+TGG - chr4_1:81633544-81633563 Msa0577330:CDS 10.0%
!!! ATAAGTTTAGTTTTAAAAAA+CGG + chr4_1:81633572-81633591 None:intergenic 10.0%
!!! TTTTTTATTTGAATATTTTC+AGG - chr4_1:81634979-81634998 Msa0577330:CDS 10.0%
!! AAATAAACAAATTGTTTATT+TGG + chr4_1:81635137-81635156 None:intergenic 10.0%
!! TAAAAAAACAAATTTCTATA+AGG + chr4_1:81635400-81635419 None:intergenic 10.0%
!! TGATGAAAATAAAAATTGAA+AGG + chr4_1:81630822-81630841 None:intergenic 15.0%
!! ATTCAATCAATAAATAACAA+AGG + chr4_1:81631160-81631179 None:intergenic 15.0%
!! ATTTAAATAACCAAACTTAT+CGG + chr4_1:81634481-81634500 None:intergenic 15.0%
!!! TGATATAAATTTATTTTCTC+AGG - chr4_1:81634626-81634645 Msa0577330:CDS 15.0%
!! ATAGTGAAAAATAAATACTA+GGG + chr4_1:81635481-81635500 None:intergenic 15.0%
!! AATAGTGAAAAATAAATACT+AGG + chr4_1:81635482-81635501 None:intergenic 15.0%
!!! ATGAAATTTTGTTAGTTGAT+TGG - chr4_1:81630888-81630907 Msa0577330:intron 20.0%
!! TGCAAACAACTAAATAATAA+AGG + chr4_1:81631040-81631059 None:intergenic 20.0%
!! AATTATATATCATGTAACCT+GGG - chr4_1:81632091-81632110 Msa0577330:intron 20.0%
!! TTAATATTGTATTGCATAAG+TGG + chr4_1:81632251-81632270 None:intergenic 20.0%
!!! TTAAGCAAATTTTGTTCTTT+GGG + chr4_1:81632771-81632790 None:intergenic 20.0%
!!! ATTAAGCAAATTTTGTTCTT+TGG + chr4_1:81632772-81632791 None:intergenic 20.0%
!! GATATATACACAAAAGATTA+TGG + chr4_1:81633246-81633265 None:intergenic 20.0%
!!! TTAAGTTTTTAAAACATGCT+GGG - chr4_1:81633413-81633432 Msa0577330:intron 20.0%
!!! AGTATTGGTTTTTATTCTAT+TGG - chr4_1:81633497-81633516 Msa0577330:intron 20.0%
!!! ACTAAACTTATACTACTTTT+AGG - chr4_1:81633581-81633600 Msa0577330:CDS 20.0%
!!! TTTTTCTCAAAATTCCTTTT+CGG + chr4_1:81634069-81634088 None:intergenic 20.0%
!! ATAAAATGATCAGAAAAGAA+AGG + chr4_1:81634352-81634371 None:intergenic 20.0%
!! TGAAATGAAATAATAGTGAA+AGG + chr4_1:81634522-81634541 None:intergenic 20.0%
!! GCAAAATATTATAAACTTGT+CGG + chr4_1:81634680-81634699 None:intergenic 20.0%
!! TAATGTAGCATAAAAATAAG+AGG - chr4_1:81634932-81634951 Msa0577330:CDS 20.0%
!! TAAACAAATTGTTTATTTGG+AGG + chr4_1:81635134-81635153 None:intergenic 20.0%
!!! TAACCATTTTTTAATCTGTT+TGG + chr4_1:81635234-81635253 None:intergenic 20.0%
!! TTTTGTAATTGAATGAACCT+GGG + chr4_1:81630965-81630984 None:intergenic 25.0%
! ATTCAATTACAAAAGGCTAA+TGG - chr4_1:81630971-81630990 Msa0577330:intron 25.0%
!! AATTGGCATCGTAATTTTAT+AGG - chr4_1:81631227-81631246 Msa0577330:CDS 25.0%
!! TTTTATAGGAATACCGAAAT+TGG - chr4_1:81631241-81631260 Msa0577330:CDS 25.0%
! TTTATAGGAATACCGAAATT+GGG - chr4_1:81631242-81631261 Msa0577330:CDS 25.0%
! TTGACATTGTATTAGGTATT+AGG + chr4_1:81631931-81631950 None:intergenic 25.0%
! TACCTAATACAATGTCAATT+TGG - chr4_1:81631933-81631952 Msa0577330:intron 25.0%
! AACCAAATTGACATTGTATT+AGG + chr4_1:81631938-81631957 None:intergenic 25.0%
! TGACAATATATGCATATACA+TGG - chr4_1:81632052-81632071 Msa0577330:intron 25.0%
!!! ATACATGGTTTTGTATTTGT+TGG - chr4_1:81632067-81632086 Msa0577330:intron 25.0%
! CAATTATATATCATGTAACC+TGG - chr4_1:81632090-81632109 Msa0577330:intron 25.0%
! TTGGGAAGATTCTTAAAATA+TGG + chr4_1:81632198-81632217 None:intergenic 25.0%
! AAAGAAAAAAGTCTTCTGAA+TGG - chr4_1:81633113-81633132 Msa0577330:CDS 25.0%
! AAAAGGAAGCAATAACAAAA+AGG - chr4_1:81633163-81633182 Msa0577330:CDS 25.0%
! TATAATCAATGAGAAAGAGA+GGG + chr4_1:81633300-81633319 None:intergenic 25.0%
! TTATAATCAATGAGAAAGAG+AGG + chr4_1:81633301-81633320 None:intergenic 25.0%
!! TTGATCAAGTAATTTTGAAC+AGG - chr4_1:81633369-81633388 Msa0577330:intron 25.0%
!!! GTTTTAAAAACTTAACCCAT+GGG + chr4_1:81633408-81633427 None:intergenic 25.0%
!!! TGTTTTAAAAACTTAACCCA+TGG + chr4_1:81633409-81633428 None:intergenic 25.0%
!!! GTTAAGTTTTTAAAACATGC+TGG - chr4_1:81633412-81633431 Msa0577330:intron 25.0%
!! TTCTCATTTTCCAACAAAAT+CGG + chr4_1:81633463-81633482 None:intergenic 25.0%
! GAATAAAAACCAATACTTAC+AGG + chr4_1:81633494-81633513 None:intergenic 25.0%
! AAATCTCTATGAACAGAAAT+TGG + chr4_1:81633881-81633900 None:intergenic 25.0%
!! TTTTCTCAAAATTCCTTTTC+GGG + chr4_1:81634068-81634087 None:intergenic 25.0%
!!! CTTGAGGTTTTATTTCTAAA+TGG + chr4_1:81634709-81634728 None:intergenic 25.0%
! ATAAAACCTCAAGTAAATTC+TGG - chr4_1:81634716-81634735 Msa0577330:CDS 25.0%
! AAAAAAATGGCAAAGTTACT+TGG + chr4_1:81634773-81634792 None:intergenic 25.0%
! CTGAATTTATTAAGTTACAC+GGG + chr4_1:81634879-81634898 None:intergenic 25.0%
! GCTGAATTTATTAAGTTACA+CGG + chr4_1:81634880-81634899 None:intergenic 25.0%
!! TATTTGGAGGAACAAATTTT+GGG + chr4_1:81635121-81635140 None:intergenic 25.0%
!! TTATTTGGAGGAACAAATTT+TGG + chr4_1:81635122-81635141 None:intergenic 25.0%
! CAACCAAACAGATTAAAAAA+TGG - chr4_1:81635228-81635247 Msa0577330:CDS 25.0%
!! TGCTGTATATACTCTTTTTA+CGG - chr4_1:81635442-81635461 Msa0577330:CDS 25.0%
GTTTATATATGTGTGTGTGA+TGG + chr4_1:81629887-81629906 None:intergenic 30.0%
TCAGCTGAAATTTCTGAATT+AGG - chr4_1:81630474-81630493 Msa0577330:intron 30.0%
CAGCTGAAATTTCTGAATTA+GGG - chr4_1:81630475-81630494 Msa0577330:intron 30.0%
GAAATTTCTGAATTAGGGTT+TGG - chr4_1:81630480-81630499 Msa0577330:intron 30.0%
!!! TTTGAACAGAGCTATTTTTC+CGG + chr4_1:81630782-81630801 None:intergenic 30.0%
TTCAAAGGAGTAAATCTGTA+AGG - chr4_1:81630796-81630815 Msa0577330:intron 30.0%
TTTCATCATTGCATATGTGT+TGG - chr4_1:81630834-81630853 Msa0577330:intron 30.0%
AACAATTTCAAAGGTAAACG+CGG + chr4_1:81630936-81630955 None:intergenic 30.0%
TTTGTAATTGAATGAACCTG+GGG + chr4_1:81630964-81630983 None:intergenic 30.0%
! CTTTTGTAATTGAATGAACC+TGG + chr4_1:81630966-81630985 None:intergenic 30.0%
CAGGTTCATTCAATTACAAA+AGG - chr4_1:81630964-81630983 Msa0577330:intron 30.0%
!!! ATTTAGTTTTACATGTGCGA+CGG - chr4_1:81631074-81631093 Msa0577330:CDS 30.0%
! GATACTATTGTACGTGATTT+TGG - chr4_1:81631113-81631132 Msa0577330:CDS 30.0%
TCATGATTATCAGATGTCAA+AGG + chr4_1:81631317-81631336 None:intergenic 30.0%
TTGACATCTGATAATCATGA+AGG - chr4_1:81631317-81631336 Msa0577330:CDS 30.0%
CAACTATCAATCTTAGTTTC+AGG + chr4_1:81631350-81631369 None:intergenic 30.0%
TAAATGCTTGAGTGAATCAA+AGG - chr4_1:81631472-81631491 Msa0577330:CDS 30.0%
TTAAGCAAGATTCTTTCAAC+AGG - chr4_1:81631558-81631577 Msa0577330:CDS 30.0%
ATCACATATTTCAGTATCAC+GGG + chr4_1:81631672-81631691 None:intergenic 30.0%
CATCACATATTTCAGTATCA+CGG + chr4_1:81631673-81631692 None:intergenic 30.0%
! TTATTTCTCTTATGGGCTTT+GGG + chr4_1:81631797-81631816 None:intergenic 30.0%
! ATTATTTCTCTTATGGGCTT+TGG + chr4_1:81631798-81631817 None:intergenic 30.0%
!! GAGTGGATTATTTCTCTTAT+GGG + chr4_1:81631804-81631823 None:intergenic 30.0%
!! TGAGTGGATTATTTCTCTTA+TGG + chr4_1:81631805-81631824 None:intergenic 30.0%
!! TATTTGTTTTCTGCCAGTTA+TGG - chr4_1:81631860-81631879 Msa0577330:CDS 30.0%
!! ATTTGTTTTCTGCCAGTTAT+GGG - chr4_1:81631861-81631880 Msa0577330:CDS 30.0%
TGTTTAAACTTCCACTATAG+TGG - chr4_1:81631994-81632013 Msa0577330:intron 30.0%
GTTCATAAACCATATTTGCA+CGG - chr4_1:81632126-81632145 Msa0577330:CDS 30.0%
TTCATAAACCATATTTGCAC+GGG - chr4_1:81632127-81632146 Msa0577330:CDS 30.0%
TATTCAAGTCAACTTTGTCA+TGG + chr4_1:81632482-81632501 None:intergenic 30.0%
!! CAAAGTTGACTTGAATACTT+TGG - chr4_1:81632485-81632504 Msa0577330:CDS 30.0%
! GTCAAATTGTATTGGCAATT+CGG + chr4_1:81632589-81632608 None:intergenic 30.0%
! TCTTTTGCGTCAAATTGTAT+TGG + chr4_1:81632597-81632616 None:intergenic 30.0%
ACAATTTGACGCAAAAGAAA+TGG - chr4_1:81632599-81632618 Msa0577330:CDS 30.0%
AATCTTATCACACACCATTA+CGG + chr4_1:81632727-81632746 None:intergenic 30.0%
TGTGATAAGATTGTCACAAA+TGG - chr4_1:81632735-81632754 Msa0577330:CDS 30.0%
ATAAGATTGTCACAAATGGT+GGG - chr4_1:81632739-81632758 Msa0577330:CDS 30.0%
TTGAATGATGCTCAAATGAA+AGG + chr4_1:81632815-81632834 None:intergenic 30.0%
TCTTCAGCATCTAACATATT+AGG + chr4_1:81632942-81632961 None:intergenic 30.0%
ACTAGATTCTTCATTTGAGA+TGG + chr4_1:81633027-81633046 None:intergenic 30.0%
!! TTGTTATTGCTTCCTTTTGA+AGG + chr4_1:81633161-81633180 None:intergenic 30.0%
!! TTAAAAGTATGCAGGTCTTT+TGG + chr4_1:81633270-81633289 None:intergenic 30.0%
! GGTAAATCTTAAAAGTATGC+AGG + chr4_1:81633278-81633297 None:intergenic 30.0%
ATAATCAATGAGAAAGAGAG+GGG + chr4_1:81633299-81633318 None:intergenic 30.0%
AGTCTAATTCCTGTAAGTAT+TGG - chr4_1:81633482-81633501 Msa0577330:intron 30.0%
! TGCAAGTTTGAATCTGAAAT+TGG + chr4_1:81633668-81633687 None:intergenic 30.0%
TTCAAATGATTGTGATCCTA+TGG - chr4_1:81633706-81633725 Msa0577330:CDS 30.0%
TCAAATGATTGTGATCCTAT+GGG - chr4_1:81633707-81633726 Msa0577330:CDS 30.0%
TATCTTGTAGTTGAGATCTT+GGG + chr4_1:81633808-81633827 None:intergenic 30.0%
TTATCTTGTAGTTGAGATCT+TGG + chr4_1:81633809-81633828 None:intergenic 30.0%
AACAGAAATTGGTGAAACAA+AGG + chr4_1:81633870-81633889 None:intergenic 30.0%
TTGATCTGTGACTTTCATTT+CGG + chr4_1:81634023-81634042 None:intergenic 30.0%
!! ATTTTGAGAAAAAACCCAAG+AGG - chr4_1:81634076-81634095 Msa0577330:intron 30.0%
!! TAACAACATGTTTCTGAGAT+GGG + chr4_1:81634230-81634249 None:intergenic 30.0%
ATAGTCATATCAACATCATG+TGG + chr4_1:81634311-81634330 None:intergenic 30.0%
CTTCACGATAATAACTGAAA+TGG - chr4_1:81634376-81634395 Msa0577330:CDS 30.0%
TTATTATGCAAAGCTTGTGA+TGG - chr4_1:81634431-81634450 Msa0577330:intron 30.0%
ATTATCTCATCCGATAAGTT+TGG - chr4_1:81634468-81634487 Msa0577330:intron 30.0%
TAATAGTGAAAGGAATTGCA+AGG + chr4_1:81634512-81634531 None:intergenic 30.0%
GGTCAAATGCACTAAAAAAA+TGG + chr4_1:81634786-81634805 None:intergenic 30.0%
! GCATATAAAGACGTTGATAA+TGG + chr4_1:81634902-81634921 None:intergenic 30.0%
TGTTAAGATCATCATTCATC+TGG + chr4_1:81635063-81635082 None:intergenic 30.0%
!! AGGAACAAATTTTGGGAATA+AGG + chr4_1:81635114-81635133 None:intergenic 30.0%
TTCGGATGATAGATAATGTA+AGG + chr4_1:81635263-81635282 None:intergenic 30.0%
TCCTAGAAACAATTTCTGTT+CGG + chr4_1:81635281-81635300 None:intergenic 30.0%
!!! GTGTTTTAAAACCAAATACC+TGG - chr4_1:81635319-81635338 Msa0577330:CDS 30.0%
GCAAACATAAAACGAAAAGT+GGG + chr4_1:81635425-81635444 None:intergenic 30.0%
AGCAAACATAAAACGAAAAG+TGG + chr4_1:81635426-81635445 None:intergenic 30.0%
TATATATGTGTGTGTGATGG+CGG + chr4_1:81629884-81629903 None:intergenic 35.0%
GTCTCGAAATGTGTGAAAAT+TGG + chr4_1:81629916-81629935 None:intergenic 35.0%
!! ATGGTTGATTCTTTTTGCTG+CGG + chr4_1:81630101-81630120 None:intergenic 35.0%
GTTACATCGTTTCCACAAAA+AGG + chr4_1:81630183-81630202 None:intergenic 35.0%
AACCAAAGGACTTTCAGATT+CGG - chr4_1:81630200-81630219 Msa0577330:intron 35.0%
CTTAACAAGATCGTCATCTT+CGG + chr4_1:81630277-81630296 None:intergenic 35.0%
! TCACGTTTTGCTTTCTTGAA+AGG + chr4_1:81630303-81630322 None:intergenic 35.0%
ATTCCCCTATCAAAATTCAG+AGG + chr4_1:81630582-81630601 None:intergenic 35.0%
AAGCTGTCAGATGAAGATTT+GGG - chr4_1:81630606-81630625 Msa0577330:intron 35.0%
ACATAGATGACATCATTAGG+TGG + chr4_1:81630654-81630673 None:intergenic 35.0%
CCTACATAGATGACATCATT+AGG + chr4_1:81630657-81630676 None:intergenic 35.0%
CCTAATGATGTCATCTATGT+AGG - chr4_1:81630654-81630673 Msa0577330:intron 35.0%
! GGAAAAATAGCTCTGTTCAA+AGG - chr4_1:81630781-81630800 Msa0577330:intron 35.0%
! AAAAGGCTAATGGATGCTAT+GGG - chr4_1:81630981-81631000 Msa0577330:intron 35.0%
GATGCTATGGGAGATAATTT+CGG - chr4_1:81630993-81631012 Msa0577330:intron 35.0%
! TTGGTAGTTGTTCTATGTAG+AGG - chr4_1:81631132-81631151 Msa0577330:CDS 35.0%
! AATTAGCTTGATATGTGCGA+TGG - chr4_1:81631200-81631219 Msa0577330:CDS 35.0%
ATATGTGCGATGGAACTAAT+TGG - chr4_1:81631210-81631229 Msa0577330:CDS 35.0%
TCATGACAATGACCCAATTT+CGG + chr4_1:81631257-81631276 None:intergenic 35.0%
TCATTGTCATGAAGACAAGA+AGG - chr4_1:81631265-81631284 Msa0577330:CDS 35.0%
TCATGAAGACAAGAAGGTTA+TGG - chr4_1:81631271-81631290 Msa0577330:CDS 35.0%
CATGAAGACAAGAAGGTTAT+GGG - chr4_1:81631272-81631291 Msa0577330:CDS 35.0%
! TAAGATTGATAGTTGCACCA+TGG - chr4_1:81631355-81631374 Msa0577330:CDS 35.0%
! AAGATTGATAGTTGCACCAT+GGG - chr4_1:81631356-81631375 Msa0577330:CDS 35.0%
TTCTCAGTATCTACTTGCAT+TGG + chr4_1:81631413-81631432 None:intergenic 35.0%
GTAGATACTGAGAAAGTGAA+TGG - chr4_1:81631419-81631438 Msa0577330:CDS 35.0%
AAGCATTTATCATCCACAGA+TGG + chr4_1:81631461-81631480 None:intergenic 35.0%
GAATAATCTTGACTGTGCTA+AGG - chr4_1:81631580-81631599 Msa0577330:CDS 35.0%
TGTGATGATATTGTGCTCAA+TGG - chr4_1:81631686-81631705 Msa0577330:CDS 35.0%
TATTTCTCTTATGGGCTTTG+GGG + chr4_1:81631796-81631815 None:intergenic 35.0%
CAAAATGTCTAACCCATAAC+TGG + chr4_1:81631876-81631895 None:intergenic 35.0%
AATCTTCCCAAAGATGACTA+TGG - chr4_1:81632207-81632226 Msa0577330:CDS 35.0%
TGGTTACCATAGTCATCTTT+GGG + chr4_1:81632216-81632235 None:intergenic 35.0%
!!! AAAGTGCTTGCTGATTTTAC+AGG - chr4_1:81632327-81632346 Msa0577330:CDS 35.0%
! TCTTGGAAAGATGGCAATTT+TGG + chr4_1:81632561-81632580 None:intergenic 35.0%
! AAATTGTATTGGCAATTCGG+AGG + chr4_1:81632586-81632605 None:intergenic 35.0%
GATAAGATTGTCACAAATGG+TGG - chr4_1:81632738-81632757 Msa0577330:CDS 35.0%
! AGCAAATTTTGTTCTTTGGG+TGG + chr4_1:81632768-81632787 None:intergenic 35.0%
ATGATGCTCAAATGAAAGGT+TGG + chr4_1:81632811-81632830 None:intergenic 35.0%
CATCATTCAAGCAATGAGAA+AGG - chr4_1:81632825-81632844 Msa0577330:CDS 35.0%
AGCTCAGAGTCTAAATCAAT+TGG - chr4_1:81632914-81632933 Msa0577330:CDS 35.0%
!!! CGTCATTTTTGCAAATTGCA+TGG + chr4_1:81632980-81632999 None:intergenic 35.0%
TTGCAAAAATGACGATGTTG+TGG - chr4_1:81632986-81633005 Msa0577330:intron 35.0%
GCATCTTTGAACCATTAACT+AGG + chr4_1:81633139-81633158 None:intergenic 35.0%
!!! AACAAAAAGGCTAGTTTTGC+TGG - chr4_1:81633176-81633195 Msa0577330:CDS 35.0%
TTTGCTGGTGAGATGAAAAA+TGG - chr4_1:81633191-81633210 Msa0577330:CDS 35.0%
TGGTGAGATGAAAAATGGTT+TGG - chr4_1:81633196-81633215 Msa0577330:CDS 35.0%
! TTTGGAATCCAATACTACAC+CGG - chr4_1:81633214-81633233 Msa0577330:intron 35.0%
CAAAAGATTATGGTTCTCAC+CGG + chr4_1:81633236-81633255 None:intergenic 35.0%
! AAGATTGCTTCCGATTTTGT+TGG - chr4_1:81633450-81633469 Msa0577330:intron 35.0%
!! TCCAAAAGCTTCTGAAGTTT+GGG + chr4_1:81633629-81633648 None:intergenic 35.0%
!! ATCCAAAAGCTTCTGAAGTT+TGG + chr4_1:81633630-81633649 None:intergenic 35.0%
! GAATCTGAAATTGGCAGAAA+TGG + chr4_1:81633659-81633678 None:intergenic 35.0%
CAATCATTTGAATCACTTCC+AGG + chr4_1:81633698-81633717 None:intergenic 35.0%
TACTTCCTTCATAAGGTCTT+GGG + chr4_1:81634206-81634225 None:intergenic 35.0%
ATACTTCCTTCATAAGGTCT+TGG + chr4_1:81634207-81634226 None:intergenic 35.0%
! CTAACAACATGTTTCTGAGA+TGG + chr4_1:81634231-81634250 None:intergenic 35.0%
ACTTGGAATTTCTCACCATA+GGG + chr4_1:81634756-81634775 None:intergenic 35.0%
TACTTGGAATTTCTCACCAT+AGG + chr4_1:81634757-81634776 None:intergenic 35.0%
TGAAACAGAACAACTTGCAA+AGG - chr4_1:81635027-81635046 Msa0577330:CDS 35.0%
CGATCTGAAAACTTAACACT+TGG + chr4_1:81635189-81635208 None:intergenic 35.0%
! TAAGTTTTCAGATCGTGTTG+AGG - chr4_1:81635194-81635213 Msa0577330:CDS 35.0%
! TCCGAACAGAAATTGTTTCT+AGG - chr4_1:81635277-81635296 Msa0577330:CDS 35.0%
!! ACAGAAATTGTTTCTAGGAG+TGG - chr4_1:81635282-81635301 Msa0577330:CDS 35.0%
! TTGTTGGCGGGAAAATTTTG+TGG + chr4_1:81629849-81629868 None:intergenic 40.0%
ATATATGTGTGTGTGATGGC+GGG + chr4_1:81629883-81629902 None:intergenic 40.0%
ACTTGAAACGGAACTTGAAC+CGG + chr4_1:81630076-81630095 None:intergenic 40.0%
!! TGGTTGATTCTTTTTGCTGC+GGG + chr4_1:81630100-81630119 None:intergenic 40.0%
GAATCAACCATACTCAGTTC+CGG - chr4_1:81630110-81630129 Msa0577330:CDS 40.0%
TCTTGAAACGGAACTTGAAC+CGG + chr4_1:81630132-81630151 None:intergenic 40.0%
TCCACAAAAAGGAACAGGAA+CGG + chr4_1:81630172-81630191 None:intergenic 40.0%
TCGTTTCCACAAAAAGGAAC+AGG + chr4_1:81630177-81630196 None:intergenic 40.0%
TGTGGAAACGATGTAACCAA+AGG - chr4_1:81630186-81630205 Msa0577330:intron 40.0%
TTCCGAATCTGAAAGTCCTT+TGG + chr4_1:81630205-81630224 None:intergenic 40.0%
CGAAGATGACGATCTTGTTA+AGG - chr4_1:81630275-81630294 Msa0577330:CDS 40.0%
ATCGGGAAGTAGCTGAATTA+GGG - chr4_1:81630406-81630425 Msa0577330:intron 40.0%
!! ATTAGGGTTTTATGCTCCGT+CGG - chr4_1:81630422-81630441 Msa0577330:intron 40.0%
TCGCCATCAATTGCTGAAAA+CGG - chr4_1:81630504-81630523 Msa0577330:intron 40.0%
!! ACGAGCCTCTGAATTTTGAT+AGG - chr4_1:81630574-81630593 Msa0577330:intron 40.0%
!! CGAGCCTCTGAATTTTGATA+GGG - chr4_1:81630575-81630594 Msa0577330:intron 40.0%
!! GAGCCTCTGAATTTTGATAG+GGG - chr4_1:81630576-81630595 Msa0577330:intron 40.0%
CAAATCTTCATCTGACAGCT+TGG + chr4_1:81630607-81630626 None:intergenic 40.0%
CAAGCTGTCAGATGAAGATT+TGG - chr4_1:81630605-81630624 Msa0577330:intron 40.0%
! TTTTCAGCTACATTAGCAGC+AGG + chr4_1:81630747-81630766 None:intergenic 40.0%
TGTAGCTGAAAATTCAAGCG+AGG - chr4_1:81630755-81630774 Msa0577330:intron 40.0%
GTAGCTGAAAATTCAAGCGA+GGG - chr4_1:81630756-81630775 Msa0577330:intron 40.0%
GTTGATTGGATTCTTGATGC+AGG - chr4_1:81630902-81630921 Msa0577330:intron 40.0%
!! GGGGCTTTGAACAATTTCAA+AGG + chr4_1:81630945-81630964 None:intergenic 40.0%
TTGAAATTGTTCAAAGCCCC+AGG - chr4_1:81630945-81630964 Msa0577330:intron 40.0%
! CAAAAGGCTAATGGATGCTA+TGG - chr4_1:81630980-81630999 Msa0577330:intron 40.0%
ATGCTTGAGTGAATCAAAGG+TGG - chr4_1:81631475-81631494 Msa0577330:CDS 40.0%
AATCTTGCTTAACATCACCG+TGG + chr4_1:81631550-81631569 None:intergenic 40.0%
ATTTCAGTATCACGGGTCAT+TGG + chr4_1:81631665-81631684 None:intergenic 40.0%
ACCTCAGAATGTCAAACCTA+TGG - chr4_1:81631727-81631746 Msa0577330:intron 40.0%
TCCATAGGTTTGACATTCTG+AGG + chr4_1:81631731-81631750 None:intergenic 40.0%
AGTGCTTTCTTGAGTGTTTC+TGG + chr4_1:81631759-81631778 None:intergenic 40.0%
CTTACATGTTTGCTCTTGAG+TGG + chr4_1:81631821-81631840 None:intergenic 40.0%
AATTTGGTTAAACCCTCAGC+TGG - chr4_1:81631949-81631968 Msa0577330:intron 40.0%
ATTTGGTTAAACCCTCAGCT+GGG - chr4_1:81631950-81631969 Msa0577330:intron 40.0%
CCTAAAAAAAACCCAGCTGA+GGG + chr4_1:81631964-81631983 None:intergenic 40.0%
!!! CCTCAGCTGGGTTTTTTTTA+GGG - chr4_1:81631962-81631981 Msa0577330:intron 40.0%
TAAACTTCCACTATAGTGGC+TGG - chr4_1:81631998-81632017 Msa0577330:intron 40.0%
TCCTATAGTTGACTGAACCA+GGG + chr4_1:81632167-81632186 None:intergenic 40.0%
GTGGTTACCATAGTCATCTT+TGG + chr4_1:81632217-81632236 None:intergenic 40.0%
ATAAGTGGTTGAAAACGTGG+TGG + chr4_1:81632236-81632255 None:intergenic 40.0%
TGCATAAGTGGTTGAAAACG+TGG + chr4_1:81632239-81632258 None:intergenic 40.0%
!! GCTGATTTTACAGGTACATC+TGG - chr4_1:81632336-81632355 Msa0577330:CDS 40.0%
!! CGCCTCTTCATTTTTGTGAT+GGG + chr4_1:81632370-81632389 None:intergenic 40.0%
CCATCACAAAAATGAAGAGG+CGG - chr4_1:81632368-81632387 Msa0577330:CDS 40.0%
! AGAGGCGGATTTATATGCAA+AGG - chr4_1:81632383-81632402 Msa0577330:CDS 40.0%
! TTTGAGATGGCAAAGGAAGT+TGG + chr4_1:81632413-81632432 None:intergenic 40.0%
!! TCTTCACTTTGAGATGGCAA+AGG + chr4_1:81632420-81632439 None:intergenic 40.0%
! GAAGCTTCTTCACTTTGAGA+TGG + chr4_1:81632426-81632445 None:intergenic 40.0%
CCATGAGATGACATATTAGC+AGG + chr4_1:81632531-81632550 None:intergenic 40.0%
CCTGCTAATATGTCATCTCA+TGG - chr4_1:81632528-81632547 Msa0577330:CDS 40.0%
AAGAAAGCAGTTTGTGAGTC+TGG - chr4_1:81632857-81632876 Msa0577330:CDS 40.0%
TGATTTAGACTCTGAGCTTC+AGG + chr4_1:81632912-81632931 None:intergenic 40.0%
CTTCTGAATGGCCTAGTTAA+TGG - chr4_1:81633125-81633144 Msa0577330:CDS 40.0%
GGTTCAAAGATGCCTTCAAA+AGG - chr4_1:81633146-81633165 Msa0577330:CDS 40.0%
!! CCAAAAGCTTCTGAAGTTTG+GGG + chr4_1:81633628-81633647 None:intergenic 40.0%
TCAAACTTGCAAGTAACTCC+TGG - chr4_1:81633677-81633696 Msa0577330:CDS 40.0%
TTTCCTGTACTATCACCCAT+AGG + chr4_1:81633725-81633744 None:intergenic 40.0%
GGTGATAGTACAGGAAATTC+TGG - chr4_1:81633728-81633747 Msa0577330:CDS 40.0%
AAGGAGTTCTCGAGATAGTA+GGG + chr4_1:81633851-81633870 None:intergenic 40.0%
AAAGGAGTTCTCGAGATAGT+AGG + chr4_1:81633852-81633871 None:intergenic 40.0%
GATTTACCAGTCACACCTTT+AGG - chr4_1:81633896-81633915 Msa0577330:CDS 40.0%
TGATCAGCTATAGGACCTAA+AGG + chr4_1:81633914-81633933 None:intergenic 40.0%
GTGACAACTTGATCAGCTAT+AGG + chr4_1:81633923-81633942 None:intergenic 40.0%
AGTTGTCACTAGAGAAGAAG+TGG - chr4_1:81633934-81633953 Msa0577330:CDS 40.0%
GTTGTCACTAGAGAAGAAGT+GGG - chr4_1:81633935-81633954 Msa0577330:CDS 40.0%
CAAATGCTCTTTCTGCATGA+AGG + chr4_1:81634144-81634163 None:intergenic 40.0%
GATGGGATACTTCCTTCATA+AGG + chr4_1:81634213-81634232 None:intergenic 40.0%
ATAGGGCCAGAATTTACTTG+AGG + chr4_1:81634725-81634744 None:intergenic 40.0%
TTGGAATTTCTCACCATAGG+GGG + chr4_1:81634754-81634773 None:intergenic 40.0%
CTTGGAATTTCTCACCATAG+GGG + chr4_1:81634755-81634774 None:intergenic 40.0%
GGAATAAGGTATGCACATAC+AGG + chr4_1:81635100-81635119 None:intergenic 40.0%
TTCAGATCGTGTTGAGGAAA+AGG - chr4_1:81635200-81635219 Msa0577330:CDS 40.0%
GCAGTAGGAGGAAAAATAGA+TGG - chr4_1:81635365-81635384 Msa0577330:CDS 40.0%
! GAACAAGGGTTTTTGTTGGC+GGG + chr4_1:81629861-81629880 None:intergenic 45.0%
! GGAACAAGGGTTTTTGTTGG+CGG + chr4_1:81629862-81629881 None:intergenic 45.0%
TGATCCGAAATTCCCGCAAA+CGG - chr4_1:81629971-81629990 Msa0577330:three_prime_UTR 45.0%
TTTGCTGCGGGAACTTGAAA+CGG + chr4_1:81630088-81630107 None:intergenic 45.0%
ACTTGAACCGGAACTGAGTA+TGG + chr4_1:81630120-81630139 None:intergenic 45.0%
! GGTTCAAGTTCCGTTTCAAG+AGG - chr4_1:81630075-81630094 Msa0577330:exon 45.0%
GAAGAGGGTTCCTCTTGAAA+CGG + chr4_1:81630144-81630163 None:intergenic 45.0%
AAAAGGAACAGGAACGGGAA+CGG + chr4_1:81630166-81630185 None:intergenic 45.0%
CCACAAAAAGGAACAGGAAC+GGG + chr4_1:81630171-81630190 None:intergenic 45.0%
CGAATTTATTCCCCACTTGC+CGG - chr4_1:81630369-81630388 Msa0577330:intron 45.0%
GATCGGGAAGTAGCTGAATT+AGG - chr4_1:81630405-81630424 Msa0577330:intron 45.0%
! TTCTGGAAAATGGCAGTGTG+AGG - chr4_1:81630445-81630464 Msa0577330:intron 45.0%
!! TCGCCGTTTTCAGCAATTGA+TGG + chr4_1:81630510-81630529 None:intergenic 45.0%
GAAGACAAGAAGGTTATGGG+AGG - chr4_1:81631275-81631294 Msa0577330:CDS 45.0%
AAGAAGGTTATGGGAGGTCA+GGG - chr4_1:81631281-81631300 Msa0577330:CDS 45.0%
ATTGGTGAAGATGCCAGTTC+TGG + chr4_1:81631395-81631414 None:intergenic 45.0%
GTGTTTATCTGTGCCATCTG+TGG - chr4_1:81631445-81631464 Msa0577330:CDS 45.0%
GAGTGAATCAAAGGTGGATC+TGG - chr4_1:81631481-81631500 Msa0577330:CDS 45.0%
! GATCTGGCTGCAGATTTTCT+GGG - chr4_1:81631497-81631516 Msa0577330:CDS 45.0%
TTTCTGGGTGCTAGAGATGT+TGG - chr4_1:81631512-81631531 Msa0577330:CDS 45.0%
!! GTTGGTAATGCTTTCGACCA+CGG - chr4_1:81631530-81631549 Msa0577330:CDS 45.0%
CAAAACACCAAGCTGCTCTA+AGG + chr4_1:81631627-81631646 None:intergenic 45.0%
! TCTGAGGTATGCTCTGCATT+TGG + chr4_1:81631715-81631734 None:intergenic 45.0%
!! GTGTTTCTGGTCAGATCCAT+AGG + chr4_1:81631746-81631765 None:intergenic 45.0%
!!! CCCTCAGCTGGGTTTTTTTT+AGG - chr4_1:81631961-81631980 Msa0577330:intron 45.0%
CCCTAAAAAAAACCCAGCTG+AGG + chr4_1:81631965-81631984 None:intergenic 45.0%
AAGTTCACCAGCCACTATAG+TGG + chr4_1:81632008-81632027 None:intergenic 45.0%
ATCAGCTTCCCGTGCAAATA+TGG + chr4_1:81632138-81632157 None:intergenic 45.0%
CCTATAGTTGACTGAACCAG+GGG + chr4_1:81632166-81632185 None:intergenic 45.0%
CTCCTATAGTTGACTGAACC+AGG + chr4_1:81632168-81632187 None:intergenic 45.0%
CTGGTTCAGTCAACTATAGG+AGG - chr4_1:81632166-81632185 Msa0577330:CDS 45.0%
TACAGGTACATCTGGTGATC+AGG - chr4_1:81632344-81632363 Msa0577330:CDS 45.0%
GGCCCATCACAAAAATGAAG+AGG - chr4_1:81632365-81632384 Msa0577330:CDS 45.0%
!! CCGCCTCTTCATTTTTGTGA+TGG + chr4_1:81632371-81632390 None:intergenic 45.0%
AGCAGACAAATGACTGTCAG+TGG - chr4_1:81632450-81632469 Msa0577330:CDS 45.0%
!! GGAAAGATGGCAATTTTGGC+TGG + chr4_1:81632557-81632576 None:intergenic 45.0%
! TCAGAGTTAGCCTCAACAGA+GGG + chr4_1:81632645-81632664 None:intergenic 45.0%
GACTGATCCTTGTTCCGTAA+TGG - chr4_1:81632710-81632729 Msa0577330:CDS 45.0%
TCACACACCATTACGGAACA+AGG + chr4_1:81632720-81632739 None:intergenic 45.0%
TTTAGACTCTGAGCTTCAGG+AGG + chr4_1:81632909-81632928 None:intergenic 45.0%
TTACCAGACACTGCAACACA+TGG - chr4_1:81633083-81633102 Msa0577330:intron 45.0%
! CCCCAAACTTCAGAAGCTTT+TGG - chr4_1:81633625-81633644 Msa0577330:CDS 45.0%
GATCCTATGGGTGATAGTAC+AGG - chr4_1:81633719-81633738 Msa0577330:CDS 45.0%
! ATAGGACCTAAAGGTGTGAC+TGG + chr4_1:81633905-81633924 None:intergenic 45.0%
TGATTTCTCCCTGTTGGACA+AGG + chr4_1:81633969-81633988 None:intergenic 45.0%
TTCAGGTGATTTCTCCCTGT+TGG + chr4_1:81633975-81633994 None:intergenic 45.0%
GAGAAATCACCTGAAACACC+TGG - chr4_1:81633980-81633999 Msa0577330:CDS 45.0%
CTGAAACACCTGGATGTTGT+CGG - chr4_1:81633990-81634009 Msa0577330:CDS 45.0%
ACAGATCAACTTGATGCCCT+TGG - chr4_1:81634034-81634053 Msa0577330:CDS 45.0%
!! TTTTCGGGAACTAACGCCAA+GGG + chr4_1:81634053-81634072 None:intergenic 45.0%
AAAAACCCAAGAGGATGCAG+AGG - chr4_1:81634085-81634104 Msa0577330:intron 45.0%
AAAACCCAAGAGGATGCAGA+GGG - chr4_1:81634086-81634105 Msa0577330:intron 45.0%
! TGTCAACGACACTCCTCTTT+TGG - chr4_1:81634267-81634286 Msa0577330:intron 45.0%
! AACGACACTCCTCTTTTGGA+TGG - chr4_1:81634271-81634290 Msa0577330:intron 45.0%
! TCCTCTTTTGGATGGAAGTC+AGG - chr4_1:81634279-81634298 Msa0577330:intron 45.0%
ACCTGACTTCCATCCAAAAG+AGG + chr4_1:81634283-81634302 None:intergenic 45.0%
TGGAATTTCTCACCATAGGG+GGG + chr4_1:81634753-81634772 None:intergenic 45.0%
TGTTTCAGATGCTTTCCTGC+AGG + chr4_1:81635014-81635033 None:intergenic 45.0%
! TTCTAGGAGTGGAACACATC+AGG - chr4_1:81635293-81635312 Msa0577330:CDS 45.0%
GGCAACTACTTCCAGGTATT+TGG + chr4_1:81635333-81635352 None:intergenic 45.0%
AATACCTGGAAGTAGTTGCC+TGG - chr4_1:81635333-81635352 Msa0577330:CDS 45.0%
!! TCCTACTGCTAGAAAGTACC+AGG + chr4_1:81635354-81635373 None:intergenic 45.0%
! TGGTACTTTCTAGCAGTAGG+AGG - chr4_1:81635353-81635372 Msa0577330:CDS 45.0%
! GCGGGAACAAGGGTTTTTGT+TGG + chr4_1:81629865-81629884 None:intergenic 50.0%
GGAATTTCGGATCACGTCCA+TGG + chr4_1:81629965-81629984 None:intergenic 50.0%
CGTTCCGTTTGCGGGAATTT+CGG + chr4_1:81629978-81629997 None:intergenic 50.0%
! CCCGTTCCTGTTCCTTTTTG+TGG - chr4_1:81630168-81630187 Msa0577330:intron 50.0%
TCTACCTTGTGCTACCACCA+AGG - chr4_1:81630332-81630351 Msa0577330:intron 50.0%
AATAAATTCGCCTCGCACGG+AGG + chr4_1:81630359-81630378 None:intergenic 50.0%
GGGAATAAATTCGCCTCGCA+CGG + chr4_1:81630362-81630381 None:intergenic 50.0%
TACTTCCCGATCAGAATCGC+CGG + chr4_1:81630397-81630416 None:intergenic 50.0%
!!! GTTTTATGCTCCGTCGGTTC+TGG - chr4_1:81630428-81630447 Msa0577330:intron 50.0%
!!! CTGCCATTTTCCAGAACCGA+CGG + chr4_1:81630441-81630460 None:intergenic 50.0%
GGAAAATGGCAGTGTGAGGA+CGG - chr4_1:81630449-81630468 Msa0577330:intron 50.0%
TGAAAACGGCGATACACCTG+TGG - chr4_1:81630518-81630537 Msa0577330:intron 50.0%
ATACACCTGTGGATGATGCG+AGG - chr4_1:81630529-81630548 Msa0577330:intron 50.0%
TTGATCCTCGCATCATCCAC+AGG + chr4_1:81630537-81630556 None:intergenic 50.0%
TAGAAGCTAGCTGCGATGTG+AGG - chr4_1:81630679-81630698 Msa0577330:intron 50.0%
TAGCTGCGATGTGAGGAATG+TGG - chr4_1:81630686-81630705 Msa0577330:intron 50.0%
CGATGTGAGGAATGTGGAAG+AGG - chr4_1:81630692-81630711 Msa0577330:intron 50.0%
CTGAAAATTCAAGCGAGGGC+CGG - chr4_1:81630760-81630779 Msa0577330:intron 50.0%
ACATGTGCGACGGAGCTAAT+TGG - chr4_1:81631084-81631103 Msa0577330:CDS 50.0%
CGACGGAGCTAATTGGCTAT+TGG - chr4_1:81631091-81631110 Msa0577330:CDS 50.0%
CAAGAAGGTTATGGGAGGTC+AGG - chr4_1:81631280-81631299 Msa0577330:CDS 50.0%
TGCACCATGGGTGATACCAA+TGG - chr4_1:81631368-81631387 Msa0577330:CDS 50.0%
GCACCATGGGTGATACCAAT+GGG - chr4_1:81631369-81631388 Msa0577330:CDS 50.0%
TGATACCAATGGGCCAGAAC+TGG - chr4_1:81631379-81631398 Msa0577330:CDS 50.0%
! GGATCTGGCTGCAGATTTTC+TGG - chr4_1:81631496-81631515 Msa0577330:CDS 50.0%
GCTAAGGCTGCTGATCACAA+TGG - chr4_1:81631596-81631615 Msa0577330:CDS 50.0%
GTAACCTGGGATGTCTTTGC+AGG - chr4_1:81632104-81632123 Msa0577330:intron 50.0%
TGAACCTGCAAAGACATCCC+AGG + chr4_1:81632111-81632130 None:intergenic 50.0%
CCCCTGGTTCAGTCAACTAT+AGG - chr4_1:81632163-81632182 Msa0577330:CDS 50.0%
TCGGAGGAGTCTTGGAAAGA+TGG + chr4_1:81632570-81632589 None:intergenic 50.0%
TTGGCAATTCGGAGGAGTCT+TGG + chr4_1:81632578-81632597 None:intergenic 50.0%
CTTATCTGCACCCTCTGTTG+AGG - chr4_1:81632632-81632651 Msa0577330:CDS 50.0%
! CTCAGAGTTAGCCTCAACAG+AGG + chr4_1:81632646-81632665 None:intergenic 50.0%
GGTTCTCACCGGTGTAGTAT+TGG + chr4_1:81633225-81633244 None:intergenic 50.0%
!! AGGTTCTAAATCGCTGCCCA+TGG - chr4_1:81633389-81633408 Msa0577330:intron 50.0%
!! GGTTCTAAATCGCTGCCCAT+GGG - chr4_1:81633390-81633409 Msa0577330:intron 50.0%
TACACCTGCCTTGTCCAACA+GGG - chr4_1:81633958-81633977 Msa0577330:CDS 50.0%
CGACAACATCCAGGTGTTTC+AGG + chr4_1:81633992-81634011 None:intergenic 50.0%
!! CTTTTCGGGAACTAACGCCA+AGG + chr4_1:81634054-81634073 None:intergenic 50.0%
CTTGGCGTTAGTTCCCGAAA+AGG - chr4_1:81634052-81634071 Msa0577330:CDS 50.0%
AAAGCCCTCTGCATCCTCTT+GGG + chr4_1:81634093-81634112 None:intergenic 50.0%
AAGGTCTTGGGCAACCTCTT+CGG + chr4_1:81634194-81634213 None:intergenic 50.0%
GGTTGCCCAAGACCTTATGA+AGG - chr4_1:81634198-81634217 Msa0577330:intron 50.0%
ACCATAGGGGGGACACTATA+GGG + chr4_1:81634742-81634761 None:intergenic 50.0%
TTCAGGTGAAAGAAGCCTGC+AGG - chr4_1:81634996-81635015 Msa0577330:CDS 50.0%
AGTACCAGGCAACTACTTCC+AGG + chr4_1:81635340-81635359 None:intergenic 50.0%
! GCCTGGTACTTTCTAGCAGT+AGG - chr4_1:81635350-81635369 Msa0577330:CDS 50.0%
!! GTGTGTGATGGCGGGAACAA+GGG + chr4_1:81629875-81629894 None:intergenic 55.0%
!! TGTGTGTGATGGCGGGAACA+AGG + chr4_1:81629876-81629895 None:intergenic 55.0%
! TCTGCTCTGCTCTGCTGCTT+TGG + chr4_1:81629938-81629957 None:intergenic 55.0%
AGATCGGACGTTCCGTTTGC+GGG + chr4_1:81629986-81630005 None:intergenic 55.0%
GAGATCGGACGTTCCGTTTG+CGG + chr4_1:81629987-81630006 None:intergenic 55.0%
AGCTTTGCTGCGGGTGAATG+TGG + chr4_1:81630025-81630044 None:intergenic 55.0%
TGAACCGGACCAGATCTGAC+CGG + chr4_1:81630061-81630080 None:intergenic 55.0%
ACAGGAACGGGAACGGAAGA+GGG + chr4_1:81630159-81630178 None:intergenic 55.0%
AACAGGAACGGGAACGGAAG+AGG + chr4_1:81630160-81630179 None:intergenic 55.0%
! AGGTCCTTGGTGGTAGCACA+AGG + chr4_1:81630339-81630358 None:intergenic 55.0%
!! GCTCCGTCGGTTCTGGAAAA+TGG - chr4_1:81630435-81630454 Msa0577330:intron 55.0%
TGGCCCATTGGTATCACCCA+TGG + chr4_1:81631375-81631394 None:intergenic 55.0%
! AGATGCCAGTTCTGGCCCAT+TGG + chr4_1:81631387-81631406 None:intergenic 55.0%
GGGAAGCTGATCAAAACCCC+TGG - chr4_1:81632147-81632166 Msa0577330:CDS 55.0%
! GTTGCAGTGTCTGGTAACGC+AGG + chr4_1:81633080-81633099 None:intergenic 55.0%
CCACCATGTGTTGCAGTGTC+TGG + chr4_1:81633089-81633108 None:intergenic 55.0%
CCAGACACTGCAACACATGG+TGG - chr4_1:81633086-81633105 Msa0577330:intron 55.0%
GACACTGCAACACATGGTGG+TGG - chr4_1:81633089-81633108 Msa0577330:intron 55.0%
GTACACCTGCCTTGTCCAAC+AGG - chr4_1:81633957-81633976 Msa0577330:CDS 55.0%
TTCTCCCTGTTGGACAAGGC+AGG + chr4_1:81633965-81633984 None:intergenic 55.0%
GACAAGCTCCGACAACATCC+AGG + chr4_1:81634001-81634020 None:intergenic 55.0%
CAAAGCCCTCTGCATCCTCT+TGG + chr4_1:81634094-81634113 None:intergenic 55.0%
TCAGCTGCTAGATGCCGAAG+AGG - chr4_1:81634177-81634196 Msa0577330:intron 55.0%
CACCATAGGGGGGACACTAT+AGG + chr4_1:81634743-81634762 None:intergenic 55.0%
AGAGCAGAGCAGAGCAGCCA+TGG - chr4_1:81629945-81629964 Msa0577330:three_prime_UTR 60.0%
AATGTGGATGAGGCGGGTGG+CGG + chr4_1:81630009-81630028 None:intergenic 60.0%
GTGAATGTGGATGAGGCGGG+TGG + chr4_1:81630012-81630031 None:intergenic 60.0%
CGGGTGAATGTGGATGAGGC+GGG + chr4_1:81630015-81630034 None:intergenic 60.0%
GCGGGTGAATGTGGATGAGG+CGG + chr4_1:81630016-81630035 None:intergenic 60.0%
GCTGCGGGTGAATGTGGATG+AGG + chr4_1:81630019-81630038 None:intergenic 60.0%
GGTACGGTGAGCTTTGCTGC+GGG + chr4_1:81630034-81630053 None:intergenic 60.0%
GGGTACGGTGAGCTTTGCTG+CGG + chr4_1:81630035-81630054 None:intergenic 60.0%
AAAGCTCACCGTACCCGCTC+CGG - chr4_1:81630039-81630058 Msa0577330:three_prime_UTR 60.0%
AGATCTGACCGGAGCGGGTA+CGG + chr4_1:81630050-81630069 None:intergenic 60.0%
GGCTGTGCCTTAGAGCAGCT+TGG - chr4_1:81631617-81631636 Msa0577330:CDS 60.0%
GCCCTATAGTGTCCCCCCTA+TGG - chr4_1:81634738-81634757 Msa0577330:CDS 60.0%
!! ATGAGGCGGGTGGCGGAGAT+CGG + chr4_1:81630002-81630021 None:intergenic 65.0%
GTACCCGCTCCGGTCAGATC+TGG - chr4_1:81630049-81630068 Msa0577330:three_prime_UTR 65.0%
GGACCAGATCTGACCGGAGC+GGG + chr4_1:81630055-81630074 None:intergenic 65.0%
CGGACCAGATCTGACCGGAG+CGG + chr4_1:81630056-81630075 None:intergenic 65.0%
CGCTCCGGTCAGATCTGGTC+CGG - chr4_1:81630054-81630073 Msa0577330:three_prime_UTR 65.0%
TATTCCCCACTTGCCGGCGC+CGG - chr4_1:81630375-81630394 Msa0577330:intron 65.0%
CCTCGCACGGAGGTCCTTGG+TGG + chr4_1:81630349-81630368 None:intergenic 70.0%
CCACCAAGGACCTCCGTGCG+AGG - chr4_1:81630346-81630365 Msa0577330:intron 70.0%
TCGCCTCGCACGGAGGTCCT+TGG + chr4_1:81630352-81630371 None:intergenic 70.0%
!! AATCGCCGGCGCCGGCAAGT+GGG + chr4_1:81630383-81630402 None:intergenic 70.0%
CCGATCAGAATCGCCGGCGC+CGG + chr4_1:81630391-81630410 None:intergenic 70.0%
!! CCGGCGCCGGCGATTCTGAT+CGG - chr4_1:81630388-81630407 Msa0577330:intron 70.0%
!! CGGCGCCGGCGATTCTGATC+GGG - chr4_1:81630389-81630408 Msa0577330:intron 70.0%
!! ATCGCCGGCGCCGGCAAGTG+GGG + chr4_1:81630382-81630401 None:intergenic 75.0%
!! GAATCGCCGGCGCCGGCAAG+TGG + chr4_1:81630384-81630403 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 81629823 81635518 81629823 ID=Msa0577330;Name=Msa0577330
chr4_1 mRNA 81629823 81635518 81629823 ID=Msa0577330-mRNA-1;Parent=Msa0577330;Name=Msa0577330-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|1|0.88|1|1|1|9|264|1212
chr4_1 exon 81629823 81630167 81629823 ID=Msa0577330-mRNA-1:exon:29390;Parent=Msa0577330-mRNA-1
chr4_1 exon 81630242 81630340 81630242 ID=Msa0577330-mRNA-1:exon:29389;Parent=Msa0577330-mRNA-1
chr4_1 exon 81631041 81631738 81631041 ID=Msa0577330-mRNA-1:exon:29388;Parent=Msa0577330-mRNA-1
chr4_1 exon 81631848 81631950 81631848 ID=Msa0577330-mRNA-1:exon:29387;Parent=Msa0577330-mRNA-1
chr4_1 exon 81632106 81632992 81632106 ID=Msa0577330-mRNA-1:exon:29386;Parent=Msa0577330-mRNA-1
chr4_1 exon 81633113 81633215 81633113 ID=Msa0577330-mRNA-1:exon:29385;Parent=Msa0577330-mRNA-1
chr4_1 exon 81633506 81634092 81633506 ID=Msa0577330-mRNA-1:exon:29384;Parent=Msa0577330-mRNA-1
chr4_1 exon 81634327 81634417 81634327 ID=Msa0577330-mRNA-1:exon:29383;Parent=Msa0577330-mRNA-1
chr4_1 exon 81634529 81635518 81634529 ID=Msa0577330-mRNA-1:exon:29382;Parent=Msa0577330-mRNA-1
chr4_1 CDS 81634529 81635518 81634529 ID=Msa0577330-mRNA-1:cds;Parent=Msa0577330-mRNA-1
chr4_1 CDS 81634327 81634417 81634327 ID=Msa0577330-mRNA-1:cds;Parent=Msa0577330-mRNA-1
chr4_1 CDS 81633506 81634092 81633506 ID=Msa0577330-mRNA-1:cds;Parent=Msa0577330-mRNA-1
chr4_1 CDS 81633113 81633215 81633113 ID=Msa0577330-mRNA-1:cds;Parent=Msa0577330-mRNA-1
chr4_1 CDS 81632106 81632992 81632106 ID=Msa0577330-mRNA-1:cds;Parent=Msa0577330-mRNA-1
chr4_1 CDS 81631848 81631950 81631848 ID=Msa0577330-mRNA-1:cds;Parent=Msa0577330-mRNA-1
chr4_1 CDS 81631041 81631738 81631041 ID=Msa0577330-mRNA-1:cds;Parent=Msa0577330-mRNA-1
chr4_1 CDS 81630242 81630340 81630242 ID=Msa0577330-mRNA-1:cds;Parent=Msa0577330-mRNA-1
chr4_1 CDS 81630087 81630167 81630087 ID=Msa0577330-mRNA-1:cds;Parent=Msa0577330-mRNA-1
chr4_1 three_prime_UTR 81629823 81630086 81629823 ID=Msa0577330-mRNA-1:three_prime_utr;Parent=Msa0577330-mRNA-1
Gene Sequence

>Msa0577330

TTGGATTTTTATCAGAAATCACGCCACAAAATTTTCCCGCCAACAAAAACCCTTGTTCCCGCCATCACACACACATATATAAACAGCGCGCCAATTTTCACACATTTCGAGACCAAAGCAGCAGAGCAGAGCAGAGCAGCCATGGACGTGATCCGAAATTCCCGCAAACGGAACGTCCGATCTCCGCCACCCGCCTCATCCACATTCACCCGCAGCAAAGCTCACCGTACCCGCTCCGGTCAGATCTGGTCCGGTTCAAGTTCCGTTTCAAGTTCCCGCAGCAAAAAGAATCAACCATACTCAGTTCCGGTTCAAGTTCCGTTTCAAGAGGAACCCTCTTCCGTTCCCGTTCCTGTTCCTTTTTGTGGAAACGATGTAACCAAAGGACTTTCAGATTCGGAATTCAAGAATCTAATTCATGATATTTGCAATGAATATTGTGAATCAGATTCCGAAGATGACGATCTTGTTAAGGATCCTTTCAAGAAAGCAAAACGTGATGATGCTAATCTACCTTGTGCTACCACCAAGGACCTCCGTGCGAGGCGAATTTATTCCCCACTTGCCGGCGCCGGCGATTCTGATCGGGAAGTAGCTGAATTAGGGTTTTATGCTCCGTCGGTTCTGGAAAATGGCAGTGTGAGGACGGAATCAGCTGAAATTTCTGAATTAGGGTTTGGATCGCCATCAATTGCTGAAAACGGCGATACACCTGTGGATGATGCGAGGATCAAATCTAATAAGATTCTCGACGAGCCTCTGAATTTTGATAGGGGAATCACCAAGCTGTCAGATGAAGATTTGGGCGAAGAATCATTACAAACGACACCACCTAATGATGTCATCTATGTAGGTTTAGAAGCTAGCTGCGATGTGAGGAATGTGGAAGAGGCAGACACACTTGTTGTCAAAGATATGTCTCCTGCTGCTAATGTAGCTGAAAATTCAAGCGAGGGCCGGAAAAATAGCTCTGTTCAAAGGAGTAAATCTGTACTCAAACCGCGTTTACCTTTGAAATTGTTCAAAGCCCCAGGTTCATTCAATTACAAAAGGCTAATGGATGCTATGGGAGATAATTTCGGAATACCGAAATTGGGTCATTGTCATGAAGACAAGAAGGTTATGGGAGGTCAGGGATTGAAACTTCCTTTGACATCTGATAATCATGAAGGTTCTAAGCCTGAAACTAAGATTGATAGTTGCACCATGGGTGATACCAATGGGCCAGAACTGGCATCTTCACCAATGCAAGTAGATACTGAGAAAGTGAATGGCGAGTGTTTATCTGTGCCATCTGTGGATGATAAATGCTTGAGTGAATCAAAGGTGGATCTGGCTGCAGATTTTCTGGGTGCTAGAGATGTTGGTAATGCTTTCGACCACGGTGATGTTAAGCAAGATTCTTTCAACAGGAATAATCTTGACTGTGCTAAGGCTGCTGATCACAATGGCTGTGCCTTAGAGCAGCTTGGTGTTTTGAATGAAGATTGTATACCAATGACCCGTGATACTGAAATATGTGATGATATTGTGCTCAATGGAGACCAAATGCAGAGCATACCTCAGAATGTCAAACCTATGGATCTGACCAGAAACACTCAAGAAAGCACTGTTGAAGCGTTATACCCCAAAGCCCATAAGAGAAATAATCCACTCAAGAGCAAACATGTTCATAAACCATATTTGCACGGGAAGCTGATCAAAACCCCTGGTTCAGTCAACTATAGGAGGTTGCTTCCATATTTTAAGAATCTTCCCAAAGATGACTATGGTACATCTGGTGATCAGGCCCATCACAAAAATGAAGAGGCGGATTTATATGCAAAGGAGTTCCAACTTCCTTTGCCATCTCAAAGTGAAGAAGCTTCTATTAGCAGACAAATGACTGTCAGTGGCTCTATCCATGACAAAGTTGACTTGAATACTTTGGAAAACAACATCTCAGTCAATCCTGCTAATATGTCATCTCATGGCTACCAGCCAAAATTGCCATCTTTCCAAGACTCCTCCGAATTGCCAATACAATTTGACGCAAAAGAAATGGCACATGAGTGCTTATCTGCACCCTCTGTTGAGGCTAACTCTGAGAAAACTGTCATCAGTTCTAAAGATGAATGCTTGAGTGAATCAGCGACTGATCCTTGTTCCGTAATGGTGTGTGATAAGATTGTCACAAATGGTGGGTCACCACCCAAAGAACAAAATTTGCTTAATGTCAATAATGATATCTCCAACCTTTCATTTGAGCATCATTCAAGCAATGAGAAAGGATTCACTGAAAGAAAGCAGTTTGTGAGTCTGGAGAAGCATGAATCTGTTAGCAGATGTCCTCCTGAAGCTCAGAGTCTAAATCAATTGGATCCTAATATGTTAGATGCTGAAGAGAATGAAACAAGCAGCCATGCAATTTGCAAAAATGACGATGTTGTGGTTTTATGTCACGTCACCATCTCAAATGAAGAATCTAGTTCACAATCAGAGAAGATTATTTCTGAAAAACCTGCGTTACCAGACACTGCAACACATGGTGGTGGCAAAGAAAAAAGTCTTCTGAATGGCCTAGTTAATGGTTCAAAGATGCCTTCAAAAGGAAGCAATAACAAAAAGGCTAGTTTTGCTGGTGAGATGAAAAATGGTTTGGAATCCAATACTACACCGGTTCTAAATCGCTGCCCATGGGTTAAGTTTTTAAAACATGCTGGGTCTTTGAACTACAAAAGATTGCTTCCGATTTTGTTGGAAAATGAGAAGTCTAATTCCTGTGCTTCGAATAATGATCATCGCCCCAAACTTCAGAAGCTTTTGGATCACACACCATTTCTGCCAATTTCAGATTCAAACTTGCAAGTAACTCCTGGAAGTGATTCAAATGATTGTGATCCTATGGGTGATAGTACAGGAAATTCTGGTGCTCAGCAAGAAACAGAGTTGCAAGCTTGTGACTTAAATAGTGATAGTTTAAGCCCAAGATCTCAACTACAAGATAAACAGATTGTGTCAAATAGACCCTACTATCTCGAGAACTCCTTTGTTTCACCAATTTCTGTTCATAGAGATTTACCAGTCACACCTTTAGGTCCTATAGCTGATCAAGTTGTCACTAGAGAAGAAGTGGGTACACCTGCCTTGTCCAACAGGGAGAAATCACCTGAAACACCTGGATGTTGTCGGAGCTTGTCCGAAATGAAAGTCACAGATCAACTTGATGCCCTTGGCGTTAGTTCCCGAAAAGGAATTTTGAGAAAAAACCCAAGAGGATGCAGAGGGCTTTGCACATGTTTGAACTGTGTTTCTTTTCGCCTTCATGCAGAAAGAGCATTTGAATTTTCTAGAAATCAGCTGCTAGATGCCGAAGAGGTTGCCCAAGACCTTATGAAGGAAGTATCCCATCTCAGAAACATGTTGTTAGAAAGATGTACTGATAATGTCAACGACACTCCTCTTTTGGATGGAAGTCAGGTGAAAGAAGCCTGCAGGAAAGCATCTGAAACAGAACAACTTGCAAAGGATCGACTTAGCCAGATGAATGATGATCTTAACATACATTGCAGAACACCTAGTCTGCAGCGACCAAGTGTTAAGTTTTCAGATCGTGTTGAGGAAAAGGTCATTCAACCAAACAGATTAAAAAATGGTTAA
Protein sequence

>Msa0577330

LDFYQKSRHKIFPPTKTLVPAITHTYINSAPIFTHFETKAAEQSRAAMDVIRNSRKRNVRSPPPASSTFTRSKAHRTRSGQIWSGSSSVSSSRSKKNQPYSVPVQVPFQEEPSSVPVPVPFCGNDVTKGLSDSEFKNLIHDICNEYCESDSEDDDLVKDPFKKAKRDDANLPCATTKDLRARRIYSPLAGAGDSDREVAELGFYAPSVLENGSVRTESAEISELGFGSPSIAENGDTPVDDARIKSNKILDEPLNFDRGITKLSDEDLGEESLQTTPPNDVIYVGLEASCDVRNVEEADTLVVKDMSPAANVAENSSEGRKNSSVQRSKSVLKPRLPLKLFKAPGSFNYKRLMDAMGDNFGIPKLGHCHEDKKVMGGQGLKLPLTSDNHEGSKPETKIDSCTMGDTNGPELASSPMQVDTEKVNGECLSVPSVDDKCLSESKVDLAADFLGARDVGNAFDHGDVKQDSFNRNNLDCAKAADHNGCALEQLGVLNEDCIPMTRDTEICDDIVLNGDQMQSIPQNVKPMDLTRNTQESTVEALYPKAHKRNNPLKSKHVHKPYLHGKLIKTPGSVNYRRLLPYFKNLPKDDYGTSGDQAHHKNEEADLYAKEFQLPLPSQSEEASISRQMTVSGSIHDKVDLNTLENNISVNPANMSSHGYQPKLPSFQDSSELPIQFDAKEMAHECLSAPSVEANSEKTVISSKDECLSESATDPCSVMVCDKIVTNGGSPPKEQNLLNVNNDISNLSFEHHSSNEKGFTERKQFVSLEKHESVSRCPPEAQSLNQLDPNMLDAEENETSSHAICKNDDVVVLCHVTISNEESSSQSEKIISEKPALPDTATHGGGKEKSLLNGLVNGSKMPSKGSNNKKASFAGEMKNGLESNTTPVLNRCPWVKFLKHAGSLNYKRLLPILLENEKSNSCASNNDHRPKLQKLLDHTPFLPISDSNLQVTPGSDSNDCDPMGDSTGNSGAQQETELQACDLNSDSLSPRSQLQDKQIVSNRPYYLENSFVSPISVHRDLPVTPLGPIADQVVTREEVGTPALSNREKSPETPGCCRSLSEMKVTDQLDALGVSSRKGILRKNPRGCRGLCTCLNCVSFRLHAERAFEFSRNQLLDAEEVAQDLMKEVSHLRNMLLERCTDNVNDTPLLDGSQVKEACRKASETEQLAKDRLSQMNDDLNIHCRTPSLQRPSVKFSDRVEEKVIQPNRLKNG*