AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0462780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0462780 MtrunA17_Chr3g0112731 96.990 598 11 3 1 594 1 595 0.0 1189
Msa0462780 MtrunA17_Chr5g0436141 73.655 539 131 5 50 586 32 561 0.0 801
Msa0462780 MtrunA17_Chr7g0240501 62.402 508 175 5 58 564 144 636 0.0 647
Msa0462780 MtrunA17_Chr4g0008771 63.403 429 148 3 74 498 64 487 0.0 550
Msa0462780 MtrunA17_Chr4g0038651 56.600 447 185 4 98 538 82 525 2.71e-176 511
Msa0462780 MtrunA17_Chr8g0348921 56.701 388 147 4 93 467 87 466 1.56e-144 426
Msa0462780 MtrunA17_Chr4g0004771 50.131 381 162 5 103 482 90 443 1.96e-132 398
Msa0462780 MtrunA17_Chr7g0247761 51.781 421 139 4 103 467 113 525 3.47e-132 397
Msa0462780 MtrunA17_Chr6g0485861 51.053 380 160 5 105 477 98 458 3.51e-130 392
Msa0462780 MtrunA17_Chr2g0331631 48.750 400 186 4 68 466 51 432 1.02e-129 390
Msa0462780 MtrunA17_Chr5g0408591 46.739 368 186 3 99 466 114 471 1.35e-109 339
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0462780 AT5G05940.1 60.000 585 212 11 1 573 1 575 0.0 669
Msa0462780 AT5G02010.1 68.276 435 114 6 86 514 54 470 0.0 610
Msa0462780 AT5G05940.2 63.182 440 151 4 1 434 1 435 0.0 540
Msa0462780 AT3G55660.1 55.263 532 185 13 58 559 69 577 0.0 539
Msa0462780 AT4G38430.1 53.333 480 199 6 35 512 40 496 2.21e-171 498
Msa0462780 AT3G55660.2 61.417 381 131 5 58 434 69 437 7.63e-161 467
Msa0462780 AT4G00460.2 53.173 457 185 8 25 473 38 473 2.99e-154 451
Msa0462780 AT4G00460.4 53.173 457 185 8 25 473 38 473 2.99e-154 451
Msa0462780 AT1G01700.1 51.860 457 198 7 20 467 36 479 1.57e-147 435
Msa0462780 AT1G01700.4 48.665 487 198 8 20 467 36 509 3.31e-141 420
Msa0462780 AT2G45890.1 52.880 382 159 6 102 473 92 462 3.55e-134 400
Msa0462780 AT3G24620.1 52.174 368 156 5 102 468 84 432 5.09e-131 394
Msa0462780 AT1G52240.1 52.575 369 152 5 104 471 105 451 7.95e-127 384
Msa0462780 AT4G13240.1 50.267 374 166 5 98 470 69 423 2.62e-126 382
Msa0462780 AT1G01700.3 49.425 435 191 8 20 438 36 457 6.91e-126 379
Msa0462780 AT4G00460.3 56.305 341 134 5 140 473 8 340 2.37e-125 373
Msa0462780 AT1G79860.1 48.501 367 168 5 101 466 90 436 1.09e-121 370
Msa0462780 AT5G19560.1 49.189 370 170 4 102 470 43 395 2.73e-120 365
Msa0462780 AT5G19560.5 49.189 370 170 4 102 470 43 395 2.73e-120 365
Msa0462780 AT5G19560.4 49.189 370 170 4 102 470 62 414 6.42e-120 365
Msa0462780 AT3G16130.1 49.867 377 163 6 100 471 87 442 2.81e-119 364
Msa0462780 AT5G19560.2 47.605 334 157 4 102 434 62 378 9.64e-104 318
Msa0462780 AT1G31650.2 42.779 367 201 2 103 469 108 465 1.21e-100 316
Msa0462780 AT1G31650.1 42.779 367 201 2 103 469 136 493 7.30e-100 315
Msa0462780 AT4G00460.1 52.427 309 128 6 25 329 38 331 9.15e-95 294
Msa0462780 AT1G01700.5 51.163 301 137 4 20 315 36 331 8.92e-89 280
Msa0462780 AT1G01700.2 51.163 301 137 4 20 315 36 331 8.92e-89 280
Msa0462780 AT5G19560.3 46.763 278 130 4 194 470 5 265 8.33e-81 259

Find 138 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAGTTCCTGAGTCATATT+TGG 0.209473 3_3:-61968729 Msa0462780:CDS
GTTTCACAGCTACAGAATTT+TGG 0.237624 3_3:-61968970 Msa0462780:CDS
CCGAATTTCACAGCATTTAG+AGG 0.271027 3_3:+61967331 None:intergenic
CAGCATTGCTTTGGCTGAAA+TGG 0.280188 3_3:-61968750 Msa0462780:CDS
TTCTGCAGGTAATGACTTGC+AGG 0.301595 3_3:-61969177 Msa0462780:intron
GAACATGTAGCTACTGCATT+TGG 0.303375 3_3:-61969432 Msa0462780:intron
GGAGTTCTCTCCCCTCTTAC+AGG 0.304069 3_3:+61967532 None:intergenic
AGAAAGCTACTCTAGAGTTT+TGG 0.305551 3_3:-61967767 Msa0462780:CDS
TTGTTGAATTAATACCTTCT+TGG 0.307496 3_3:-61969320 Msa0462780:CDS
GCTTCGGGAACACGGGGAAC+GGG 0.327886 3_3:+61968857 None:intergenic
CTTGTTGCATTGGATCTTGC+TGG 0.334600 3_3:+61967901 None:intergenic
ACTACTACCAAATAAAATAT+TGG 0.339994 3_3:+61967246 None:intergenic
TTGAAATGGAAAAGGTGAAA+TGG 0.342721 3_3:+61970993 None:intergenic
GTTAAGGACTTCATGCTTGA+TGG 0.349943 3_3:-61968016 Msa0462780:CDS
AAACCTCAGCGTCGCGGCTT+TGG 0.359263 3_3:-61967463 Msa0462780:CDS
CCTGAGACAGACACTGAAAA+TGG 0.361705 3_3:+61967616 None:intergenic
GTAGTTGAACGGTTGGGATT+AGG 0.362566 3_3:+61968058 None:intergenic
TGAAATGGAAAAGGTGAAAT+GGG 0.365912 3_3:+61970994 None:intergenic
CTTCTCACTGAGACCTGCTT+CGG 0.374692 3_3:+61968841 None:intergenic
CCTCTAAATGCTGTGAAATT+CGG 0.375055 3_3:-61967331 Msa0462780:CDS
ACGCACAAAATGTACAACTA+TGG 0.375415 3_3:-61970681 Msa0462780:CDS
CTACTGCATTTGGGCAACTT+TGG 0.383497 3_3:-61969422 Msa0462780:CDS
AAAAGGGGTTTGCACTGCTT+TGG 0.392592 3_3:-61970226 Msa0462780:CDS
ACCTCAAGTTTCTTTCCATC+AGG 0.394767 3_3:+61969288 None:intergenic
AGAGCTTTGTCAAATTATCT+TGG 0.407039 3_3:-61967433 Msa0462780:CDS
GGTGAAGATATGTCAGGTTC+AGG 0.410078 3_3:-61970249 Msa0462780:CDS
GTTCAACTACAAAGTCTTCA+TGG 0.412655 3_3:-61968045 Msa0462780:CDS
TTCTCACTGAGACCTGCTTC+GGG 0.416408 3_3:+61968842 None:intergenic
GTCTATCAACAGCATTGCTT+TGG 0.420189 3_3:-61968759 Msa0462780:CDS
TGGGTTTGTTAGAACTCAAC+GGG 0.421434 3_3:+61971013 None:intergenic
TGGAAGCTGCTATTTATCTA+TGG 0.429701 3_3:-61968108 Msa0462780:CDS
GACTTTGTAGTTGAACGGTT+GGG 0.435846 3_3:+61968052 None:intergenic
TCCTTGAAGCATCGGTTCCC+TGG 0.436072 3_3:-61967947 Msa0462780:CDS
GTTCCCCGTGTTCCCGAAGC+AGG 0.436453 3_3:-61968854 Msa0462780:CDS
AACATGTAGCTACTGCATTT+GGG 0.437715 3_3:-61969431 Msa0462780:intron
GAAGTTGAAGCTAAATCAAA+TGG 0.440177 3_3:-61970809 Msa0462780:CDS
GTGAATGGATACAAATGAAA+GGG 0.443011 3_3:+61967268 None:intergenic
AATGCCATTACTAATCTTTG+TGG 0.444234 3_3:-61970195 Msa0462780:intron
TGCTTCGGGAACACGGGGAA+CGG 0.446615 3_3:+61968856 None:intergenic
GAATTGGAACCTTGTTGCAT+TGG 0.446692 3_3:+61967891 None:intergenic
TTACTTAAATCTGAAGTAGT+TGG 0.449261 3_3:-61967196 Msa0462780:three_prime_UTR
TTATCGAGTTTGCGAAGGGC+TGG 0.449399 3_3:+61969127 None:intergenic
GATATGTCAGGTTCAGGAAA+AGG 0.450921 3_3:-61970243 Msa0462780:CDS
TCTTTCTTCTCACAAGGTAG+TGG 0.451314 3_3:+61969390 None:intergenic
ACACAAACATTTCAGGATGT+TGG 0.451753 3_3:-61967802 Msa0462780:intron
AGCCGCTGATTCAGAAGGTT+CGG 0.452812 3_3:-61968927 Msa0462780:CDS
TCAGGAAATGTTTGCCAAGA+AGG 0.453625 3_3:+61969306 None:intergenic
AAATCAAATGGTACTCCTCT+TGG 0.453653 3_3:-61970797 Msa0462780:CDS
GAAAGTGTAGCTTTGAGAAT+AGG 0.456755 3_3:+61970770 None:intergenic
AGATAAAGTTTCCATCTTTG+AGG 0.460415 3_3:+61970958 None:intergenic
GCCAGGGAACCGATGCTTCA+AGG 0.461493 3_3:+61967946 None:intergenic
TTCTAAGTTCCTTGAAGCAT+CGG 0.472432 3_3:-61967955 Msa0462780:CDS
ATATGTCAGGTTCAGGAAAA+GGG 0.474996 3_3:-61970242 Msa0462780:CDS
ACTGTTTAAGGATGTTTGAA+AGG 0.479254 3_3:+61971093 None:intergenic
TTTGCATTGGTTCCTACAAC+GGG 0.484042 3_3:-61967667 Msa0462780:CDS
GTTGATGCAAATATCTGTCC+TGG 0.487154 3_3:+61969153 None:intergenic
CCAAATAAAATATTGGTGAA+TGG 0.488327 3_3:+61967253 None:intergenic
ACTATGGATGTAAAAGTGTC+AGG 0.488542 3_3:-61970665 Msa0462780:intron
AGAAATGTGGCAAAGAGAGA+TGG 0.490084 3_3:-61969370 Msa0462780:CDS
CCATTGATTAGTCCTGTAAG+AGG 0.490411 3_3:-61967544 Msa0462780:CDS
AGAACAAGAACGCTTTGAGC+TGG 0.498779 3_3:+61970748 None:intergenic
GAAACCACATTACCCGTTGT+AGG 0.500182 3_3:+61967655 None:intergenic
TTGTTGTTGTTGTGGAGGAA+AGG 0.502003 3_3:+61967511 None:intergenic
ACATTCAGACAGATTTGCAT+TGG 0.509738 3_3:-61967680 Msa0462780:CDS
ACTCCACACAAAGCAGCATT+CGG 0.510466 3_3:-61967592 Msa0462780:CDS
TCTTGGCAAACATTTCCTGA+TGG 0.512838 3_3:-61969303 Msa0462780:CDS
CTGAATTGACTTGCGAAAAG+AGG 0.513814 3_3:+61968904 None:intergenic
AAGGTAGTTTGAGTTAAGCC+AGG 0.520536 3_3:+61967929 None:intergenic
CTTCGGGAACACGGGGAACG+GGG 0.523029 3_3:+61968858 None:intergenic
CACATTTCTTTCTTCTCACA+AGG 0.525180 3_3:+61969384 None:intergenic
ACACAAATCAAACTTGGAAG+TGG 0.525473 3_3:-61970705 Msa0462780:CDS
GAGACCTGCTTCGGGAACAC+GGG 0.529025 3_3:+61968850 None:intergenic
AAACAAACACAAATCAAACT+TGG 0.529417 3_3:-61970711 Msa0462780:CDS
AGATTTGCAAAATTGTTGCT+AGG 0.530179 3_3:-61970270 Msa0462780:CDS
TTGCTAGGTGAAGATATGTC+AGG 0.530876 3_3:-61970255 Msa0462780:CDS
TTCAACTACAAAGTCTTCAT+GGG 0.532814 3_3:-61968044 Msa0462780:CDS
TGAGACCTGCTTCGGGAACA+CGG 0.534669 3_3:+61968849 None:intergenic
TTGGATCTTGCTGGTATCCA+AGG 0.534759 3_3:+61967910 None:intergenic
GGTGAATGGATACAAATGAA+AGG 0.539075 3_3:+61967267 None:intergenic
CGAGTTTGCGAAGGGCTGGA+AGG 0.544385 3_3:+61969131 None:intergenic
AGACTTTGTAGTTGAACGGT+TGG 0.547598 3_3:+61968051 None:intergenic
GGACTAATCAATGGCACAGA+AGG 0.548607 3_3:+61967553 None:intergenic
AGGTAATGACTTGCAGGCCC+AGG 0.549183 3_3:-61969171 Msa0462780:CDS
TGGCTTAACTCAAACTACCT+TGG 0.552224 3_3:-61967927 Msa0462780:CDS
CATTGATGATTTGTTATACG+TGG 0.554608 3_3:-61967716 Msa0462780:CDS
CATACCACAAAGATTAGTAA+TGG 0.555497 3_3:+61970191 None:intergenic
CCTCTTACAGGACTAATCAA+TGG 0.560425 3_3:+61967544 None:intergenic
ATGAAGACTTTGTAGTTGAA+CGG 0.561493 3_3:+61968047 None:intergenic
CAGAATGGAAGAACTTGCCT+CGG 0.562732 3_3:-61968238 Msa0462780:CDS
ATTTGCATTGGTTCCTACAA+CGG 0.562897 3_3:-61967668 Msa0462780:CDS
CATTGATTAGTCCTGTAAGA+GGG 0.566090 3_3:-61967543 Msa0462780:CDS
TGGGATTAGGCGTGGATCTG+TGG 0.568891 3_3:+61968071 None:intergenic
GGCAATTCAACTGAGGTCAA+TGG 0.576601 3_3:-61967385 Msa0462780:CDS
GGTTCCTACAACGGGTAATG+TGG 0.577051 3_3:-61967659 Msa0462780:CDS
CACATCAGATCAATTCTCCT+CGG 0.578395 3_3:-61968194 Msa0462780:CDS
AACAGATGTTGATATGATGA+AGG 0.579015 3_3:-61970295 Msa0462780:intron
TGAACGGTTGGGATTAGGCG+TGG 0.579280 3_3:+61968063 None:intergenic
GCATGTTATCGAGTTTGCGA+AGG 0.584286 3_3:+61969122 None:intergenic
ATGGGTTTGTTAGAACTCAA+CGG 0.584882 3_3:+61971012 None:intergenic
ATTGTAGCCGCTGATTCAGA+AGG 0.591209 3_3:-61968932 Msa0462780:CDS
CAAATGGTACTCCTCTTGGT+TGG 0.592121 3_3:-61970793 Msa0462780:CDS
CATGTTATCGAGTTTGCGAA+GGG 0.595448 3_3:+61969123 None:intergenic
TATGTCAGGTTCAGGAAAAG+GGG 0.595512 3_3:-61970241 Msa0462780:CDS
GGCACAGAAGGCGAAAACTT+AGG 0.596415 3_3:+61967565 None:intergenic
TAGAAGTGAGACCTTGGGGA+GGG 0.597116 3_3:+61968703 None:intergenic
TTGATGCAAATATCTGTCCT+GGG 0.598206 3_3:+61969154 None:intergenic
TGTGGCAAAGAGAGATGGAA+TGG 0.599356 3_3:-61969365 Msa0462780:CDS
AGGGTTTCCAAATATGACTC+AGG 0.603777 3_3:+61968722 None:intergenic
AGAGGTCTAAACAATCAAGT+AGG 0.606917 3_3:+61968167 None:intergenic
TCTAGAACTACAAGTTTCAG+TGG 0.607091 3_3:-61970863 Msa0462780:CDS
AGGTAGTTTGAGTTAAGCCA+GGG 0.610626 3_3:+61967930 None:intergenic
TGAATGGATACAAATGAAAG+GGG 0.619752 3_3:+61967269 None:intergenic
ACACCAAAGCCGCGACGCTG+AGG 0.624563 3_3:+61967460 None:intergenic
AGCGGCAAGAAGAGAAGTGG+TGG 0.627026 3_3:-61968883 Msa0462780:CDS
TTCAGCGGCAAGAAGAGAAG+TGG 0.628274 3_3:-61968886 Msa0462780:CDS
CAGCAAGATCCAATGCAACA+AGG 0.629004 3_3:-61967900 Msa0462780:intron
TCCTGATGGAAAGAAACTTG+AGG 0.634337 3_3:-61969289 Msa0462780:intron
ATTGATCTGATGTGATGTAT+CGG 0.636126 3_3:+61968203 None:intergenic
GTGCCGAATGCTGCTTTGTG+TGG 0.636553 3_3:+61967589 None:intergenic
AGACCTGCTTCGGGAACACG+GGG 0.636721 3_3:+61968851 None:intergenic
GTGCAATATGTTCAGAAGAG+AGG 0.640548 3_3:+61968149 None:intergenic
TCAACTACAAAGTCTTCATG+GGG 0.644332 3_3:-61968043 Msa0462780:CDS
ATTGATTAGTCCTGTAAGAG+GGG 0.657034 3_3:-61967542 Msa0462780:CDS
ATATTTGGAAACCCTCCCCA+AGG 0.663884 3_3:-61968714 Msa0462780:intron
GAGACTAAAACAAAGACATG+TGG 0.664012 3_3:-61967406 Msa0462780:CDS
CTTGTGAGAAGAAAGAAATG+TGG 0.666461 3_3:-61969383 Msa0462780:CDS
GGCCGAACCTTCTGAATCAG+CGG 0.670869 3_3:+61968925 None:intergenic
AACGTCAAACCTCAGCGTCG+CGG 0.676876 3_3:-61967469 Msa0462780:CDS
TTCTGAAGTAGAAATTGACG+AGG 0.692550 3_3:+61970829 None:intergenic
TTAGAAGTGAGACCTTGGGG+AGG 0.695345 3_3:+61968702 None:intergenic
ATCGGTAAATAAAATCTCCG+AGG 0.703369 3_3:+61968221 None:intergenic
ACAATCAAGTAGGCACTCCG+AGG 0.706887 3_3:+61968177 None:intergenic
TTGAGAATAGGCCAACCAAG+AGG 0.709258 3_3:+61970782 None:intergenic
GACATGTGGCAATTCAACTG+AGG 0.716254 3_3:-61967392 Msa0462780:CDS
GATAAATAGCAGCTTCCACG+CGG 0.726168 3_3:+61968113 None:intergenic
GTTGTGATGATGAAGACGTG+TGG 0.743684 3_3:+61971121 None:intergenic
ACTCGAGATTGCAAACCGCG+TGG 0.746691 3_3:-61968128 Msa0462780:CDS
CAACTACAAAGTCTTCATGG+GGG 0.781366 3_3:-61968042 Msa0462780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTCAAAGTTTGAAAAAA+TGG + chr3_3:61967150-61967169 None:intergenic 15.0%
!!! GTTTTATTCTGTAATTAAAT+TGG - chr3_3:61967971-61967990 Msa0462780:CDS 15.0%
!!! ATTGAAATCAATTTTTGTTA+CGG - chr3_3:61968883-61968902 Msa0462780:CDS 15.0%
!! TATGTGAATTATTATGATTA+TGG - chr3_3:61969175-61969194 Msa0462780:intron 15.0%
!! ATCTTAGTCATAAAATAAAA+TGG + chr3_3:61969747-61969766 None:intergenic 15.0%
!!! ATTTTATGACTAAGATAATT+AGG - chr3_3:61969751-61969770 Msa0462780:intron 15.0%
!!! TTTTATGACTAAGATAATTA+GGG - chr3_3:61969752-61969771 Msa0462780:intron 15.0%
!!! TATTTTATCAATTTACAGAA+TGG - chr3_3:61970140-61970159 Msa0462780:intron 15.0%
!!! ATATATAACTTGTATAGAAT+TGG + chr3_3:61970521-61970540 None:intergenic 15.0%
!! TTTGAAAAAATATAGGATGT+TGG + chr3_3:61967331-61967350 None:intergenic 20.0%
!! AGACAAGTTTGAAAAAATAT+AGG + chr3_3:61967338-61967357 None:intergenic 20.0%
!!! AAAAGTTTTTGAAATGGAAA+AGG + chr3_3:61967411-61967430 None:intergenic 20.0%
!! AAATCTCAAAAGAAAAAAGA+TGG - chr3_3:61967470-61967489 Msa0462780:CDS 20.0%
!! AATCTCAAAAGAAAAAAGAT+GGG - chr3_3:61967471-61967490 Msa0462780:CDS 20.0%
!! TATTCTGTAATTAAATTGGT+TGG - chr3_3:61967975-61967994 Msa0462780:CDS 20.0%
!!! GATTTTTAAGTGCTAATTAT+TGG - chr3_3:61968049-61968068 Msa0462780:CDS 20.0%
!!! GGATTTGTCTTTTTTTTTTT+TGG - chr3_3:61968070-61968089 Msa0462780:CDS 20.0%
!! AAAATTTGTCAACTACAATA+TGG + chr3_3:61968243-61968262 None:intergenic 20.0%
!!! TAATTATGTGTTTCTTTTCA+TGG - chr3_3:61968322-61968341 Msa0462780:intron 20.0%
!!! TAAAATTGATTTTGACATGT+TGG - chr3_3:61968375-61968394 Msa0462780:intron 20.0%
!!! AATATCTATTTGAGTTGATT+AGG - chr3_3:61968400-61968419 Msa0462780:intron 20.0%
!! TGTTATTAATTCCAAAAGAA+TGG + chr3_3:61968563-61968582 None:intergenic 20.0%
!!! TTTACATTTTGTTTTAACAC+AGG - chr3_3:61969388-61969407 Msa0462780:CDS 20.0%
!! GTCATAAAATAAAATGGAAT+AGG + chr3_3:61969741-61969760 None:intergenic 20.0%
!! TTAATTGACAAAAGATTAAC+TGG + chr3_3:61970088-61970107 None:intergenic 20.0%
!! AAAATGTGTCAATGTTAAAA+AGG + chr3_3:61970571-61970590 None:intergenic 20.0%
!! ACTACTACCAAATAAAATAT+TGG + chr3_3:61971150-61971169 None:intergenic 20.0%
!!! ATGTTGGTTTTAACTGTTTA+AGG + chr3_3:61967315-61967334 None:intergenic 25.0%
!!! GGTAAGAAAAGTTTTTGAAA+TGG + chr3_3:61967417-61967436 None:intergenic 25.0%
! AAACAAACACAAATCAAACT+TGG - chr3_3:61967682-61967701 Msa0462780:CDS 25.0%
!! GTAGTTGACAAATTTTCTTT+TGG - chr3_3:61968247-61968266 Msa0462780:intron 25.0%
!!! TTCTTTTGGTTTGTTTAAGT+TGG - chr3_3:61968261-61968280 Msa0462780:intron 25.0%
! TTAAGTGTTAAAAACACGTT+TGG + chr3_3:61968474-61968493 None:intergenic 25.0%
! TAAATTTAGTGTTCAACTCA+CGG - chr3_3:61968491-61968510 Msa0462780:intron 25.0%
!!! ATGGTGTTATTAATGTCAAA+AGG - chr3_3:61968733-61968752 Msa0462780:CDS 25.0%
! TGTTATTAATGTCAAAAGGA+TGG - chr3_3:61968737-61968756 Msa0462780:CDS 25.0%
! TTCATGTAAAAGTGAATTGA+AGG + chr3_3:61968809-61968828 None:intergenic 25.0%
! TTGTTGAATTAATACCTTCT+TGG - chr3_3:61969073-61969092 Msa0462780:intron 25.0%
! AAAGAAACTTGAGGTAAATT+TGG - chr3_3:61969113-61969132 Msa0462780:intron 25.0%
!! TGATTATGGTGTTTCTAATA+CGG - chr3_3:61969189-61969208 Msa0462780:intron 25.0%
! GTCTTTCTATATGAAATCAA+TGG + chr3_3:61969809-61969828 None:intergenic 25.0%
!! ACATTTTACACAAACATTTC+AGG - chr3_3:61970584-61970603 Msa0462780:intron 25.0%
! CCAAATAAAATATTGGTGAA+TGG + chr3_3:61971143-61971162 None:intergenic 25.0%
!! CCATTCACCAATATTTTATT+TGG - chr3_3:61971140-61971159 Msa0462780:five_prime_UTR 25.0%
!! TTACTTAAATCTGAAGTAGT+TGG - chr3_3:61971197-61971216 Msa0462780:five_prime_UTR 25.0%
ACTGTTTAAGGATGTTTGAA+AGG + chr3_3:61967303-61967322 None:intergenic 30.0%
TGAAATGGAAAAGGTGAAAT+GGG + chr3_3:61967402-61967421 None:intergenic 30.0%
TTGAAATGGAAAAGGTGAAA+TGG + chr3_3:61967403-61967422 None:intergenic 30.0%
! AACTTTTCTTACCTCAAAGA+TGG - chr3_3:61967424-61967443 Msa0462780:CDS 30.0%
AGATAAAGTTTCCATCTTTG+AGG + chr3_3:61967438-61967457 None:intergenic 30.0%
GAAGTTGAAGCTAAATCAAA+TGG - chr3_3:61967584-61967603 Msa0462780:CDS 30.0%
AACAGATGTTGATATGATGA+AGG - chr3_3:61968098-61968117 Msa0462780:CDS 30.0%
AGATTTGCAAAATTGTTGCT+AGG - chr3_3:61968123-61968142 Msa0462780:CDS 30.0%
AATGCCATTACTAATCTTTG+TGG - chr3_3:61968198-61968217 Msa0462780:CDS 30.0%
CATACCACAAAGATTAGTAA+TGG + chr3_3:61968205-61968224 None:intergenic 30.0%
! ATGTGTTTCTTTTCATGGTA+AGG - chr3_3:61968327-61968346 Msa0462780:intron 30.0%
ATTCCAAAAGAATGGTAGTT+TGG + chr3_3:61968555-61968574 None:intergenic 30.0%
!!! CTACCACTCTTTTTTTTGAT+TGG - chr3_3:61968586-61968605 Msa0462780:intron 30.0%
TGTCCAATCAAAAAAAAGAG+TGG + chr3_3:61968592-61968611 None:intergenic 30.0%
TTGTAAAAGTGAGTTCAATG+TGG + chr3_3:61968853-61968872 None:intergenic 30.0%
CATACAACTTACTGTTTGTT+TGG + chr3_3:61968914-61968933 None:intergenic 30.0%
! TATCGAATCTTGTTCTTTTG+TGG - chr3_3:61969304-61969323 Msa0462780:CDS 30.0%
!! GAATTTTGGTATGTTGATCA+AGG - chr3_3:61969437-61969456 Msa0462780:intron 30.0%
TGGAATAGGCTATAGAAAAA+AGG + chr3_3:61969727-61969746 None:intergenic 30.0%
! AACCATTAGTTTAGATCGAA+TGG - chr3_3:61969868-61969887 Msa0462780:intron 30.0%
AACCATTCGATCTAAACTAA+TGG + chr3_3:61969873-61969892 None:intergenic 30.0%
CTAAGTCTATAATAGGGTAA+TGG + chr3_3:61969962-61969981 None:intergenic 30.0%
CATTACCCTATTATAGACTT+AGG - chr3_3:61969960-61969979 Msa0462780:intron 30.0%
GTATGCCTAAGTCTATAATA+GGG + chr3_3:61969968-61969987 None:intergenic 30.0%
TTAACTGGAGAATATTTCAC+AGG + chr3_3:61970073-61970092 None:intergenic 30.0%
ATTGATCTGATGTGATGTAT+CGG + chr3_3:61970193-61970212 None:intergenic 30.0%
ATGAAGACTTTGTAGTTGAA+CGG + chr3_3:61970349-61970368 None:intergenic 30.0%
TTCAACTACAAAGTCTTCAT+GGG - chr3_3:61970349-61970368 Msa0462780:intron 30.0%
!! CATTGATGATTTGTTATACG+TGG - chr3_3:61970677-61970696 Msa0462780:CDS 30.0%
! AGAGCTTTGTCAAATTATCT+TGG - chr3_3:61970960-61970979 Msa0462780:exon 30.0%
!! GTTCTGTTTTCTTGTTACTT+GGG + chr3_3:61971040-61971059 None:intergenic 30.0%
! TGTTCTGTTTTCTTGTTACT+TGG + chr3_3:61971041-61971060 None:intergenic 30.0%
TGAATGGATACAAATGAAAG+GGG + chr3_3:61971127-61971146 None:intergenic 30.0%
GTGAATGGATACAAATGAAA+GGG + chr3_3:61971128-61971147 None:intergenic 30.0%
CGGGAAAAAAAGAACAACAT+GGG + chr3_3:61967364-61967383 None:intergenic 35.0%
ACGGGAAAAAAAGAACAACA+TGG + chr3_3:61967365-61967384 None:intergenic 35.0%
!! ATGGGTTTGTTAGAACTCAA+CGG + chr3_3:61967384-61967403 None:intergenic 35.0%
! TCTAGAACTACAAGTTTCAG+TGG - chr3_3:61967530-61967549 Msa0462780:CDS 35.0%
!! TTCTGAAGTAGAAATTGACG+AGG + chr3_3:61967567-61967586 None:intergenic 35.0%
AAATCAAATGGTACTCCTCT+TGG - chr3_3:61967596-61967615 Msa0462780:CDS 35.0%
!! GAAAGTGTAGCTTTGAGAAT+AGG + chr3_3:61967626-61967645 None:intergenic 35.0%
ACACAAATCAAACTTGGAAG+TGG - chr3_3:61967688-61967707 Msa0462780:CDS 35.0%
ACGCACAAAATGTACAACTA+TGG - chr3_3:61967712-61967731 Msa0462780:CDS 35.0%
!! ACTATGGATGTAAAAGTGTC+AGG - chr3_3:61967728-61967747 Msa0462780:CDS 35.0%
ATATGTCAGGTTCAGGAAAA+GGG - chr3_3:61968151-61968170 Msa0462780:CDS 35.0%
!! TGGTTTGTTTAAGTTGGCAA+AGG - chr3_3:61968267-61968286 Msa0462780:intron 35.0%
! GTACCAAACTACCATTCTTT+TGG - chr3_3:61968549-61968568 Msa0462780:intron 35.0%
ATACCAATACCATCATGTCT+AGG - chr3_3:61968641-61968660 Msa0462780:intron 35.0%
GTGTCCAATCAAAAAAAGAG+TGG - chr3_3:61968705-61968724 Msa0462780:intron 35.0%
TCCAATCAAAAAAAGAGTGG+TGG - chr3_3:61968708-61968727 Msa0462780:intron 35.0%
!!! ACCACCACTCTTTTTTTGAT+TGG + chr3_3:61968712-61968731 None:intergenic 35.0%
CAAAAAAAGAGTGGTGGTAA+TGG - chr3_3:61968714-61968733 Msa0462780:intron 35.0%
ATGTCAAAAGGATGGTAGTT+TGG - chr3_3:61968745-61968764 Msa0462780:CDS 35.0%
AAAGTGAGTTCAATGTGGAA+TGG + chr3_3:61968848-61968867 None:intergenic 35.0%
AACATGTAGCTACTGCATTT+GGG - chr3_3:61968962-61968981 Msa0462780:CDS 35.0%
CACATTTCTTTCTTCTCACA+AGG + chr3_3:61969012-61969031 None:intergenic 35.0%
CTTGTGAGAAGAAAGAAATG+TGG - chr3_3:61969010-61969029 Msa0462780:intron 35.0%
TGAAGTGATAGTTTCAGCAT+TGG + chr3_3:61969153-61969172 None:intergenic 35.0%
TTGATGCAAATATCTGTCCT+GGG + chr3_3:61969242-61969261 None:intergenic 35.0%
! GTTTCACAGCTACAGAATTT+TGG - chr3_3:61969423-61969442 Msa0462780:CDS 35.0%
TATGTTAGAAGTGAGACCTT+GGG + chr3_3:61969698-61969717 None:intergenic 35.0%
TTATGTTAGAAGTGAGACCT+TGG + chr3_3:61969699-61969718 None:intergenic 35.0%
TAGGGATTCAGATTTACACA+CGG - chr3_3:61969770-61969789 Msa0462780:intron 35.0%
TAGTTTAGATCGAATGGTTG+AGG - chr3_3:61969874-61969893 Msa0462780:intron 35.0%
! GAAACTTGTTTCCGATGAAT+AGG - chr3_3:61969926-61969945 Msa0462780:intron 35.0%
GATCTCATACACCTATTCAT+CGG + chr3_3:61969940-61969959 None:intergenic 35.0%
GGTATGCCTAAGTCTATAAT+AGG + chr3_3:61969969-61969988 None:intergenic 35.0%
TTATAGACTTAGGCATACCT+TGG - chr3_3:61969970-61969989 Msa0462780:intron 35.0%
AATGTAGGTGTAGATAACCA+AGG + chr3_3:61969990-61970009 None:intergenic 35.0%
ATCGGTAAATAAAATCTCCG+AGG + chr3_3:61970175-61970194 None:intergenic 35.0%
AGAGGTCTAAACAATCAAGT+AGG + chr3_3:61970229-61970248 None:intergenic 35.0%
! TGGAAGCTGCTATTTATCTA+TGG - chr3_3:61970285-61970304 Msa0462780:CDS 35.0%
GTTCAACTACAAAGTCTTCA+TGG - chr3_3:61970348-61970367 Msa0462780:intron 35.0%
TCAACTACAAAGTCTTCATG+GGG - chr3_3:61970350-61970369 Msa0462780:intron 35.0%
TTCTAAGTTCCTTGAAGCAT+CGG - chr3_3:61970438-61970457 Msa0462780:intron 35.0%
ACACAAACATTTCAGGATGT+TGG - chr3_3:61970591-61970610 Msa0462780:intron 35.0%
!!! AGAAAGCTACTCTAGAGTTT+TGG - chr3_3:61970626-61970645 Msa0462780:intron 35.0%
ACATTCAGACAGATTTGCAT+TGG - chr3_3:61970713-61970732 Msa0462780:CDS 35.0%
!! ATTTGCATTGGTTCCTACAA+CGG - chr3_3:61970725-61970744 Msa0462780:CDS 35.0%
! CATTGATTAGTCCTGTAAGA+GGG - chr3_3:61970850-61970869 Msa0462780:CDS 35.0%
! ATTGATTAGTCCTGTAAGAG+GGG - chr3_3:61970851-61970870 Msa0462780:CDS 35.0%
! TGTTGTTGTTGTTGTTGTTG+TGG + chr3_3:61970893-61970912 None:intergenic 35.0%
GAGACTAAAACAAAGACATG+TGG - chr3_3:61970987-61971006 Msa0462780:five_prime_UTR 35.0%
CCTCTAAATGCTGTGAAATT+CGG - chr3_3:61971062-61971081 Msa0462780:five_prime_UTR 35.0%
GGTGAATGGATACAAATGAA+AGG + chr3_3:61971129-61971148 None:intergenic 35.0%
!! ACGTGTGGCTTTTTAGGAAA+AGG + chr3_3:61967260-61967279 None:intergenic 40.0%
! ATGAAGACGTGTGGCTTTTT+AGG + chr3_3:61967266-61967285 None:intergenic 40.0%
!! TGGGTTTGTTAGAACTCAAC+GGG + chr3_3:61967383-61967402 None:intergenic 40.0%
TGTCAGACACTAACAAGTGT+CGG + chr3_3:61967824-61967843 None:intergenic 40.0%
TGACGTATTAGTGTTGTGTC+TGG - chr3_3:61967902-61967921 Msa0462780:CDS 40.0%
TCTGGTGTCTATGTATGTGT+CGG - chr3_3:61967920-61967939 Msa0462780:CDS 40.0%
! ATGTATGTGTCGGTCTTCAT+AGG - chr3_3:61967930-61967949 Msa0462780:CDS 40.0%
TTGCTAGGTGAAGATATGTC+AGG - chr3_3:61968138-61968157 Msa0462780:CDS 40.0%
GATATGTCAGGTTCAGGAAA+AGG - chr3_3:61968150-61968169 Msa0462780:CDS 40.0%
TATGTCAGGTTCAGGAAAAG+GGG - chr3_3:61968152-61968171 Msa0462780:CDS 40.0%
CATCCTAGACATGATGGTAT+TGG + chr3_3:61968647-61968666 None:intergenic 40.0%
CAATACCATCATGTCTAGGA+TGG - chr3_3:61968645-61968664 Msa0462780:intron 40.0%
CAATACCATCCTAGACATGA+TGG + chr3_3:61968653-61968672 None:intergenic 40.0%
! CATCATGTCTAGGATGGTAT+TGG - chr3_3:61968651-61968670 Msa0462780:intron 40.0%
GAACATGTAGCTACTGCATT+TGG - chr3_3:61968961-61968980 Msa0462780:CDS 40.0%
TCTTTCTTCTCACAAGGTAG+TGG + chr3_3:61969006-61969025 None:intergenic 40.0%
AGAAATGTGGCAAAGAGAGA+TGG - chr3_3:61969023-61969042 Msa0462780:intron 40.0%
TCAGGAAATGTTTGCCAAGA+AGG + chr3_3:61969090-61969109 None:intergenic 40.0%
TCTTGGCAAACATTTCCTGA+TGG - chr3_3:61969090-61969109 Msa0462780:intron 40.0%
TCCTGATGGAAAGAAACTTG+AGG - chr3_3:61969104-61969123 Msa0462780:intron 40.0%
ACCTCAAGTTTCTTTCCATC+AGG + chr3_3:61969108-61969127 None:intergenic 40.0%
TCTAATACGGTTCATTCTGC+AGG - chr3_3:61969202-61969221 Msa0462780:intron 40.0%
GTTGATGCAAATATCTGTCC+TGG + chr3_3:61969243-61969262 None:intergenic 40.0%
CATGTTATCGAGTTTGCGAA+GGG + chr3_3:61969273-61969292 None:intergenic 40.0%
!! GGCACAATAGTAGTTCTAGT+CGG - chr3_3:61969325-61969344 Msa0462780:CDS 40.0%
!! CTGAATTGACTTGCGAAAAG+AGG + chr3_3:61969492-61969511 None:intergenic 40.0%
! CTTTTCGCAAGTCAATTCAG+CGG - chr3_3:61969492-61969511 Msa0462780:intron 40.0%
GTCTATCAACAGCATTGCTT+TGG - chr3_3:61969634-61969653 Msa0462780:intron 40.0%
GGAAGTTCCTGAGTCATATT+TGG - chr3_3:61969664-61969683 Msa0462780:intron 40.0%
AGGGTTTCCAAATATGACTC+AGG + chr3_3:61969674-61969693 None:intergenic 40.0%
ATGTTAGAAGTGAGACCTTG+GGG + chr3_3:61969697-61969716 None:intergenic 40.0%
CTGTATGATGCAATTACTGC+AGG - chr3_3:61969904-61969923 Msa0462780:intron 40.0%
ACTGGAGAATATTTCACAGG+AGG + chr3_3:61970070-61970089 None:intergenic 40.0%
CACATCAGATCAATTCTCCT+CGG - chr3_3:61970199-61970218 Msa0462780:CDS 40.0%
GTGCAATATGTTCAGAAGAG+AGG + chr3_3:61970247-61970266 None:intergenic 40.0%
GACTTTGTAGTTGAACGGTT+GGG + chr3_3:61970344-61970363 None:intergenic 40.0%
AGACTTTGTAGTTGAACGGT+TGG + chr3_3:61970345-61970364 None:intergenic 40.0%
CAACTACAAAGTCTTCATGG+GGG - chr3_3:61970351-61970370 Msa0462780:intron 40.0%
GTTAAGGACTTCATGCTTGA+TGG - chr3_3:61970377-61970396 Msa0462780:intron 40.0%
! AGGTAGTTTGAGTTAAGCCA+GGG + chr3_3:61970466-61970485 None:intergenic 40.0%
! AAGGTAGTTTGAGTTAAGCC+AGG + chr3_3:61970467-61970486 None:intergenic 40.0%
TGGCTTAACTCAAACTACCT+TGG - chr3_3:61970466-61970485 Msa0462780:intron 40.0%
GAATTGGAACCTTGTTGCAT+TGG + chr3_3:61970505-61970524 None:intergenic 40.0%
!! TTTGCATTGGTTCCTACAAC+GGG - chr3_3:61970726-61970745 Msa0462780:CDS 40.0%
CCTCTTACAGGACTAATCAA+TGG + chr3_3:61970852-61970871 None:intergenic 40.0%
! CCATTGATTAGTCCTGTAAG+AGG - chr3_3:61970849-61970868 Msa0462780:CDS 40.0%
! TTGTTGTTGTTGTGGAGGAA+AGG + chr3_3:61970885-61970904 None:intergenic 40.0%
! TGTTGTTGTTGTTGTTGTGG+AGG + chr3_3:61970890-61970909 None:intergenic 40.0%
CCGAATTTCACAGCATTTAG+AGG + chr3_3:61971065-61971084 None:intergenic 40.0%
! GTTGTGATGATGAAGACGTG+TGG + chr3_3:61967275-61967294 None:intergenic 45.0%
CAAATGGTACTCCTCTTGGT+TGG - chr3_3:61967600-61967619 Msa0462780:CDS 45.0%
TTGAGAATAGGCCAACCAAG+AGG + chr3_3:61967614-61967633 None:intergenic 45.0%
! AGAACAAGAACGCTTTGAGC+TGG + chr3_3:61967648-61967667 None:intergenic 45.0%
GGTGAAGATATGTCAGGTTC+AGG - chr3_3:61968144-61968163 Msa0462780:CDS 45.0%
AAAAGGGGTTTGCACTGCTT+TGG - chr3_3:61968167-61968186 Msa0462780:CDS 45.0%
TCCACTAGTATTGTGACACG+TGG - chr3_3:61968617-61968636 Msa0462780:intron 45.0%
!! TGTCTAGGATGGTATTGGTG+TGG - chr3_3:61968656-61968675 Msa0462780:intron 45.0%
GGCATGTGTCTCGATACTAT+TGG - chr3_3:61968677-61968696 Msa0462780:intron 45.0%
CTACTGCATTTGGGCAACTT+TGG - chr3_3:61968971-61968990 Msa0462780:CDS 45.0%
TGTGGCAAAGAGAGATGGAA+TGG - chr3_3:61969028-61969047 Msa0462780:intron 45.0%
! TTCTGCAGGTAATGACTTGC+AGG - chr3_3:61969216-61969235 Msa0462780:intron 45.0%
GCATGTTATCGAGTTTGCGA+AGG + chr3_3:61969274-61969293 None:intergenic 45.0%
!! ATTGTAGCCGCTGATTCAGA+AGG - chr3_3:61969461-61969480 Msa0462780:intron 45.0%
CAGCATTGCTTTGGCTGAAA+TGG - chr3_3:61969643-61969662 Msa0462780:intron 45.0%
ATATTTGGAAACCCTCCCCA+AGG - chr3_3:61969679-61969698 Msa0462780:intron 45.0%
CAGAATGGAAGAACTTGCCT+CGG - chr3_3:61970155-61970174 Msa0462780:intron 45.0%
GATAAATAGCAGCTTCCACG+CGG + chr3_3:61970283-61970302 None:intergenic 45.0%
GTAGTTGAACGGTTGGGATT+AGG + chr3_3:61970338-61970357 None:intergenic 45.0%
TACAAAGTCTTCATGGGGGA+TGG - chr3_3:61970355-61970374 Msa0462780:intron 45.0%
TTGGATCTTGCTGGTATCCA+AGG + chr3_3:61970486-61970505 None:intergenic 45.0%
CTTGTTGCATTGGATCTTGC+TGG + chr3_3:61970495-61970514 None:intergenic 45.0%
CAGCAAGATCCAATGCAACA+AGG - chr3_3:61970493-61970512 Msa0462780:intron 45.0%
!!! CTCTAGAGTTTTGGAGAGCA+TGG - chr3_3:61970635-61970654 Msa0462780:intron 45.0%
GAAACCACATTACCCGTTGT+AGG + chr3_3:61970741-61970760 None:intergenic 45.0%
CCTGAGACAGACACTGAAAA+TGG + chr3_3:61970780-61970799 None:intergenic 45.0%
! CCATTTTCAGTGTCTGTCTC+AGG - chr3_3:61970777-61970796 Msa0462780:CDS 45.0%
ACTCCACACAAAGCAGCATT+CGG - chr3_3:61970801-61970820 Msa0462780:CDS 45.0%
GGACTAATCAATGGCACAGA+AGG + chr3_3:61970843-61970862 None:intergenic 45.0%
GACATGTGGCAATTCAACTG+AGG - chr3_3:61971001-61971020 Msa0462780:five_prime_UTR 45.0%
GGCAATTCAACTGAGGTCAA+TGG - chr3_3:61971008-61971027 Msa0462780:five_prime_UTR 45.0%
AGACTGACACCTCTGATCGA+AGG - chr3_3:61967786-61967805 Msa0462780:CDS 50.0%
GCCACGTGTCACAATACTAG+TGG + chr3_3:61968621-61968640 None:intergenic 50.0%
TTATCGAGTTTGCGAAGGGC+TGG + chr3_3:61969269-61969288 None:intergenic 50.0%
!! AGCCGCTGATTCAGAAGGTT+CGG - chr3_3:61969466-61969485 Msa0462780:intron 50.0%
TTCAGCGGCAAGAAGAGAAG+TGG - chr3_3:61969507-61969526 Msa0462780:intron 50.0%
TTCTCACTGAGACCTGCTTC+GGG + chr3_3:61969554-61969573 None:intergenic 50.0%
CTTCTCACTGAGACCTGCTT+CGG + chr3_3:61969555-61969574 None:intergenic 50.0%
TAGAAGTGAGACCTTGGGGA+GGG + chr3_3:61969693-61969712 None:intergenic 50.0%
TTAGAAGTGAGACCTTGGGG+AGG + chr3_3:61969694-61969713 None:intergenic 50.0%
ACAATCAAGTAGGCACTCCG+AGG + chr3_3:61970219-61970238 None:intergenic 50.0%
GTCTTCATGGGGGATGGTTA+AGG - chr3_3:61970361-61970380 Msa0462780:intron 50.0%
GGTTCCTACAACGGGTAATG+TGG - chr3_3:61970734-61970753 Msa0462780:CDS 50.0%
GGCACAGAAGGCGAAAACTT+AGG + chr3_3:61970831-61970850 None:intergenic 50.0%
CCAGACACACCTTCGATCAG+AGG + chr3_3:61967798-61967817 None:intergenic 55.0%
! CCTCTGATCGAAGGTGTGTC+TGG - chr3_3:61967795-61967814 Msa0462780:intron 55.0%
! AGGTAATGACTTGCAGGCCC+AGG - chr3_3:61969222-61969241 Msa0462780:intron 55.0%
GGCCGAACCTTCTGAATCAG+CGG + chr3_3:61969471-61969490 None:intergenic 55.0%
AGCGGCAAGAAGAGAAGTGG+TGG - chr3_3:61969510-61969529 Msa0462780:intron 55.0%
TGAGACCTGCTTCGGGAACA+CGG + chr3_3:61969547-61969566 None:intergenic 55.0%
ACTCGAGATTGCAAACCGCG+TGG - chr3_3:61970265-61970284 Msa0462780:CDS 55.0%
TGGGATTAGGCGTGGATCTG+TGG + chr3_3:61970325-61970344 None:intergenic 55.0%
TGAACGGTTGGGATTAGGCG+TGG + chr3_3:61970333-61970352 None:intergenic 55.0%
!! TCCTTGAAGCATCGGTTCCC+TGG - chr3_3:61970446-61970465 Msa0462780:intron 55.0%
!! GTGCCGAATGCTGCTTTGTG+TGG + chr3_3:61970807-61970826 None:intergenic 55.0%
GGAGTTCTCTCCCCTCTTAC+AGG + chr3_3:61970864-61970883 None:intergenic 55.0%
AACGTCAAACCTCAGCGTCG+CGG - chr3_3:61970924-61970943 Msa0462780:CDS 55.0%
CGAGTTTGCGAAGGGCTGGA+AGG + chr3_3:61969265-61969284 None:intergenic 60.0%
TGCTTCGGGAACACGGGGAA+CGG + chr3_3:61969540-61969559 None:intergenic 60.0%
AGACCTGCTTCGGGAACACG+GGG + chr3_3:61969545-61969564 None:intergenic 60.0%
GAGACCTGCTTCGGGAACAC+GGG + chr3_3:61969546-61969565 None:intergenic 60.0%
CGCGCGCTTGCAGAGAATGT+AGG + chr3_3:61970005-61970024 None:intergenic 60.0%
GCCAGGGAACCGATGCTTCA+AGG + chr3_3:61970450-61970469 None:intergenic 60.0%
AAACCTCAGCGTCGCGGCTT+TGG - chr3_3:61970930-61970949 Msa0462780:CDS 60.0%
CTTCGGGAACACGGGGAACG+GGG + chr3_3:61969538-61969557 None:intergenic 65.0%
GCTTCGGGAACACGGGGAAC+GGG + chr3_3:61969539-61969558 None:intergenic 65.0%
GTTCCCCGTGTTCCCGAAGC+AGG - chr3_3:61969539-61969558 Msa0462780:intron 65.0%
ACACCAAAGCCGCGACGCTG+AGG + chr3_3:61970936-61970955 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 61967140 61971275 61967140 ID=Msa0462780;Name=Msa0462780
chr3_3 mRNA 61967140 61971275 61967140 ID=Msa0462780-mRNA-1;Parent=Msa0462780;Name=Msa0462780-mRNA-1;_AED=0.08;_eAED=0.08;_QI=303|1|1|1|1|1|7|187|594
chr3_3 exon 61967140 61967809 61967140 ID=Msa0462780-mRNA-1:exon:13195;Parent=Msa0462780-mRNA-1
chr3_3 exon 61967901 61968257 61967901 ID=Msa0462780-mRNA-1:exon:13194;Parent=Msa0462780-mRNA-1
chr3_3 exon 61968715 61969005 61968715 ID=Msa0462780-mRNA-1:exon:13193;Parent=Msa0462780-mRNA-1
chr3_3 exon 61969117 61969191 61969117 ID=Msa0462780-mRNA-1:exon:13192;Parent=Msa0462780-mRNA-1
chr3_3 exon 61969290 61969444 61969290 ID=Msa0462780-mRNA-1:exon:13191;Parent=Msa0462780-mRNA-1
chr3_3 exon 61970196 61970312 61970196 ID=Msa0462780-mRNA-1:exon:13190;Parent=Msa0462780-mRNA-1
chr3_3 exon 61970666 61971275 61970666 ID=Msa0462780-mRNA-1:exon:13189;Parent=Msa0462780-mRNA-1
chr3_3 five_prime_UTR 61970973 61971275 61970973 ID=Msa0462780-mRNA-1:five_prime_utr;Parent=Msa0462780-mRNA-1
chr3_3 CDS 61970666 61970972 61970666 ID=Msa0462780-mRNA-1:cds;Parent=Msa0462780-mRNA-1
chr3_3 CDS 61970196 61970312 61970196 ID=Msa0462780-mRNA-1:cds;Parent=Msa0462780-mRNA-1
chr3_3 CDS 61969290 61969444 61969290 ID=Msa0462780-mRNA-1:cds;Parent=Msa0462780-mRNA-1
chr3_3 CDS 61969117 61969191 61969117 ID=Msa0462780-mRNA-1:cds;Parent=Msa0462780-mRNA-1
chr3_3 CDS 61968715 61969005 61968715 ID=Msa0462780-mRNA-1:cds;Parent=Msa0462780-mRNA-1
chr3_3 CDS 61967901 61968257 61967901 ID=Msa0462780-mRNA-1:cds;Parent=Msa0462780-mRNA-1
chr3_3 CDS 61967327 61967809 61967327 ID=Msa0462780-mRNA-1:cds;Parent=Msa0462780-mRNA-1
chr3_3 three_prime_UTR 61967140 61967326 61967140 ID=Msa0462780-mRNA-1:three_prime_utr;Parent=Msa0462780-mRNA-1
Gene Sequence

>Msa0462780

ATGGAAACTTTATCTAAAAACAACGAAAAATCTCAAAAGAAAAAAGATGGGTCTCGTTCTTCTTGTGTCACTGATTCAAGTGTAGAGTCTAGAACTACAAGTTTCAGTGGATCTAATTCAACCTCGTCAATTTCTACTTCAGAAGTTGAAGCTAAATCAAATGGTACTCCTCTTGGTTGGCCTATTCTCAAAGCTACACTTTCCAGCTCAAAGCGTTCTTGTTCTTCTGATGACAAAGAAAACAAACACAAATCAAACTTGGAAGTGGAACGCACAAAATGTACAACTATGGATGTAAAAGTGTCAGATGTTGATATGATGAAGGAAAGATTTGCAAAATTGTTGCTAGGTGAAGATATGTCAGGTTCAGGAAAAGGGGTTTGCACTGCTTTGGCAATATCTAATGCCATTACTAATCTTTGTGCTACTGCATTTGGGCAACTTTGGAGACTAGAACCACTACCTTGTGAGAAGAAAGAAATGTGGCAAAGAGAGATGGAATGGCTTGTTAGTGTCAGTGATCACATTGTTGAATTAATACCTTCTTGGCAAACATTTCCTGATGGAAAGAAACTTGAGGTAATGACTTGCAGGCCCAGGACAGATATTTGCATCAACCTTCCAGCCCTTCGCAAACTCGATAACATGCTACTCGAAATATTAGACAGTTTCACAGCTACAGAATTTTGGTATGTTGATCAAGGAATTGTAGCCGCTGATTCAGAAGGTTCGGCCTCTTTTCGCAAGTCAATTCAGCGGCAAGAAGAGAAGTGGTGGCTCCCCGTTCCCCGTGTTCCCGAAGCAGGTCTCAGTGAGAAGTCAAGAAAGAAGTTGAATCACTCTAGAGAAAGTGCAAGTCAAATTCTCAAAGCAGCTATGTCTATCAACAGCATTGCTTTGGCTGAAATGGAAGTTCCTGAGTCATATTTGGAAACCCTCCCCAAGAATGGAAGAACTTGCCTCGGAGATTTTATTTACCGATACATCACATCAGATCAATTCTCCTCGGAGTGCCTACTTGATTGTTTAGACCTCTCTTCTGAACATATTGCACTCGAGATTGCAAACCGCGTGGAAGCTGCTATTTATCTATGGCGTCGAAGATCTAACCACAGATCCACGCCTAATCCCAACCGTTCAACTACAAAGTCTTCATGGGGGATGGTTAAGGACTTCATGCTTGATGGAGATAAGAGAGAATTGCTAGCACATAGAGCTGAAAACATTCTAAGTTCCTTGAAGCATCGGTTCCCTGGCTTAACTCAAACTACCTTGGATACCAGCAAGATCCAATGCAACAAGGATGTTGGAAAATCTATTCTAGAAAGCTACTCTAGAGTTTTGGAGAGCATGGCTTATAACATTATATCACGCATTGATGATTTGTTATACGTGGATGAGTTAACAAAACATTCAGACAGATTTGCATTGGTTCCTACAACGGGTAATGTGGTTTCTCAGCAGATTTTGCGTCCATTTTCAGTGTCTGTCTCAGGCACTCCACACAAAGCAGCATTCGGCACGCCTAAGTTTTCGCCTTCTGTGCCATTGATTAGTCCTGTAAGAGGGGAGAGAACTCCTTTCCTCCACAACAACAACAACAACAACAACAATGTCAACAACGTCAAACCTCAGCGTCGCGGCTTTGGTGTGAGAAGAGCTTTGTCAAATTATCTTGGTGTTGAGACTAAAACAAAGACATGTGGCAATTCAACTGAGGTCAATGGTTCAAACCCAAGTAACAAGAAAACAGAACAACCTCTAAATGCTGTGAAATTCGGTTGA

Protein sequence

>Msa0462780

METLSKNNEKSQKKKDGSRSSCVTDSSVESRTTSFSGSNSTSSISTSEVEAKSNGTPLGWPILKATLSSSKRSCSSDDKENKHKSNLEVERTKCTTMDVKVSDVDMMKERFAKLLLGEDMSGSGKGVCTALAISNAITNLCATAFGQLWRLEPLPCEKKEMWQREMEWLVSVSDHIVELIPSWQTFPDGKKLEVMTCRPRTDICINLPALRKLDNMLLEILDSFTATEFWYVDQGIVAADSEGSASFRKSIQRQEEKWWLPVPRVPEAGLSEKSRKKLNHSRESASQILKAAMSINSIALAEMEVPESYLETLPKNGRTCLGDFIYRYITSDQFSSECLLDCLDLSSEHIALEIANRVEAAIYLWRRRSNHRSTPNPNRSTTKSSWGMVKDFMLDGDKRELLAHRAENILSSLKHRFPGLTQTTLDTSKIQCNKDVGKSILESYSRVLESMAYNIISRIDDLLYVDELTKHSDRFALVPTTGNVVSQQILRPFSVSVSGTPHKAAFGTPKFSPSVPLISPVRGERTPFLHNNNNNNNNVNNVKPQRRGFGVRRALSNYLGVETKTKTCGNSTEVNGSNPSNKKTEQPLNAVKFG*