AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0536780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0536780 MtrunA17_Chr4g0011001 98.294 293 5 0 1 293 1 293 0.0 600
Msa0536780 MtrunA17_Chr7g0276121 51.667 300 138 3 11 303 7 306 2.12e-90 271
Msa0536780 MtrunA17_Chr4g0009911 32.083 240 141 5 54 282 45 273 6.15e-34 125
Msa0536780 MtrunA17_Chr1g0199411 30.682 264 153 5 28 279 12 257 1.11e-27 108
Msa0536780 MtrunA17_Chr1g0201631 27.365 296 189 9 24 301 30 317 1.38e-27 110
Msa0536780 MtrunA17_Chr6g0464751 29.893 281 153 12 49 303 58 320 3.74e-25 104
Msa0536780 MtrunA17_Chr3g0131931 31.188 202 114 6 85 268 103 297 1.66e-22 96.7
Msa0536780 MtrunA17_Chr6g0462021 29.537 281 156 11 13 270 37 298 1.68e-22 97.1
Msa0536780 MtrunA17_Chr7g0251761 29.044 272 165 9 13 268 37 296 3.97e-18 84.3
Msa0536780 MtrunA17_Chr7g0255161 27.083 240 125 10 64 267 15 240 9.84e-17 79.7
Msa0536780 MtrunA17_Chr7g0255151 27.670 206 112 7 85 267 111 302 2.57e-16 79.0
Msa0536780 MtrunA17_Chr7g0273371 25.670 261 143 8 25 258 79 315 1.49e-15 76.6
Msa0536780 MtrunA17_Chr1g0163561 31.351 185 96 6 3 185 56 211 2.50e-15 75.5
Msa0536780 MtrunA17_Chr4g0037991 29.515 227 120 10 20 233 88 287 8.31e-15 73.9
Msa0536780 MtrunA17_Chr4g0049351 29.018 224 130 9 85 292 325 535 1.89e-14 73.6
Msa0536780 MtrunA17_Chr4g0064931 27.000 300 174 13 21 293 281 562 2.13e-14 73.6
Msa0536780 MtrunA17_Chr1g0211241 26.214 309 167 13 15 300 363 633 6.00e-14 72.4
Msa0536780 MtrunA17_Chr1g0211231 26.603 312 160 15 6 304 288 543 2.81e-12 67.0
Msa0536780 MtrunA17_Chr1g0193941 27.389 157 100 4 45 198 84 229 5.15e-12 66.2
Msa0536780 MtrunA17_Chr5g0406311 29.947 187 110 7 120 300 163 334 5.13e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0536780 AT3G60800.1 84.039 307 47 1 1 305 1 307 0.0 521
Msa0536780 AT4G22750.1 66.000 300 97 3 8 305 1 297 9.99e-131 374
Msa0536780 AT4G00840.1 54.730 296 124 4 11 303 2 290 1.33e-104 307
Msa0536780 AT4G00840.2 55.769 208 82 4 11 215 2 202 1.32e-62 197
Msa0536780 AT5G04270.1 32.624 282 149 8 18 283 2 258 1.23e-32 122
Msa0536780 AT3G09320.1 34.307 274 150 11 20 279 4 261 2.95e-32 121
Msa0536780 AT3G26935.1 28.470 281 170 9 24 288 44 309 3.24e-25 105
Msa0536780 AT4G24630.1 28.464 267 167 8 24 273 29 288 8.15e-25 103
Msa0536780 AT5G41060.2 27.007 274 166 10 13 268 21 278 5.34e-23 98.2
Msa0536780 AT5G41060.1 27.007 274 166 10 13 268 36 293 7.03e-23 98.2
Msa0536780 AT5G41060.3 28.384 229 134 8 57 268 11 226 3.57e-22 95.1
Msa0536780 AT5G41060.4 28.384 229 134 8 57 268 11 226 3.57e-22 95.1
Msa0536780 AT5G50020.3 27.341 267 169 8 24 273 29 287 2.46e-21 93.6
Msa0536780 AT5G50020.2 26.667 270 167 9 24 273 59 317 3.14e-21 93.6
Msa0536780 AT5G05070.1 28.070 228 122 8 85 288 118 327 6.58e-18 84.0
Msa0536780 AT3G56920.1 27.542 236 123 10 66 268 64 284 5.84e-17 80.5
Msa0536780 AT3G04970.1 27.059 255 135 9 25 255 79 306 5.93e-17 80.9
Msa0536780 AT3G48760.1 27.317 205 124 6 85 271 110 307 1.59e-16 80.1
Msa0536780 AT5G50020.1 26.217 267 165 9 24 273 29 280 1.98e-16 79.7
Msa0536780 AT3G04970.3 27.642 246 127 9 34 255 1 219 4.16e-16 77.8
Msa0536780 AT2G40990.1 32.278 158 83 6 123 268 158 303 5.07e-16 78.2
Msa0536780 AT3G04970.2 27.016 248 130 8 25 245 79 302 1.31e-15 76.3
Msa0536780 AT5G20350.1 25.649 308 185 13 21 304 276 563 1.42e-15 77.4
Msa0536780 AT3G56930.1 26.601 203 126 5 85 268 94 292 1.83e-15 77.0
Msa0536780 AT3G18620.1 54.386 57 26 0 126 182 149 205 3.50e-15 75.5
Msa0536780 AT2G14255.1 31.343 201 115 8 72 260 314 503 3.81e-15 76.3
Msa0536780 AT4G01730.1 27.513 189 118 4 67 242 105 287 1.02e-12 68.9
Msa0536780 AT3G51390.1 32.143 140 89 3 127 266 164 297 8.86e-11 62.4
Msa0536780 AT3G51390.2 32.143 140 89 3 127 266 159 292 8.99e-11 62.4

Find 114 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTAGGGTTTATTGAGAATT+TGG 0.109054 4_1:-14070897 None:intergenic
ATCCGGCTTGTAAGTAATTC+TGG 0.174428 4_1:+14076395 Msa0536780:three_prime_UTR
CCAAGATCATAACGCCATTT+TGG 0.205394 4_1:-14074593 None:intergenic
CTAGGGTTTATTGAGAATTT+GGG 0.240991 4_1:-14070896 None:intergenic
GGAACAAATCTAACATTATA+AGG 0.245071 4_1:-14076559 None:intergenic
CAGTTTGGAGGTACACTTCC+AGG 0.285240 4_1:-14073065 None:intergenic
TTAAACCAAATATGCCCTTA+TGG 0.302319 4_1:-14076084 None:intergenic
TGATTCTCTTATTGCTGTCT+TGG 0.311178 4_1:+14071249 Msa0536780:CDS
TTTGATCTTGTTTCATGCTT+TGG 0.318169 4_1:+14071273 Msa0536780:CDS
TATGTTCCTTCTTTGTATAA+TGG 0.318990 4_1:+14071220 Msa0536780:CDS
CCTCTCTCCTCATCAATTGT+AGG 0.323601 4_1:-14073092 None:intergenic
CCAAAATGGCGTTATGATCT+TGG 0.333453 4_1:+14074593 Msa0536780:CDS
GTCATGGGTTTGGTGAATCT+AGG 0.337349 4_1:-14070914 None:intergenic
TGAAGAGAATTGCAATGCTT+TGG 0.342436 4_1:-14076581 None:intergenic
TACCGGATCCGTTGATTAGA+TGG 0.344373 4_1:-14073164 None:intergenic
ATACAAAGAAGGAACATAAT+TGG 0.344556 4_1:-14071215 None:intergenic
ATTGAGATCGAAGTGGGTTT+TGG 0.345179 4_1:+14071047 Msa0536780:five_prime_UTR
GCAAGAGAGCTAGGTGTTCC+AGG 0.359082 4_1:-14073757 None:intergenic
TCTGATTATGCACATATCAT+TGG 0.372598 4_1:+14073912 Msa0536780:CDS
GAAGAGAATTGCAATGCTTT+GGG 0.376308 4_1:-14076580 None:intergenic
TGTGGGTAGTTAACTGTGTT+GGG 0.376839 4_1:+14073369 Msa0536780:CDS
AGAAGAAAACTACTCCAAAA+TGG 0.382057 4_1:+14074579 Msa0536780:CDS
TTGTTGGTTCTTGGTGTTGT+TGG 0.390832 4_1:+14071166 Msa0536780:CDS
TGTATGAGTGAGAAAGTAAA+GGG 0.400983 4_1:-14076371 None:intergenic
GGAGAGGAAGATCCATTAGT+TGG 0.403198 4_1:+14073113 Msa0536780:CDS
CTTTCTCACTCATACAAATC+CGG 0.412453 4_1:+14076378 Msa0536780:three_prime_UTR
GGCATCGAGGCGGCTTGAGC+TGG 0.413050 4_1:-14073202 None:intergenic
AGCTCCGAGGTTGTTCTTGT+CGG 0.414652 4_1:+14070954 Msa0536780:five_prime_UTR
TGATTGATTATGCATAGATC+TGG 0.415700 4_1:+14071076 Msa0536780:exon
TCATGGGTTTGGTGAATCTA+GGG 0.417197 4_1:-14070913 None:intergenic
CGCTTTCGCATTGAGTGTGA+TGG 0.421207 4_1:+14073885 Msa0536780:CDS
AATTGATGATTCTGCTTTGT+GGG 0.422280 4_1:+14070990 Msa0536780:five_prime_UTR
TCAATTGTAGGCCTCCAGTT+TGG 0.424125 4_1:-14073080 None:intergenic
ACCTGAAACAGAGTGAAAAC+CGG 0.429843 4_1:-14076155 None:intergenic
TTCATTGACTAACAACTCAT+TGG 0.431744 4_1:-14076699 None:intergenic
CTGGAAGTGTACCTCCAAAC+TGG 0.434261 4_1:+14073066 Msa0536780:CDS
ATGATGTGTACACTTCTGTT+TGG 0.440503 4_1:-14076321 None:intergenic
TTCCTTCTTTGTATAATGGA+GGG 0.446114 4_1:+14071224 Msa0536780:CDS
CTGAACTCTAACCCAACTAA+TGG 0.447036 4_1:-14073125 None:intergenic
GTGCATGTGTTAAGTTGAAA+TGG 0.449179 4_1:+14076477 Msa0536780:three_prime_UTR
GTGTGGGTAGTTAACTGTGT+TGG 0.451518 4_1:+14073368 Msa0536780:CDS
GTTCCTTCTTTGTATAATGG+AGG 0.453444 4_1:+14071223 Msa0536780:CDS
TCCGGCTTGTAAGTAATTCT+GGG 0.456621 4_1:+14076396 Msa0536780:three_prime_UTR
AAATTGATGATTCTGCTTTG+TGG 0.456748 4_1:+14070989 Msa0536780:five_prime_UTR
TTCATAGCATTCTTTAGTGA+TGG 0.458599 4_1:+14073727 Msa0536780:CDS
GGAAAACTTTACCTCAATAG+TGG 0.459164 4_1:-14073950 None:intergenic
AGCTATTGGGAATCGAAGTC+GGG 0.460014 4_1:-14076055 None:intergenic
TTGGGACGGACAAGAAATAC+TGG 0.473728 4_1:+14075960 Msa0536780:CDS
CAGCTATTGGGAATCGAAGT+CGG 0.479426 4_1:-14076056 None:intergenic
CCTGAAACAGAGTGAAAACC+GGG 0.485054 4_1:-14076154 None:intergenic
GTGTTAGGTTATGGTTTGAG+AGG 0.490604 4_1:+14076521 Msa0536780:three_prime_UTR
GAGAGGAAGATCCATTAGTT+GGG 0.491844 4_1:+14073114 Msa0536780:CDS
AAATGGAGGGAGCAATGAGA+GGG 0.494826 4_1:+14076494 Msa0536780:three_prime_UTR
TGTACACATCATGTAACAAA+AGG 0.494958 4_1:+14076332 Msa0536780:three_prime_UTR
AAAGTTGTAGCAAGAGAGCT+AGG 0.504375 4_1:-14073766 None:intergenic
TTGTATGAGTGAGAAAGTAA+AGG 0.504793 4_1:-14076372 None:intergenic
TACTCGAGACCTTGTAGAGC+TGG 0.507547 4_1:-14076022 None:intergenic
TGCACAGCTTTACGAGGACT+TGG 0.507888 4_1:+14071130 Msa0536780:CDS
CGAAGGATGCCAGCTCTACA+AGG 0.508944 4_1:+14076013 Msa0536780:CDS
ATCCATCTAATCAACGGATC+CGG 0.513865 4_1:+14073162 Msa0536780:CDS
GTTTGTGCAGATGAATTGCT+TGG 0.517980 4_1:-14076421 None:intergenic
GCTTTCGCATTGAGTGTGAT+GGG 0.523751 4_1:+14073886 Msa0536780:CDS
ATATCTTCTTCTGAATAAGC+AGG 0.525822 4_1:-14075989 None:intergenic
AACCCTCCATTATACAAAGA+AGG 0.526029 4_1:-14071226 None:intergenic
GAAATGGAGGGAGCAATGAG+AGG 0.526481 4_1:+14076493 Msa0536780:three_prime_UTR
ACTCACAAACTGAACAATGA+TGG 0.526589 4_1:-14073223 None:intergenic
TTTAGTGATGGAGAAATCCC+TGG 0.528395 4_1:+14073739 Msa0536780:CDS
CTTTGCATTGAGATCGAAGT+GGG 0.532329 4_1:+14071041 Msa0536780:five_prime_UTR
ATTGTAGGCCTCCAGTTTGG+AGG 0.536225 4_1:-14073077 None:intergenic
TTTATTTGCAAAACTGTCCC+CGG 0.537247 4_1:+14076136 Msa0536780:three_prime_UTR
GCAGTAACGATGCAGTCACT+AGG 0.540451 4_1:-14073699 None:intergenic
TGGGCGATGTGTGCTGAAGA+TGG 0.549501 4_1:+14073334 Msa0536780:CDS
GCCCAGAATTACTTACAAGC+CGG 0.551718 4_1:-14076397 None:intergenic
TGCAGTTGGTTATGCTATTG+TGG 0.552325 4_1:+14073015 Msa0536780:intron
ATCAACGGATCCGGTATTGT+AGG 0.557479 4_1:+14073171 Msa0536780:CDS
GGTTGCACTTCCTACAATAC+CGG 0.558949 4_1:-14073181 None:intergenic
ATGGAGGGAGCAATGAGAGG+GGG 0.560870 4_1:+14076496 Msa0536780:three_prime_UTR
TGCTAATACAACCACTATTG+AGG 0.565179 4_1:+14073939 Msa0536780:CDS
AACAGGAGACAGAATTAACA+TGG 0.565999 4_1:+14076231 Msa0536780:three_prime_UTR
GTGTTCATACCAAGAAAAGA+AGG 0.566591 4_1:-14073412 None:intergenic
AATGGAGGGAGCAATGAGAG+GGG 0.568316 4_1:+14076495 Msa0536780:three_prime_UTR
CAAGAGAGCTAGGTGTTCCA+GGG 0.573246 4_1:-14073756 None:intergenic
GATCTGGAGCTACGATGGCA+TGG 0.585026 4_1:+14071092 Msa0536780:CDS
CAGTCACTAGGGACGTCTCA+AGG 0.590525 4_1:-14073687 None:intergenic
TAGGGTTTATTGAGAATTTG+GGG 0.592322 4_1:-14070895 None:intergenic
GCATAGATCTGGAGCTACGA+TGG 0.600274 4_1:+14071087 Msa0536780:CDS
GGCGTTATGATCTTGGTCGT+CGG 0.603365 4_1:+14074600 Msa0536780:CDS
AGTGGAGAAGAAGATTGAAG+TGG 0.604930 4_1:-14070858 None:intergenic
AAGTTCTGCACAGCTTTACG+AGG 0.607927 4_1:+14071124 Msa0536780:CDS
ATTCAGAAGAAGATATTCGA+AGG 0.610112 4_1:+14075996 Msa0536780:CDS
CATGTGTTAAGTTGAAATGG+AGG 0.616401 4_1:+14076480 Msa0536780:three_prime_UTR
CAGTAACGATGCAGTCACTA+GGG 0.618039 4_1:-14073698 None:intergenic
AATTGATGAGGAGAGAGGAG+AGG 0.619514 4_1:+14073097 Msa0536780:CDS
AACACCGACAAGAACAACCT+CGG 0.620932 4_1:-14070958 None:intergenic
AGTTTGGAGGTACACTTCCA+GGG 0.622562 4_1:-14073064 None:intergenic
CTAAAGAATGCTATGAAATG+CGG 0.626695 4_1:-14073721 None:intergenic
CCTACAATTGATGAGGAGAG+AGG 0.629217 4_1:+14073092 Msa0536780:CDS
GTGGGTAGTTAACTGTGTTG+GGG 0.629727 4_1:+14073370 Msa0536780:CDS
ATTGATGATTCTGCTTTGTG+GGG 0.631990 4_1:+14070991 Msa0536780:five_prime_UTR
CTGGAGGCCTACAATTGATG+AGG 0.643127 4_1:+14073085 Msa0536780:CDS
ACAGGAGACAGAATTAACAT+GGG 0.644781 4_1:+14076232 Msa0536780:three_prime_UTR
AGAGTGATCCATCTAATCAA+CGG 0.644934 4_1:+14073156 Msa0536780:CDS
TCACACTCAATGCGAAAGCG+AGG 0.648642 4_1:-14073882 None:intergenic
AGATGGACCACCATTGTGTG+TGG 0.658837 4_1:+14073351 Msa0536780:CDS
AGTTAACTACCCACACACAA+TGG 0.666889 4_1:-14073361 None:intergenic
GAAGTGTACCTCCAAACTGG+AGG 0.685237 4_1:+14073069 Msa0536780:CDS
GAACAATGATGGCATCGAGG+CGG 0.692188 4_1:-14073212 None:intergenic
TAACTACCCACACACAATGG+TGG 0.692891 4_1:-14073358 None:intergenic
ATGTGTTAAGTTGAAATGGA+GGG 0.701506 4_1:+14076481 Msa0536780:three_prime_UTR
CAGGAGACAGAATTAACATG+GGG 0.710211 4_1:+14076233 Msa0536780:three_prime_UTR
GATGGACCACCATTGTGTGT+GGG 0.716633 4_1:+14073352 Msa0536780:CDS
ACTTTGCATTGAGATCGAAG+TGG 0.716971 4_1:+14071040 Msa0536780:five_prime_UTR
ACTGAACAATGATGGCATCG+AGG 0.726860 4_1:-14073215 None:intergenic
CTGAAACAGAGTGAAAACCG+GGG 0.785419 4_1:-14076153 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTTCTTGTTTTATTTA+TGG + chr4_1:14073601-14073620 Msa0536780:intron 10.0%
!!! TGAATTTTGTTTGAAATTAA+TGG + chr4_1:14071509-14071528 Msa0536780:intron 15.0%
!!! TAACCAAGTATTTTTTTTAT+TGG - chr4_1:14073629-14073648 None:intergenic 15.0%
!! CATGAAAAATATTTGATAAA+TGG + chr4_1:14074727-14074746 Msa0536780:intron 15.0%
!!! ATAATTTCATTCAGATTTTT+AGG + chr4_1:14075560-14075579 Msa0536780:intron 15.0%
!!! CATATTGATTTTTGATATAT+GGG + chr4_1:14075666-14075685 Msa0536780:intron 15.0%
!! TATAACATATAAGAATATAC+AGG - chr4_1:14075801-14075820 None:intergenic 15.0%
!!! TTAAATGTTTTTGAAATAGT+TGG + chr4_1:14075873-14075892 Msa0536780:intron 15.0%
!! ATCATAAAAAAAATCATACT+AGG - chr4_1:14076446-14076465 None:intergenic 15.0%
!!! AGAAAATATTTTACAAATAC+TGG - chr4_1:14076644-14076663 None:intergenic 15.0%
!!! ATTTGAATTTGTTAGTGTTT+TGG + chr4_1:14071322-14071341 Msa0536780:intron 20.0%
!! ATAATTAGCGTAAAATAATG+AGG + chr4_1:14071917-14071936 Msa0536780:intron 20.0%
!! AAAAGAACAATTAGTTATCA+CGG + chr4_1:14072042-14072061 Msa0536780:intron 20.0%
!! AGAAAAAGCTAAAATGAAAT+GGG - chr4_1:14072204-14072223 None:intergenic 20.0%
!! AAGAAAAAGCTAAAATGAAA+TGG - chr4_1:14072205-14072224 None:intergenic 20.0%
!!! AACTTGATTTTATTCCTTTT+CGG + chr4_1:14073299-14073318 Msa0536780:intron 20.0%
!! CATTCATAAAAGTAATAACT+GGG - chr4_1:14073462-14073481 None:intergenic 20.0%
!! TCATTCATAAAAGTAATAAC+TGG - chr4_1:14073463-14073482 None:intergenic 20.0%
!! TACAAAAAAGTTCATTTGTA+TGG - chr4_1:14073974-14073993 None:intergenic 20.0%
!!! ATGAACTTTTTTGTATTACT+TGG + chr4_1:14073979-14073998 Msa0536780:intron 20.0%
!!! TGAACTTTTTTGTATTACTT+GGG + chr4_1:14073980-14073999 Msa0536780:intron 20.0%
!! TATATGTTCTCTAATATGTA+TGG + chr4_1:14074685-14074704 Msa0536780:intron 20.0%
!! ATATGTTCTCTAATATGTAT+GGG + chr4_1:14074686-14074705 Msa0536780:intron 20.0%
!!! TCAAATATTTTTCATGAAGT+TGG - chr4_1:14074723-14074742 None:intergenic 20.0%
!!! AGTTTGTTACAAAATCTTAA+AGG + chr4_1:14075025-14075044 Msa0536780:intron 20.0%
!!! GCATATTGATTTTTGATATA+TGG + chr4_1:14075665-14075684 Msa0536780:intron 20.0%
!!! ACTTTATATATCTAGGATAT+GGG - chr4_1:14075824-14075843 None:intergenic 20.0%
!!! TACTTTATATATCTAGGATA+TGG - chr4_1:14075825-14075844 None:intergenic 20.0%
!! TGTTTGTACTTTATATATCT+AGG - chr4_1:14075831-14075850 None:intergenic 20.0%
!!! TTTTTTATGATGTTACTTAG+AGG + chr4_1:14076455-14076474 Msa0536780:three_prime_UTR 20.0%
!!! AATTTGGGGATTTTGATTTT+TGG - chr4_1:14070884-14070903 None:intergenic 25.0%
!!! AATTTTTTTGATTGGGTCAT+GGG - chr4_1:14070932-14070951 None:intergenic 25.0%
!!! GAGCTAGAATTTTTTTGATT+GGG - chr4_1:14070939-14070958 None:intergenic 25.0%
!!! ATTATGATTTTGTTGGTTCT+TGG + chr4_1:14071157-14071176 Msa0536780:CDS 25.0%
! ATACAAAGAAGGAACATAAT+TGG - chr4_1:14071218-14071237 None:intergenic 25.0%
! TATGTTCCTTCTTTGTATAA+TGG + chr4_1:14071220-14071239 Msa0536780:CDS 25.0%
!!! ATCTGTTTTTGATTTGTTTG+AGG + chr4_1:14071362-14071381 Msa0536780:intron 25.0%
! ATTTATAGGGTCTATTTGAT+GGG + chr4_1:14071449-14071468 Msa0536780:intron 25.0%
! CAACTAATAAAAACTTCCAA+CGG - chr4_1:14071550-14071569 None:intergenic 25.0%
!! GTTGGAAGTTTTTATTAGTT+GGG + chr4_1:14071549-14071568 Msa0536780:intron 25.0%
!! TGATCTTGGTAACAAAATAA+TGG + chr4_1:14072146-14072165 Msa0536780:intron 25.0%
!!! TCTTTAAAGTTTTCATTAGC+TGG + chr4_1:14072175-14072194 Msa0536780:intron 25.0%
!!! CTTTAAAGTTTTCATTAGCT+GGG + chr4_1:14072176-14072195 Msa0536780:intron 25.0%
!! ATGTAGAATAATGAAGTGTT+GGG + chr4_1:14072241-14072260 Msa0536780:intron 25.0%
!!! TGAGACTAATTGTCATTTTT+CGG - chr4_1:14072289-14072308 None:intergenic 25.0%
!! AAAAATGACAATTAGTCTCA+AGG + chr4_1:14072289-14072308 Msa0536780:intron 25.0%
! AGGTGTTAAATATCTAATTG+AGG + chr4_1:14072353-14072372 Msa0536780:intron 25.0%
!!! AAAGACTGTTTTTTAAACCT+TGG + chr4_1:14072744-14072763 Msa0536780:intron 25.0%
! AAATGTGACACTACAAAAAA+CGG - chr4_1:14073269-14073288 None:intergenic 25.0%
! CGTTATAGTAATACTGATAT+TGG - chr4_1:14073572-14073591 None:intergenic 25.0%
! GTGCCAATAAAAAAAATACT+TGG + chr4_1:14073623-14073642 Msa0536780:intron 25.0%
! AACAACTTAAACTCAACTTA+GGG - chr4_1:14074361-14074380 None:intergenic 25.0%
! TATGTTCTCTAATATGTATG+GGG + chr4_1:14074687-14074706 Msa0536780:intron 25.0%
! TGTAACAAACTTTCATTCAA+TGG - chr4_1:14075016-14075035 None:intergenic 25.0%
!! AACTGTTATGAATTCAGTTT+TGG + chr4_1:14075100-14075119 Msa0536780:intron 25.0%
! ATCTACAAATTATGACATCT+TGG - chr4_1:14075219-14075238 None:intergenic 25.0%
! ATTAGCTACTTGGATTATTT+AGG - chr4_1:14075249-14075268 None:intergenic 25.0%
!!! TCATCATGCAATTTTATTTG+TGG + chr4_1:14075436-14075455 Msa0536780:intron 25.0%
!!! TTTTATTTGTGGAAAGACAA+TGG + chr4_1:14075447-14075466 Msa0536780:intron 25.0%
! AAGTAAAAACTAGTTCATGT+AGG - chr4_1:14075481-14075500 None:intergenic 25.0%
!! AACCATATTTTATGTTTCCA+TGG + chr4_1:14075698-14075717 Msa0536780:intron 25.0%
! TTCCATGGAAACATAAAATA+TGG - chr4_1:14075703-14075722 None:intergenic 25.0%
!!! AAATATTCCTACTTTTTCCA+TGG - chr4_1:14075718-14075737 None:intergenic 25.0%
! CAACATAAATCAGTATGTAA+GGG - chr4_1:14075921-14075940 None:intergenic 25.0%
!! TTCTTTGATATCAGGTTTTT+GGG + chr4_1:14075942-14075961 Msa0536780:intron 25.0%
!! GTGTACAAATCTTTAAAAAC+AGG + chr4_1:14076214-14076233 Msa0536780:three_prime_UTR 25.0%
! GGAACAAATCTAACATTATA+AGG - chr4_1:14076562-14076581 None:intergenic 25.0%
TAGGGTTTATTGAGAATTTG+GGG - chr4_1:14070898-14070917 None:intergenic 30.0%
CTAGGGTTTATTGAGAATTT+GGG - chr4_1:14070899-14070918 None:intergenic 30.0%
! TCTAGGGTTTATTGAGAATT+TGG - chr4_1:14070900-14070919 None:intergenic 30.0%
!!! GAATTTTTTTGATTGGGTCA+TGG - chr4_1:14070933-14070952 None:intergenic 30.0%
!!! GGAGCTAGAATTTTTTTGAT+TGG - chr4_1:14070940-14070959 None:intergenic 30.0%
! AAATTGATGATTCTGCTTTG+TGG + chr4_1:14070989-14071008 Msa0536780:five_prime_UTR 30.0%
! AATTGATGATTCTGCTTTGT+GGG + chr4_1:14070990-14071009 Msa0536780:five_prime_UTR 30.0%
TGATTGATTATGCATAGATC+TGG + chr4_1:14071076-14071095 Msa0536780:exon 30.0%
! TGGTTCGATTATGATTTTGT+TGG + chr4_1:14071150-14071169 Msa0536780:CDS 30.0%
! TTCCTTCTTTGTATAATGGA+GGG + chr4_1:14071224-14071243 Msa0536780:CDS 30.0%
! TTTGATCTTGTTTCATGCTT+TGG + chr4_1:14071273-14071292 Msa0536780:CDS 30.0%
!! TGATTTGTTTGAGGATGTTT+AGG + chr4_1:14071371-14071390 Msa0536780:intron 30.0%
!! AGAATTTAGCTTGTTGACTT+AGG + chr4_1:14071416-14071435 Msa0536780:intron 30.0%
!! GAATTTAGCTTGTTGACTTA+GGG + chr4_1:14071417-14071436 Msa0536780:intron 30.0%
TAGGGATCATGATGATTTAT+AGG + chr4_1:14071435-14071454 Msa0536780:intron 30.0%
AGGGATCATGATGATTTATA+GGG + chr4_1:14071436-14071455 Msa0536780:intron 30.0%
GATTTATAGGGTCTATTTGA+TGG + chr4_1:14071448-14071467 Msa0536780:intron 30.0%
! CGTTGGAAGTTTTTATTAGT+TGG + chr4_1:14071548-14071567 Msa0536780:intron 30.0%
CAGCAAAAGCTAAAATCAAA+TGG - chr4_1:14071578-14071597 None:intergenic 30.0%
!!! TTGATTTTAGCTTTTGCTGT+CGG + chr4_1:14071579-14071598 Msa0536780:intron 30.0%
TCTTGGAAGTTATCATTAGT+TGG + chr4_1:14071845-14071864 Msa0536780:intron 30.0%
CTTGGAAGTTATCATTAGTT+GGG + chr4_1:14071846-14071865 Msa0536780:intron 30.0%
GTGTTAGATATCTACATTGA+TGG + chr4_1:14071939-14071958 Msa0536780:intron 30.0%
TTAGATATCTACATTGATGG+TGG + chr4_1:14071942-14071961 Msa0536780:intron 30.0%
GATGTAGAATAATGAAGTGT+TGG + chr4_1:14072240-14072259 Msa0536780:intron 30.0%
TGATGTTTATTCGAAAAACG+AGG + chr4_1:14072333-14072352 Msa0536780:intron 30.0%
AAAAGAACAAGTATCTCTGA+CGG + chr4_1:14072388-14072407 Msa0536780:intron 30.0%
AATGCAACTTTAAACCTTGA+CGG - chr4_1:14072520-14072539 None:intergenic 30.0%
!!! ACAGACTGTTTTTTAAACCT+TGG + chr4_1:14072786-14072805 Msa0536780:intron 30.0%
!!! GATTTTTAAAACAACTGCCA+AGG - chr4_1:14072806-14072825 None:intergenic 30.0%
!!! GTTTTAAAAATCCGAGTTAC+TGG + chr4_1:14072814-14072833 Msa0536780:intron 30.0%
AAACTTCAGAAGAAACACTT+AGG - chr4_1:14072865-14072884 None:intergenic 30.0%
TTAATGATGCGTTGTTTATC+TGG + chr4_1:14072946-14072965 Msa0536780:intron 30.0%
! CAAGTATTTCCTTCTTTTCT+TGG + chr4_1:14073403-14073422 Msa0536780:CDS 30.0%
!! TAATTATTTCTGACTTGCGA+TGG + chr4_1:14073488-14073507 Msa0536780:intron 30.0%
! TCGTTTTACTTTAATGTCTC+AGG - chr4_1:14073536-14073555 None:intergenic 30.0%
!! GTAATACTGATATTGGTTCT+TGG - chr4_1:14073565-14073584 None:intergenic 30.0%
CTAAAGAATGCTATGAAATG+CGG - chr4_1:14073724-14073743 None:intergenic 30.0%
TTCATAGCATTCTTTAGTGA+TGG + chr4_1:14073727-14073746 Msa0536780:CDS 30.0%
GATGGAATACAAATCTAGAA+TGG - chr4_1:14073820-14073839 None:intergenic 30.0%
TTGTTACATAAACTCACAGA+TGG - chr4_1:14073838-14073857 None:intergenic 30.0%
GTGAGTTTATGTAACAATGT+TGG + chr4_1:14073841-14073860 Msa0536780:intron 30.0%
TCTGATTATGCACATATCAT+TGG + chr4_1:14073912-14073931 Msa0536780:CDS 30.0%
ACTTATATGATAAGCACTTG+TGG - chr4_1:14074119-14074138 None:intergenic 30.0%
CAACAACTTAAACTCAACTT+AGG - chr4_1:14074362-14074381 None:intergenic 30.0%
! ATATGCTTTTCCATGTTGTA+TGG + chr4_1:14074493-14074512 Msa0536780:intron 30.0%
AAGAAAAAGTCCATACAACA+TGG - chr4_1:14074506-14074525 None:intergenic 30.0%
AGAAGAAAACTACTCCAAAA+TGG + chr4_1:14074579-14074598 Msa0536780:CDS 30.0%
TTAACACAATACAACAAGCA+CGG - chr4_1:14074643-14074662 None:intergenic 30.0%
CTAGATTGTTGACACATAAT+GGG - chr4_1:14074774-14074793 None:intergenic 30.0%
AGTAACTTAAGTATGCATTG+TGG + chr4_1:14074840-14074859 Msa0536780:intron 30.0%
GTAACTTAAGTATGCATTGT+GGG + chr4_1:14074841-14074860 Msa0536780:intron 30.0%
GAAATCTAATAAAAAGCAGC+AGG - chr4_1:14074915-14074934 None:intergenic 30.0%
GGAAGAGAACTAGATATTAT+TGG + chr4_1:14075643-14075662 Msa0536780:intron 30.0%
TATGTTTCCATGGAAAAAGT+AGG + chr4_1:14075708-14075727 Msa0536780:intron 30.0%
GCAACATAAATCAGTATGTA+AGG - chr4_1:14075922-14075941 None:intergenic 30.0%
! TATGTTGCTTCTTTGATATC+AGG + chr4_1:14075934-14075953 Msa0536780:intron 30.0%
! CTTCTTTGATATCAGGTTTT+TGG + chr4_1:14075941-14075960 Msa0536780:intron 30.0%
ATATCTTCTTCTGAATAAGC+AGG - chr4_1:14075992-14076011 None:intergenic 30.0%
ATTCAGAAGAAGATATTCGA+AGG + chr4_1:14075996-14076015 Msa0536780:CDS 30.0%
!! CTTATGGTTTTTCAGCTATT+GGG - chr4_1:14076071-14076090 None:intergenic 30.0%
CAATAGCTGAAAAACCATAA+GGG + chr4_1:14076070-14076089 Msa0536780:exon 30.0%
! AAAAACCATAAGGGCATATT+TGG + chr4_1:14076079-14076098 Msa0536780:three_prime_UTR 30.0%
TTAAACCAAATATGCCCTTA+TGG - chr4_1:14076087-14076106 None:intergenic 30.0%
TGTACACATCATGTAACAAA+AGG + chr4_1:14076332-14076351 Msa0536780:three_prime_UTR 30.0%
TGTATGAGTGAGAAAGTAAA+GGG - chr4_1:14076374-14076393 None:intergenic 30.0%
TTGTATGAGTGAGAAAGTAA+AGG - chr4_1:14076375-14076394 None:intergenic 30.0%
!! ATGTGTTAAGTTGAAATGGA+GGG + chr4_1:14076481-14076500 Msa0536780:three_prime_UTR 30.0%
! TTCATTGACTAACAACTCAT+TGG - chr4_1:14076702-14076721 None:intergenic 30.0%
!! TCAAAAAAATTCTAGCTCCG+AGG + chr4_1:14070941-14070960 Msa0536780:five_prime_UTR 35.0%
! ATTGATGATTCTGCTTTGTG+GGG + chr4_1:14070991-14071010 Msa0536780:five_prime_UTR 35.0%
GTTCCTTCTTTGTATAATGG+AGG + chr4_1:14071223-14071242 Msa0536780:CDS 35.0%
AACCCTCCATTATACAAAGA+AGG - chr4_1:14071229-14071248 None:intergenic 35.0%
TGATTCTCTTATTGCTGTCT+TGG + chr4_1:14071249-14071268 Msa0536780:CDS 35.0%
GAGAATAATGATTGTTCCGT+TGG + chr4_1:14071531-14071550 Msa0536780:intron 35.0%
AAAGTGAGAAGTAGTTGACA+AGG + chr4_1:14071659-14071678 Msa0536780:intron 35.0%
AAAAACGACAAGTAGTTGTC+AGG + chr4_1:14071723-14071742 Msa0536780:intron 35.0%
AAAACGACAAGTAGTTGTCA+GGG + chr4_1:14071724-14071743 Msa0536780:intron 35.0%
! CTCGATCTTGGTAACAATAA+TGG + chr4_1:14071816-14071835 Msa0536780:intron 35.0%
AACAATAATGGTTGCTCTCT+TGG + chr4_1:14071828-14071847 Msa0536780:intron 35.0%
! TTTTTGCCAGATTGTGAATG+CGG + chr4_1:14071888-14071907 Msa0536780:intron 35.0%
AAAATGACAAGTAGTCGTCA+AGG + chr4_1:14072584-14072603 Msa0536780:intron 35.0%
ACATAAAAAACCGTGACATC+TGG + chr4_1:14072707-14072726 Msa0536780:intron 35.0%
TAGTGATTAAACAACGACCA+AGG - chr4_1:14072764-14072783 None:intergenic 35.0%
AGAAACATCTTCCAGTAACT+CGG - chr4_1:14072828-14072847 None:intergenic 35.0%
TTTCCTCTTTATCATGCAGT+TGG + chr4_1:14073001-14073020 Msa0536780:intron 35.0%
TAACCAACTGCATGATAAAG+AGG - chr4_1:14073007-14073026 None:intergenic 35.0%
TCCAGGGTCAATAAAAACTA+CGG - chr4_1:14073051-14073070 None:intergenic 35.0%
AGAGTGATCCATCTAATCAA+CGG + chr4_1:14073156-14073175 Msa0536780:CDS 35.0%
ACTCACAAACTGAACAATGA+TGG - chr4_1:14073226-14073245 None:intergenic 35.0%
!! TTCCTTTTCGGTTTGATATC+AGG + chr4_1:14073311-14073330 Msa0536780:intron 35.0%
!! TTTTCGGTTTGATATCAGGT+GGG + chr4_1:14073315-14073334 Msa0536780:intron 35.0%
GTGTTCATACCAAGAAAAGA+AGG - chr4_1:14073415-14073434 None:intergenic 35.0%
ACTTTAATGTCTCAGGAAGT+CGG - chr4_1:14073529-14073548 None:intergenic 35.0%
! GCTACAACTTTTCTTGCTTT+TGG + chr4_1:14073778-14073797 Msa0536780:CDS 35.0%
!! CAACTTTTCTTGCTTTTGGT+AGG + chr4_1:14073782-14073801 Msa0536780:intron 35.0%
TGCTAATACAACCACTATTG+AGG + chr4_1:14073939-14073958 Msa0536780:CDS 35.0%
GGAAAACTTTACCTCAATAG+TGG - chr4_1:14073953-14073972 None:intergenic 35.0%
CTAAATACTGCCATTCAACA+AGG - chr4_1:14074059-14074078 None:intergenic 35.0%
CTTGTTGAATGGCAGTATTT+AGG + chr4_1:14074057-14074076 Msa0536780:intron 35.0%
TGTACGTTGTTTATGCAAAC+AGG - chr4_1:14074084-14074103 None:intergenic 35.0%
TAAGCTATCTAAGAGAGCTT+AGG - chr4_1:14074214-14074233 None:intergenic 35.0%
AAGCTCTCTTAGATAGCTTA+TGG + chr4_1:14074214-14074233 Msa0536780:intron 35.0%
AGGATACATTTCACTAGTTC+AGG - chr4_1:14074399-14074418 None:intergenic 35.0%
!! GGACTTTTTCTTATGTGAAG+TGG + chr4_1:14074514-14074533 Msa0536780:intron 35.0%
! TCGTCGGAAAAATTTTGAAC+AGG + chr4_1:14074616-14074635 Msa0536780:CDS 35.0%
CCTAGATTGTTGACACATAA+TGG - chr4_1:14074775-14074794 None:intergenic 35.0%
CCATTATGTGTCAACAATCT+AGG + chr4_1:14074772-14074791 Msa0536780:intron 35.0%
AATCTAGGCACTAATGACTA+AGG + chr4_1:14074787-14074806 Msa0536780:intron 35.0%
AATAAAAAGCAGCAGGACAA+GGG - chr4_1:14074908-14074927 None:intergenic 35.0%
TAATAAAAAGCAGCAGGACA+AGG - chr4_1:14074909-14074928 None:intergenic 35.0%
ATAGCAATCCTAAGCTAACT+AGG + chr4_1:14075061-14075080 Msa0536780:intron 35.0%
!!! TTCAGTTTTGGACAGTTACA+AGG + chr4_1:14075112-14075131 Msa0536780:intron 35.0%
TTCAGCAAGTATTAGCTACT+TGG - chr4_1:14075259-14075278 None:intergenic 35.0%
! CATGATGATGTATTAGACAC+TGG - chr4_1:14075424-14075443 None:intergenic 35.0%
TACAGCACAAGTTTACACAT+GGG - chr4_1:14075532-14075551 None:intergenic 35.0%
ATACAGCACAAGTTTACACA+TGG - chr4_1:14075533-14075552 None:intergenic 35.0%
!! TTGATATCAGGTTTTTGGGA+CGG + chr4_1:14075946-14075965 Msa0536780:intron 35.0%
!! CCTTATGGTTTTTCAGCTAT+TGG - chr4_1:14076072-14076091 None:intergenic 35.0%
CCAATAGCTGAAAAACCATA+AGG + chr4_1:14076069-14076088 Msa0536780:exon 35.0%
TTTATTTGCAAAACTGTCCC+CGG + chr4_1:14076136-14076155 Msa0536780:three_prime_UTR 35.0%
AACAGGAGACAGAATTAACA+TGG + chr4_1:14076231-14076250 Msa0536780:three_prime_UTR 35.0%
ACAGGAGACAGAATTAACAT+GGG + chr4_1:14076232-14076251 Msa0536780:three_prime_UTR 35.0%
ATGATGTGTACACTTCTGTT+TGG - chr4_1:14076324-14076343 None:intergenic 35.0%
CTTTCTCACTCATACAAATC+CGG + chr4_1:14076378-14076397 Msa0536780:three_prime_UTR 35.0%
!! GTGCATGTGTTAAGTTGAAA+TGG + chr4_1:14076477-14076496 Msa0536780:three_prime_UTR 35.0%
!! CATGTGTTAAGTTGAAATGG+AGG + chr4_1:14076480-14076499 Msa0536780:three_prime_UTR 35.0%
GAAGAGAATTGCAATGCTTT+GGG - chr4_1:14076583-14076602 None:intergenic 35.0%
TGAAGAGAATTGCAATGCTT+TGG - chr4_1:14076584-14076603 None:intergenic 35.0%
AGTGGAGAAGAAGATTGAAG+TGG - chr4_1:14070861-14070880 None:intergenic 40.0%
!!! GGGGATTTTGATTTTTGGAG+TGG - chr4_1:14070879-14070898 None:intergenic 40.0%
!! TCATGGGTTTGGTGAATCTA+GGG - chr4_1:14070916-14070935 None:intergenic 40.0%
!! TTTTGATTGGGTCATGGGTT+TGG - chr4_1:14070927-14070946 None:intergenic 40.0%
ACTTTGCATTGAGATCGAAG+TGG + chr4_1:14071040-14071059 Msa0536780:five_prime_UTR 40.0%
CTTTGCATTGAGATCGAAGT+GGG + chr4_1:14071041-14071060 Msa0536780:five_prime_UTR 40.0%
!! ATTGAGATCGAAGTGGGTTT+TGG + chr4_1:14071047-14071066 Msa0536780:five_prime_UTR 40.0%
!! TTGTTGGTTCTTGGTGTTGT+TGG + chr4_1:14071166-14071185 Msa0536780:CDS 40.0%
TGGGTTTGAGTGTGATACTA+TGG + chr4_1:14071468-14071487 Msa0536780:intron 40.0%
!! TTAGCTTTTGCTGTCGGATT+TGG + chr4_1:14071585-14071604 Msa0536780:intron 40.0%
! AAAAGTGCGAAGTAGTTGTC+AGG + chr4_1:14071972-14071991 Msa0536780:intron 40.0%
AAAGTGCGAAGTAGTTGTCA+GGG + chr4_1:14071973-14071992 Msa0536780:intron 40.0%
! TTCCACAAAATCAAGCATCG+TGG - chr4_1:14072097-14072116 None:intergenic 40.0%
! GGATGATTTTGTCGTGATCT+TGG + chr4_1:14072132-14072151 Msa0536780:intron 40.0%
TTGGGCATCTTAATTGACGA+TGG + chr4_1:14072259-14072278 Msa0536780:intron 40.0%
AAAATGACAAGTAGCCGTCA+AGG + chr4_1:14072503-14072522 Msa0536780:intron 40.0%
AACATCTGTATGAGCTTGTG+TGG - chr4_1:14072890-14072909 None:intergenic 40.0%
TGCAGTTGGTTATGCTATTG+TGG + chr4_1:14073015-14073034 Msa0536780:intron 40.0%
! TCCGTAGTTTTTATTGACCC+TGG + chr4_1:14073047-14073066 Msa0536780:CDS 40.0%
GAGAGGAAGATCCATTAGTT+GGG + chr4_1:14073114-14073133 Msa0536780:CDS 40.0%
CTGAACTCTAACCCAACTAA+TGG - chr4_1:14073128-14073147 None:intergenic 40.0%
ATCCATCTAATCAACGGATC+CGG + chr4_1:14073162-14073181 Msa0536780:CDS 40.0%
CACCTGATATCAAACCGAAA+AGG - chr4_1:14073316-14073335 None:intergenic 40.0%
!! CTTTTCGGTTTGATATCAGG+TGG + chr4_1:14073314-14073333 Msa0536780:intron 40.0%
AGTTAACTACCCACACACAA+TGG - chr4_1:14073364-14073383 None:intergenic 40.0%
TGTGGGTAGTTAACTGTGTT+GGG + chr4_1:14073369-14073388 Msa0536780:CDS 40.0%
! TTTAGTGATGGAGAAATCCC+TGG + chr4_1:14073739-14073758 Msa0536780:CDS 40.0%
AAAGTTGTAGCAAGAGAGCT+AGG - chr4_1:14073769-14073788 None:intergenic 40.0%
TGGAAGTTGGATAAGGTGTA+GGG - chr4_1:14074016-14074035 None:intergenic 40.0%
AGCAAAACAGTTTCTTCAGG+TGG - chr4_1:14074036-14074055 None:intergenic 40.0%
AGGAGCAAAACAGTTTCTTC+AGG - chr4_1:14074039-14074058 None:intergenic 40.0%
! CTGTTTTGCTCCTTGTTGAA+TGG + chr4_1:14074046-14074065 Msa0536780:intron 40.0%
AACTCAACTTAGGGACTGTT+TGG - chr4_1:14074352-14074371 None:intergenic 40.0%
AAATGTATCCTCTGTCACTG+AGG + chr4_1:14074408-14074427 Msa0536780:intron 40.0%
GTGAAGTGGATACTGATCAA+TGG + chr4_1:14074528-14074547 Msa0536780:intron 40.0%
! CCAAGATCATAACGCCATTT+TGG - chr4_1:14074596-14074615 None:intergenic 40.0%
CCAAAATGGCGTTATGATCT+TGG + chr4_1:14074593-14074612 Msa0536780:CDS 40.0%
GCACTAATGACTAAGGAAAC+TGG + chr4_1:14074794-14074813 Msa0536780:intron 40.0%
GCATTGTGGGAAACAAAACT+TGG + chr4_1:14074854-14074873 Msa0536780:intron 40.0%
! TGACAGAACCTAGTTAGCTT+AGG - chr4_1:14075072-14075091 None:intergenic 40.0%
GAAATGTCCAGTGTATGTTC+AGG + chr4_1:14075276-14075295 Msa0536780:intron 40.0%
GAAACTTCCTGAACATACAC+TGG - chr4_1:14075286-14075305 None:intergenic 40.0%
! TACTTGTGTCACTGTCAACT+CGG - chr4_1:14075352-14075371 None:intergenic 40.0%
TGACACAGACACATGTCATT+CGG - chr4_1:14075392-14075411 None:intergenic 40.0%
ACAGCACAAGTTTACACATG+GGG - chr4_1:14075531-14075550 None:intergenic 40.0%
TGACTCGATGTCTCTATGTT+AGG + chr4_1:14075622-14075641 Msa0536780:intron 40.0%
ACCTGAAACAGAGTGAAAAC+CGG - chr4_1:14076158-14076177 None:intergenic 40.0%
CAGGAGACAGAATTAACATG+GGG + chr4_1:14076233-14076252 Msa0536780:three_prime_UTR 40.0%
! ATCCGGCTTGTAAGTAATTC+TGG + chr4_1:14076395-14076414 Msa0536780:three_prime_UTR 40.0%
! TCCGGCTTGTAAGTAATTCT+GGG + chr4_1:14076396-14076415 Msa0536780:three_prime_UTR 40.0%
GTTTGTGCAGATGAATTGCT+TGG - chr4_1:14076424-14076443 None:intergenic 40.0%
GTGTTAGGTTATGGTTTGAG+AGG + chr4_1:14076521-14076540 Msa0536780:three_prime_UTR 40.0%
!! GTCATGGGTTTGGTGAATCT+AGG - chr4_1:14070917-14070936 None:intergenic 45.0%
AACACCGACAAGAACAACCT+CGG - chr4_1:14070961-14070980 None:intergenic 45.0%
AAGTTCTGCACAGCTTTACG+AGG + chr4_1:14071124-14071143 Msa0536780:CDS 45.0%
! TTGCTGTCGGATTTGGAATG+CGG + chr4_1:14071592-14071611 Msa0536780:intron 45.0%
GAATGCGGCGTAGAAATAAG+AGG + chr4_1:14071607-14071626 Msa0536780:intron 45.0%
CGGCGTAGAAATAAGAGGTT+AGG + chr4_1:14071612-14071631 Msa0536780:intron 45.0%
TGTCACGATGCTTGACTTTG+TGG + chr4_1:14071764-14071783 Msa0536780:intron 45.0%
GTGGAAATTGCGATCAAGCA+CGG + chr4_1:14071783-14071802 Msa0536780:intron 45.0%
! GGATGACGTTTTCTCGATCT+TGG + chr4_1:14071804-14071823 Msa0536780:intron 45.0%
TTTACGCCGCATTCACAATC+TGG - chr4_1:14071897-14071916 None:intergenic 45.0%
! TGCCACGATGCTTGATTTTG+TGG + chr4_1:14072092-14072111 Msa0536780:intron 45.0%
! CATTTGTGCGCGATGCTTTT+TGG + chr4_1:14072479-14072498 Msa0536780:intron 45.0%
GCAGAAGTTGCGATCAAACA+TGG + chr4_1:14072653-14072672 Msa0536780:intron 45.0%
GTGATTGTGTCCAGATGTCA+CGG - chr4_1:14072720-14072739 None:intergenic 45.0%
! AGTTTGGAGGTACACTTCCA+GGG - chr4_1:14073067-14073086 None:intergenic 45.0%
TCAATTGTAGGCCTCCAGTT+TGG - chr4_1:14073083-14073102 None:intergenic 45.0%
CCTCTCTCCTCATCAATTGT+AGG - chr4_1:14073095-14073114 None:intergenic 45.0%
CCTACAATTGATGAGGAGAG+AGG + chr4_1:14073092-14073111 Msa0536780:CDS 45.0%
AATTGATGAGGAGAGAGGAG+AGG + chr4_1:14073097-14073116 Msa0536780:CDS 45.0%
GGAGAGGAAGATCCATTAGT+TGG + chr4_1:14073113-14073132 Msa0536780:CDS 45.0%
! TACCGGATCCGTTGATTAGA+TGG - chr4_1:14073167-14073186 None:intergenic 45.0%
ATCAACGGATCCGGTATTGT+AGG + chr4_1:14073171-14073190 Msa0536780:CDS 45.0%
GGTTGCACTTCCTACAATAC+CGG - chr4_1:14073184-14073203 None:intergenic 45.0%
ACTGAACAATGATGGCATCG+AGG - chr4_1:14073218-14073237 None:intergenic 45.0%
TAACTACCCACACACAATGG+TGG - chr4_1:14073361-14073380 None:intergenic 45.0%
GTGTGGGTAGTTAACTGTGT+TGG + chr4_1:14073368-14073387 Msa0536780:CDS 45.0%
GTGGGTAGTTAACTGTGTTG+GGG + chr4_1:14073370-14073389 Msa0536780:CDS 45.0%
CAGTAACGATGCAGTCACTA+GGG - chr4_1:14073701-14073720 None:intergenic 45.0%
AAAGCGAGGTTCAAAACTGC+AGG - chr4_1:14073871-14073890 None:intergenic 45.0%
GCTTTCGCATTGAGTGTGAT+GGG + chr4_1:14073886-14073905 Msa0536780:CDS 45.0%
GGAAGTTGGATAAGGTGTAG+GGG - chr4_1:14074015-14074034 None:intergenic 45.0%
GTGGAAGTTGGATAAGGTGT+AGG - chr4_1:14074017-14074036 None:intergenic 45.0%
CTTCAGGTGGAAGTTGGATA+AGG - chr4_1:14074023-14074042 None:intergenic 45.0%
CAGTTTCTTCAGGTGGAAGT+TGG - chr4_1:14074029-14074048 None:intergenic 45.0%
CAACTTAGGGACTGTTTGGA+TGG - chr4_1:14074348-14074367 None:intergenic 45.0%
AGCATTTACCTCAGTGACAG+AGG - chr4_1:14074419-14074438 None:intergenic 45.0%
! GTTTGCTCTTTGTTGTGAGC+AGG + chr4_1:14074550-14074569 Msa0536780:intron 45.0%
ACATGTGTCTGTGTCAGCTT+AGG + chr4_1:14075396-14075415 Msa0536780:intron 45.0%
TTTACACATGGGGGAAACGA+GGG - chr4_1:14075521-14075540 None:intergenic 45.0%
CAGCACAAGTTTACACATGG+GGG - chr4_1:14075530-14075549 None:intergenic 45.0%
TCACATCTGCAGAAAGAGTC+TGG - chr4_1:14075586-14075605 None:intergenic 45.0%
TTGGGACGGACAAGAAATAC+TGG + chr4_1:14075960-14075979 Msa0536780:CDS 45.0%
!! GAATCGAAGTCGGGTTTTGA+TGG - chr4_1:14076049-14076068 None:intergenic 45.0%
AGCTATTGGGAATCGAAGTC+GGG - chr4_1:14076058-14076077 None:intergenic 45.0%
CAGCTATTGGGAATCGAAGT+CGG - chr4_1:14076059-14076078 None:intergenic 45.0%
CTGAAACAGAGTGAAAACCG+GGG - chr4_1:14076156-14076175 None:intergenic 45.0%
CCTGAAACAGAGTGAAAACC+GGG - chr4_1:14076157-14076176 None:intergenic 45.0%
GCCCAGAATTACTTACAAGC+CGG - chr4_1:14076400-14076419 None:intergenic 45.0%
AAATGGAGGGAGCAATGAGA+GGG + chr4_1:14076494-14076513 Msa0536780:three_prime_UTR 45.0%
AGCTCCGAGGTTGTTCTTGT+CGG + chr4_1:14070954-14070973 Msa0536780:five_prime_UTR 50.0%
! GCATAGATCTGGAGCTACGA+TGG + chr4_1:14071087-14071106 Msa0536780:CDS 50.0%
TGCACAGCTTTACGAGGACT+TGG + chr4_1:14071130-14071149 Msa0536780:CDS 50.0%
TTGTCAGGGTAGTTGTGTCG+CGG + chr4_1:14071738-14071757 Msa0536780:intron 50.0%
GTGGAAGTTGCGATCAAGCA+TGG + chr4_1:14072111-14072130 Msa0536780:intron 50.0%
TGGATGATGCAGTCACGATG+CGG + chr4_1:14072673-14072692 Msa0536780:intron 50.0%
! CAGTTTGGAGGTACACTTCC+AGG - chr4_1:14073068-14073087 None:intergenic 50.0%
! CTGGAAGTGTACCTCCAAAC+TGG + chr4_1:14073066-14073085 Msa0536780:CDS 50.0%
GAAGTGTACCTCCAAACTGG+AGG + chr4_1:14073069-14073088 Msa0536780:CDS 50.0%
ATTGTAGGCCTCCAGTTTGG+AGG - chr4_1:14073080-14073099 None:intergenic 50.0%
CTGGAGGCCTACAATTGATG+AGG + chr4_1:14073085-14073104 Msa0536780:CDS 50.0%
! GAACAATGATGGCATCGAGG+CGG - chr4_1:14073215-14073234 None:intergenic 50.0%
AGATGGACCACCATTGTGTG+TGG + chr4_1:14073351-14073370 Msa0536780:CDS 50.0%
GATGGACCACCATTGTGTGT+GGG + chr4_1:14073352-14073371 Msa0536780:CDS 50.0%
GCAGTAACGATGCAGTCACT+AGG - chr4_1:14073702-14073721 None:intergenic 50.0%
CAAGAGAGCTAGGTGTTCCA+GGG - chr4_1:14073759-14073778 None:intergenic 50.0%
TCACACTCAATGCGAAAGCG+AGG - chr4_1:14073885-14073904 None:intergenic 50.0%
CGCTTTCGCATTGAGTGTGA+TGG + chr4_1:14073885-14073904 Msa0536780:CDS 50.0%
GGCGTTATGATCTTGGTCGT+CGG + chr4_1:14074600-14074619 Msa0536780:CDS 50.0%
GTTTACACATGGGGGAAACG+AGG - chr4_1:14075522-14075541 None:intergenic 50.0%
TACTCGAGACCTTGTAGAGC+TGG - chr4_1:14076025-14076044 None:intergenic 50.0%
! CCCGGTTTTCACTCTGTTTC+AGG + chr4_1:14076154-14076173 Msa0536780:three_prime_UTR 50.0%
GAAATGGAGGGAGCAATGAG+AGG + chr4_1:14076493-14076512 Msa0536780:three_prime_UTR 50.0%
AATGGAGGGAGCAATGAGAG+GGG + chr4_1:14076495-14076514 Msa0536780:three_prime_UTR 50.0%
!! CAATGAGAGGGGGAAGTGTT+AGG + chr4_1:14076506-14076525 Msa0536780:three_prime_UTR 50.0%
!! GAGGGGGAAGTGTTAGGTTA+TGG + chr4_1:14076512-14076531 Msa0536780:three_prime_UTR 50.0%
! GATCTGGAGCTACGATGGCA+TGG + chr4_1:14071092-14071111 Msa0536780:CDS 55.0%
ATGCAGTCACGATGCGGTCA+TGG + chr4_1:14072679-14072698 Msa0536780:intron 55.0%
TGGGCGATGTGTGCTGAAGA+TGG + chr4_1:14073334-14073353 Msa0536780:CDS 55.0%
CAGTCACTAGGGACGTCTCA+AGG - chr4_1:14073690-14073709 None:intergenic 55.0%
GCAAGAGAGCTAGGTGTTCC+AGG - chr4_1:14073760-14073779 None:intergenic 55.0%
!! CTCGGTGTCAGTGTCTCGTT+TGG - chr4_1:14075334-14075353 None:intergenic 55.0%
CGAAGGATGCCAGCTCTACA+AGG + chr4_1:14076013-14076032 Msa0536780:CDS 55.0%
ATGGAGGGAGCAATGAGAGG+GGG + chr4_1:14076496-14076515 Msa0536780:three_prime_UTR 55.0%
CAGTCACGATGCGGTCATGG+TGG + chr4_1:14072682-14072701 Msa0536780:intron 60.0%
ACACATGGGGGAAACGAGGG+TGG - chr4_1:14075518-14075537 None:intergenic 60.0%
! GGCATCGAGGCGGCTTGAGC+TGG - chr4_1:14073205-14073224 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 14070758 14076735 14070758 ID=Msa0536780;Name=Msa0536780
chr4_1 mRNA 14070758 14076735 14070758 ID=Msa0536780-mRNA-1;Parent=Msa0536780;Name=Msa0536780-mRNA-1;_AED=0.07;_eAED=0.07;_QI=327|1|1|1|1|1|7|660|305
chr4_1 exon 14070758 14071294 14070758 ID=Msa0536780-mRNA-1:exon:4464;Parent=Msa0536780-mRNA-1
chr4_1 exon 14073020 14073239 14073020 ID=Msa0536780-mRNA-1:exon:4465;Parent=Msa0536780-mRNA-1
chr4_1 exon 14073333 14073424 14073333 ID=Msa0536780-mRNA-1:exon:4466;Parent=Msa0536780-mRNA-1
chr4_1 exon 14073676 14073799 14073676 ID=Msa0536780-mRNA-1:exon:4467;Parent=Msa0536780-mRNA-1
chr4_1 exon 14073875 14073960 14073875 ID=Msa0536780-mRNA-1:exon:4468;Parent=Msa0536780-mRNA-1
chr4_1 exon 14074572 14074637 14074572 ID=Msa0536780-mRNA-1:exon:4469;Parent=Msa0536780-mRNA-1
chr4_1 exon 14075956 14076735 14075956 ID=Msa0536780-mRNA-1:exon:4470;Parent=Msa0536780-mRNA-1
chr4_1 five_prime_UTR 14070758 14071084 14070758 ID=Msa0536780-mRNA-1:five_prime_utr;Parent=Msa0536780-mRNA-1
chr4_1 CDS 14071085 14071294 14071085 ID=Msa0536780-mRNA-1:cds;Parent=Msa0536780-mRNA-1
chr4_1 CDS 14073020 14073239 14073020 ID=Msa0536780-mRNA-1:cds;Parent=Msa0536780-mRNA-1
chr4_1 CDS 14073333 14073424 14073333 ID=Msa0536780-mRNA-1:cds;Parent=Msa0536780-mRNA-1
chr4_1 CDS 14073676 14073799 14073676 ID=Msa0536780-mRNA-1:cds;Parent=Msa0536780-mRNA-1
chr4_1 CDS 14073875 14073960 14073875 ID=Msa0536780-mRNA-1:cds;Parent=Msa0536780-mRNA-1
chr4_1 CDS 14074572 14074637 14074572 ID=Msa0536780-mRNA-1:cds;Parent=Msa0536780-mRNA-1
chr4_1 CDS 14075956 14076075 14075956 ID=Msa0536780-mRNA-1:cds;Parent=Msa0536780-mRNA-1
chr4_1 three_prime_UTR 14076076 14076735 14076076 ID=Msa0536780-mRNA-1:three_prime_utr;Parent=Msa0536780-mRNA-1
Gene Sequence

>Msa0536780

ATGCATAGATCTGGAGCTACGATGGCATGGAACGTGTTCAAGTTCTGCACAGCTTTACGAGGACTTGGTTCGATTATGATTTTGTTGGTTCTTGGTGTTGTTGGTGTTACTTATTATGCTGTTGTTATTACCAATTATGTTCCTTCTTTGTATAATGGAGGGTTTGATTCTCTTATTGCTGTCTTGGTTTTGATCTTGTTTCATGCTTTGTTGGTTATGCTATTGTGGAGTTATTTTTCCGTAGTTTTTATTGACCCTGGAAGTGTACCTCCAAACTGGAGGCCTACAATTGATGAGGAGAGAGGAGAGGAAGATCCATTAGTTGGGTTAGAGTTCAGTAACATGCAGAGTGATCCATCTAATCAACGGATCCGGTATTGTAGGAAGTGCAACCAGCTCAAGCCGCCTCGATGCCATCATTGTTCAGTTTGTGGGCGATGTGTGCTGAAGATGGACCACCATTGTGTGTGGGTAGTTAACTGTGTTGGGGCTCTAAATTACAAGTATTTCCTTCTTTTCTTGTTTTATACTTTCCTTGAGACGTCCCTAGTGACTGCATCGTTACTGCCGCATTTCATAGCATTCTTTAGTGATGGAGAAATCCCTGGAACACCTAGCTCTCTTGCTACAACTTTTCTTGCTTTTGTTTTGAACCTCGCTTTCGCATTGAGTGTGATGGGATTTCTGATTATGCACATATCATTGGTTGCTGCTAATACAACCACTATTGAGGCATATGAGAAGAAAACTACTCCAAAATGGCGTTATGATCTTGGTCGTCGGAAAAATTTTGAACAGGTTTTTGGGACGGACAAGAAATACTGGTTCATTCCTGCTTATTCAGAAGAAGATATTCGAAGGATGCCAGCTCTACAAGGTCTCGAGTATCCATCAAAACCCGACTTCGATTCCCAATAG
Protein sequence

>Msa0536780

MHRSGATMAWNVFKFCTALRGLGSIMILLVLGVVGVTYYAVVITNYVPSLYNGGFDSLIAVLVLILFHALLVMLLWSYFSVVFIDPGSVPPNWRPTIDEERGEEDPLVGLEFSNMQSDPSNQRIRYCRKCNQLKPPRCHHCSVCGRCVLKMDHHCVWVVNCVGALNYKYFLLFLFYTFLETSLVTASLLPHFIAFFSDGEIPGTPSSLATTFLAFVLNLAFALSVMGFLIMHISLVAANTTTIEAYEKKTTPKWRYDLGRRKNFEQVFGTDKKYWFIPAYSEEDIRRMPALQGLEYPSKPDFDSQ*