AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0193000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0193000 MtrunA17_Chr2g0283631 93.919 148 5 2 1 148 1 144 1.17e-77 226
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0193000 AT1G29070.1 61.321 106 34 3 44 148 56 155 2.36e-29 105

Find 33 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAAATGCAGACAAGTTTA+AGG 0.163360 2_1:-8815090 None:intergenic
TTCCACTCTTCTACCATTTC+AGG 0.167216 2_1:+8812591 Msa0193000:CDS
AAGCAATGGAGAACGAAATT+TGG 0.248963 2_1:-8812523 None:intergenic
AAATGCAAGATTAGACTTGA+TGG 0.349270 2_1:+8815220 Msa0193000:three_prime_UTR
TCCAGGTTTGTCACTGGGAT+TGG 0.354922 2_1:+8814793 Msa0193000:intron
CCATGTCCAGGTTTGTCACT+GGG 0.366798 2_1:+8814788 Msa0193000:intron
TGTCTTCTAGGTCCAACATT+AGG 0.373666 2_1:-8814824 None:intergenic
TCCATGTCCAGGTTTGTCAC+TGG 0.393144 2_1:+8814787 Msa0193000:intron
GCCACTATTTGCGTGGCTCT+TGG 0.405290 2_1:-8815020 None:intergenic
GAGTGGAAAGAGAGAGAAGA+AGG 0.436096 2_1:-8812576 None:intergenic
AAACGAATGAGCACAACAAC+TGG 0.446755 2_1:+8814947 Msa0193000:CDS
GAACTGAGAGAGATTGAAGA+TGG 0.451682 2_1:-8812498 None:intergenic
GTTGGACCTAGAAGACAAAA+TGG 0.465141 2_1:+8814830 Msa0193000:CDS
AAAATTTATCGGTCAAAATA+CGG 0.469035 2_1:-8815298 None:intergenic
TAGAAGACAAAATGGTCGTC+TGG 0.490410 2_1:+8814838 Msa0193000:CDS
AGTGGGTGCTCTGAATTTCA+TGG 0.501238 2_1:-8812457 None:intergenic
ACCAAGAGCCACGCAAATAG+TGG 0.502785 2_1:+8815019 Msa0193000:CDS
GAAAGAGAGAGAAGAAGGAG+AGG 0.509500 2_1:-8812571 None:intergenic
AAGTAGATCACGAAAATCAT+TGG 0.511560 2_1:+8814904 Msa0193000:CDS
AGAGGAAAGAGAAGAAGTGA+AGG 0.513017 2_1:-8812553 None:intergenic
TTGCGTGGCTCTTGGTGCAA+AGG 0.521900 2_1:-8815012 None:intergenic
TTGTTGTGCTCATTCGTTTG+CGG 0.530347 2_1:-8814943 None:intergenic
AAATCATTGGCACGCACTCA+TGG 0.536974 2_1:+8814917 Msa0193000:CDS
GTGAAGGAGCAATGAAGCAA+TGG 0.546159 2_1:-8812537 None:intergenic
CAATGGAGAACGAAATTTGG+AGG 0.554985 2_1:-8812520 None:intergenic
CTGAATTTCATGGATATCAA+AGG 0.555430 2_1:-8812447 None:intergenic
CGTCTGGTTATAGTAGCAGC+AGG 0.557576 2_1:+8814854 Msa0193000:CDS
TTGGACTTGAAACCTAATGT+TGG 0.565813 2_1:+8814812 Msa0193000:CDS
ATTAAAGCGACGACGCGCCA+AGG 0.568139 2_1:+8814979 Msa0193000:CDS
TACCTGAAATGGTAGAAGAG+TGG 0.590029 2_1:-8812593 None:intergenic
ACTATTTGCCACTATTTGCG+TGG 0.627313 2_1:-8815027 None:intergenic
TTAAAGCGACGACGCGCCAA+GGG 0.641870 2_1:+8814980 Msa0193000:CDS
TTTGAAGAAGCAGTGAAAGT+GGG 0.659697 2_1:-8812474 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAAAATGTTTTATTGT+TGG + chr2_1:8812951-8812970 Msa0193000:intron 10.0%
!!! AAAAAAAATGTTTTATTGTT+GGG + chr2_1:8812952-8812971 Msa0193000:intron 10.0%
!!! ATGTTTTTCTAAAATAAATT+AGG - chr2_1:8813768-8813787 None:intergenic 10.0%
!!! TACTTTTCTTTTTTAAATTA+CGG - chr2_1:8813801-8813820 None:intergenic 10.0%
!!! AGTAGAAAAATTATTTTAAT+TGG + chr2_1:8814004-8814023 Msa0193000:intron 10.0%
!! ATTTGAGAAAATAAAAAATT+TGG - chr2_1:8814545-8814564 None:intergenic 10.0%
!!! TTTAAAACTTGTATTATTTT+AGG + chr2_1:8815165-8815184 Msa0193000:three_prime_UTR 10.0%
!! AAAAAAACAAGAAATTAAGT+TGG - chr2_1:8812632-8812651 None:intergenic 15.0%
!!! ACATGTTTTATTTTTGTTAT+TGG + chr2_1:8812891-8812910 Msa0193000:intron 15.0%
!!! CACTTTTCATTTTTAAATTA+CGG + chr2_1:8813215-8813234 Msa0193000:intron 15.0%
!! GAAAACTAAAATAAACATAA+GGG - chr2_1:8813542-8813561 None:intergenic 15.0%
!! TGAAAACTAAAATAAACATA+AGG - chr2_1:8813541-8813560 None:intergenic 15.0%
!! GAAAACTAAAATAAACATAA+GGG - chr2_1:8813542-8813561 None:intergenic 15.0%
!! TGAAAACTAAAATAAACATA+AGG - chr2_1:8813541-8813560 None:intergenic 15.0%
!! GAAAACTAAAATAAACATAA+GGG - chr2_1:8813542-8813561 None:intergenic 15.0%
!! TGAAAACTAAAATAAACATA+AGG - chr2_1:8813541-8813560 None:intergenic 15.0%
!! TGAAAACTAAAATAAACATA+AGG + chr2_1:8813541-8813560 Msa0193000:intron 15.0%
!! GAAAACTAAAATAAACATAA+GGG + chr2_1:8813542-8813561 Msa0193000:intron 15.0%
!! TGAAAACTAAAATAAACATA+AGG + chr2_1:8813541-8813560 Msa0193000:intron 15.0%
!! GAAAACTAAAATAAACATAA+GGG + chr2_1:8813542-8813561 Msa0193000:intron 15.0%
!! TGAAAACTAAAATAAACATA+AGG + chr2_1:8813541-8813560 Msa0193000:intron 15.0%
!! GAAAACTAAAATAAACATAA+GGG + chr2_1:8813542-8813561 Msa0193000:intron 15.0%
!!! GTTTATTTTAGTTTTCAAAT+TGG - chr2_1:8813720-8813739 None:intergenic 15.0%
!! TGAAAACTAAAATAAACATA+AGG + chr2_1:8813541-8813560 Msa0193000:intron 15.0%
!! GAAAACTAAAATAAACATAA+GGG + chr2_1:8813542-8813561 Msa0193000:intron 15.0%
TATTTTCTCAAATTATGAT+CGG + chr2_1:8814552-8814571 Msa0193000:intron 15.0%
!! ATATAGTTAAAAAATTTGTC+CGG + chr2_1:8814734-8814753 Msa0193000:intron 15.0%
!!! TACACAAATATAATACTTTT+AGG - chr2_1:8815063-8815082 None:intergenic 15.0%
!!! AATACAAGTTTTAAACATAA+AGG - chr2_1:8815160-8815179 None:intergenic 15.0%
!!! TTTTTTGTGTGATTGAAATT+TGG + chr2_1:8812650-8812669 Msa0193000:intron 20.0%
!!! TTTTAATTCTAACCAACATA+AGG + chr2_1:8812729-8812748 Msa0193000:intron 20.0%
!! TTAAACATAATCTGATACTT+AGG - chr2_1:8812820-8812839 None:intergenic 20.0%
!! ACAAAAATAAAACATGTTTG+AGG - chr2_1:8812888-8812907 None:intergenic 20.0%
!!! TTATTTTTGTTATTGGTTGT+TGG + chr2_1:8812898-8812917 Msa0193000:intron 20.0%
!!! TCATTTAGTTACATTCTTTT+AGG + chr2_1:8813137-8813156 Msa0193000:intron 20.0%
!!! CATTTAGTTACATTCTTTTA+GGG + chr2_1:8813138-8813157 Msa0193000:intron 20.0%
!! TTCAATCACACTTAATTTAT+TGG + chr2_1:8813298-8813317 Msa0193000:intron 20.0%
!!! GTTTATTTTAGTTTTCAAGT+TGG + chr2_1:8813346-8813365 Msa0193000:intron 20.0%
!!! TGAAAACTTTTAAAACGTAA+GGG - chr2_1:8813402-8813421 None:intergenic 20.0%
!!! TTGAAAACTTTTAAAACGTA+AGG - chr2_1:8813403-8813422 None:intergenic 20.0%
!!! GTTTATTTTAGTTTTCAAGT+TGG + chr2_1:8813346-8813365 Msa0193000:intron 20.0%
!!! GTTTATTTTAGTTTTCAAGT+CGG + chr2_1:8813346-8813365 Msa0193000:intron 20.0%
!!! GTTTATTTTAGTTTTCAAGT+TGG - chr2_1:8813346-8813365 None:intergenic 20.0%
!!! GTTTATTTTAGTTTTCAAGT+TGG - chr2_1:8813346-8813365 None:intergenic 20.0%
!!! GTTTATTTTAGTTTTCAAGT+TGG - chr2_1:8813346-8813365 None:intergenic 20.0%
!!! GTTTATTTTAGTTTTCAAGT+TGG - chr2_1:8813346-8813365 None:intergenic 20.0%
!! TGAAAACTAAAATAAACGTA+TGG + chr2_1:8813663-8813682 Msa0193000:intron 20.0%
!! GAAAACTAAAATAAACGTAT+GGG + chr2_1:8813664-8813683 Msa0193000:intron 20.0%
!! ACAATAAGAAAATAACCTAA+GGG - chr2_1:8813858-8813877 None:intergenic 20.0%
!! AACAATAAGAAAATAACCTA+AGG - chr2_1:8813859-8813878 None:intergenic 20.0%
!! AAAACATTTCAATCTTATAG+AGG - chr2_1:8814400-8814419 None:intergenic 20.0%
!!! TCTTCTTATTTTCATAACAA+TGG + chr2_1:8815123-8815142 Msa0193000:three_prime_UTR 20.0%
! AACTCAAAAAAAGAGGATAA+TGG + chr2_1:8812398-8812417 Msa0193000:exon 25.0%
!!! ATTAAGTTGGAAAAGGAAAA+AGG - chr2_1:8812619-8812638 None:intergenic 25.0%
!!! ACAAGAAATTAAGTTGGAAA+AGG - chr2_1:8812626-8812645 None:intergenic 25.0%
!! GTTTAAGCTTTAGTTAATAG+CGG + chr2_1:8812672-8812691 Msa0193000:intron 25.0%
!! ATAGCGGTTGAATTTTTAAT+TGG + chr2_1:8812688-8812707 Msa0193000:intron 25.0%
! TTGAAACTTTCAAAACGTAA+GGG - chr2_1:8813633-8813652 None:intergenic 25.0%
!!! CGTTTTAAAAGTTTTCAAGT+TGG + chr2_1:8813405-8813424 Msa0193000:intron 25.0%
! TTGAAACTTTCAAAACGTAA+GGG - chr2_1:8813633-8813652 None:intergenic 25.0%
! TTGAAACTTTCAAAACGTAA+GGG + chr2_1:8813633-8813652 Msa0193000:intron 25.0%
!!! ATGTTTTGAAAGTTTCAAGT+TGG - chr2_1:8813691-8813710 None:intergenic 25.0%
! CTTGAAACTTTCAAAACATA+AGG + chr2_1:8813692-8813711 Msa0193000:intron 25.0%
!!! CAAACTAGTTCTATTCAATT+CGG - chr2_1:8813938-8813957 None:intergenic 25.0%
! AAAACTGAATTGAAACATAC+CGG - chr2_1:8813970-8813989 None:intergenic 25.0%
!!! ACATTATCATCATTGATTCT+AGG + chr2_1:8814119-8814138 Msa0193000:intron 25.0%
!!! ACATTATCATCATTGATTCT+AGG + chr2_1:8814119-8814138 Msa0193000:intron 25.0%
!! TTTCAATCTTATAGAGGTAT+TGG - chr2_1:8814394-8814413 None:intergenic 25.0%
! TCATTGTCAAGTTATTTACA+TGG - chr2_1:8814440-8814459 None:intergenic 25.0%
!! TTGTAGTTCTTTTGCAATAA+TGG + chr2_1:8814664-8814683 Msa0193000:intron 25.0%
GTAGCAAAACTCAAAAAAAG+AGG + chr2_1:8812391-8812410 Msa0193000:five_prime_UTR 30.0%
CTGAATTTCATGGATATCAA+AGG - chr2_1:8812450-8812469 None:intergenic 30.0%
! TTGTTGGTTAGTTATGCAAT+TGG + chr2_1:8812914-8812933 Msa0193000:intron 30.0%
! TGGAATGAAGGTTTCATTTT+TGG + chr2_1:8813004-8813023 Msa0193000:intron 30.0%
TTATGCTTCTGCATTTGTAA+TGG + chr2_1:8813055-8813074 Msa0193000:intron 30.0%
! TCTGCATTTGTAATGGAAAA+TGG + chr2_1:8813062-8813081 Msa0193000:intron 30.0%
! CTGCATTTGTAATGGAAAAT+GGG + chr2_1:8813063-8813082 Msa0193000:intron 30.0%
! TGCATTTGTAATGGAAAATG+GGG + chr2_1:8813064-8813083 Msa0193000:intron 30.0%
TGTAACTAAATGAACAGCAT+AGG - chr2_1:8813130-8813149 None:intergenic 30.0%
!! TATTGGCTTAATTGCATGTT+TGG + chr2_1:8813315-8813334 Msa0193000:intron 30.0%
CTTGAAACTTTCAAAACGTA+AGG - chr2_1:8813632-8813651 None:intergenic 30.0%
!!! ACGTTTTGAAAGTTTCAAGT+TGG + chr2_1:8813375-8813394 Msa0193000:intron 30.0%
CTTGAAACTTTCAAAACGTA+AGG - chr2_1:8813632-8813651 None:intergenic 30.0%
!!! ACGTTTTGAAAGTTTCAAGT+TGG + chr2_1:8813375-8813394 Msa0193000:intron 30.0%
CTTGAAACTTTCAAAACGTA+AGG + chr2_1:8813632-8813651 Msa0193000:intron 30.0%
ATTAGGCTTAATTGCATGTT+TGG - chr2_1:8813751-8813770 None:intergenic 30.0%
! AACTAGTTTGAATGTAGTAC+CGG + chr2_1:8813948-8813967 Msa0193000:intron 30.0%
! TGTTGATATTGCTTTAGCTT+TGG + chr2_1:8814082-8814101 Msa0193000:intron 30.0%
!!! TAGGACGTTTATTTTTGTGT+TGG + chr2_1:8814138-8814157 Msa0193000:intron 30.0%
!!! CGTTTATTTTTGTGTTGGTT+TGG + chr2_1:8814143-8814162 Msa0193000:intron 30.0%
!!! TAGGACGTTTATTTTTGTGT+TGG + chr2_1:8814138-8814157 Msa0193000:intron 30.0%
GACTTCAATGATCTTTACAA+AGG - chr2_1:8814357-8814376 None:intergenic 30.0%
!!! AAATGTTTTTTCAACTGCCA+AGG + chr2_1:8814411-8814430 Msa0193000:intron 30.0%
AGTTATTTACATGGAATCCT+TGG - chr2_1:8814431-8814450 None:intergenic 30.0%
! ACTTCATGTCAAAGTTTGTT+TGG + chr2_1:8814489-8814508 Msa0193000:intron 30.0%
AAATCAAGTCAAGCTAAATC+CGG - chr2_1:8814756-8814775 None:intergenic 30.0%
AAGTAGATCACGAAAATCAT+TGG + chr2_1:8814904-8814923 Msa0193000:CDS 30.0%
TTGAAATGCAGACAAGTTTA+AGG - chr2_1:8815093-8815112 None:intergenic 30.0%
!!! ATTTTTTTTTTGCAGCACAC+TGG - chr2_1:8815204-8815223 None:intergenic 30.0%
AAATGCAAGATTAGACTTGA+TGG + chr2_1:8815220-8815239 Msa0193000:three_prime_UTR 30.0%
! TGAGTTTTGCTACGTGTTTT+CGG - chr2_1:8812384-8812403 None:intergenic 35.0%
TTTGAAGAAGCAGTGAAAGT+GGG - chr2_1:8812477-8812496 None:intergenic 35.0%
!! TTTTGAAGAAGCAGTGAAAG+TGG - chr2_1:8812478-8812497 None:intergenic 35.0%
AAGCAATGGAGAACGAAATT+TGG - chr2_1:8812526-8812545 None:intergenic 35.0%
!! AAGGAAAAAGGTACCTGAAA+TGG - chr2_1:8812607-8812626 None:intergenic 35.0%
TCTAACCAACATAAGGTTAG+TGG + chr2_1:8812736-8812755 Msa0193000:intron 35.0%
CTAACCAACATAAGGTTAGT+GGG + chr2_1:8812737-8812756 Msa0193000:intron 35.0%
GGTTTGATTGAACTTGACTA+TGG + chr2_1:8812973-8812992 Msa0193000:intron 35.0%
TTGATTGAACTTGACTATGG+TGG + chr2_1:8812976-8812995 Msa0193000:intron 35.0%
!!! ACATTCTTTTAGGGTGTGTT+TGG + chr2_1:8813147-8813166 Msa0193000:intron 35.0%
! AAATAACCTAAGGGTGTGTT+TGG - chr2_1:8813849-8813868 None:intergenic 35.0%
!! TGATATTGCTTTAGCTTTGG+TGG + chr2_1:8814085-8814104 Msa0193000:intron 35.0%
!!! ACGTTTATTTTTGTGTTGGC+TGG + chr2_1:8814190-8814209 Msa0193000:intron 35.0%
GCGACTTAAAGTAAGGAATT+TGG + chr2_1:8814264-8814283 Msa0193000:intron 35.0%
AAGTGTCAGTACTGCAAAAA+TGG - chr2_1:8814473-8814492 None:intergenic 35.0%
!! CAAATTATGATCGGTGTCAA+CGG + chr2_1:8814560-8814579 Msa0193000:intron 35.0%
!! AAATTATGATCGGTGTCAAC+GGG + chr2_1:8814561-8814580 Msa0193000:intron 35.0%
! GCTTTGTTGGAAATTGTATG+CGG + chr2_1:8814619-8814638 Msa0193000:intron 35.0%
ATGCTTTGCTTGCAATTGTT+TGG + chr2_1:8814689-8814708 Msa0193000:intron 35.0%
TTGGACTTGAAACCTAATGT+TGG + chr2_1:8814812-8814831 Msa0193000:CDS 35.0%
! TTTTCGTGATCTACTTCTCT+TGG - chr2_1:8814900-8814919 None:intergenic 35.0%
GAACTGAGAGAGATTGAAGA+TGG - chr2_1:8812501-8812520 None:intergenic 40.0%
CAATGGAGAACGAAATTTGG+AGG - chr2_1:8812523-8812542 None:intergenic 40.0%
AGAGGAAAGAGAAGAAGTGA+AGG - chr2_1:8812556-8812575 None:intergenic 40.0%
TTCCACTCTTCTACCATTTC+AGG + chr2_1:8812591-8812610 Msa0193000:CDS 40.0%
TACCTGAAATGGTAGAAGAG+TGG - chr2_1:8812596-8812615 None:intergenic 40.0%
CAAACCCACTAACCTTATGT+TGG - chr2_1:8812744-8812763 None:intergenic 40.0%
AAATGGGGTTGTGTTGTAAG+TGG + chr2_1:8813079-8813098 Msa0193000:intron 40.0%
! TTTAGGGTGTGTTTGGATTG+AGG + chr2_1:8813154-8813173 Msa0193000:intron 40.0%
TTAGGGTGTGTTTGGATTGA+GGG + chr2_1:8813155-8813174 Msa0193000:intron 40.0%
TGTGTTTGGATTGAGGGTTT+AGG + chr2_1:8813161-8813180 Msa0193000:intron 40.0%
TTTGGATTGAGGGTTTAGGA+GGG + chr2_1:8813165-8813184 Msa0193000:intron 40.0%
TCAAGTCGGTCCAAAACATA+AGG + chr2_1:8813510-8813529 Msa0193000:intron 40.0%
CAAGTCGGTCCAAAACATAA+GGG + chr2_1:8813511-8813530 Msa0193000:intron 40.0%
!!! CAAGTTGGTCCCTTATGTTT+TGG - chr2_1:8813449-8813468 None:intergenic 40.0%
TTTGGATTGAGGGTTTAGGA+GGG - chr2_1:8813165-8813184 None:intergenic 40.0%
TGTGTTTGGATTGAGGGTTT+AGG - chr2_1:8813161-8813180 None:intergenic 40.0%
! TAAGGGTGTGTTTGGATTGA+GGG - chr2_1:8813841-8813860 None:intergenic 40.0%
TCTCATCGCGACTTAAAGTA+AGG + chr2_1:8814257-8814276 Msa0193000:intron 40.0%
! GAAGTATTTCCATCTGACAC+AGG - chr2_1:8814326-8814345 None:intergenic 40.0%
!! TTTCCAACAAAGCACTGACA+CGG - chr2_1:8814612-8814631 None:intergenic 40.0%
! AAACTGATTTCTCCATGTCC+AGG + chr2_1:8814776-8814795 Msa0193000:intron 40.0%
TGTCTTCTAGGTCCAACATT+AGG - chr2_1:8814827-8814846 None:intergenic 40.0%
GTTGGACCTAGAAGACAAAA+TGG + chr2_1:8814830-8814849 Msa0193000:CDS 40.0%
! AGACGACCATTTTGTCTTCT+AGG - chr2_1:8814839-8814858 None:intergenic 40.0%
TAGAAGACAAAATGGTCGTC+TGG + chr2_1:8814838-8814857 Msa0193000:CDS 40.0%
TTGTTGTGCTCATTCGTTTG+CGG - chr2_1:8814946-8814965 None:intergenic 40.0%
AAACGAATGAGCACAACAAC+TGG + chr2_1:8814947-8814966 Msa0193000:CDS 40.0%
ACTATTTGCCACTATTTGCG+TGG - chr2_1:8815030-8815049 None:intergenic 40.0%
! AGTGGGTGCTCTGAATTTCA+TGG - chr2_1:8812460-8812479 None:intergenic 45.0%
GTGAAGGAGCAATGAAGCAA+TGG - chr2_1:8812540-8812559 None:intergenic 45.0%
GAAAGAGAGAGAAGAAGGAG+AGG - chr2_1:8812574-8812593 None:intergenic 45.0%
GAGTGGAAAGAGAGAGAAGA+AGG - chr2_1:8812579-8812598 None:intergenic 45.0%
ACTTGACTATGGTGGCTGTT+TGG + chr2_1:8812984-8813003 Msa0193000:intron 45.0%
! ATGGTGGCTGTTTGGAATGA+AGG + chr2_1:8812992-8813011 Msa0193000:intron 45.0%
GTTTGGATTGAGGGTTTAGG+AGG + chr2_1:8813164-8813183 Msa0193000:intron 45.0%
TTGGATTGAGGGTTTAGGAG+GGG + chr2_1:8813166-8813185 Msa0193000:intron 45.0%
TTGGATTGAGGGTTTAGGAG+GGG - chr2_1:8813166-8813185 None:intergenic 45.0%
GTTTGGATTGAGGGTTTAGG+AGG - chr2_1:8813164-8813183 None:intergenic 45.0%
! CTAAGGGTGTGTTTGGATTG+AGG - chr2_1:8813842-8813861 None:intergenic 45.0%
CTCAATCCAAACACACCCTT+AGG + chr2_1:8813840-8813859 Msa0193000:intron 45.0%
TCGTCGCTCTACTTTCTCTA+AGG + chr2_1:8814038-8814057 Msa0193000:intron 45.0%
! TGCTGTTTACCTGTGTCAGA+TGG + chr2_1:8814314-8814333 Msa0193000:intron 45.0%
AAATCATTGGCACGCACTCA+TGG + chr2_1:8814917-8814936 Msa0193000:CDS 45.0%
!!! ATAAAACATTTTTTTTTTTT+TGG - chr2_1:8812948-8812967 None:intergenic 5.0%
ATTGAGGGTTTAGGAGGGGA+GGG + chr2_1:8813170-8813189 Msa0193000:intron 50.0%
ATTGAGGGTTTAGGAGGGGA+GGG - chr2_1:8813170-8813189 None:intergenic 50.0%
CGATGAGAGCAAGATGAGCA+TGG - chr2_1:8814245-8814264 None:intergenic 50.0%
TGTCCGTGTCAGTGCTTTGT+TGG + chr2_1:8814606-8814625 Msa0193000:intron 50.0%
TCCATGTCCAGGTTTGTCAC+TGG + chr2_1:8814787-8814806 Msa0193000:intron 50.0%
CCATGTCCAGGTTTGTCACT+GGG + chr2_1:8814788-8814807 Msa0193000:intron 50.0%
TCCAGGTTTGTCACTGGGAT+TGG + chr2_1:8814793-8814812 Msa0193000:intron 50.0%
TCCAATCCCAGTGACAAACC+TGG - chr2_1:8814797-8814816 None:intergenic 50.0%
CGTCTGGTTATAGTAGCAGC+AGG + chr2_1:8814854-8814873 Msa0193000:CDS 50.0%
! GCAAAGGACTTTTCGTCCCT+TGG - chr2_1:8814999-8815018 None:intergenic 50.0%
ACCAAGAGCCACGCAAATAG+TGG + chr2_1:8815019-8815038 Msa0193000:CDS 50.0%
GATTGAGGGTTTAGGAGGGG+AGG + chr2_1:8813169-8813188 Msa0193000:intron 55.0%
TTGAGGGTTTAGGAGGGGAG+GGG + chr2_1:8813171-8813190 Msa0193000:intron 55.0%
GATTGAGGGTTTAGGAGGGG+AGG - chr2_1:8813169-8813188 None:intergenic 55.0%
CAACGGGTCAGTGTCGTGTA+TGG + chr2_1:8814577-8814596 Msa0193000:intron 55.0%
CCCAGTGACAAACCTGGACA+TGG - chr2_1:8814791-8814810 None:intergenic 55.0%
ATTAAAGCGACGACGCGCCA+AGG + chr2_1:8814979-8814998 Msa0193000:CDS 55.0%
TTAAAGCGACGACGCGCCAA+GGG + chr2_1:8814980-8814999 Msa0193000:CDS 55.0%
! TTGCGTGGCTCTTGGTGCAA+AGG - chr2_1:8815015-8815034 None:intergenic 55.0%
GCCACTATTTGCGTGGCTCT+TGG - chr2_1:8815023-8815042 None:intergenic 55.0%
AGGGTTTAGGAGGGGAGGGG+AGG + chr2_1:8813174-8813193 Msa0193000:intron 65.0%
GGGTTTAGGAGGGGAGGGGA+GGG + chr2_1:8813175-8813194 Msa0193000:intron 65.0%
GGTTTAGGAGGGGAGGGGAG+GGG + chr2_1:8813176-8813195 Msa0193000:intron 65.0%
TAGGAGGGGAGGGGAGGGGA+AGG + chr2_1:8813180-8813199 Msa0193000:intron 70.0%
AGGAGGGGAGGGGAGGGGAA+GGG + chr2_1:8813181-8813200 Msa0193000:intron 70.0%
AGGGGAGGGGAGGGGAAGGG+AGG + chr2_1:8813184-8813203 Msa0193000:intron 75.0%
GGGGAGGGGAGGGGAAGGGA+GGG + chr2_1:8813185-8813204 Msa0193000:intron 75.0%
GGGAGGGGAGGGGAAGGGAG+GGG + chr2_1:8813186-8813205 Msa0193000:intron 75.0%
AGGGGAGGGGAAGGGAGGGG+AGG + chr2_1:8813189-8813208 Msa0193000:intron 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 8812365 8815312 8812365 ID=Msa0193000;Name=Msa0193000
chr2_1 mRNA 8812365 8815312 8812365 ID=Msa0193000-mRNA-1;Parent=Msa0193000;Name=Msa0193000-mRNA-1;_AED=0.00;_eAED=0.00;_QI=52|1|1|1|1|1|2|264|148
chr2_1 exon 8812365 8812612 8812365 ID=Msa0193000-mRNA-1:exon:4030;Parent=Msa0193000-mRNA-1
chr2_1 exon 8814798 8815312 8814798 ID=Msa0193000-mRNA-1:exon:4031;Parent=Msa0193000-mRNA-1
chr2_1 five_prime_UTR 8812365 8812416 8812365 ID=Msa0193000-mRNA-1:five_prime_utr;Parent=Msa0193000-mRNA-1
chr2_1 CDS 8812417 8812612 8812417 ID=Msa0193000-mRNA-1:cds;Parent=Msa0193000-mRNA-1
chr2_1 CDS 8814798 8815048 8814798 ID=Msa0193000-mRNA-1:cds;Parent=Msa0193000-mRNA-1
chr2_1 three_prime_UTR 8815049 8815312 8815049 ID=Msa0193000-mRNA-1:three_prime_utr;Parent=Msa0193000-mRNA-1
Gene Sequence

>Msa0193000

ATGGCTTCGTTATCATCTTCTTCTGTGTCTCCTTTGATATCCATGAAATTCAGAGCACCCACTTTCACTGCTTCTTCAAAACCATCTTCAATCTCTCTCAGTTCCTCCAAATTTCGTTCTCCATTGCTTCATTGCTCCTTCACTTCTTCTCTTTCCTCTCCTTCTTCTCTCTCTTTCCACTCTTCTACCATTTCAGGTTTGTCACTGGGATTGGACTTGAAACCTAATGTTGGACCTAGAAGACAAAATGGTCGTCTGGTTATAGTAGCAGCAGGCAGACAAGCTCTTTGTCTAACCAAGAGAAGTAGATCACGAAAATCATTGGCACGCACTCATGGCTTCCGCAAACGAATGAGCACAACAACTGGAAGAGCTGTATTAAAGCGACGACGCGCCAAGGGACGAAAAGTCCTTTGCACCAAGAGCCACGCAAATAGTGGCAAATAG

Protein sequence

>Msa0193000

MASLSSSSVSPLISMKFRAPTFTASSKPSSISLSSSKFRSPLLHCSFTSSLSSPSSLSFHSSTISGLSLGLDLKPNVGPRRQNGRLVIVAAGRQALCLTKRSRSRKSLARTHGFRKRMSTTTGRAVLKRRRAKGRKVLCTKSHANSGK*