AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0051020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0051020 MtrunA17_Chr1g0154411 97.660 470 8 2 1 468 1 469 0.0 943
Msa0051020 MtrunA17_Chr8g0361841 41.528 301 160 5 174 459 161 460 7.15e-73 237
Msa0051020 MtrunA17_Chr1g0200501 40.000 305 160 6 174 459 395 695 4.46e-67 228
Msa0051020 MtrunA17_Chr4g0047251 40.129 309 170 6 174 468 166 473 1.05e-64 218
Msa0051020 MtrunA17_Chr8g0378731 37.075 294 180 3 173 462 158 450 1.06e-62 211
Msa0051020 MtrunA17_Chr2g0282261 39.189 296 169 5 174 459 206 500 1.11e-60 207
Msa0051020 MtrunA17_Chr2g0317511 40.656 305 153 9 174 459 227 522 6.08e-59 203
Msa0051020 MtrunA17_Chr2g0285981 32.993 294 182 9 164 447 107 395 1.06e-37 143
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0051020 AT5G42660.1 64.831 472 148 4 1 466 1 460 0.0 625
Msa0051020 AT2G02910.2 42.904 303 160 5 174 465 155 455 1.62e-75 244
Msa0051020 AT2G02910.1 42.904 303 160 5 174 465 155 455 1.62e-75 244
Msa0051020 AT4G38500.1 33.557 447 252 10 23 462 38 446 5.98e-70 231
Msa0051020 AT1G34550.2 40.000 305 160 6 174 459 327 627 1.49e-68 231
Msa0051020 AT1G34550.1 40.000 305 160 6 174 459 421 721 4.04e-68 231
Msa0051020 AT4G09630.2 39.677 310 164 6 174 464 381 686 1.34e-66 226
Msa0051020 AT4G09630.1 39.677 310 164 6 174 464 396 701 1.82e-66 226
Msa0051020 AT1G53040.2 41.077 297 163 5 174 459 187 482 1.19e-64 218
Msa0051020 AT1G53040.1 41.077 297 163 5 174 459 187 482 1.19e-64 218
Msa0051020 AT1G53040.6 41.077 297 163 5 174 459 187 482 1.19e-64 218
Msa0051020 AT1G53040.3 41.017 295 162 5 174 457 187 480 1.90e-64 216
Msa0051020 AT1G53040.4 41.017 295 162 5 174 457 187 480 1.90e-64 216
Msa0051020 AT1G28240.1 39.262 298 166 7 174 459 214 508 1.88e-61 210
Msa0051020 AT1G53040.5 40.465 215 120 3 174 381 187 400 8.27e-45 162
Msa0051020 AT5G46220.1 30.345 290 188 7 153 432 97 382 4.76e-36 139

Find 115 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAAGCAAAATACTCTATT+TGG 0.077140 1_2:+5066530 Msa0051020:CDS
CAAAGCTGATTTAGTTAAAT+TGG 0.173985 1_2:+5067286 Msa0051020:exon
TCCAAAGCAAAATCTCTTTC+TGG 0.212926 1_2:-5067489 None:intergenic
CTAGTGGGTCCCTCCTAAAT+TGG 0.222026 1_2:-5066567 None:intergenic
AGAAGCTTCTTGTTAAATAC+TGG 0.261001 1_2:+5064664 Msa0051020:CDS
TTCAACCTTTGATCAGAAAA+AGG 0.262613 1_2:-5066198 None:intergenic
CCTGTAGACAAGAGATTTAA+TGG 0.266147 1_2:+5066754 Msa0051020:CDS
GCTAATGAACAAATGAAATA+AGG 0.306810 1_2:-5067345 None:intergenic
TATCTCTTTCCTCAAATGTT+TGG 0.307680 1_2:-5065642 None:intergenic
CACATATACCTGATTTGAAT+TGG 0.324506 1_2:-5067367 None:intergenic
TTCATTAGCCAATTCAAATC+AGG 0.343259 1_2:+5067359 Msa0051020:three_prime_UTR
TACCGAGTTTCTTTCGTTTA+CGG 0.350045 1_2:-5064626 None:intergenic
GCGACTGATGCGTCTTTAAT+AGG 0.361138 1_2:+5065556 Msa0051020:CDS
AGGTTTGCTATGTAGCATTC+TGG 0.362293 1_2:+5066079 Msa0051020:intron
GGTCGCAGAGTTGGGGATAA+TGG 0.363714 1_2:+5066135 Msa0051020:CDS
GTGGCGTGTTATTGTCGTTC+AGG 0.366914 1_2:+5066170 Msa0051020:CDS
GTTGTATCTACTTGTGCATT+TGG 0.368333 1_2:+5065918 Msa0051020:CDS
TAGACTCCAAGTCCCAATTT+AGG 0.368651 1_2:+5066554 Msa0051020:CDS
AATTAGTGGGTCGCAGAGTT+GGG 0.373736 1_2:+5066127 Msa0051020:CDS
CCATTAAATCTCTTGTCTAC+AGG 0.375251 1_2:-5066754 None:intergenic
ACGAGCTCCATGTTCTGATA+TGG 0.376444 1_2:-5066632 None:intergenic
GTTGGGGATAATGGATTTGT+TGG 0.377221 1_2:+5066144 Msa0051020:CDS
TTCAACCGCCACAGAACATA+TGG 0.378529 1_2:-5067175 None:intergenic
GAAGAATCTAGTTTACCTAT+TGG 0.384777 1_2:+5065514 Msa0051020:CDS
ACTAAAAGCGCAGGAATTAG+TGG 0.395475 1_2:+5066113 Msa0051020:CDS
TCTCCTCTCATAATCGGTAT+AGG 0.396549 1_2:+5067416 Msa0051020:three_prime_UTR
TCAAGCAAAATACTCTATTT+GGG 0.399723 1_2:+5066531 Msa0051020:CDS
CCTACTACTCATGTTGTTGC+TGG 0.399883 1_2:+5064858 Msa0051020:CDS
CTAATCTATTGATGTGCGTC+TGG 0.401746 1_2:+5067107 Msa0051020:CDS
TCTTCCTCTCCTCTCATAAT+CGG 0.404697 1_2:+5067410 Msa0051020:three_prime_UTR
ACAGTGCGAATGGTGGGTTT+AGG 0.412123 1_2:+5065853 Msa0051020:CDS
AGTTGCACTTCAACTTCCTC+TGG 0.414058 1_2:-5066706 None:intergenic
TCTGCGTTATCATTCCGATT+TGG 0.415047 1_2:+5064506 Msa0051020:five_prime_UTR
GAATTAGTGGGTCGCAGAGT+TGG 0.426550 1_2:+5066126 Msa0051020:CDS
AGTGGCGGCAGACAGTTATA+AGG 0.437613 1_2:+5064468 Msa0051020:five_prime_UTR
AAGAGATTTAATGGAAAGAA+AGG 0.439466 1_2:+5066763 Msa0051020:CDS
TGTCTGCACTCGCAAGGATC+TGG 0.451591 1_2:+5067225 Msa0051020:CDS
GTGTGTTGGAAGCGCTCCTT+TGG 0.451902 1_2:+5066590 Msa0051020:CDS
AGGTGGTTCGCTTCACGTCT+AGG 0.456871 1_2:+5067137 Msa0051020:CDS
TAGTGGGTCCCTCCTAAATT+GGG 0.459505 1_2:-5066566 None:intergenic
TACTGGAAACCAAACATTTG+AGG 0.460309 1_2:+5065633 Msa0051020:CDS
CTGAATCAATACAGAAAAGA+TGG 0.467593 1_2:+5066727 Msa0051020:CDS
GTCAGAGGCTTCACTTAAGA+AGG 0.470559 1_2:+5065974 Msa0051020:CDS
GGTTTGCTATGTAGCATTCT+GGG 0.477968 1_2:+5066080 Msa0051020:intron
AAACTACGACGGCACATTGT+GGG 0.478159 1_2:+5065826 Msa0051020:CDS
ATGAGGCTAAGGCCGTTGTC+AGG 0.480704 1_2:+5066668 Msa0051020:CDS
GTCCCTCCTAAATTGGGACT+TGG 0.482377 1_2:-5066560 None:intergenic
CACATCAATAGATTAGTTAG+TGG 0.489792 1_2:-5067100 None:intergenic
CCAGCAACAACATGAGTAGT+AGG 0.491549 1_2:-5064858 None:intergenic
ATAATGGATTTGTTGGAAAG+TGG 0.493171 1_2:+5066151 Msa0051020:CDS
GGTGGTTCGCTTCACGTCTA+GGG 0.510231 1_2:+5067138 Msa0051020:CDS
GTGAAGCCTCTGTTATCGTC+AGG 0.511246 1_2:+5067068 Msa0051020:CDS
TAGTTCATCGGTTTCGTCGT+CGG 0.511725 1_2:-5064580 None:intergenic
TTACTATGAGCTGTTTGAGT+AGG 0.512906 1_2:+5067459 Msa0051020:three_prime_UTR
GGAAGATTGATATACCAAAT+CGG 0.520062 1_2:-5064520 None:intergenic
TAACTAAATCAGCTTTGCAA+TGG 0.522702 1_2:-5067280 None:intergenic
ATATACAAGACTTTACCAAT+AGG 0.522988 1_2:-5065529 None:intergenic
TAAACTAGATTCTTCTTCCA+CGG 0.523311 1_2:-5065506 None:intergenic
GATGATCTCTATCAACCGAT+TGG 0.532985 1_2:+5065948 Msa0051020:CDS
GTATCTACTTGTGCATTTGG+TGG 0.539522 1_2:+5065921 Msa0051020:CDS
AGATCCTTGCGAGTGCAGAC+AGG 0.541955 1_2:-5067223 None:intergenic
TGTCGTTGTTGAAGCAATGT+TGG 0.543414 1_2:-5064769 None:intergenic
AAACTAGATTCTTCTTCCAC+GGG 0.546495 1_2:-5065505 None:intergenic
GACGACGAAACCGATGAACT+AGG 0.549148 1_2:+5064582 Msa0051020:CDS
CAAGGATCTGGTCAATAGCA+TGG 0.556262 1_2:+5067237 Msa0051020:CDS
GAGGGACCCACTAGGTGTGT+TGG 0.558276 1_2:+5066576 Msa0051020:CDS
TCTACTTGTGCATTTGGTGG+CGG 0.565708 1_2:+5065924 Msa0051020:CDS
TAAGTTAGAAAACTACAGCT+AGG 0.566181 1_2:-5067320 None:intergenic
GTACAGAACTTGTGCGCCAA+AGG 0.567215 1_2:-5066606 None:intergenic
TAGTGTCTATGATGAGGCTA+AGG 0.569258 1_2:+5066657 Msa0051020:CDS
GTTCCCTGTCTGCACTCGCA+AGG 0.571226 1_2:+5067219 Msa0051020:CDS
GAAGATAAAAGTTTCATGCA+AGG 0.574340 1_2:+5065885 Msa0051020:CDS
ACTGATGCGTCTTTAATAGG+AGG 0.575647 1_2:+5065559 Msa0051020:CDS
TTGCTTGAGGGAAAAGGCGA+TGG 0.577341 1_2:-5066516 None:intergenic
GAAGCCTCTGACATTCCAAT+CGG 0.578839 1_2:-5065963 None:intergenic
GTGCGTCTGGTTTAATGAGG+TGG 0.582996 1_2:+5067120 Msa0051020:CDS
TCAACCGCCACAGAACATAT+GGG 0.583405 1_2:-5067174 None:intergenic
TGAAATCACACTAAAAGCGC+AGG 0.586944 1_2:+5066104 Msa0051020:CDS
ATTAGTGGGTCGCAGAGTTG+GGG 0.587159 1_2:+5066128 Msa0051020:CDS
ACTCCAAGTCCCAATTTAGG+AGG 0.588616 1_2:+5066557 Msa0051020:CDS
CGCCGTAAACGAAAGAAACT+CGG 0.589754 1_2:+5064624 Msa0051020:CDS
AAGGATCTGGTCAATAGCAT+GGG 0.590506 1_2:+5067238 Msa0051020:CDS
GGTTCTACAGTGCGAATGGT+GGG 0.594182 1_2:+5065847 Msa0051020:CDS
TCGTCGTCGGAGATTGAGAT+CGG 0.596070 1_2:-5064567 None:intergenic
ACACGAATTGGTTTAAGACC+AGG 0.598308 1_2:+5064735 Msa0051020:CDS
GCGCATTCGACCTAGTTCAT+CGG 0.599118 1_2:-5064592 None:intergenic
GATCCTTGCGAGTGCAGACA+GGG 0.600367 1_2:-5067222 None:intergenic
GAAACTACGACGGCACATTG+TGG 0.606798 1_2:+5065825 Msa0051020:CDS
CAATTTAGGAGGGACCCACT+AGG 0.609024 1_2:+5066568 Msa0051020:CDS
CTCCAAGTCCCAATTTAGGA+GGG 0.612198 1_2:+5066558 Msa0051020:CDS
GGGTTCTACAGTGCGAATGG+TGG 0.617468 1_2:+5065846 Msa0051020:CDS
AGCGCTTCCAACACACCTAG+TGG 0.619009 1_2:-5066583 None:intergenic
GTTGAATGGTAAAATTCCCA+AGG 0.623439 1_2:+5066215 Msa0051020:CDS
ATTGTCTCAATTGCGTGCAG+AGG 0.623452 1_2:+5065591 Msa0051020:CDS
CTAAAAGCGCAGGAATTAGT+GGG 0.625147 1_2:+5066114 Msa0051020:CDS
TCGTAGTAGTGTCTATGATG+AGG 0.628284 1_2:+5066651 Msa0051020:CDS
GATGTGCGTCTGGTTTAATG+AGG 0.632480 1_2:+5067117 Msa0051020:CDS
CTGATGCGTCTTTAATAGGA+GGG 0.632733 1_2:+5065560 Msa0051020:CDS
TCAGCTTCCCATATGTTCTG+TGG 0.637981 1_2:+5067167 Msa0051020:CDS
TGTGGGTTCTACAGTGCGAA+TGG 0.652523 1_2:+5065843 Msa0051020:CDS
GCGCTTCCAACACACCTAGT+GGG 0.655267 1_2:-5066582 None:intergenic
GCTTCCCATATGTTCTGTGG+CGG 0.655449 1_2:+5067170 Msa0051020:CDS
GTACTTGCCATATCAGAACA+TGG 0.661039 1_2:+5066625 Msa0051020:CDS
ATGAGAGGAGAGGAAGAGAG+AGG 0.663436 1_2:-5067404 None:intergenic
TTTCATGCAAGGTTGCAAAG+TGG 0.666633 1_2:+5065896 Msa0051020:CDS
TAACCTATACCGATTATGAG+AGG 0.674432 1_2:-5067419 None:intergenic
TCAACCGATTGGAATGTCAG+AGG 0.688554 1_2:+5065959 Msa0051020:CDS
TATACCGATTATGAGAGGAG+AGG 0.691482 1_2:-5067414 None:intergenic
GTTATCGTAGAAATCTGTGT+CGG 0.699130 1_2:-5067520 None:intergenic
AGATCGGTAGAGTGTTGCTG+TGG 0.705202 1_2:-5064551 None:intergenic
AGTGTTGCTGTGGAACATTG+AGG 0.708184 1_2:-5064541 None:intergenic
TGAGCAACTAGAGATTCCCG+TGG 0.719886 1_2:+5065489 Msa0051020:CDS
ATGTTGGAAGAAGAACTACC+TGG 0.722649 1_2:-5064753 None:intergenic
ATGCTTCCTGACGATAACAG+AGG 0.723941 1_2:-5067074 None:intergenic
ATAGGTGAAAGAAACTACGA+CGG 0.775814 1_2:+5065815 Msa0051020:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTGATAAAACTTA+AGG + chr1_2:5065396-5065415 Msa0051020:intron 10.0%
!! TTATTATAAGTAATATAGTT+TGG + chr1_2:5065776-5065795 Msa0051020:intron 10.0%
!!! ACAAGTTTTAATTTATTTAC+TGG + chr1_2:5065616-5065635 Msa0051020:CDS 15.0%
!! ATGTGAATTAAAATTAATCT+GGG - chr1_2:5065707-5065726 None:intergenic 15.0%
!! AATGTGAATTAAAATTAATC+TGG - chr1_2:5065708-5065727 None:intergenic 15.0%
!! GATTCAACATTATAAAATAT+TGG - chr1_2:5067026-5067045 None:intergenic 15.0%
!! TAACAAAAAAAAAATCACAG+TGG + chr1_2:5064450-5064469 Msa0051020:five_prime_UTR 20.0%
!!! ATTCAAGTTAGTTTTAACAA+TGG - chr1_2:5064829-5064848 None:intergenic 20.0%
!!! AAAATAAAGAAAAAGGGTTT+TGG - chr1_2:5064909-5064928 None:intergenic 20.0%
!! AAAACTATTATGAAAACTCT+AGG + chr1_2:5065209-5065228 Msa0051020:intron 20.0%
!! AAACTATTATGAAAACTCTA+GGG + chr1_2:5065210-5065229 Msa0051020:intron 20.0%
!! ATCATAAAGTGAATTCAAAT+AGG + chr1_2:5065312-5065331 Msa0051020:intron 20.0%
!!! TATTTTGATAAAACTTAAGG+AGG + chr1_2:5065399-5065418 Msa0051020:intron 20.0%
!! TTTCAATTGATATTGTTGAT+AGG + chr1_2:5066895-5066914 Msa0051020:intron 20.0%
! TATATGTTTGATTCCACTAT+TGG - chr1_2:5065060-5065079 None:intergenic 25.0%
! TATTATGTAGTAAAGAGAGT+AGG + chr1_2:5065096-5065115 Msa0051020:intron 25.0%
! AGTAAGGAAAGTAAATTAGA+TGG + chr1_2:5065133-5065152 Msa0051020:intron 25.0%
!!! GTTTTCCATTTAGTTTTTGT+AGG - chr1_2:5065194-5065213 None:intergenic 25.0%
!! GTTTGTAGAAATACTTTTGT+TGG + chr1_2:5065286-5065305 Msa0051020:intron 25.0%
! ATATACAAGACTTTACCAAT+AGG - chr1_2:5065532-5065551 None:intergenic 25.0%
! TATTTGCCAAATCTATTTAG+TGG + chr1_2:5066051-5066070 Msa0051020:intron 25.0%
! TATCAGCAAATGGAAAAATT+AGG - chr1_2:5066366-5066385 None:intergenic 25.0%
! ATGATTCAAATATCAGCAAA+TGG - chr1_2:5066376-5066395 None:intergenic 25.0%
! AACAAAAAAAGCTTTCTAAG+AGG - chr1_2:5066443-5066462 None:intergenic 25.0%
!!! AAATAGAGTATTTTGCTTGA+GGG - chr1_2:5066531-5066550 None:intergenic 25.0%
! TCAAGCAAAATACTCTATTT+GGG + chr1_2:5066531-5066550 Msa0051020:CDS 25.0%
! AAGAGATTTAATGGAAAGAA+AGG + chr1_2:5066763-5066782 Msa0051020:CDS 25.0%
! AAAATATGACAGCAAAATCT+TGG - chr1_2:5066878-5066897 None:intergenic 25.0%
! TTGATAAAAAGTTGAATCAG+TGG - chr1_2:5066990-5067009 None:intergenic 25.0%
!! CAAAGCTGATTTAGTTAAAT+TGG + chr1_2:5067286-5067305 Msa0051020:exon 25.0%
! GCTAATGAACAAATGAAATA+AGG - chr1_2:5067348-5067367 None:intergenic 25.0%
CAAAAAAAAAATCACAGTGG+CGG + chr1_2:5064453-5064472 Msa0051020:five_prime_UTR 30.0%
GGAAGATTGATATACCAAAT+CGG - chr1_2:5064523-5064542 None:intergenic 30.0%
AGAAGCTTCTTGTTAAATAC+TGG + chr1_2:5064664-5064683 Msa0051020:CDS 30.0%
! TTTTACGAGATTACACGAAT+TGG + chr1_2:5064723-5064742 Msa0051020:CDS 30.0%
!!! AAGAAAAAGGGTTTTGGATT+GGG - chr1_2:5064903-5064922 None:intergenic 30.0%
!!! AAAGAAAAAGGGTTTTGGAT+TGG - chr1_2:5064904-5064923 None:intergenic 30.0%
!! AAAGTTAGTTGATTTGCTTG+CGG + chr1_2:5064967-5064986 Msa0051020:intron 30.0%
AAGGAAAGTAAATTAGATGG+AGG + chr1_2:5065136-5065155 Msa0051020:intron 30.0%
AGGAAAGTAAATTAGATGGA+GGG + chr1_2:5065137-5065156 Msa0051020:intron 30.0%
GAAGACCTACAAAAACTAAA+TGG + chr1_2:5065186-5065205 Msa0051020:intron 30.0%
TCTACAAACAACAACAATCA+AGG - chr1_2:5065275-5065294 None:intergenic 30.0%
GAAGTGAAATGAAAGAACTA+AGG - chr1_2:5065354-5065373 None:intergenic 30.0%
AGTTCTTTCATTTCACTTCT+AGG + chr1_2:5065355-5065374 Msa0051020:intron 30.0%
TTTGATAAAACTTAAGGAGG+CGG + chr1_2:5065402-5065421 Msa0051020:intron 30.0%
ACATGTGAGTTAATTCTATC+AGG + chr1_2:5065436-5065455 Msa0051020:intron 30.0%
TAAACTAGATTCTTCTTCCA+CGG - chr1_2:5065509-5065528 None:intergenic 30.0%
! GAAGAATCTAGTTTACCTAT+TGG + chr1_2:5065514-5065533 Msa0051020:CDS 30.0%
TATCTCTTTCCTCAAATGTT+TGG - chr1_2:5065645-5065664 None:intergenic 30.0%
GGTTTCTTTCTTCATTGTAT+AGG + chr1_2:5065797-5065816 Msa0051020:intron 30.0%
GAAGATAAAAGTTTCATGCA+AGG + chr1_2:5065885-5065904 Msa0051020:CDS 30.0%
TGCATACCACTAAATAGATT+TGG - chr1_2:5066060-5066079 None:intergenic 30.0%
AAATCTATTTAGTGGTATGC+AGG + chr1_2:5066059-5066078 Msa0051020:intron 30.0%
!! ATAATGGATTTGTTGGAAAG+TGG + chr1_2:5066151-5066170 Msa0051020:CDS 30.0%
! ATCTTCCTTTTTCTGATCAA+AGG + chr1_2:5066193-5066212 Msa0051020:CDS 30.0%
TTCAACCTTTGATCAGAAAA+AGG - chr1_2:5066201-5066220 None:intergenic 30.0%
! TTTTCTGATCAAAGGTTGAA+TGG + chr1_2:5066201-5066220 Msa0051020:CDS 30.0%
CATCAAAGATGTAATACCTT+GGG - chr1_2:5066234-5066253 None:intergenic 30.0%
ATGAAGTATAGAAAGAGAAG+CGG - chr1_2:5066258-5066277 None:intergenic 30.0%
!! CAAATAGAGTATTTTGCTTG+AGG - chr1_2:5066532-5066551 None:intergenic 30.0%
CTCAAGCAAAATACTCTATT+TGG + chr1_2:5066530-5066549 Msa0051020:CDS 30.0%
CTGAATCAATACAGAAAAGA+TGG + chr1_2:5066727-5066746 Msa0051020:CDS 30.0%
! CACATCAATAGATTAGTTAG+TGG - chr1_2:5067103-5067122 None:intergenic 30.0%
TAACTAAATCAGCTTTGCAA+TGG - chr1_2:5067283-5067302 None:intergenic 30.0%
TAAGTTAGAAAACTACAGCT+AGG - chr1_2:5067323-5067342 None:intergenic 30.0%
TTCATTAGCCAATTCAAATC+AGG + chr1_2:5067359-5067378 Msa0051020:three_prime_UTR 30.0%
! CACATATACCTGATTTGAAT+TGG - chr1_2:5067370-5067389 None:intergenic 30.0%
TACCGAGTTTCTTTCGTTTA+CGG - chr1_2:5064629-5064648 None:intergenic 35.0%
TAAAAGAGTAAAAACGCAGC+TGG - chr1_2:5064708-5064727 None:intergenic 35.0%
!!! AGAAAAAGGGTTTTGGATTG+GGG - chr1_2:5064902-5064921 None:intergenic 35.0%
! ACTAGAATTGATTCTTGACG+CGG - chr1_2:5065028-5065047 None:intergenic 35.0%
GAGGGTAGTTAAATCTCTAA+AGG + chr1_2:5065155-5065174 Msa0051020:intron 35.0%
! AGTTAAATCTCTAAAGGCTC+CGG + chr1_2:5065161-5065180 Msa0051020:intron 35.0%
! ACTCTAGGGATTAATGAGTT+TGG + chr1_2:5065224-5065243 Msa0051020:intron 35.0%
! TCTAGTTGCTCAAGTTTTTC+AGG - chr1_2:5065481-5065500 None:intergenic 35.0%
AAACTAGATTCTTCTTCCAC+GGG - chr1_2:5065508-5065527 None:intergenic 35.0%
TACTGGAAACCAAACATTTG+AGG + chr1_2:5065633-5065652 Msa0051020:CDS 35.0%
! GGAAAGAGATAGAAGTTTTG+AGG + chr1_2:5065654-5065673 Msa0051020:CDS 35.0%
!!! GATAGAAGTTTTGAGGTGAT+TGG + chr1_2:5065661-5065680 Msa0051020:intron 35.0%
ATAGGTGAAAGAAACTACGA+CGG + chr1_2:5065815-5065834 Msa0051020:intron 35.0%
GTTGTATCTACTTGTGCATT+TGG + chr1_2:5065918-5065937 Msa0051020:CDS 35.0%
GTTGAATGGTAAAATTCCCA+AGG + chr1_2:5066215-5066234 Msa0051020:CDS 35.0%
GCATCAAAGATGTAATACCT+TGG - chr1_2:5066235-5066254 None:intergenic 35.0%
TGAAGTATAGAAAGAGAAGC+GGG - chr1_2:5066257-5066276 None:intergenic 35.0%
!! CTTGTGAGAACATTTTGGTA+GGG - chr1_2:5066340-5066359 None:intergenic 35.0%
!! TCTTGTGAGAACATTTTGGT+AGG - chr1_2:5066341-5066360 None:intergenic 35.0%
! GGAATCTTGTGAGAACATTT+TGG - chr1_2:5066345-5066364 None:intergenic 35.0%
! AGTATTTTGCTTGAGGGAAA+AGG - chr1_2:5066525-5066544 None:intergenic 35.0%
CCATTAAATCTCTTGTCTAC+AGG - chr1_2:5066757-5066776 None:intergenic 35.0%
CCTGTAGACAAGAGATTTAA+TGG + chr1_2:5066754-5066773 Msa0051020:CDS 35.0%
AACAGACTAGATGAGAAGAT+TGG - chr1_2:5066952-5066971 None:intergenic 35.0%
!! TTTGCAATGGTTTTGCTTTG+CGG - chr1_2:5067270-5067289 None:intergenic 35.0%
! TAACCTATACCGATTATGAG+AGG - chr1_2:5067422-5067441 None:intergenic 35.0%
TTACTATGAGCTGTTTGAGT+AGG + chr1_2:5067459-5067478 Msa0051020:three_prime_UTR 35.0%
! TCCAGAAAGAGATTTTGCTT+TGG + chr1_2:5067488-5067507 Msa0051020:three_prime_UTR 35.0%
TCCAAAGCAAAATCTCTTTC+TGG - chr1_2:5067492-5067511 None:intergenic 35.0%
GTTATCGTAGAAATCTGTGT+CGG - chr1_2:5067523-5067542 None:intergenic 35.0%
TCTGCGTTATCATTCCGATT+TGG + chr1_2:5064506-5064525 Msa0051020:five_prime_UTR 40.0%
! ACACGAATTGGTTTAAGACC+AGG + chr1_2:5064735-5064754 Msa0051020:CDS 40.0%
ATGTTGGAAGAAGAACTACC+TGG - chr1_2:5064756-5064775 None:intergenic 40.0%
TGTCGTTGTTGAAGCAATGT+TGG - chr1_2:5064772-5064791 None:intergenic 40.0%
!!! GAAAAAGGGTTTTGGATTGG+GGG - chr1_2:5064901-5064920 None:intergenic 40.0%
! TTTGAGAGTGTGTGTGTGTT+TGG + chr1_2:5064997-5065016 Msa0051020:intron 40.0%
! GGCGTGTAGATTTTGTAGTA+AGG + chr1_2:5065117-5065136 Msa0051020:intron 40.0%
! AGTTTTTGTAGGTCTTCCTC+CGG - chr1_2:5065183-5065202 None:intergenic 40.0%
! TTCACTTCTAGGAATGAGTG+AGG + chr1_2:5065366-5065385 Msa0051020:intron 40.0%
!!! AGTTGCTCAAGTTTTTCAGG+TGG - chr1_2:5065478-5065497 None:intergenic 40.0%
ACTGATGCGTCTTTAATAGG+AGG + chr1_2:5065559-5065578 Msa0051020:CDS 40.0%
CTGATGCGTCTTTAATAGGA+GGG + chr1_2:5065560-5065579 Msa0051020:CDS 40.0%
TTTCATGCAAGGTTGCAAAG+TGG + chr1_2:5065896-5065915 Msa0051020:CDS 40.0%
GTATCTACTTGTGCATTTGG+TGG + chr1_2:5065921-5065940 Msa0051020:CDS 40.0%
GATGATCTCTATCAACCGAT+TGG + chr1_2:5065948-5065967 Msa0051020:CDS 40.0%
!! AGGTTTGCTATGTAGCATTC+TGG + chr1_2:5066079-5066098 Msa0051020:intron 40.0%
!! GGTTTGCTATGTAGCATTCT+GGG + chr1_2:5066080-5066099 Msa0051020:intron 40.0%
! TGAAATCACACTAAAAGCGC+AGG + chr1_2:5066104-5066123 Msa0051020:CDS 40.0%
! ACTAAAAGCGCAGGAATTAG+TGG + chr1_2:5066113-5066132 Msa0051020:CDS 40.0%
! CTAAAAGCGCAGGAATTAGT+GGG + chr1_2:5066114-5066133 Msa0051020:CDS 40.0%
!! GTTGGGGATAATGGATTTGT+TGG + chr1_2:5066144-5066163 Msa0051020:CDS 40.0%
TGTTGTCTTCATTAACCCCA+TGG + chr1_2:5066408-5066427 Msa0051020:intron 40.0%
GTTGTCTTCATTAACCCCAT+GGG + chr1_2:5066409-5066428 Msa0051020:intron 40.0%
TTGTCTTCATTAACCCCATG+GGG + chr1_2:5066410-5066429 Msa0051020:intron 40.0%
!!! TTTCCTTTTTCAACCACGTG+TGG + chr1_2:5066468-5066487 Msa0051020:intron 40.0%
!!! TTCCTTTTTCAACCACGTGT+GGG + chr1_2:5066469-5066488 Msa0051020:intron 40.0%
TAGACTCCAAGTCCCAATTT+AGG + chr1_2:5066554-5066573 Msa0051020:CDS 40.0%
GTACTTGCCATATCAGAACA+TGG + chr1_2:5066625-5066644 Msa0051020:CDS 40.0%
TCGTAGTAGTGTCTATGATG+AGG + chr1_2:5066651-5066670 Msa0051020:CDS 40.0%
TAGTGTCTATGATGAGGCTA+AGG + chr1_2:5066657-5066676 Msa0051020:CDS 40.0%
!!! CGCTTTGTTTTTCCTGACAA+CGG - chr1_2:5066683-5066702 None:intergenic 40.0%
CTAATCTATTGATGTGCGTC+TGG + chr1_2:5067107-5067126 Msa0051020:CDS 40.0%
AAGGATCTGGTCAATAGCAT+GGG + chr1_2:5067238-5067257 Msa0051020:CDS 40.0%
TCTTCCTCTCCTCTCATAAT+CGG + chr1_2:5067410-5067429 Msa0051020:three_prime_UTR 40.0%
! TATACCGATTATGAGAGGAG+AGG - chr1_2:5067417-5067436 None:intergenic 40.0%
TCTCCTCTCATAATCGGTAT+AGG + chr1_2:5067416-5067435 Msa0051020:three_prime_UTR 40.0%
! AGTGTTGCTGTGGAACATTG+AGG - chr1_2:5064544-5064563 None:intergenic 45.0%
!! TAGTTCATCGGTTTCGTCGT+CGG - chr1_2:5064583-5064602 None:intergenic 45.0%
CGCCGTAAACGAAAGAAACT+CGG + chr1_2:5064624-5064643 Msa0051020:CDS 45.0%
CCAGCAACAACATGAGTAGT+AGG - chr1_2:5064861-5064880 None:intergenic 45.0%
CCTACTACTCATGTTGTTGC+TGG + chr1_2:5064858-5064877 Msa0051020:CDS 45.0%
TAGTCGAGAGCAACCAATAG+TGG + chr1_2:5065044-5065063 Msa0051020:intron 45.0%
! TAAATCTCTAAAGGCTCCGG+AGG + chr1_2:5065164-5065183 Msa0051020:intron 45.0%
GCGACTGATGCGTCTTTAAT+AGG + chr1_2:5065556-5065575 Msa0051020:CDS 45.0%
ATTGTCTCAATTGCGTGCAG+AGG + chr1_2:5065591-5065610 Msa0051020:CDS 45.0%
! TTGCTACTTGTTTGCCCTAC+TGG + chr1_2:5065730-5065749 Msa0051020:intron 45.0%
ACAACCAAGCGTATCCAGTA+GGG - chr1_2:5065747-5065766 None:intergenic 45.0%
TACAACCAAGCGTATCCAGT+AGG - chr1_2:5065748-5065767 None:intergenic 45.0%
AAACTACGACGGCACATTGT+GGG + chr1_2:5065826-5065845 Msa0051020:CDS 45.0%
! TCTACTTGTGCATTTGGTGG+CGG + chr1_2:5065924-5065943 Msa0051020:CDS 45.0%
TCAACCGATTGGAATGTCAG+AGG + chr1_2:5065959-5065978 Msa0051020:CDS 45.0%
GAAGCCTCTGACATTCCAAT+CGG - chr1_2:5065966-5065985 None:intergenic 45.0%
GTCAGAGGCTTCACTTAAGA+AGG + chr1_2:5065974-5065993 Msa0051020:CDS 45.0%
! AATTAGTGGGTCGCAGAGTT+GGG + chr1_2:5066127-5066146 Msa0051020:CDS 45.0%
TGTCTTCATTAACCCCATGG+GGG + chr1_2:5066411-5066430 Msa0051020:intron 45.0%
!! TAAGAGGAAAGTACCCCCAT+GGG - chr1_2:5066427-5066446 None:intergenic 45.0%
ACTCCAAGTCCCAATTTAGG+AGG + chr1_2:5066557-5066576 Msa0051020:CDS 45.0%
CTCCAAGTCCCAATTTAGGA+GGG + chr1_2:5066558-5066577 Msa0051020:CDS 45.0%
! TAGTGGGTCCCTCCTAAATT+GGG - chr1_2:5066569-5066588 None:intergenic 45.0%
ACGAGCTCCATGTTCTGATA+TGG - chr1_2:5066635-5066654 None:intergenic 45.0%
GAAAAACAAAGCGAAGCCAG+AGG + chr1_2:5066690-5066709 Msa0051020:CDS 45.0%
AGTTGCACTTCAACTTCCTC+TGG - chr1_2:5066709-5066728 None:intergenic 45.0%
ATGCTTCCTGACGATAACAG+AGG - chr1_2:5067077-5067096 None:intergenic 45.0%
! GATGTGCGTCTGGTTTAATG+AGG + chr1_2:5067117-5067136 Msa0051020:CDS 45.0%
TCAGCTTCCCATATGTTCTG+TGG + chr1_2:5067167-5067186 Msa0051020:CDS 45.0%
TCAACCGCCACAGAACATAT+GGG - chr1_2:5067177-5067196 None:intergenic 45.0%
TTCAACCGCCACAGAACATA+TGG - chr1_2:5067178-5067197 None:intergenic 45.0%
CAAGGATCTGGTCAATAGCA+TGG + chr1_2:5067237-5067256 Msa0051020:CDS 45.0%
!! ATAAAAAAAATAAAGAAAAA+GGG - chr1_2:5064915-5064934 None:intergenic 5.0%
!! AATAAAAAAAATAAAGAAAA+AGG - chr1_2:5064916-5064935 None:intergenic 5.0%
!!! TATTTTGATTTAAAAAATAT+CGG - chr1_2:5067547-5067566 None:intergenic 5.0%
AGTGGCGGCAGACAGTTATA+AGG + chr1_2:5064468-5064487 Msa0051020:five_prime_UTR 50.0%
!! AGATCGGTAGAGTGTTGCTG+TGG - chr1_2:5064554-5064573 None:intergenic 50.0%
TCGTCGTCGGAGATTGAGAT+CGG - chr1_2:5064570-5064589 None:intergenic 50.0%
GACGACGAAACCGATGAACT+AGG + chr1_2:5064582-5064601 Msa0051020:CDS 50.0%
GCGCATTCGACCTAGTTCAT+CGG - chr1_2:5064595-5064614 None:intergenic 50.0%
TGAGCAACTAGAGATTCCCG+TGG + chr1_2:5065489-5065508 Msa0051020:CDS 50.0%
TTTGCCCTACTGGATACGCT+TGG + chr1_2:5065740-5065759 Msa0051020:intron 50.0%
GAAACTACGACGGCACATTG+TGG + chr1_2:5065825-5065844 Msa0051020:CDS 50.0%
TGTGGGTTCTACAGTGCGAA+TGG + chr1_2:5065843-5065862 Msa0051020:CDS 50.0%
GGTTCTACAGTGCGAATGGT+GGG + chr1_2:5065847-5065866 Msa0051020:CDS 50.0%
!! ACAGTGCGAATGGTGGGTTT+AGG + chr1_2:5065853-5065872 Msa0051020:CDS 50.0%
! GAATTAGTGGGTCGCAGAGT+TGG + chr1_2:5066126-5066145 Msa0051020:CDS 50.0%
! ATTAGTGGGTCGCAGAGTTG+GGG + chr1_2:5066128-5066147 Msa0051020:CDS 50.0%
! GTGGCGTGTTATTGTCGTTC+AGG + chr1_2:5066170-5066189 Msa0051020:CDS 50.0%
!! AAGAGGAAAGTACCCCCATG+GGG - chr1_2:5066426-5066445 None:intergenic 50.0%
!! CTAAGAGGAAAGTACCCCCA+TGG - chr1_2:5066428-5066447 None:intergenic 50.0%
AGCCCACACGTGGTTGAAAA+AGG - chr1_2:5066474-5066493 None:intergenic 50.0%
! TTTTCAACCACGTGTGGGCT+TGG + chr1_2:5066474-5066493 Msa0051020:intron 50.0%
AAGATATCCAAGCCCACACG+TGG - chr1_2:5066484-5066503 None:intergenic 50.0%
TTGCTTGAGGGAAAAGGCGA+TGG - chr1_2:5066519-5066538 None:intergenic 50.0%
GTCCCTCCTAAATTGGGACT+TGG - chr1_2:5066563-5066582 None:intergenic 50.0%
! CTAGTGGGTCCCTCCTAAAT+TGG - chr1_2:5066570-5066589 None:intergenic 50.0%
CAATTTAGGAGGGACCCACT+AGG + chr1_2:5066568-5066587 Msa0051020:CDS 50.0%
GTACAGAACTTGTGCGCCAA+AGG - chr1_2:5066609-5066628 None:intergenic 50.0%
GTGAAGCCTCTGTTATCGTC+AGG + chr1_2:5067068-5067087 Msa0051020:CDS 50.0%
! GTGCGTCTGGTTTAATGAGG+TGG + chr1_2:5067120-5067139 Msa0051020:CDS 50.0%
GCTTCCCATATGTTCTGTGG+CGG + chr1_2:5067170-5067189 Msa0051020:CDS 50.0%
ATGAGAGGAGAGGAAGAGAG+AGG - chr1_2:5067407-5067426 None:intergenic 50.0%
GGGTTCTACAGTGCGAATGG+TGG + chr1_2:5065846-5065865 Msa0051020:CDS 55.0%
GGTCGCAGAGTTGGGGATAA+TGG + chr1_2:5066135-5066154 Msa0051020:CDS 55.0%
GCGCTTCCAACACACCTAGT+GGG - chr1_2:5066585-5066604 None:intergenic 55.0%
AGCGCTTCCAACACACCTAG+TGG - chr1_2:5066586-5066605 None:intergenic 55.0%
!! GTGTGTTGGAAGCGCTCCTT+TGG + chr1_2:5066590-5066609 Msa0051020:CDS 55.0%
ATGAGGCTAAGGCCGTTGTC+AGG + chr1_2:5066668-5066687 Msa0051020:CDS 55.0%
AGGTGGTTCGCTTCACGTCT+AGG + chr1_2:5067137-5067156 Msa0051020:CDS 55.0%
GGTGGTTCGCTTCACGTCTA+GGG + chr1_2:5067138-5067157 Msa0051020:CDS 55.0%
GATCCTTGCGAGTGCAGACA+GGG - chr1_2:5067225-5067244 None:intergenic 55.0%
AGATCCTTGCGAGTGCAGAC+AGG - chr1_2:5067226-5067245 None:intergenic 55.0%
TGTCTGCACTCGCAAGGATC+TGG + chr1_2:5067225-5067244 Msa0051020:CDS 55.0%
GAGGGACCCACTAGGTGTGT+TGG + chr1_2:5066576-5066595 Msa0051020:CDS 60.0%
GTTCCCTGTCTGCACTCGCA+AGG + chr1_2:5067219-5067238 Msa0051020:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 5064440 5067584 5064440 ID=Msa0051020;Name=Msa0051020
chr1_2 mRNA 5064440 5067584 5064440 ID=Msa0051020-mRNA-1;Parent=Msa0051020;Name=Msa0051020-mRNA-1;_AED=0.05;_eAED=0.05;_QI=106|1|1|1|1|1|6|290|468
chr1_2 exon 5064440 5064891 5064440 ID=Msa0051020-mRNA-1:exon:1393;Parent=Msa0051020-mRNA-1
chr1_2 exon 5065458 5065675 5065458 ID=Msa0051020-mRNA-1:exon:1394;Parent=Msa0051020-mRNA-1
chr1_2 exon 5065819 5065995 5065819 ID=Msa0051020-mRNA-1:exon:1395;Parent=Msa0051020-mRNA-1
chr1_2 exon 5066081 5066236 5066081 ID=Msa0051020-mRNA-1:exon:1396;Parent=Msa0051020-mRNA-1
chr1_2 exon 5066508 5066784 5066508 ID=Msa0051020-mRNA-1:exon:1397;Parent=Msa0051020-mRNA-1
chr1_2 exon 5067062 5067584 5067062 ID=Msa0051020-mRNA-1:exon:1398;Parent=Msa0051020-mRNA-1
chr1_2 five_prime_UTR 5064440 5064545 5064440 ID=Msa0051020-mRNA-1:five_prime_utr;Parent=Msa0051020-mRNA-1
chr1_2 CDS 5064546 5064891 5064546 ID=Msa0051020-mRNA-1:cds;Parent=Msa0051020-mRNA-1
chr1_2 CDS 5065458 5065675 5065458 ID=Msa0051020-mRNA-1:cds;Parent=Msa0051020-mRNA-1
chr1_2 CDS 5065819 5065995 5065819 ID=Msa0051020-mRNA-1:cds;Parent=Msa0051020-mRNA-1
chr1_2 CDS 5066081 5066236 5066081 ID=Msa0051020-mRNA-1:cds;Parent=Msa0051020-mRNA-1
chr1_2 CDS 5066508 5066784 5066508 ID=Msa0051020-mRNA-1:cds;Parent=Msa0051020-mRNA-1
chr1_2 CDS 5067062 5067294 5067062 ID=Msa0051020-mRNA-1:cds;Parent=Msa0051020-mRNA-1
chr1_2 three_prime_UTR 5067295 5067584 5067295 ID=Msa0051020-mRNA-1:three_prime_utr;Parent=Msa0051020-mRNA-1
Gene Sequence

>Msa0051020

ATGTTCCACAGCAACACTCTACCGATCTCAATCTCCGACGACGAAACCGATGAACTAGGTCGAATGCGCGTTCGTGCTCGCCGTAAACGAAAGAAACTCGGTAACAAACGTTTCTTCAAGAAGCTTCTTGTTAAATACTGGATGCTACTCATCATTATTCCAGCTGCGTTTTTACTCTTTTACGAGATTACACGAATTGGTTTAAGACCAGGTAGTTCTTCTTCCAACATTGCTTCAACAACGACAAATCAAGATAATCATGATCATCGATCTAAAGAGACCATTGTTAAAACTAACTTGAATCGTCTTGATCCTACTACTCATGTTGTTGCTGGTGTTAGAGAACGTTGCTTGAAGCTTCTACCACCTGAAAAACTTGAGCAACTAGAGATTCCCGTGGAAGAAGAATCTAGTTTACCTATTGGTAAAGTCTTGTATATGTCAGCGACTGATGCGTCTTTAATAGGAGGGAATGCTACATTGTCTCAATTGCGTGCAGAGGATACAAGTTTTAATTTATTTACTGGAAACCAAACATTTGAGGAAAGAGATAGAAGTTTTGAGGTGAAAGAAACTACGACGGCACATTGTGGGTTCTACAGTGCGAATGGTGGGTTTAGGATATCAGATGAAGATAAAAGTTTCATGCAAGGTTGCAAAGTGGTTGTATCTACTTGTGCATTTGGTGGCGGAGATGATCTCTATCAACCGATTGGAATGTCAGAGGCTTCACTTAAGAAGGTTTGCTATGTAGCATTCTGGGATGAAATCACACTAAAAGCGCAGGAATTAGTGGGTCGCAGAGTTGGGGATAATGGATTTGTTGGAAAGTGGCGTGTTATTGTCGTTCAGGATCTTCCTTTTTCTGATCAAAGGTTGAATGGTAAAATTCCCAAGATGTTAAGCCATCGCCTTTTCCCTCAAGCAAAATACTCTATTTGGGTAGACTCCAAGTCCCAATTTAGGAGGGACCCACTAGGTGTGTTGGAAGCGCTCCTTTGGCGCACAAGTTCTGTACTTGCCATATCAGAACATGGAGCTCGTAGTAGTGTCTATGATGAGGCTAAGGCCGTTGTCAGGAAAAACAAAGCGAAGCCAGAGGAAGTTGAAGTGCAACTGAATCAATACAGAAAAGATGGCATGCCTGTAGACAAGAGATTTAATGGAAAGAAAGCTCTATGTGAAGCCTCTGTTATCGTCAGGAAGCATACGCCACTAACTAATCTATTGATGTGCGTCTGGTTTAATGAGGTGGTTCGCTTCACGTCTAGGGATCAGCTCAGCTTCCCATATGTTCTGTGGCGGTTGAAAGCATTCAAAAACATTAACATGTTCCCTGTCTGCACTCGCAAGGATCTGGTCAATAGCATGGGACACATCCGCAAAGCAAAACCATTGCAAAGCTGA

Protein sequence

>Msa0051020

MFHSNTLPISISDDETDELGRMRVRARRKRKKLGNKRFFKKLLVKYWMLLIIIPAAFLLFYEITRIGLRPGSSSSNIASTTTNQDNHDHRSKETIVKTNLNRLDPTTHVVAGVRERCLKLLPPEKLEQLEIPVEEESSLPIGKVLYMSATDASLIGGNATLSQLRAEDTSFNLFTGNQTFEERDRSFEVKETTTAHCGFYSANGGFRISDEDKSFMQGCKVVVSTCAFGGGDDLYQPIGMSEASLKKVCYVAFWDEITLKAQELVGRRVGDNGFVGKWRVIVVQDLPFSDQRLNGKIPKMLSHRLFPQAKYSIWVDSKSQFRRDPLGVLEALLWRTSSVLAISEHGARSSVYDEAKAVVRKNKAKPEEVEVQLNQYRKDGMPVDKRFNGKKALCEASVIVRKHTPLTNLLMCVWFNEVVRFTSRDQLSFPYVLWRLKAFKNINMFPVCTRKDLVNSMGHIRKAKPLQS*