AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1330180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1330180 MtrunA17_Chr4g0058091 97.318 522 6 1 1 522 1 514 0.0 1038
Msa1330180 MtrunA17_Chr3g0116561 73.450 516 129 1 7 522 2 509 0.0 780
Msa1330180 MtrunA17_Chr4g0001841 83.453 278 14 2 30 307 20 265 3.04e-158 451
Msa1330180 MtrunA17_Chr4g0001851 84.106 151 8 1 353 503 1 135 1.05e-83 255
Msa1330180 MtrunA17_Chr8g0383711 27.397 292 200 6 234 521 14 297 1.79e-31 123
Msa1330180 MtrunA17_Chr4g0067151 29.457 258 170 6 233 483 73 325 1.25e-29 119
Msa1330180 MtrunA17_Chr4g0067151 26.792 265 175 7 271 521 18 277 3.65e-19 88.6
Msa1330180 MtrunA17_Chr7g0253861 27.206 272 193 2 234 500 51 322 1.10e-27 114
Msa1330180 MtrunA17_Chr7g0253861 27.143 210 138 6 318 521 51 251 5.82e-15 76.3
Msa1330180 MtrunA17_Chr1g0185891 25.962 312 206 8 226 521 281 583 4.14e-24 106
Msa1330180 MtrunA17_Chr1g0185891 33.019 106 65 3 297 400 272 373 5.10e-12 68.6
Msa1330180 MtrunA17_Chr4g0057141 25.962 312 206 8 226 521 342 644 5.11e-24 105
Msa1330180 MtrunA17_Chr4g0057141 33.019 106 65 3 297 400 333 434 7.12e-12 68.2
Msa1330180 MtrunA17_Chr8g0392701 26.948 308 176 9 249 521 27 320 2.24e-22 98.2
Msa1330180 MtrunA17_Chr8g0392701 25.632 277 174 8 231 483 56 324 6.65e-17 82.0
Msa1330180 MtrunA17_Chr8g0392701 27.027 222 140 7 314 521 7 220 1.56e-13 71.6
Msa1330180 MtrunA17_Chr1g0185501 26.073 303 214 6 227 521 12 312 3.42e-22 97.4
Msa1330180 MtrunA17_Chr6g0448921 27.049 244 168 5 232 470 7 245 1.36e-20 95.9
Msa1330180 MtrunA17_Chr6g0448921 24.887 221 156 4 292 509 29 242 2.91e-16 82.0
Msa1330180 MtrunA17_Chr6g0448921 24.103 195 146 2 229 422 50 243 1.03e-12 70.9
Msa1330180 MtrunA17_Chr6g0448921 21.154 208 153 4 318 521 12 212 1.99e-11 66.6
Msa1330180 MtrunA17_Chr2g0281451 26.906 223 157 3 253 474 31 248 1.86e-20 95.5
Msa1330180 MtrunA17_Chr2g0281451 26.974 152 109 2 236 386 98 248 2.85e-15 79.3
Msa1330180 MtrunA17_Chr2g0281451 23.684 228 164 4 293 517 29 249 1.70e-14 76.6
Msa1330180 MtrunA17_Chr4g0059031 26.394 269 175 8 271 522 350 612 1.41e-17 86.3
Msa1330180 MtrunA17_Chr4g0059031 31.351 185 116 5 261 435 41 224 2.11e-16 82.8
Msa1330180 MtrunA17_Chr1g0200901 24.912 285 199 7 233 512 118 392 6.91e-17 82.8
Msa1330180 MtrunA17_Chr1g0200901 24.306 288 155 8 232 506 74 311 4.37e-11 65.1
Msa1330180 MtrunA17_Chr8g0390861 24.542 273 191 6 255 521 840 1103 7.47e-17 84.3
Msa1330180 MtrunA17_Chr8g0390861 26.119 268 163 13 234 479 949 1203 4.57e-13 72.4
Msa1330180 MtrunA17_Chr2g0295791 22.222 261 185 7 232 485 163 412 3.45e-16 81.3
Msa1330180 MtrunA17_Chr8g0352821 22.635 296 181 5 229 522 216 465 2.10e-15 79.3
Msa1330180 MtrunA17_Chr3g0136971 27.815 302 188 11 226 521 337 614 4.34e-15 78.2
Msa1330180 MtrunA17_Chr3g0136971 21.951 205 158 2 234 437 415 618 9.31e-12 67.8
Msa1330180 MtrunA17_Chr1g0176241 27.660 141 101 1 210 350 342 481 1.11e-14 76.6
Msa1330180 MtrunA17_Chr1g0176241 25.630 238 146 7 253 479 264 481 1.18e-11 67.0
Msa1330180 MtrunA17_Chr1g0172501 22.807 285 210 5 240 522 277 553 1.53e-14 76.3
Msa1330180 MtrunA17_Chr4g0053651 23.000 300 172 6 231 520 323 573 1.77e-14 76.3
Msa1330180 MtrunA17_Chr3g0093681 22.807 285 210 5 240 522 277 553 2.35e-14 75.9
Msa1330180 MtrunA17_Chr3g0095501 24.522 314 209 11 223 521 255 555 9.27e-14 73.9
Msa1330180 MtrunA17_Chr5g0401661 23.381 278 195 6 253 520 411 680 5.19e-13 71.6
Msa1330180 MtrunA17_Chr5g0401671 24.172 302 166 7 231 520 340 590 6.92e-13 71.2
Msa1330180 MtrunA17_Chr2g0284241 23.693 287 193 8 253 522 23 300 1.74e-12 68.6
Msa1330180 MtrunA17_Chr1g0162961 23.113 212 141 3 248 437 86 297 2.21e-12 68.9
Msa1330180 MtrunA17_Chr4g0070791 24.812 266 169 8 253 497 33 288 5.64e-12 67.0
Msa1330180 MtrunA17_Chr3g0099061 22.422 223 144 7 288 490 222 435 8.59e-12 67.4
Msa1330180 MtrunA17_Chr3g0099061 27.108 166 107 4 336 491 227 388 9.88e-12 67.4
Msa1330180 MtrunA17_Chr7g0246741 25.243 206 146 4 289 491 378 578 8.86e-12 67.8
Msa1330180 MtrunA17_Chr6g0449701 23.381 278 173 9 282 521 110 385 1.01e-11 67.4
Msa1330180 MtrunA17_Chr2g0292301 23.377 231 162 5 253 481 225 442 1.25e-11 67.0
Msa1330180 MtrunA17_Chr2g0294611 24.188 277 161 9 233 479 239 496 1.44e-11 67.4
Msa1330180 MtrunA17_Chr4g0035611 26.394 269 166 12 233 493 46 290 1.69e-11 67.4
Msa1330180 MtrunA17_Chr1g0168391 25.000 204 147 4 240 439 226 427 3.70e-11 65.5
Msa1330180 MtrunA17_Chr1g0183051 24.127 315 207 14 225 521 203 503 6.22e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1330180 AT5G50230.1 69.903 515 147 1 8 522 3 509 0.0 775
Msa1330180 AT5G64730.1 26.490 302 216 4 221 521 1 297 6.87e-30 119
Msa1330180 AT3G49660.1 28.682 258 168 5 234 483 67 316 1.67e-29 118
Msa1330180 AT3G49660.1 25.581 301 205 6 234 522 20 313 1.39e-27 113
Msa1330180 AT2G43770.1 26.838 272 194 2 234 500 49 320 1.76e-28 116
Msa1330180 AT2G43770.1 26.923 208 141 5 318 521 49 249 4.36e-15 77.0
Msa1330180 AT1G48630.1 26.403 303 185 8 249 521 27 321 2.01e-22 98.6
Msa1330180 AT1G48630.1 26.087 276 171 8 233 483 58 325 1.01e-17 84.7
Msa1330180 AT1G48630.1 25.455 220 146 7 314 521 7 220 1.05e-12 69.7
Msa1330180 AT3G18130.1 26.733 303 184 8 249 521 27 321 3.42e-22 97.8
Msa1330180 AT3G18130.1 26.087 276 171 8 233 483 58 325 1.77e-17 84.0
Msa1330180 AT3G18130.1 25.000 220 147 7 314 521 7 220 1.17e-11 66.6
Msa1330180 AT1G10580.1 24.038 312 212 8 226 521 270 572 6.23e-21 96.7
Msa1330180 AT3G16650.1 25.191 262 175 8 232 485 163 411 8.81e-21 95.9
Msa1330180 AT5G23430.1 28.111 217 150 4 232 443 7 222 1.47e-20 96.3
Msa1330180 AT5G23430.1 25.229 218 153 4 293 507 30 240 2.10e-15 79.7
Msa1330180 AT5G23430.1 24.103 195 146 2 229 422 50 243 1.23e-11 67.8
Msa1330180 AT5G23430.3 28.111 217 150 4 232 443 7 222 1.52e-20 96.3
Msa1330180 AT5G23430.3 25.229 218 153 4 293 507 30 240 2.16e-15 79.7
Msa1330180 AT5G23430.3 24.103 195 146 2 229 422 50 243 1.21e-11 67.8
Msa1330180 AT5G23430.2 28.111 217 150 4 232 443 7 222 1.52e-20 96.3
Msa1330180 AT5G23430.2 25.229 218 153 4 293 507 30 240 2.16e-15 79.7
Msa1330180 AT5G23430.2 24.103 195 146 2 229 422 50 243 1.21e-11 67.8
Msa1330180 AT1G11160.2 27.165 254 174 6 232 479 6 254 1.60e-20 96.3
Msa1330180 AT1G11160.2 23.348 227 168 3 292 517 28 249 8.58e-13 71.6
Msa1330180 AT1G11160.1 27.165 254 174 6 232 479 6 254 1.63e-20 96.3
Msa1330180 AT1G11160.1 23.744 219 161 3 292 509 28 241 8.97e-13 71.6
Msa1330180 AT1G18080.1 25.484 310 180 9 249 521 27 322 1.64e-20 93.2
Msa1330180 AT1G18080.1 28.440 218 143 6 314 521 7 221 4.49e-15 77.0
Msa1330180 AT1G18080.1 23.827 277 177 8 233 483 58 326 2.26e-14 74.7
Msa1330180 AT1G11160.4 27.165 254 174 6 232 479 6 254 1.70e-20 96.3
Msa1330180 AT1G11160.4 23.348 227 168 3 292 517 28 249 9.96e-13 71.6
Msa1330180 AT5G08390.1 28.571 217 149 4 232 443 7 222 2.81e-20 95.1
Msa1330180 AT5G08390.1 24.074 216 158 3 293 507 30 240 6.39e-15 78.6
Msa1330180 AT5G08390.1 22.564 195 149 2 229 422 50 243 5.27e-11 65.9
Msa1330180 AT5G08390.1 25.974 154 104 3 234 382 97 245 6.38e-11 65.5
Msa1330180 AT4G15900.1 23.970 267 173 9 232 485 169 418 3.28e-19 90.9
Msa1330180 AT4G02730.1 25.704 284 202 6 222 498 23 304 4.01e-19 89.0
Msa1330180 AT4G02730.1 21.654 254 186 7 275 521 38 285 1.94e-13 72.0
Msa1330180 AT1G61210.3 26.872 227 160 4 232 453 6 231 6.24e-18 88.2
Msa1330180 AT1G61210.3 24.324 222 156 5 292 509 28 241 1.54e-12 70.9
Msa1330180 AT1G61210.3 25.157 159 116 3 234 391 96 252 7.90e-12 68.6
Msa1330180 AT5G13480.2 23.469 294 179 4 229 521 167 415 6.68e-18 87.4
Msa1330180 AT5G13480.3 23.469 294 179 4 229 521 144 392 8.43e-18 87.0
Msa1330180 AT5G13480.4 23.469 294 179 4 229 521 144 392 1.09e-17 86.7
Msa1330180 AT1G04510.1 29.952 207 136 4 240 439 224 428 1.09e-17 86.7
Msa1330180 AT1G61210.1 26.872 227 160 4 232 453 6 231 1.16e-17 87.4
Msa1330180 AT1G61210.1 24.324 222 156 5 292 509 28 241 3.27e-12 70.1
Msa1330180 AT1G61210.1 25.157 159 116 3 234 391 96 252 1.19e-11 68.2
Msa1330180 AT1G61210.2 26.872 227 160 4 232 453 6 231 1.18e-17 87.4
Msa1330180 AT1G61210.2 24.324 222 156 5 292 509 28 241 3.33e-12 70.1
Msa1330180 AT1G61210.2 25.157 159 116 3 234 391 96 252 1.30e-11 68.2
Msa1330180 AT1G04510.2 29.952 207 136 4 240 439 224 428 1.20e-17 86.3
Msa1330180 AT5G13480.1 23.469 294 179 4 229 521 156 404 1.22e-17 86.7
Msa1330180 AT5G52820.1 22.849 337 214 11 227 521 97 429 1.51e-17 85.9
Msa1330180 AT5G52820.1 26.816 179 111 3 172 350 313 471 2.02e-14 76.3
Msa1330180 AT5G16750.1 26.038 265 177 6 272 521 350 610 5.28e-16 82.0
Msa1330180 AT5G16750.1 26.512 215 149 5 262 469 42 254 5.30e-15 78.6
Msa1330180 AT5G16750.1 23.443 273 175 8 229 479 392 652 2.32e-11 67.0
Msa1330180 AT3G27640.1 24.911 281 169 8 282 521 130 409 1.63e-15 79.7
Msa1330180 AT3G27640.2 24.911 281 169 8 282 521 111 390 1.77e-15 79.7
Msa1330180 AT5G43920.1 25.806 310 208 11 226 521 212 513 2.17e-15 79.3
Msa1330180 AT2G33340.2 23.601 411 271 13 118 515 123 503 2.83e-15 79.0
Msa1330180 AT2G33340.1 23.601 411 271 13 118 515 123 503 2.83e-15 79.0
Msa1330180 AT1G49040.1 26.937 271 171 12 249 506 866 1122 2.92e-15 79.7
Msa1330180 AT1G49040.1 23.616 271 179 8 262 521 836 1089 5.34e-14 75.5
Msa1330180 AT1G49040.1 24.862 181 125 6 241 417 944 1117 1.20e-12 71.2
Msa1330180 AT1G11160.3 26.087 207 146 4 275 479 11 212 3.22e-15 79.3
Msa1330180 AT1G11160.3 27.922 154 109 2 234 386 54 206 3.76e-14 75.9
Msa1330180 AT1G11160.3 25.123 203 146 3 316 517 10 207 2.01e-12 70.5
Msa1330180 AT2G33340.3 23.853 327 220 8 118 438 123 426 4.40e-15 78.2
Msa1330180 AT3G18140.1 24.373 279 197 7 253 522 8 281 1.04e-14 75.5
Msa1330180 AT3G18140.1 25.000 184 122 5 243 414 124 303 8.08e-11 63.5
Msa1330180 AT5G67320.1 23.264 288 162 5 234 511 361 599 1.12e-14 77.4
Msa1330180 AT4G03020.1 26.104 249 164 6 283 521 232 470 1.39e-14 76.6
Msa1330180 AT4G03020.2 26.104 249 164 6 283 521 232 470 1.39e-14 76.6
Msa1330180 AT4G03020.3 26.104 249 164 6 283 521 232 470 1.39e-14 76.6
Msa1330180 AT3G49180.1 24.645 211 142 3 251 444 91 301 9.78e-14 73.9
Msa1330180 AT5G08560.1 23.944 284 164 10 286 521 280 559 1.32e-13 73.9
Msa1330180 AT5G08560.2 23.944 284 164 10 286 521 280 559 1.32e-13 73.9
Msa1330180 AT5G08560.3 23.944 284 164 10 286 521 280 559 1.32e-13 73.9
Msa1330180 AT5G25150.1 26.367 311 177 11 226 521 340 613 1.64e-13 73.6
Msa1330180 AT5G25150.1 22.439 205 157 2 234 437 414 617 6.10e-11 65.5
Msa1330180 AT5G25150.2 26.367 311 177 12 226 521 340 613 1.68e-13 73.6
Msa1330180 AT5G25150.2 22.439 205 157 2 234 437 414 617 6.69e-11 65.5
Msa1330180 AT2G47410.2 28.249 177 109 3 233 391 230 406 1.87e-13 73.9
Msa1330180 AT2G47410.1 28.249 177 109 3 233 391 231 407 1.89e-13 73.9
Msa1330180 AT2G47410.4 28.249 177 109 3 233 391 49 225 2.10e-13 73.9
Msa1330180 AT2G21390.1 24.000 275 172 7 233 476 46 314 7.78e-13 72.0
Msa1330180 AT2G47410.6 26.768 198 127 3 233 428 49 230 1.21e-12 71.2
Msa1330180 AT2G47410.3 26.768 198 127 3 233 428 49 230 1.21e-12 71.2
Msa1330180 AT2G16405.1 23.881 268 178 9 276 521 212 475 1.29e-12 70.5
Msa1330180 AT4G29830.1 23.810 294 195 7 235 506 11 297 1.32e-12 69.3
Msa1330180 AT2G47410.5 26.768 198 127 3 233 428 231 412 1.34e-12 71.2
Msa1330180 AT2G41500.1 23.140 242 174 6 285 522 303 536 1.63e-12 70.5
Msa1330180 AT2G41500.1 23.320 253 182 6 234 482 294 538 2.10e-12 70.1
Msa1330180 AT2G41500.2 23.140 242 174 6 285 522 303 536 1.63e-12 70.5
Msa1330180 AT2G41500.2 23.320 253 182 6 234 482 294 538 2.10e-12 70.1
Msa1330180 AT2G22040.1 25.134 187 125 4 243 417 130 313 1.72e-12 68.9
Msa1330180 AT2G22040.1 23.693 287 191 9 253 522 13 288 1.77e-12 68.9
Msa1330180 AT1G71840.1 23.841 302 208 10 232 521 64 355 2.65e-12 68.9
Msa1330180 AT3G15610.1 23.810 273 195 7 253 521 34 297 3.40e-12 68.2
Msa1330180 AT1G73720.1 22.489 458 304 16 54 490 6 433 4.15e-12 68.9
Msa1330180 AT1G73720.1 24.848 165 111 3 336 491 226 386 7.88e-12 68.2
Msa1330180 AT5G49430.2 26.570 207 128 4 233 437 240 424 3.82e-11 66.6
Msa1330180 AT5G49430.1 26.570 207 128 4 233 437 240 424 3.82e-11 66.6
Msa1330180 AT1G62020.1 22.909 275 175 7 233 476 46 314 5.48e-11 65.9
Msa1330180 AT2G26490.1 26.820 261 157 13 252 499 146 385 5.72e-11 65.1
Msa1330180 AT5G14530.1 22.727 308 206 10 208 503 8 295 8.42e-11 63.9

Find 135 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCACTAACTTGATTGAATT+AGG 0.191856 8_4:-49326342 None:intergenic
AATTGTATTATACCTCATTT+AGG 0.266216 8_4:-49327692 None:intergenic
TTAACAGAGTGGCTTCTAAT+TGG 0.280252 8_4:+49329330 Msa1330180:CDS
TTGTACGTGGGACCTATTTC+CGG 0.282993 8_4:+49326273 Msa1330180:five_prime_UTR
TCCTTAAGTTCAAGTCTTAC+TGG 0.289367 8_4:+49328798 Msa1330180:CDS
CCACTAACTTGATTGAATTA+GGG 0.296830 8_4:-49326341 None:intergenic
ACCATTGTTGTTGTTGTGTT+TGG 0.308418 8_4:-49326377 None:intergenic
ACGACCGTACTATAAAAGTT+TGG 0.316749 8_4:+49329015 Msa1330180:CDS
CTCTCAATTAAAGACGGATT+TGG 0.319744 8_4:+49327515 Msa1330180:CDS
CGAGTCCGTCATACCCTTAC+TGG 0.338442 8_4:+49328924 Msa1330180:CDS
TCAATCGCAACTTGTTCTTT+CGG 0.343457 8_4:-49326413 None:intergenic
TTGTTTCAATCTGGTCATAA+TGG 0.359886 8_4:+49329537 Msa1330180:CDS
CTTCTGTTCTCTGTTGTAGC+TGG 0.366870 8_4:+49329471 Msa1330180:CDS
GCAAAGAGCATTGCAGTTGC+TGG 0.371762 8_4:-49329078 None:intergenic
TCAATATCCCTTTCTCGAAA+TGG 0.373411 8_4:+49329218 Msa1330180:CDS
ACAACAACAATGGTGAAAAC+TGG 0.379287 8_4:+49326386 Msa1330180:exon
TCGATGGTAATCTTCGGTTA+TGG 0.380769 8_4:+49329138 Msa1330180:CDS
ATCGACATGTCCAGAAAATA+TGG 0.387589 8_4:-49329120 None:intergenic
CGACCGTACTATAAAAGTTT+GGG 0.390463 8_4:+49329016 Msa1330180:CDS
TGGCTGCCTTGGCTCAGTAT+TGG 0.392787 8_4:+49328818 Msa1330180:CDS
GGTATGGGATTGTTTCTATC+TGG 0.393142 8_4:+49329604 Msa1330180:three_prime_UTR
AATTCTAGTAGATTGATTAC+TGG 0.396540 8_4:+49328732 Msa1330180:CDS
GAAAGAGAAAGCAGAGAACT+TGG 0.396574 8_4:+49327044 Msa1330180:CDS
TCAAGTCTTACTGGCTGCCT+TGG 0.397402 8_4:+49328807 Msa1330180:CDS
TTCTAGACCCATCGTTTCTC+AGG 0.404660 8_4:+49326517 Msa1330180:CDS
CCCTAATTCAATCAAGTTAG+TGG 0.407311 8_4:+49326341 Msa1330180:five_prime_UTR
AGAATTGTACTCGAACAATA+AGG 0.407571 8_4:-49328715 None:intergenic
CAATATTTCCATTTCGAGAA+AGG 0.408563 8_4:-49329226 None:intergenic
CTGATGGATCTGTGCATATA+TGG 0.411583 8_4:+49329402 Msa1330180:CDS
GGAATGGAATTGTTTCAATC+TGG 0.416661 8_4:+49329528 Msa1330180:CDS
CGATGGTAATCTTCGGTTAT+GGG 0.416788 8_4:+49329139 Msa1330180:CDS
TTCAGAACTGAAAACACAAC+TGG 0.427251 8_4:+49327578 Msa1330180:CDS
TTAAGAAAATCTAACAGGTA+TGG 0.435974 8_4:+49329588 Msa1330180:three_prime_UTR
AAGACATGGTTCAGCGGCTA+AGG 0.439770 8_4:+49328550 Msa1330180:CDS
ATTCCTGTCAGCTGAAGCTA+GGG 0.443091 8_4:-49329510 None:intergenic
AATATTTCCATTTCGAGAAA+GGG 0.445723 8_4:-49329225 None:intergenic
CAGTCTTACTTAATATCTAA+AGG 0.445934 8_4:+49329781 Msa1330180:three_prime_UTR
CTTTATCCGTGTGTCCAGTA+AGG 0.447371 8_4:-49328938 None:intergenic
TAAGAAAATCTAACAGGTAT+GGG 0.449668 8_4:+49329589 Msa1330180:three_prime_UTR
TTTGTTTGATGTGCGATCTC+TGG 0.451133 8_4:+49329280 Msa1330180:CDS
GCCAGTAAGACTTGAACTTA+AGG 0.454568 8_4:-49328799 None:intergenic
ATTAGTTTGCCGCTGTTCCT+AGG 0.458763 8_4:-49329903 None:intergenic
TCCCTTCCAATTGCAAATAC+AGG 0.460830 8_4:+49328664 Msa1330180:CDS
AGACTAGAGAGACCGGAAAT+AGG 0.462990 8_4:-49326285 None:intergenic
TATCTAACCATGCCATTGGC+AGG 0.464224 8_4:+49329870 Msa1330180:three_prime_UTR
AGTCTTACTTAATATCTAAA+GGG 0.465889 8_4:+49329782 Msa1330180:three_prime_UTR
CATTCCTGTCAGCTGAAGCT+AGG 0.467857 8_4:-49329511 None:intergenic
AATAACAGATCGATTATCAT+TGG 0.473031 8_4:-49328853 None:intergenic
GCTCTTTGCTTCAGCACAGA+TGG 0.474209 8_4:+49329092 Msa1330180:CDS
CTAGAAAGTGCGAGAAAAGC+AGG 0.474966 8_4:-49326500 None:intergenic
CTTTAGATATTAAGTAAGAC+TGG 0.475563 8_4:-49329780 None:intergenic
GACAACAATCATGTTGCCGC+TGG 0.477287 8_4:+49329374 Msa1330180:CDS
ATTTAGCCTGTATTTGCAAT+TGG 0.481713 8_4:-49328670 None:intergenic
AAGTTGTTCCTTGTTTAGAC+AGG 0.483019 8_4:+49329695 Msa1330180:three_prime_UTR
GAAAGCAGAGAACTTGGAAG+TGG 0.488324 8_4:+49327050 Msa1330180:CDS
AACCCCTAGCTTCAGCTGAC+AGG 0.489230 8_4:+49329507 Msa1330180:CDS
ATTCTAGTAGATTGATTACT+GGG 0.491572 8_4:+49328733 Msa1330180:CDS
GCGGCAACATGATTGTTGTC+TGG 0.492362 8_4:-49329371 None:intergenic
TGTTGTAGCTGGAGTGGAAT+GGG 0.499332 8_4:+49329482 Msa1330180:CDS
AGCCTGTATTTGCAATTGGA+AGG 0.502314 8_4:-49328666 None:intergenic
AAACGCCATCTTCTCGAAGA+AGG 0.507490 8_4:+49326467 Msa1330180:CDS
GCCTGTATTTGCAATTGGAA+GGG 0.520159 8_4:-49328665 None:intergenic
CATATATGGTCAATATCTAA+AGG 0.520412 8_4:+49329416 Msa1330180:CDS
GAGCGCCTTCTTCGAGAAGA+TGG 0.521377 8_4:-49326472 None:intergenic
GACATGTCGATGGTAATCTT+CGG 0.525301 8_4:+49329132 Msa1330180:CDS
AAAGTTTGGGACTTGATGAA+AGG 0.527945 8_4:+49329029 Msa1330180:CDS
CAAAGAGCATTGCAGTTGCT+GGG 0.531625 8_4:-49329077 None:intergenic
AATTTATCTAACCATGCCAT+TGG 0.532907 8_4:+49329866 Msa1330180:three_prime_UTR
TACTTCCACAACAAGTTGCT+CGG 0.532958 8_4:-49327109 None:intergenic
GTTGCCGCTGGGTCTACTGA+TGG 0.534764 8_4:+49329386 Msa1330180:CDS
GTGCAAATTATCCCTTCCAC+TGG 0.536187 8_4:-49329255 None:intergenic
GTTCTCTGTTGTAGCTGGAG+TGG 0.537003 8_4:+49329476 Msa1330180:CDS
AAAGTGTGGGATACAAATAC+AGG 0.539323 8_4:+49328774 Msa1330180:CDS
ATTGTTCGTCGAAGTGAAGA+AGG 0.542555 8_4:+49328615 Msa1330180:CDS
TATGTGTGGGATCTTAGCTC+AGG 0.543218 8_4:+49328900 Msa1330180:CDS
CTAGCTTCAGCTGACAGGAA+TGG 0.547140 8_4:+49329512 Msa1330180:CDS
AGAAGGAGTTGACAGAATTG+AGG 0.554456 8_4:+49327193 Msa1330180:CDS
TTTCTATCTGGTCATAGTGA+CGG 0.558867 8_4:+49329616 Msa1330180:three_prime_UTR
GTGCGATCTCTGGAAGTTTG+TGG 0.559305 8_4:+49329290 Msa1330180:CDS
CTTGATGTTAGAAAAGATGA+AGG 0.562481 8_4:+49327659 Msa1330180:CDS
TGAAATAATCAGTACTCTGA+AGG 0.562507 8_4:+49329439 Msa1330180:CDS
GTTATCCGAGCAACTTGTTG+TGG 0.566280 8_4:+49327104 Msa1330180:CDS
CTCAAACAACTTGTATGTGT+GGG 0.569983 8_4:+49328887 Msa1330180:CDS
CAGGTGGAGACTAGAGAGAC+CGG 0.577073 8_4:-49326292 None:intergenic
GCTCAAACAACTTGTATGTG+TGG 0.578898 8_4:+49328886 Msa1330180:CDS
CTGTTGTAGCTGGAGTGGAA+TGG 0.580319 8_4:+49329481 Msa1330180:CDS
ATTACCACCTGCCAATGGCA+TGG 0.581760 8_4:-49329877 None:intergenic
AGACATGGTTCAGCGGCTAA+GGG 0.586487 8_4:+49328551 Msa1330180:CDS
ACAACTTGCAAGGGAACAAG+TGG 0.587447 8_4:+49328587 Msa1330180:CDS
GTTCAGCGGCTAAGGGCTAG+TGG 0.589500 8_4:+49328558 Msa1330180:CDS
ATATTGCATTGACCAGTGGA+AGG 0.590280 8_4:+49329243 Msa1330180:CDS
TGCGATTTCTGATATGCAGA+AGG 0.591509 8_4:+49327176 Msa1330180:CDS
GGATGCTGAACGCCTAAATG+AGG 0.592570 8_4:+49327680 Msa1330180:CDS
AATGCTATAAAGCTCAATCT+CGG 0.592904 8_4:+49327082 Msa1330180:CDS
TACAGGCTAAATGCACATGA+AGG 0.593778 8_4:+49328681 Msa1330180:CDS
ACAACAATCATGTTGCCGCT+GGG 0.594947 8_4:+49329375 Msa1330180:CDS
GTGGTCTAGAACAACTTGCA+AGG 0.596866 8_4:+49328577 Msa1330180:CDS
TTTATCCGTGTGTCCAGTAA+GGG 0.597962 8_4:-49328937 None:intergenic
TATGGGACATTCAGAGTGGA+AGG 0.603476 8_4:+49329156 Msa1330180:CDS
TTGTGCGGTTGATGTTAGCA+AGG 0.604078 8_4:+49328962 Msa1330180:CDS
ATGATCTACTTATTTGTACG+TGG 0.604095 8_4:+49326260 Msa1330180:five_prime_UTR
GGTTAATTACCACCTGCCAA+TGG 0.605064 8_4:-49329882 None:intergenic
AGGATCGTTCAGTTAAAGTG+TGG 0.609417 8_4:+49328760 Msa1330180:CDS
GGATCGTTCAGTTAAAGTGT+GGG 0.613938 8_4:+49328761 Msa1330180:CDS
CTTGCAAGGGAACAAGTGGA+TGG 0.615284 8_4:+49328591 Msa1330180:CDS
GGAAATATTGCATTGACCAG+TGG 0.615284 8_4:+49329239 Msa1330180:CDS
TGGTCTAGAACAACTTGCAA+GGG 0.618737 8_4:+49328578 Msa1330180:CDS
TGATCTACTTATTTGTACGT+GGG 0.620905 8_4:+49326261 Msa1330180:five_prime_UTR
TTCCTGTCAGCTGAAGCTAG+GGG 0.627368 8_4:-49329509 None:intergenic
TATTGCATTGACCAGTGGAA+GGG 0.632302 8_4:+49329244 Msa1330180:CDS
ACCAAACACAACAACAACAA+TGG 0.632413 8_4:+49326376 Msa1330180:exon
TCTAGTAGATTGATTACTGG+GGG 0.632682 8_4:+49328735 Msa1330180:CDS
GGTACGTACCTGAGAAACGA+TGG 0.636424 8_4:-49326525 None:intergenic
TGTGTCCAGTAAGGGTATGA+CGG 0.638602 8_4:-49328929 None:intergenic
TCATACCCTTACTGGACACA+CGG 0.639635 8_4:+49328932 Msa1330180:CDS
TGGCAGGTGGTAATTAACCT+AGG 0.643923 8_4:+49329886 Msa1330180:three_prime_UTR
GAGTGGAAGGCTGCTAAGTG+AGG 0.644822 8_4:+49329169 Msa1330180:CDS
TGAGATCCAATACTGAGCCA+AGG 0.644864 8_4:-49328824 None:intergenic
AGAAAGGGATATTGACGTGA+CGG 0.645528 8_4:-49329210 None:intergenic
AATGGTGTCCTGTCTAAACA+AGG 0.646342 8_4:-49329703 None:intergenic
ATCTGGTCATAGTGACGGTG+TGG 0.646777 8_4:+49329621 Msa1330180:three_prime_UTR
AGGCTAAATGCACATGAAGG+AGG 0.648402 8_4:+49328684 Msa1330180:CDS
TGAGTGCTCTCAATTAAAGA+CGG 0.653157 8_4:+49327509 Msa1330180:CDS
TATATGAAGACATGGTTCAG+CGG 0.657419 8_4:+49328544 Msa1330180:CDS
GTACGTACCTGAGAAACGAT+GGG 0.661026 8_4:-49326524 None:intergenic
AAATGCGCTATATGAAGACA+TGG 0.661275 8_4:+49328536 Msa1330180:CDS
TTCTAGTAGATTGATTACTG+GGG 0.672008 8_4:+49328734 Msa1330180:CDS
CGGTTATGGGACATTCAGAG+TGG 0.682375 8_4:+49329152 Msa1330180:CDS
GGTAATTAACCTAGGAACAG+CGG 0.683386 8_4:+49329894 Msa1330180:three_prime_UTR
CTAACCATGCCATTGGCAGG+TGG 0.683421 8_4:+49329873 Msa1330180:three_prime_UTR
ACACACGGATAAAGTTTGTG+CGG 0.689247 8_4:+49328947 Msa1330180:CDS
AGAAGCCACTCTGTTAACTG+TGG 0.703135 8_4:-49329324 None:intergenic
ATCTGGTCATAATGGCTGTG+TGG 0.714659 8_4:+49329545 Msa1330180:exon
ACGAGCCACAGTTAACAGAG+TGG 0.730751 8_4:+49329319 Msa1330180:CDS
AGATCCATCAGTAGACCCAG+CGG 0.753123 8_4:-49329390 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAACAATTTTCATTTTTTTT+AGG + chr8_4:49326555-49326574 Msa1330180:intron 10.0%
!!! AACAATTTTCATTTTTTTTA+GGG + chr8_4:49326556-49326575 Msa1330180:intron 10.0%
!! AATGAAAATTGTTAATGAAA+GGG - chr8_4:49326549-49326568 None:intergenic 15.0%
!! AAATGAAAATTGTTAATGAA+AGG - chr8_4:49326550-49326569 None:intergenic 15.0%
!! AAAGGAAACAATAAAAAAAA+TGG - chr8_4:49326616-49326635 None:intergenic 15.0%
!! AAAAACTCTTATAAGTTTAT+AGG - chr8_4:49328000-49328019 None:intergenic 15.0%
!! AAATGTATTATTAGTTGAAT+CGG - chr8_4:49328501-49328520 None:intergenic 15.0%
!!! CTATTTTACAGTTTTTAAAT+TGG + chr8_4:49329654-49329673 Msa1330180:three_prime_UTR 15.0%
!!! TTTTATTGTTTCCTTTATTG+TGG + chr8_4:49326620-49326639 Msa1330180:intron 20.0%
!! TTTATTGTTTCCTTTATTGT+GGG + chr8_4:49326621-49326640 Msa1330180:intron 20.0%
!! ATGATTGAACTAATTTCTTA+CGG - chr8_4:49326648-49326667 None:intergenic 20.0%
!!! AATTTACCTATTTTTAACTG+TGG + chr8_4:49326864-49326883 Msa1330180:intron 20.0%
!! ATTATCACAAACTAAAAATG+TGG - chr8_4:49327449-49327468 None:intergenic 20.0%
!! AATTGTATTATACCTCATTT+AGG - chr8_4:49327695-49327714 None:intergenic 20.0%
!! ATAAAAAAGTTCGATTAAAC+GGG - chr8_4:49327834-49327853 None:intergenic 20.0%
!! GATAAAAAAGTTCGATTAAA+CGG - chr8_4:49327835-49327854 None:intergenic 20.0%
!! ACATCATTCAAAAAATTCAA+TGG - chr8_4:49329724-49329743 None:intergenic 20.0%
!! AGTCTTACTTAATATCTAAA+GGG + chr8_4:49329782-49329801 Msa1330180:three_prime_UTR 20.0%
! TAATTCAATGTGATCACATA+TGG - chr8_4:49326779-49326798 None:intergenic 25.0%
! AACTTTCCACAGTTAAAAAT+AGG - chr8_4:49326873-49326892 None:intergenic 25.0%
!!! TTTTAACTGTGGAAAGTTAT+TGG + chr8_4:49326875-49326894 Msa1330180:intron 25.0%
! TGATGTATTTATGTTGTTGA+AGG + chr8_4:49327011-49327030 Msa1330180:intron 25.0%
! GATGTATTTATGTTGTTGAA+GGG + chr8_4:49327012-49327031 Msa1330180:intron 25.0%
! TTGTACTAAATAGTGTATCT+TGG - chr8_4:49327314-49327333 None:intergenic 25.0%
! TACAAAATGTTGTCAAATAG+CGG + chr8_4:49327329-49327348 Msa1330180:intron 25.0%
! AAATTAATGTTGCAAAATGC+AGG + chr8_4:49327484-49327503 Msa1330180:intron 25.0%
! AATTAATGTTGCAAAATGCA+GGG + chr8_4:49327485-49327504 Msa1330180:intron 25.0%
! AAGTTGAAATGAATTTGCAA+TGG + chr8_4:49327873-49327892 Msa1330180:intron 25.0%
! AACTCATAGTGCATAATATT+TGG + chr8_4:49328214-49328233 Msa1330180:intron 25.0%
!!! TGAAAAGAAAAAGTACTAAC+TGG - chr8_4:49328333-49328352 None:intergenic 25.0%
! AATTCTAGTAGATTGATTAC+TGG + chr8_4:49328732-49328751 Msa1330180:CDS 25.0%
! ATTCTAGTAGATTGATTACT+GGG + chr8_4:49328733-49328752 Msa1330180:CDS 25.0%
! AATAACAGATCGATTATCAT+TGG - chr8_4:49328856-49328875 None:intergenic 25.0%
! AATATTTCCATTTCGAGAAA+GGG - chr8_4:49329228-49329247 None:intergenic 25.0%
! CATATATGGTCAATATCTAA+AGG + chr8_4:49329416-49329435 Msa1330180:CDS 25.0%
!!! CAGTTTTAAGAAAATCTAAC+AGG + chr8_4:49329583-49329602 Msa1330180:three_prime_UTR 25.0%
! TTAAGAAAATCTAACAGGTA+TGG + chr8_4:49329588-49329607 Msa1330180:three_prime_UTR 25.0%
! TAAGAAAATCTAACAGGTAT+GGG + chr8_4:49329589-49329608 Msa1330180:three_prime_UTR 25.0%
!! TTTACAGTTTTTAAATTGGC+TGG + chr8_4:49329658-49329677 Msa1330180:three_prime_UTR 25.0%
! CTTTAGATATTAAGTAAGAC+TGG - chr8_4:49329783-49329802 None:intergenic 25.0%
! CAGTCTTACTTAATATCTAA+AGG + chr8_4:49329781-49329800 Msa1330180:three_prime_UTR 25.0%
ATGATCTACTTATTTGTACG+TGG + chr8_4:49326260-49326279 Msa1330180:five_prime_UTR 30.0%
TGATCTACTTATTTGTACGT+GGG + chr8_4:49326261-49326280 Msa1330180:five_prime_UTR 30.0%
!! TTCTGATTCGAATGATTTTC+AGG - chr8_4:49326314-49326333 None:intergenic 30.0%
CCACTAACTTGATTGAATTA+GGG - chr8_4:49326344-49326363 None:intergenic 30.0%
TCCACTAACTTGATTGAATT+AGG - chr8_4:49326345-49326364 None:intergenic 30.0%
! ACTACTAAGCACTATTCTTT+TGG - chr8_4:49326676-49326695 None:intergenic 30.0%
AATGCTATAAAGCTCAATCT+CGG + chr8_4:49327082-49327101 Msa1330180:CDS 30.0%
! TAGCTGCTATTTAACAAGAT+TGG - chr8_4:49327246-49327265 None:intergenic 30.0%
TTGAGAATAGCACAAAATAG+TGG - chr8_4:49327398-49327417 None:intergenic 30.0%
CTATTCTCAATTGACAACAT+TGG + chr8_4:49327408-49327427 Msa1330180:intron 30.0%
ATCACAAACTAAAAATGTGG+TGG - chr8_4:49327446-49327465 None:intergenic 30.0%
! TCATCTTTTCTAACATCAAG+CGG - chr8_4:49327659-49327678 None:intergenic 30.0%
CTTGATGTTAGAAAAGATGA+AGG + chr8_4:49327659-49327678 Msa1330180:CDS 30.0%
TAGTTCCAAAAGTTGTATAC+TGG - chr8_4:49327729-49327748 None:intergenic 30.0%
!!! ACTTTTTTATCAGCACTTGA+AGG + chr8_4:49327844-49327863 Msa1330180:intron 30.0%
TCAAACAACTATCTTTGACA+AGG - chr8_4:49327906-49327925 None:intergenic 30.0%
AAAGATAGTTGTTTGACTGT+AGG + chr8_4:49327910-49327929 Msa1330180:intron 30.0%
!!! TGTACCTCAATTTTTTCAGA+AGG + chr8_4:49327947-49327966 Msa1330180:intron 30.0%
! AGAACCTTCTGAAAAAATTG+AGG - chr8_4:49327954-49327973 None:intergenic 30.0%
AAGTACATCAAATCCAATGT+TGG - chr8_4:49328138-49328157 None:intergenic 30.0%
AATACATTTCCCATCTCTTT+AGG + chr8_4:49328512-49328531 Msa1330180:intron 30.0%
ATTTAGCCTGTATTTGCAAT+TGG - chr8_4:49328673-49328692 None:intergenic 30.0%
AGAATTGTACTCGAACAATA+AGG - chr8_4:49328718-49328737 None:intergenic 30.0%
TTCTAGTAGATTGATTACTG+GGG + chr8_4:49328734-49328753 Msa1330180:CDS 30.0%
! AGTCCCAAACTTTTATAGTA+CGG - chr8_4:49329022-49329041 None:intergenic 30.0%
CAATATTTCCATTTCGAGAA+AGG - chr8_4:49329229-49329248 None:intergenic 30.0%
TGAAATAATCAGTACTCTGA+AGG + chr8_4:49329439-49329458 Msa1330180:CDS 30.0%
TTGTTTCAATCTGGTCATAA+TGG + chr8_4:49329537-49329556 Msa1330180:CDS 30.0%
AATTTATCTAACCATGCCAT+TGG + chr8_4:49329866-49329885 Msa1330180:three_prime_UTR 30.0%
!! TGATTCGAATGATTTTCAGG+TGG - chr8_4:49326311-49326330 None:intergenic 35.0%
CCCTAATTCAATCAAGTTAG+TGG + chr8_4:49326341-49326360 Msa1330180:five_prime_UTR 35.0%
ACCAAACACAACAACAACAA+TGG + chr8_4:49326376-49326395 Msa1330180:exon 35.0%
! ACCATTGTTGTTGTTGTGTT+TGG - chr8_4:49326380-49326399 None:intergenic 35.0%
ACAACAACAATGGTGAAAAC+TGG + chr8_4:49326386-49326405 Msa1330180:exon 35.0%
! TCAATCGCAACTTGTTCTTT+CGG - chr8_4:49326416-49326435 None:intergenic 35.0%
ACTTCTGATTGAATGTGTGT+TGG + chr8_4:49326725-49326744 Msa1330180:intron 35.0%
TTCAGAATGTTGCTCGATAT+TGG + chr8_4:49326916-49326935 Msa1330180:intron 35.0%
AGTGTATCTTGGAACTATAG+CGG - chr8_4:49327303-49327322 None:intergenic 35.0%
TGTTGTCAAATAGCGGTTAT+AGG + chr8_4:49327336-49327355 Msa1330180:intron 35.0%
GCTATAGAACTATTGTGTAG+CGG + chr8_4:49327360-49327379 Msa1330180:intron 35.0%
TGAGTGCTCTCAATTAAAGA+CGG + chr8_4:49327509-49327528 Msa1330180:CDS 35.0%
! CTCTCAATTAAAGACGGATT+TGG + chr8_4:49327515-49327534 Msa1330180:CDS 35.0%
TTCAGAACTGAAAACACAAC+TGG + chr8_4:49327578-49327597 Msa1330180:CDS 35.0%
! ATTTTCAGCTTCAGCTTCAT+TGG - chr8_4:49327622-49327641 None:intergenic 35.0%
! CTATACATTTTCCGTGTGAA+TGG + chr8_4:49327761-49327780 Msa1330180:intron 35.0%
!! ATTTTCCGTGTGAATGGATT+TGG + chr8_4:49327767-49327786 Msa1330180:intron 35.0%
AAACTAAGCTTCAAGCTTGT+AGG - chr8_4:49328071-49328090 None:intergenic 35.0%
AAATGCGCTATATGAAGACA+TGG + chr8_4:49328536-49328555 Msa1330180:CDS 35.0%
TATATGAAGACATGGTTCAG+CGG + chr8_4:49328544-49328563 Msa1330180:CDS 35.0%
TCTAGTAGATTGATTACTGG+GGG + chr8_4:49328735-49328754 Msa1330180:CDS 35.0%
AAAGTGTGGGATACAAATAC+AGG + chr8_4:49328774-49328793 Msa1330180:CDS 35.0%
TCCTTAAGTTCAAGTCTTAC+TGG + chr8_4:49328798-49328817 Msa1330180:CDS 35.0%
CTCAAACAACTTGTATGTGT+GGG + chr8_4:49328887-49328906 Msa1330180:CDS 35.0%
ACGACCGTACTATAAAAGTT+TGG + chr8_4:49329015-49329034 Msa1330180:CDS 35.0%
CGACCGTACTATAAAAGTTT+GGG + chr8_4:49329016-49329035 Msa1330180:CDS 35.0%
! AAAGTTTGGGACTTGATGAA+AGG + chr8_4:49329029-49329048 Msa1330180:CDS 35.0%
ATCGACATGTCCAGAAAATA+TGG - chr8_4:49329123-49329142 None:intergenic 35.0%
! ATATTTTCTGGACATGTCGA+TGG + chr8_4:49329122-49329141 Msa1330180:CDS 35.0%
TCAATATCCCTTTCTCGAAA+TGG + chr8_4:49329218-49329237 Msa1330180:CDS 35.0%
TTAACAGAGTGGCTTCTAAT+TGG + chr8_4:49329330-49329349 Msa1330180:CDS 35.0%
GGAATGGAATTGTTTCAATC+TGG + chr8_4:49329528-49329547 Msa1330180:CDS 35.0%
TTTCTATCTGGTCATAGTGA+CGG + chr8_4:49329616-49329635 Msa1330180:three_prime_UTR 35.0%
! AAGTTGTTCCTTGTTTAGAC+AGG + chr8_4:49329695-49329714 Msa1330180:three_prime_UTR 35.0%
TTCTTACGGACCCACAATAA+AGG - chr8_4:49326634-49326653 None:intergenic 40.0%
GTTATTAACTCTTGTAGCGC+CGG + chr8_4:49326701-49326720 Msa1330180:intron 40.0%
! ACACATTCAATCAGAAGTGC+CGG - chr8_4:49326723-49326742 None:intergenic 40.0%
!! GCTCGATATTGGTGTTAAGT+TGG + chr8_4:49326927-49326946 Msa1330180:intron 40.0%
!! TTGGTGTTAAGTTGGTTGCT+TGG + chr8_4:49326935-49326954 Msa1330180:intron 40.0%
TTGGTTGCTTGGATAGTTGA+TGG + chr8_4:49326946-49326965 Msa1330180:intron 40.0%
!!! TGTTGTTGAAGGGTTTTGAG+TGG + chr8_4:49327022-49327041 Msa1330180:intron 40.0%
GAAAGAGAAAGCAGAGAACT+TGG + chr8_4:49327044-49327063 Msa1330180:CDS 40.0%
TACTTCCACAACAAGTTGCT+CGG - chr8_4:49327112-49327131 None:intergenic 40.0%
TGCGATTTCTGATATGCAGA+AGG + chr8_4:49327176-49327195 Msa1330180:CDS 40.0%
AGAAGGAGTTGACAGAATTG+AGG + chr8_4:49327193-49327212 Msa1330180:CDS 40.0%
CAAATTCTGCTACGGTATAG+CGG - chr8_4:49327274-49327293 None:intergenic 40.0%
GGTTTGTCCAAATTCTGCTA+CGG - chr8_4:49327282-49327301 None:intergenic 40.0%
AACTAAAAATGTGGTGGTCG+CGG - chr8_4:49327440-49327459 None:intergenic 40.0%
! CTCGTCCAGTATACAACTTT+TGG + chr8_4:49327721-49327740 Msa1330180:intron 40.0%
CAAAGCCAAATCCATTCACA+CGG - chr8_4:49327775-49327794 None:intergenic 40.0%
CAGCAATTTCACACCAACAT+TGG + chr8_4:49328122-49328141 Msa1330180:intron 40.0%
TTGTTCAACACAGTCTCGTT+AGG - chr8_4:49328288-49328307 None:intergenic 40.0%
!! GTTCACATCATAGTCTTGTG+AGG - chr8_4:49328430-49328449 None:intergenic 40.0%
! TGGTCTAGAACAACTTGCAA+GGG + chr8_4:49328578-49328597 Msa1330180:CDS 40.0%
ATTGTTCGTCGAAGTGAAGA+AGG + chr8_4:49328615-49328634 Msa1330180:CDS 40.0%
TCCCTTCCAATTGCAAATAC+AGG + chr8_4:49328664-49328683 Msa1330180:CDS 40.0%
GCCTGTATTTGCAATTGGAA+GGG - chr8_4:49328668-49328687 None:intergenic 40.0%
AGCCTGTATTTGCAATTGGA+AGG - chr8_4:49328669-49328688 None:intergenic 40.0%
TACAGGCTAAATGCACATGA+AGG + chr8_4:49328681-49328700 Msa1330180:CDS 40.0%
AGGATCGTTCAGTTAAAGTG+TGG + chr8_4:49328760-49328779 Msa1330180:CDS 40.0%
GGATCGTTCAGTTAAAGTGT+GGG + chr8_4:49328761-49328780 Msa1330180:CDS 40.0%
GCCAGTAAGACTTGAACTTA+AGG - chr8_4:49328802-49328821 None:intergenic 40.0%
GCTCAAACAACTTGTATGTG+TGG + chr8_4:49328886-49328905 Msa1330180:CDS 40.0%
TTTATCCGTGTGTCCAGTAA+GGG - chr8_4:49328940-49328959 None:intergenic 40.0%
ACACACGGATAAAGTTTGTG+CGG + chr8_4:49328947-49328966 Msa1330180:CDS 40.0%
! GATGGACAGACCATATTTTC+TGG + chr8_4:49329110-49329129 Msa1330180:CDS 40.0%
GACATGTCGATGGTAATCTT+CGG + chr8_4:49329132-49329151 Msa1330180:CDS 40.0%
TCGATGGTAATCTTCGGTTA+TGG + chr8_4:49329138-49329157 Msa1330180:CDS 40.0%
CGATGGTAATCTTCGGTTAT+GGG + chr8_4:49329139-49329158 Msa1330180:CDS 40.0%
AGAAAGGGATATTGACGTGA+CGG - chr8_4:49329213-49329232 None:intergenic 40.0%
! GGAAATATTGCATTGACCAG+TGG + chr8_4:49329239-49329258 Msa1330180:CDS 40.0%
! ATATTGCATTGACCAGTGGA+AGG + chr8_4:49329243-49329262 Msa1330180:CDS 40.0%
! TATTGCATTGACCAGTGGAA+GGG + chr8_4:49329244-49329263 Msa1330180:CDS 40.0%
TTTGTTTGATGTGCGATCTC+TGG + chr8_4:49329280-49329299 Msa1330180:CDS 40.0%
! CTGATGGATCTGTGCATATA+TGG + chr8_4:49329402-49329421 Msa1330180:CDS 40.0%
!! GGTATGGGATTGTTTCTATC+TGG + chr8_4:49329604-49329623 Msa1330180:three_prime_UTR 40.0%
AATGGTGTCCTGTCTAAACA+AGG - chr8_4:49329706-49329725 None:intergenic 40.0%
GGTAATTAACCTAGGAACAG+CGG + chr8_4:49329894-49329913 Msa1330180:three_prime_UTR 40.0%
TTGTACGTGGGACCTATTTC+CGG + chr8_4:49326273-49326292 Msa1330180:five_prime_UTR 45.0%
AGACTAGAGAGACCGGAAAT+AGG - chr8_4:49326288-49326307 None:intergenic 45.0%
AAACGCCATCTTCTCGAAGA+AGG + chr8_4:49326467-49326486 Msa1330180:CDS 45.0%
! CTAGAAAGTGCGAGAAAAGC+AGG - chr8_4:49326503-49326522 None:intergenic 45.0%
TTCTAGACCCATCGTTTCTC+AGG + chr8_4:49326517-49326536 Msa1330180:CDS 45.0%
GTACGTACCTGAGAAACGAT+GGG - chr8_4:49326527-49326546 None:intergenic 45.0%
! TGTTGGTGTCTGACATGTGT+CGG + chr8_4:49326742-49326761 Msa1330180:intron 45.0%
GAAAGCAGAGAACTTGGAAG+TGG + chr8_4:49327050-49327069 Msa1330180:CDS 45.0%
!! GTTATCCGAGCAACTTGTTG+TGG + chr8_4:49327104-49327123 Msa1330180:CDS 45.0%
CGCTATACCGTAGCAGAATT+TGG + chr8_4:49327272-49327291 Msa1330180:intron 45.0%
! CGTGTGAATGGATTTGGCTT+TGG + chr8_4:49327773-49327792 Msa1330180:intron 45.0%
GGCAAGTTGTGCAATCTTGA+CGG + chr8_4:49327794-49327813 Msa1330180:intron 45.0%
AGGTAAATGACACTTGCCAG+TGG - chr8_4:49328099-49328118 None:intergenic 45.0%
TTGGTGTGAAATTGCTGAGC+AGG - chr8_4:49328119-49328138 None:intergenic 45.0%
GCGCATTTGCCTAAAGAGAT+GGG - chr8_4:49328524-49328543 None:intergenic 45.0%
AGCGCATTTGCCTAAAGAGA+TGG - chr8_4:49328525-49328544 None:intergenic 45.0%
! GTGGTCTAGAACAACTTGCA+AGG + chr8_4:49328577-49328596 Msa1330180:CDS 45.0%
ACAACTTGCAAGGGAACAAG+TGG + chr8_4:49328587-49328606 Msa1330180:CDS 45.0%
AGGCTAAATGCACATGAAGG+AGG + chr8_4:49328684-49328703 Msa1330180:CDS 45.0%
TAGATTGATTACTGGGGGAC+AGG + chr8_4:49328740-49328759 Msa1330180:CDS 45.0%
TGAGATCCAATACTGAGCCA+AGG - chr8_4:49328827-49328846 None:intergenic 45.0%
TATGTGTGGGATCTTAGCTC+AGG + chr8_4:49328900-49328919 Msa1330180:CDS 45.0%
! TGTGTCCAGTAAGGGTATGA+CGG - chr8_4:49328932-49328951 None:intergenic 45.0%
TCATACCCTTACTGGACACA+CGG + chr8_4:49328932-49328951 Msa1330180:CDS 45.0%
CTTTATCCGTGTGTCCAGTA+AGG - chr8_4:49328941-49328960 None:intergenic 45.0%
! TTGTGCGGTTGATGTTAGCA+AGG + chr8_4:49328962-49328981 Msa1330180:CDS 45.0%
!! CAAAGAGCATTGCAGTTGCT+GGG - chr8_4:49329080-49329099 None:intergenic 45.0%
TATGGGACATTCAGAGTGGA+AGG + chr8_4:49329156-49329175 Msa1330180:CDS 45.0%
GTGCAAATTATCCCTTCCAC+TGG - chr8_4:49329258-49329277 None:intergenic 45.0%
AGAAGCCACTCTGTTAACTG+TGG - chr8_4:49329327-49329346 None:intergenic 45.0%
ACAACAATCATGTTGCCGCT+GGG + chr8_4:49329375-49329394 Msa1330180:CDS 45.0%
CTTCTGTTCTCTGTTGTAGC+TGG + chr8_4:49329471-49329490 Msa1330180:CDS 45.0%
TGTTGTAGCTGGAGTGGAAT+GGG + chr8_4:49329482-49329501 Msa1330180:CDS 45.0%
ATTCCTGTCAGCTGAAGCTA+GGG - chr8_4:49329513-49329532 None:intergenic 45.0%
ATCTGGTCATAATGGCTGTG+TGG + chr8_4:49329545-49329564 Msa1330180:exon 45.0%
TATCTAACCATGCCATTGGC+AGG + chr8_4:49329870-49329889 Msa1330180:three_prime_UTR 45.0%
GGTTAATTACCACCTGCCAA+TGG - chr8_4:49329885-49329904 None:intergenic 45.0%
TGGCAGGTGGTAATTAACCT+AGG + chr8_4:49329886-49329905 Msa1330180:three_prime_UTR 45.0%
GGTACGTACCTGAGAAACGA+TGG - chr8_4:49326528-49326547 None:intergenic 50.0%
GGATGCTGAACGCCTAAATG+AGG + chr8_4:49327680-49327699 Msa1330180:CDS 50.0%
!! AAGCTTAGTTTGCCTGCCAC+TGG + chr8_4:49328080-49328099 Msa1330180:intron 50.0%
AAATGACACTTGCCAGTGGC+AGG - chr8_4:49328095-49328114 None:intergenic 50.0%
AAGACATGGTTCAGCGGCTA+AGG + chr8_4:49328550-49328569 Msa1330180:CDS 50.0%
AGACATGGTTCAGCGGCTAA+GGG + chr8_4:49328551-49328570 Msa1330180:CDS 50.0%
CTTGCAAGGGAACAAGTGGA+TGG + chr8_4:49328591-49328610 Msa1330180:CDS 50.0%
! TCAAGTCTTACTGGCTGCCT+TGG + chr8_4:49328807-49328826 Msa1330180:CDS 50.0%
!! GCAAAGAGCATTGCAGTTGC+TGG - chr8_4:49329081-49329100 None:intergenic 50.0%
GCTCTTTGCTTCAGCACAGA+TGG + chr8_4:49329092-49329111 Msa1330180:CDS 50.0%
CGGTTATGGGACATTCAGAG+TGG + chr8_4:49329152-49329171 Msa1330180:CDS 50.0%
! GTGCGATCTCTGGAAGTTTG+TGG + chr8_4:49329290-49329309 Msa1330180:CDS 50.0%
ACGAGCCACAGTTAACAGAG+TGG + chr8_4:49329319-49329338 Msa1330180:CDS 50.0%
GCGGCAACATGATTGTTGTC+TGG - chr8_4:49329374-49329393 None:intergenic 50.0%
GACAACAATCATGTTGCCGC+TGG + chr8_4:49329374-49329393 Msa1330180:CDS 50.0%
AGATCCATCAGTAGACCCAG+CGG - chr8_4:49329393-49329412 None:intergenic 50.0%
GTTCTCTGTTGTAGCTGGAG+TGG + chr8_4:49329476-49329495 Msa1330180:CDS 50.0%
CTGTTGTAGCTGGAGTGGAA+TGG + chr8_4:49329481-49329500 Msa1330180:CDS 50.0%
TTCCTGTCAGCTGAAGCTAG+GGG - chr8_4:49329512-49329531 None:intergenic 50.0%
CATTCCTGTCAGCTGAAGCT+AGG - chr8_4:49329514-49329533 None:intergenic 50.0%
CTAGCTTCAGCTGACAGGAA+TGG + chr8_4:49329512-49329531 Msa1330180:CDS 50.0%
ATCTGGTCATAGTGACGGTG+TGG + chr8_4:49329621-49329640 Msa1330180:three_prime_UTR 50.0%
ATTACCACCTGCCAATGGCA+TGG - chr8_4:49329880-49329899 None:intergenic 50.0%
CAGGTGGAGACTAGAGAGAC+CGG - chr8_4:49326295-49326314 None:intergenic 55.0%
GAGCGCCTTCTTCGAGAAGA+TGG - chr8_4:49326475-49326494 None:intergenic 55.0%
TGGCTGCCTTGGCTCAGTAT+TGG + chr8_4:49328818-49328837 Msa1330180:CDS 55.0%
CGAGTCCGTCATACCCTTAC+TGG + chr8_4:49328924-49328943 Msa1330180:CDS 55.0%
GAGTGGAAGGCTGCTAAGTG+AGG + chr8_4:49329169-49329188 Msa1330180:CDS 55.0%
AACCCCTAGCTTCAGCTGAC+AGG + chr8_4:49329507-49329526 Msa1330180:CDS 55.0%
CTAACCATGCCATTGGCAGG+TGG + chr8_4:49329873-49329892 Msa1330180:three_prime_UTR 55.0%
GTTCAGCGGCTAAGGGCTAG+TGG + chr8_4:49328558-49328577 Msa1330180:CDS 60.0%
GTTGCCGCTGGGTCTACTGA+TGG + chr8_4:49329386-49329405 Msa1330180:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 49326253 49329917 49326253 ID=Msa1330180;Name=Msa1330180
chr8_4 mRNA 49326253 49329917 49326253 ID=Msa1330180-mRNA-1;Parent=Msa1330180;Name=Msa1330180-mRNA-1;_AED=0.02;_eAED=0.02;_QI=142|0.66|0.75|1|1|1|4|361|522
chr8_4 exon 49326253 49326538 49326253 ID=Msa1330180-mRNA-1:exon:14227;Parent=Msa1330180-mRNA-1
chr8_4 exon 49327033 49327238 49327033 ID=Msa1330180-mRNA-1:exon:14228;Parent=Msa1330180-mRNA-1
chr8_4 exon 49327506 49327701 49327506 ID=Msa1330180-mRNA-1:exon:14229;Parent=Msa1330180-mRNA-1
chr8_4 exon 49328534 49329917 49328534 ID=Msa1330180-mRNA-1:exon:14230;Parent=Msa1330180-mRNA-1
chr8_4 five_prime_UTR 49326253 49326394 49326253 ID=Msa1330180-mRNA-1:five_prime_utr;Parent=Msa1330180-mRNA-1
chr8_4 CDS 49326395 49326538 49326395 ID=Msa1330180-mRNA-1:cds;Parent=Msa1330180-mRNA-1
chr8_4 CDS 49327033 49327238 49327033 ID=Msa1330180-mRNA-1:cds;Parent=Msa1330180-mRNA-1
chr8_4 CDS 49327506 49327701 49327506 ID=Msa1330180-mRNA-1:cds;Parent=Msa1330180-mRNA-1
chr8_4 CDS 49328534 49329556 49328534 ID=Msa1330180-mRNA-1:cds;Parent=Msa1330180-mRNA-1
chr8_4 three_prime_UTR 49329557 49329917 49329557 ID=Msa1330180-mRNA-1:three_prime_utr;Parent=Msa1330180-mRNA-1
Gene Sequence

>Msa1330180

ATGGTGAAAACTGGAAGACCGAAAGAACAAGTTGCGATTGATGCAATCAATTATGCTATGAAAGCTCTCAAGAAACGCCATCTTCTCGAAGAAGGCGCTCATGCTCCTGCTTTTCTCGCACTTTCTAGACCCATCGTTTCTCAGGGTTTTGAGTGGAAAGAGAAAGCAGAGAACTTGGAAGTGGAACTTCAGCAATGCTATAAAGCTCAATCTCGGTTATCCGAGCAACTTGTTGTGGAAGTAGCTGAGTCTAGAATTTCAAAAGCTTCGCTTCAAGAAAAAGAAAATGCGATTTCTGATATGCAGAAGGAGTTGACAGAATTGAGGTTGTTTGATGTTTCTTCTGTGTTGGATGAGTGCTCTCAATTAAAGACGGATTTGGAACAAAAGATTAAAGAAGTAGAATTAGTTATGAGCGAGAATTCAGAACTGAAAACACAACTGGAGCAGATGACTACTAAAGCCAATGAAGCTGAAGCTGAAAATAAGATGTTGATTGACCGCTTGATGTTAGAAAAGATGAAGGATGCTGAACGCCTAAATGAGGCAAATGCGCTATATGAAGACATGGTTCAGCGGCTAAGGGCTAGTGGTCTAGAACAACTTGCAAGGGAACAAGTGGATGGAATTGTTCGTCGAAGTGAAGAAGGTGCTGAATTCTTTTCAGAGTCAAACATCCCTTCCAATTGCAAATACAGGCTAAATGCACATGAAGGAGGTTGTGCTTCCTTATTGTTCGAGTACAATTCTAGTAGATTGATTACTGGGGGACAGGATCGTTCAGTTAAAGTGTGGGATACAAATACAGGATCCTTAAGTTCAAGTCTTACTGGCTGCCTTGGCTCAGTATTGGATCTCACTATCACCAATGATAATCGATCTGTTATTGCTGCGAGCAGCTCAAACAACTTGTATGTGTGGGATCTTAGCTCAGGTCGAGTCCGTCATACCCTTACTGGACACACGGATAAAGTTTGTGCGGTTGATGTTAGCAAGGTTTCGAGTCGTCTTGTTGTCAGTGCAGCTTACGACCGTACTATAAAAGTTTGGGACTTGATGAAAGGTTACTGCACAAACACAATCATGTTTCCCAGCAACTGCAATGCTCTTTGCTTCAGCACAGATGGACAGACCATATTTTCTGGACATGTCGATGGTAATCTTCGGTTATGGGACATTCAGAGTGGAAGGCTGCTAAGTGAGGTTGCTGCACATTCACACGCCGTCACGTCAATATCCCTTTCTCGAAATGGAAATATTGCATTGACCAGTGGAAGGGATAATTTGCACAATTTGTTTGATGTGCGATCTCTGGAAGTTTGTGGTACATTACGAGCCACAGTTAACAGAGTGGCTTCTAATTGGAGTCGCTCATGTATCAGTCCAGACAACAATCATGTTGCCGCTGGGTCTACTGATGGATCTGTGCATATATGGTCAATATCTAAAGGTGAAATAATCAGTACTCTGAAGGAGCATACTTCTTCTGTTCTCTGTTGTAGCTGGAGTGGAATGGGAAAACCCCTAGCTTCAGCTGACAGGAATGGAATTGTTTCAATCTGGTCATAA

Protein sequence

>Msa1330180

MVKTGRPKEQVAIDAINYAMKALKKRHLLEEGAHAPAFLALSRPIVSQGFEWKEKAENLEVELQQCYKAQSRLSEQLVVEVAESRISKASLQEKENAISDMQKELTELRLFDVSSVLDECSQLKTDLEQKIKEVELVMSENSELKTQLEQMTTKANEAEAENKMLIDRLMLEKMKDAERLNEANALYEDMVQRLRASGLEQLAREQVDGIVRRSEEGAEFFSESNIPSNCKYRLNAHEGGCASLLFEYNSSRLITGGQDRSVKVWDTNTGSLSSSLTGCLGSVLDLTITNDNRSVIAASSSNNLYVWDLSSGRVRHTLTGHTDKVCAVDVSKVSSRLVVSAAYDRTIKVWDLMKGYCTNTIMFPSNCNALCFSTDGQTIFSGHVDGNLRLWDIQSGRLLSEVAAHSHAVTSISLSRNGNIALTSGRDNLHNLFDVRSLEVCGTLRATVNRVASNWSRSCISPDNNHVAAGSTDGSVHIWSISKGEIISTLKEHTSSVLCCSWSGMGKPLASADRNGIVSIWS*