AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0671610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0671610 MtrunA17_Chr4g0011001 96.587 293 6 1 1 289 1 293 0.0 586
Msa0671610 MtrunA17_Chr7g0276121 51.333 300 135 4 11 299 7 306 1.34e-87 264
Msa0671610 MtrunA17_Chr4g0009911 32.083 240 141 5 50 278 45 273 5.81e-34 125
Msa0671610 MtrunA17_Chr1g0199411 30.534 262 146 6 26 275 20 257 7.30e-28 108
Msa0671610 MtrunA17_Chr1g0201631 26.531 294 190 9 22 297 32 317 6.00e-26 106
Msa0671610 MtrunA17_Chr6g0464751 29.893 281 153 12 45 299 58 320 3.40e-25 104
Msa0671610 MtrunA17_Chr3g0131931 31.188 202 114 6 81 264 103 297 1.62e-22 96.7
Msa0671610 MtrunA17_Chr6g0462021 29.870 231 124 8 59 266 83 298 5.89e-22 95.1
Msa0671610 MtrunA17_Chr7g0251761 28.253 269 167 8 13 264 37 296 2.62e-18 84.7
Msa0671610 MtrunA17_Chr7g0255161 27.083 240 125 10 60 263 15 240 7.80e-17 79.7
Msa0671610 MtrunA17_Chr7g0255151 27.536 207 113 7 81 264 111 303 2.49e-16 79.0
Msa0671610 MtrunA17_Chr7g0273371 26.070 257 139 8 25 254 83 315 2.57e-15 75.9
Msa0671610 MtrunA17_Chr1g0163561 35.714 126 58 5 62 181 103 211 8.99e-15 73.9
Msa0671610 MtrunA17_Chr4g0049351 29.018 224 130 9 81 288 325 535 1.55e-14 73.9
Msa0671610 MtrunA17_Chr4g0064931 27.148 291 168 12 26 289 289 562 2.09e-14 73.6
Msa0671610 MtrunA17_Chr4g0037991 35.294 119 65 4 122 229 170 287 2.35e-14 72.8
Msa0671610 MtrunA17_Chr1g0211241 27.413 259 141 9 19 259 376 605 3.38e-14 72.8
Msa0671610 MtrunA17_Chr1g0211231 25.733 307 165 13 6 300 288 543 1.37e-12 67.8
Msa0671610 MtrunA17_Chr1g0193941 27.389 157 100 4 41 194 84 229 4.95e-12 66.2
Msa0671610 MtrunA17_Chr5g0406311 29.032 186 113 6 116 296 163 334 5.07e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0671610 AT3G60800.1 82.410 307 48 2 1 301 1 307 0.0 506
Msa0671610 AT4G22750.1 65.667 300 94 4 8 301 1 297 4.25e-129 370
Msa0671610 AT4G00840.1 53.716 296 123 5 11 299 2 290 1.37e-100 297
Msa0671610 AT4G00840.2 54.327 208 81 5 11 211 2 202 2.00e-58 187
Msa0671610 AT3G09320.1 33.962 265 146 10 24 275 13 261 1.37e-31 119
Msa0671610 AT5G04270.1 32.103 271 143 8 25 279 13 258 9.96e-31 117
Msa0671610 AT3G26935.1 28.720 289 174 10 13 284 36 309 1.41e-25 105
Msa0671610 AT4G24630.1 27.757 263 166 8 24 269 33 288 1.78e-24 102
Msa0671610 AT5G41060.1 26.937 271 166 10 13 264 36 293 2.16e-23 99.4
Msa0671610 AT5G41060.2 26.937 271 166 10 13 264 21 278 2.22e-23 99.4
Msa0671610 AT5G41060.3 28.384 229 134 8 53 264 11 226 3.15e-22 95.5
Msa0671610 AT5G41060.4 28.384 229 134 8 53 264 11 226 3.15e-22 95.5
Msa0671610 AT5G50020.3 26.616 263 168 8 24 269 33 287 4.22e-21 93.2
Msa0671610 AT5G50020.2 26.616 263 168 8 24 269 63 317 5.10e-21 93.2
Msa0671610 AT5G05070.1 28.070 228 122 8 81 284 118 327 6.29e-18 84.0
Msa0671610 AT3G56920.1 27.542 236 123 10 62 264 64 284 5.94e-17 80.5
Msa0671610 AT3G48760.1 25.954 262 169 6 24 267 53 307 1.27e-16 80.5
Msa0671610 AT3G04970.1 27.953 254 132 9 22 251 80 306 1.80e-16 79.3
Msa0671610 AT5G50020.1 25.475 263 164 9 24 269 33 280 3.61e-16 78.6
Msa0671610 AT3G04970.3 27.642 246 127 9 30 251 1 219 4.50e-16 77.4
Msa0671610 AT2G40990.1 32.278 158 83 6 119 264 158 303 4.78e-16 78.2
Msa0671610 AT3G56930.1 24.335 263 171 7 22 264 38 292 9.79e-16 77.8
Msa0671610 AT3G04970.2 27.935 247 127 8 22 241 80 302 3.05e-15 75.1
Msa0671610 AT3G18620.1 54.386 57 26 0 122 178 149 205 3.72e-15 75.5
Msa0671610 AT2G14255.1 30.986 213 115 10 68 259 314 515 4.40e-15 75.9
Msa0671610 AT5G20350.1 26.578 301 176 14 25 300 283 563 1.10e-14 74.7
Msa0671610 AT4G01730.1 27.513 189 118 4 63 238 105 287 1.09e-12 68.6
Msa0671610 AT3G51390.2 32.143 140 89 3 123 262 159 292 8.97e-11 62.4

Find 114 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTAGGGTTTATTGAGAATT+TGG 0.109054 4_4:+15333665 None:intergenic
ATCCGGCTTGTAAGTAATTC+TGG 0.174428 4_4:-15328220 Msa0671610:three_prime_UTR
CCAAGATCATAACGCCATTT+TGG 0.205394 4_4:+15329981 None:intergenic
CTAGGGTTTATTGAGAATTT+GGG 0.240991 4_4:+15333666 None:intergenic
GGAACAAATCTAACATTATA+AGG 0.245071 4_4:+15328056 None:intergenic
CAGTTTGGAGGTACACTTCC+AGG 0.285240 4_4:+15331509 None:intergenic
TTAAACCAAATATGCCCTTA+TGG 0.302319 4_4:+15328529 None:intergenic
TGATTCTCTTATTGCTGTCT+TGG 0.311178 4_4:-15333325 Msa0671610:CDS
TTTGATCTTGTTTCATGCTT+TGG 0.318169 4_4:-15333301 Msa0671610:intron
TATGTTCCTTCTTTGTATAA+TGG 0.318990 4_4:-15333354 Msa0671610:CDS
CCTCTCTCCTCATCAATTGT+AGG 0.323601 4_4:+15331482 None:intergenic
CCAAAATGGCGTTATGATCT+TGG 0.333453 4_4:-15329981 Msa0671610:CDS
GTCATGGGTTTGGTGAATCT+AGG 0.337349 4_4:+15333648 None:intergenic
TACCGGATCCGTTGATTAGA+TGG 0.344373 4_4:+15331410 None:intergenic
ATACAAAGAAGGAACATAAT+TGG 0.344556 4_4:+15333359 None:intergenic
ATTGAGATCGAAGTGGGTTT+TGG 0.345179 4_4:-15333515 Msa0671610:five_prime_UTR
GGAAGAGAATTGCAATGCTT+TGG 0.353783 4_4:+15328034 None:intergenic
GCAAGAGAGCTAGGTGTTCC+AGG 0.359082 4_4:+15330817 None:intergenic
TCTGATTATGCACATATCAT+TGG 0.372598 4_4:-15330662 Msa0671610:CDS
TGTGGGTAGTTAACTGTGTT+GGG 0.376839 4_4:-15331205 Msa0671610:CDS
AGAAGAAAACTACTCCAAAA+TGG 0.382057 4_4:-15329995 Msa0671610:CDS
GAAGAGAATTGCAATGCTTT+GGG 0.393702 4_4:+15328035 None:intergenic
TGTATGAGTGAGAAAGTAAA+GGG 0.400983 4_4:+15328244 None:intergenic
GGAGAGGAAGATCCATTAGT+TGG 0.403198 4_4:-15331461 Msa0671610:CDS
CTTTCTCACTCATACAAATC+CGG 0.412453 4_4:-15328237 Msa0671610:three_prime_UTR
GGCATCGAGGCGGCTTGAGC+TGG 0.413050 4_4:+15331372 None:intergenic
AGCTCCGAGGTTGTTCTTGT+CGG 0.414652 4_4:-15333608 Msa0671610:five_prime_UTR
TGATTGATTATGCATAGATC+TGG 0.415700 4_4:-15333486 Msa0671610:exon
TCATGGGTTTGGTGAATCTA+GGG 0.417197 4_4:+15333649 None:intergenic
CGCTTTCGCATTGAGTGTGA+TGG 0.421207 4_4:-15330689 Msa0671610:CDS
AATTGATGATTCTGCTTTGT+GGG 0.422280 4_4:-15333572 Msa0671610:five_prime_UTR
TCAATTGTAGGCCTCCAGTT+TGG 0.424125 4_4:+15331494 None:intergenic
ACCTGAAACAGAGTGAAAAC+CGG 0.429843 4_4:+15328458 None:intergenic
TTCATTGACTAACAACTCAT+TGG 0.431744 4_4:+15327912 None:intergenic
CTGGAAGTGTACCTCCAAAC+TGG 0.434261 4_4:-15331508 Msa0671610:CDS
ATGATGTGTACACTTCTGTT+TGG 0.440503 4_4:+15328294 None:intergenic
TTCCTTCTTTGTATAATGGA+GGG 0.446114 4_4:-15333350 Msa0671610:CDS
CTGAACTCTAACCCAACTAA+TGG 0.447036 4_4:+15331449 None:intergenic
GTGCATGTGTTAAGTTGAAA+TGG 0.449179 4_4:-15328138 Msa0671610:three_prime_UTR
GTGTGGGTAGTTAACTGTGT+TGG 0.451518 4_4:-15331206 Msa0671610:CDS
GTTCCTTCTTTGTATAATGG+AGG 0.453444 4_4:-15333351 Msa0671610:CDS
TCCGGCTTGTAAGTAATTCT+GGG 0.456621 4_4:-15328219 Msa0671610:three_prime_UTR
AAATTGATGATTCTGCTTTG+TGG 0.456748 4_4:-15333573 Msa0671610:five_prime_UTR
TTCATAGCATTCTTTAGTGA+TGG 0.458599 4_4:-15330847 Msa0671610:CDS
GGAAAACTTTACCTCAATAG+TGG 0.459164 4_4:+15330624 None:intergenic
AGCTATTGGGAATCGAAGTC+GGG 0.460014 4_4:+15328558 None:intergenic
TTGGGACGGACAAGAAATAC+TGG 0.473728 4_4:-15328653 Msa0671610:CDS
CAGCTATTGGGAATCGAAGT+CGG 0.479426 4_4:+15328557 None:intergenic
CCTGAAACAGAGTGAAAACC+GGG 0.485054 4_4:+15328459 None:intergenic
GTGTTAGGTTATGGTTTGAG+AGG 0.490604 4_4:-15328094 Msa0671610:three_prime_UTR
GAGAGGAAGATCCATTAGTT+GGG 0.491844 4_4:-15331460 Msa0671610:CDS
AAATGGAGGGAGCAATGAGA+GGG 0.494826 4_4:-15328121 Msa0671610:three_prime_UTR
TGTACACATCATGTAACAAA+AGG 0.494958 4_4:-15328283 Msa0671610:three_prime_UTR
AAAGTTGTAGCAAGAGAGCT+AGG 0.504375 4_4:+15330808 None:intergenic
TTGTATGAGTGAGAAAGTAA+AGG 0.504793 4_4:+15328243 None:intergenic
TACTCGAGACCTTGTAGAGC+TGG 0.507547 4_4:+15328591 None:intergenic
TGCACAGCTTTACGAGGACT+TGG 0.507888 4_4:-15333432 Msa0671610:CDS
CGAAGGATGCCAGCTCTACA+AGG 0.508944 4_4:-15328600 Msa0671610:CDS
ATCCATCTAATCAACGGATC+CGG 0.513865 4_4:-15331412 Msa0671610:CDS
GTTTGTGCAGATGAATTGCT+TGG 0.517980 4_4:+15328194 None:intergenic
GCTTTCGCATTGAGTGTGAT+GGG 0.523751 4_4:-15330688 Msa0671610:CDS
ATATCTTCTTCTGAATAAGC+AGG 0.525822 4_4:+15328624 None:intergenic
AACCCTCCATTATACAAAGA+AGG 0.526029 4_4:+15333348 None:intergenic
GAAATGGAGGGAGCAATGAG+AGG 0.526481 4_4:-15328122 Msa0671610:three_prime_UTR
ACTCACAAACTGAACAATGA+TGG 0.526589 4_4:+15331351 None:intergenic
TTTAGTGATGGAGAAATCCC+TGG 0.528395 4_4:-15330835 Msa0671610:CDS
CTTTGCATTGAGATCGAAGT+GGG 0.532329 4_4:-15333521 Msa0671610:five_prime_UTR
ATTGTAGGCCTCCAGTTTGG+AGG 0.536225 4_4:+15331497 None:intergenic
TTTATTTGCAAAACTGTCCC+CGG 0.537247 4_4:-15328477 Msa0671610:three_prime_UTR
GCAGTAACGATGCAGTCACT+AGG 0.540451 4_4:+15330875 None:intergenic
TGGGCGATGTGTGCTGAAGA+TGG 0.549501 4_4:-15331240 Msa0671610:CDS
GCCCAGAATTACTTACAAGC+CGG 0.551718 4_4:+15328218 None:intergenic
TGCAGTTGGTTATGCTATTG+TGG 0.552325 4_4:-15331559 Msa0671610:intron
ATCAACGGATCCGGTATTGT+AGG 0.557479 4_4:-15331403 Msa0671610:CDS
GGTTGCACTTCCTACAATAC+CGG 0.558949 4_4:+15331393 None:intergenic
ATGGAGGGAGCAATGAGAGG+GGG 0.560870 4_4:-15328119 Msa0671610:three_prime_UTR
AATTGAATAGAAGAAAATGA+AGG 0.563143 4_4:+15328013 None:intergenic
TGCTAATACAACCACTATTG+AGG 0.565179 4_4:-15330635 Msa0671610:intron
AACAGGAGACAGAATTAACA+TGG 0.565999 4_4:-15328382 Msa0671610:three_prime_UTR
GTGTTCATACCAAGAAAAGA+AGG 0.566591 4_4:+15331162 None:intergenic
AATGGAGGGAGCAATGAGAG+GGG 0.568316 4_4:-15328120 Msa0671610:three_prime_UTR
CAAGAGAGCTAGGTGTTCCA+GGG 0.573246 4_4:+15330818 None:intergenic
GATCTGGAGCTACGATGGCA+TGG 0.585026 4_4:-15333470 Msa0671610:CDS
CAGTCACTAGGGACGTCTCA+AGG 0.590525 4_4:+15330887 None:intergenic
TAGGGTTTATTGAGAATTTG+GGG 0.592322 4_4:+15333667 None:intergenic
GCATAGATCTGGAGCTACGA+TGG 0.600274 4_4:-15333475 Msa0671610:CDS
GGCGTTATGATCTTGGTCGT+CGG 0.603365 4_4:-15329974 Msa0671610:CDS
AGTGGAGAAGAAGATTGAAG+TGG 0.604930 4_4:+15333704 None:intergenic
AAGTTCTGCACAGCTTTACG+AGG 0.607927 4_4:-15333438 Msa0671610:CDS
ATTCAGAAGAAGATATTCGA+AGG 0.610112 4_4:-15328617 Msa0671610:CDS
CATGTGTTAAGTTGAAATGG+AGG 0.616401 4_4:-15328135 Msa0671610:three_prime_UTR
CAGTAACGATGCAGTCACTA+GGG 0.618039 4_4:+15330876 None:intergenic
AATTGATGAGGAGAGAGGAG+AGG 0.619514 4_4:-15331477 Msa0671610:CDS
AACACCGACAAGAACAACCT+CGG 0.620932 4_4:+15333604 None:intergenic
AGTTTGGAGGTACACTTCCA+GGG 0.622562 4_4:+15331510 None:intergenic
CTAAAGAATGCTATGAAATG+CGG 0.626695 4_4:+15330853 None:intergenic
CCTACAATTGATGAGGAGAG+AGG 0.629217 4_4:-15331482 Msa0671610:CDS
GTGGGTAGTTAACTGTGTTG+GGG 0.629727 4_4:-15331204 Msa0671610:CDS
ATTGATGATTCTGCTTTGTG+GGG 0.631990 4_4:-15333571 Msa0671610:five_prime_UTR
CTGGAGGCCTACAATTGATG+AGG 0.643127 4_4:-15331489 Msa0671610:CDS
ACAGGAGACAGAATTAACAT+GGG 0.644781 4_4:-15328381 Msa0671610:three_prime_UTR
AGAGTGATCCATCTAATCAA+CGG 0.644934 4_4:-15331418 Msa0671610:CDS
TCACACTCAATGCGAAAGCG+AGG 0.648642 4_4:+15330692 None:intergenic
AGATGGACCACCATTGTGTG+TGG 0.658837 4_4:-15331223 Msa0671610:CDS
AGTTAACTACCCACACACAA+TGG 0.666889 4_4:+15331213 None:intergenic
GAAGTGTACCTCCAAACTGG+AGG 0.685237 4_4:-15331505 Msa0671610:CDS
GAACAATGATGGCATCGAGG+CGG 0.692188 4_4:+15331362 None:intergenic
TAACTACCCACACACAATGG+TGG 0.692891 4_4:+15331216 None:intergenic
ATGTGTTAAGTTGAAATGGA+GGG 0.701506 4_4:-15328134 Msa0671610:three_prime_UTR
CAGGAGACAGAATTAACATG+GGG 0.710211 4_4:-15328380 Msa0671610:three_prime_UTR
GATGGACCACCATTGTGTGT+GGG 0.716633 4_4:-15331222 Msa0671610:CDS
ACTTTGCATTGAGATCGAAG+TGG 0.716971 4_4:-15333522 Msa0671610:five_prime_UTR
ACTGAACAATGATGGCATCG+AGG 0.726860 4_4:+15331359 None:intergenic
CTGAAACAGAGTGAAAACCG+GGG 0.785419 4_4:+15328460 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTTCTTGTTTTATTTA+TGG - chr4_4:15330730-15330749 Msa0671610:intron 10.0%
!!! TGAATTTTGTTTGAAATTAA+TGG - chr4_4:15328638-15328657 Msa0671610:CDS 15.0%
!!! ATAATTTCATTCAGATTTTT+AGG - chr4_4:15332650-15332669 Msa0671610:intron 15.0%
!!! CATATTGATTTTTGATATAT+GGG - chr4_4:15332756-15332775 Msa0671610:intron 15.0%
!!! TTAAATGTTTTTGAAATAGT+TGG - chr4_4:15332963-15332982 Msa0671610:intron 15.0%
!! ATCATAAAAAAAATCATACT+AGG + chr4_4:15333534-15333553 None:intergenic 15.0%
!!! AGAAAATATTTTACAAATAC+TGG + chr4_4:15333736-15333755 None:intergenic 15.0%
!!! ATTTGAATTTGTTAGTGTTT+TGG - chr4_4:15328451-15328470 Msa0671610:three_prime_UTR 20.0%
!! ATAATTAGCGTAAAATAATG+AGG - chr4_4:15329046-15329065 Msa0671610:intron 20.0%
!! AAAAGAACAATTAGTTATCA+CGG - chr4_4:15329171-15329190 Msa0671610:intron 20.0%
!! AGAAAAAGCTAAAATGAAAT+GGG + chr4_4:15329333-15329352 None:intergenic 20.0%
!! AAGAAAAAGCTAAAATGAAA+TGG + chr4_4:15329334-15329353 None:intergenic 20.0%
!!! AACTTGATTTTATTCCTTTT+TGG - chr4_4:15330428-15330447 Msa0671610:intron 20.0%
!! CATTCATAAAAGTAATAACT+GGG + chr4_4:15330591-15330610 None:intergenic 20.0%
!! TCATTCATAAAAGTAATAAC+TGG + chr4_4:15330592-15330611 None:intergenic 20.0%
!! GTGTCAATAAAAAAAATACT+TGG - chr4_4:15330752-15330771 Msa0671610:intron 20.0%
!! TACAAAAAAGTTCATTTGTA+TGG + chr4_4:15331103-15331122 None:intergenic 20.0%
!!! ATGAACTTTTTTGTATTACT+TGG - chr4_4:15331108-15331127 Msa0671610:intron 20.0%
!!! TGAACTTTTTTGTATTACTT+GGG - chr4_4:15331109-15331128 Msa0671610:intron 20.0%
!! TATATGTTCTCTAATATGTA+TGG - chr4_4:15331814-15331833 Msa0671610:intron 20.0%
!!! GCATATTGATTTTTGATATA+TGG - chr4_4:15332755-15332774 Msa0671610:intron 20.0%
!! CAACATAAATCATTATGTAA+GGG + chr4_4:15333011-15333030 None:intergenic 20.0%
!!! TTTTTTATGATGTTACTTAG+AGG - chr4_4:15333543-15333562 Msa0671610:five_prime_UTR 20.0%
!! AATTGAATAGAAGAAAATGA+AGG + chr4_4:15333693-15333712 None:intergenic 20.0%
!!! AATTTGGGGATTTTGATTTT+TGG + chr4_4:15328025-15328044 None:intergenic 25.0%
!!! AATTTTTTTGATTGGGTCAT+GGG + chr4_4:15328073-15328092 None:intergenic 25.0%
!!! GAGCTAGAATTTTTTTGATT+GGG + chr4_4:15328080-15328099 None:intergenic 25.0%
!!! TCGATTATGATTTTGTTTGT+TGG - chr4_4:15328295-15328314 Msa0671610:three_prime_UTR 25.0%
! ATACAAAGAAGGAACATAAT+TGG + chr4_4:15328347-15328366 None:intergenic 25.0%
! TATGTTCCTTCTTTGTATAA+TGG - chr4_4:15328349-15328368 Msa0671610:three_prime_UTR 25.0%
!!! ATCTGTTTTTGATTTGTTTG+AGG - chr4_4:15328491-15328510 Msa0671610:three_prime_UTR 25.0%
! ATTTATAGGGTCTATTTGAT+GGG - chr4_4:15328578-15328597 Msa0671610:CDS 25.0%
! CAACTAATAAAAACTTCCAA+CGG + chr4_4:15328679-15328698 None:intergenic 25.0%
!! GTTGGAAGTTTTTATTAGTT+GGG - chr4_4:15328678-15328697 Msa0671610:intron 25.0%
!! TGATCTTGGTAACAAAATAA+CGG - chr4_4:15329275-15329294 Msa0671610:intron 25.0%
!!! TCTTTAAAGTTTTCATTAGC+TGG - chr4_4:15329304-15329323 Msa0671610:intron 25.0%
!!! CTTTAAAGTTTTCATTAGCT+GGG - chr4_4:15329305-15329324 Msa0671610:intron 25.0%
!! ATGTAGAATAATGAAGTGTT+GGG - chr4_4:15329370-15329389 Msa0671610:intron 25.0%
!!! TGAGACTAATTGTCATTTTT+CGG + chr4_4:15329418-15329437 None:intergenic 25.0%
!! AAAAATGACAATTAGTCTCA+AGG - chr4_4:15329418-15329437 Msa0671610:intron 25.0%
! AGGTGTTAAATATCTAATTG+AGG - chr4_4:15329482-15329501 Msa0671610:intron 25.0%
!!! AAAGACTGTTTTTTAAACCT+TGG - chr4_4:15329873-15329892 Msa0671610:intron 25.0%
! AAATGTGACACTACAAAAAA+CGG + chr4_4:15330398-15330417 None:intergenic 25.0%
! CGTTATAGTAATACTGATAT+TGG + chr4_4:15330701-15330720 None:intergenic 25.0%
! AACAACTTAAACTCAACTTA+GGG + chr4_4:15331490-15331509 None:intergenic 25.0%
! TGTAACAAACTTTCATTCAA+TGG + chr4_4:15332103-15332122 None:intergenic 25.0%
!!! AGTTTGTTACAAAATCTTAG+AGG - chr4_4:15332112-15332131 Msa0671610:intron 25.0%
!! AACTGTTATGAATTCAGTTT+TGG - chr4_4:15332187-15332206 Msa0671610:intron 25.0%
! ATCTACAAATTATGACATCT+TGG + chr4_4:15332306-15332325 None:intergenic 25.0%
! ATTAGCTACTTGGATTATTT+AGG + chr4_4:15332336-15332355 None:intergenic 25.0%
!!! TCATCATGCAATTTTATTTG+TGG - chr4_4:15332526-15332545 Msa0671610:intron 25.0%
!!! TTTTATTTGTGGAAAGACAA+TGG - chr4_4:15332537-15332556 Msa0671610:intron 25.0%
! AAGTAAAAACTAGTTCATGT+AGG + chr4_4:15332571-15332590 None:intergenic 25.0%
!! AACCATATTTTATGTTTCCA+TGG - chr4_4:15332788-15332807 Msa0671610:intron 25.0%
! TTCCATGGAAACATAAAATA+TGG + chr4_4:15332793-15332812 None:intergenic 25.0%
!!! AAATATTCCTACTTTTTCCA+TGG + chr4_4:15332808-15332827 None:intergenic 25.0%
!! GCTTTATATATCTAGGATAT+GGG + chr4_4:15332914-15332933 None:intergenic 25.0%
!! TGCTTTATATATCTAGGATA+TGG + chr4_4:15332915-15332934 None:intergenic 25.0%
! TGTTTGTGCTTTATATATCT+AGG + chr4_4:15332921-15332940 None:intergenic 25.0%
! GCAACATAAATCATTATGTA+AGG + chr4_4:15333012-15333031 None:intergenic 25.0%
!! TTCTTTGATATCAGGTTTTT+GGG - chr4_4:15333032-15333051 Msa0671610:intron 25.0%
!! GTGTACAAATCTTTAAAAAC+AGG - chr4_4:15333304-15333323 Msa0671610:CDS 25.0%
! GGAACAAATCTAACATTATA+AGG + chr4_4:15333650-15333669 None:intergenic 25.0%
TAGGGTTTATTGAGAATTTG+GGG + chr4_4:15328039-15328058 None:intergenic 30.0%
CTAGGGTTTATTGAGAATTT+GGG + chr4_4:15328040-15328059 None:intergenic 30.0%
! TCTAGGGTTTATTGAGAATT+TGG + chr4_4:15328041-15328060 None:intergenic 30.0%
!!! GAATTTTTTTGATTGGGTCA+TGG + chr4_4:15328074-15328093 None:intergenic 30.0%
!!! GGAGCTAGAATTTTTTTGAT+TGG + chr4_4:15328081-15328100 None:intergenic 30.0%
! AAATTGATGATTCTGCTTTG+TGG - chr4_4:15328130-15328149 Msa0671610:three_prime_UTR 30.0%
! AATTGATGATTCTGCTTTGT+GGG - chr4_4:15328131-15328150 Msa0671610:three_prime_UTR 30.0%
TGATTGATTATGCATAGATC+TGG - chr4_4:15328217-15328236 Msa0671610:three_prime_UTR 30.0%
! TTCCTTCTTTGTATAATGGA+GGG - chr4_4:15328353-15328372 Msa0671610:three_prime_UTR 30.0%
! TTTGATCTTGTTTCATGCTT+TGG - chr4_4:15328402-15328421 Msa0671610:three_prime_UTR 30.0%
!! TGATTTGTTTGAGGATGTTT+AGG - chr4_4:15328500-15328519 Msa0671610:three_prime_UTR 30.0%
!! AGAATTTAGCTTGTTGACTT+AGG - chr4_4:15328545-15328564 Msa0671610:exon 30.0%
!! GAATTTAGCTTGTTGACTTA+GGG - chr4_4:15328546-15328565 Msa0671610:exon 30.0%
TAGGGATCATGATGATTTAT+AGG - chr4_4:15328564-15328583 Msa0671610:CDS 30.0%
AGGGATCATGATGATTTATA+GGG - chr4_4:15328565-15328584 Msa0671610:CDS 30.0%
GATTTATAGGGTCTATTTGA+TGG - chr4_4:15328577-15328596 Msa0671610:CDS 30.0%
! CGTTGGAAGTTTTTATTAGT+TGG - chr4_4:15328677-15328696 Msa0671610:intron 30.0%
CAGCAAAAGCTAAAATCAAA+TGG + chr4_4:15328707-15328726 None:intergenic 30.0%
!!! TTGATTTTAGCTTTTGCTGT+CGG - chr4_4:15328708-15328727 Msa0671610:intron 30.0%
TCTTGGAAGTTATCATTAGT+TGG - chr4_4:15328974-15328993 Msa0671610:intron 30.0%
CTTGGAAGTTATCATTAGTT+GGG - chr4_4:15328975-15328994 Msa0671610:intron 30.0%
GTGTTAGATATCTACATTGA+TGG - chr4_4:15329068-15329087 Msa0671610:intron 30.0%
TTAGATATCTACATTGATGG+TGG - chr4_4:15329071-15329090 Msa0671610:intron 30.0%
GATGTAGAATAATGAAGTGT+TGG - chr4_4:15329369-15329388 Msa0671610:intron 30.0%
TGATGTTTATTCGAAAAACG+AGG - chr4_4:15329462-15329481 Msa0671610:intron 30.0%
AAAAGAACAAGTATCTCTGA+CGG - chr4_4:15329517-15329536 Msa0671610:intron 30.0%
AATGCAACTTTAAACCTTGA+CGG + chr4_4:15329649-15329668 None:intergenic 30.0%
!!! ACAGACTGTTTTTTAAACCT+TGG - chr4_4:15329915-15329934 Msa0671610:intron 30.0%
!!! GATTTTTAAAACAACTGCCA+AGG + chr4_4:15329935-15329954 None:intergenic 30.0%
!!! GTTTTAAAAATCCGAGTTAC+TGG - chr4_4:15329943-15329962 Msa0671610:intron 30.0%
AAACTTCAGAAGAAACACTT+AGG + chr4_4:15329994-15330013 None:intergenic 30.0%
TTAATGATGCGTTGTTTATC+TGG - chr4_4:15330075-15330094 Msa0671610:intron 30.0%
!!! TTCCTTTTTGGTTTGATATC+AGG - chr4_4:15330440-15330459 Msa0671610:intron 30.0%
!!! TTTTTGGTTTGATATCAGGT+GGG - chr4_4:15330444-15330463 Msa0671610:intron 30.0%
! CAAGTATTTCCTTCTTTTCT+TGG - chr4_4:15330532-15330551 Msa0671610:intron 30.0%
!! TAATTATTTCTGACTTGCGA+TGG - chr4_4:15330617-15330636 Msa0671610:intron 30.0%
! TCGTTTTACTTTAATGTCTC+AGG + chr4_4:15330665-15330684 None:intergenic 30.0%
!! GTAATACTGATATTGGTTCT+TGG + chr4_4:15330694-15330713 None:intergenic 30.0%
CTAAAGAATGCTATGAAATG+CGG + chr4_4:15330853-15330872 None:intergenic 30.0%
TTCATAGCATTCTTTAGTGA+TGG - chr4_4:15330856-15330875 Msa0671610:CDS 30.0%
GATGGAATACAAATCTAGAA+TGG + chr4_4:15330949-15330968 None:intergenic 30.0%
TTGTTACATAAACTCACAGA+TGG + chr4_4:15330967-15330986 None:intergenic 30.0%
GTGAGTTTATGTAACAATGT+TGG - chr4_4:15330970-15330989 Msa0671610:intron 30.0%
TCTGATTATGCACATATCAT+TGG - chr4_4:15331041-15331060 Msa0671610:intron 30.0%
ACTTATATGATAAGCACTTG+TGG + chr4_4:15331248-15331267 None:intergenic 30.0%
CAACAACTTAAACTCAACTT+AGG + chr4_4:15331491-15331510 None:intergenic 30.0%
! ATATGCTTTTCCATGTTGTA+TGG - chr4_4:15331622-15331641 Msa0671610:intron 30.0%
AGAAGAAAACTACTCCAAAA+TGG - chr4_4:15331708-15331727 Msa0671610:intron 30.0%
AGTAACTTAAGTATGCATTG+TGG - chr4_4:15331927-15331946 Msa0671610:intron 30.0%
GTAACTTAAGTATGCATTGT+GGG - chr4_4:15331928-15331947 Msa0671610:intron 30.0%
GAAATCTAATAAAAAGCAGC+AGG + chr4_4:15332002-15332021 None:intergenic 30.0%
GGAAGAGAACTAGATATTAT+TGG - chr4_4:15332733-15332752 Msa0671610:intron 30.0%
TATGTTTCCATGGAAAAAGT+AGG - chr4_4:15332798-15332817 Msa0671610:intron 30.0%
! TATGTTGCTTCTTTGATATC+AGG - chr4_4:15333024-15333043 Msa0671610:intron 30.0%
! CTTCTTTGATATCAGGTTTT+TGG - chr4_4:15333031-15333050 Msa0671610:intron 30.0%
ATATCTTCTTCTGAATAAGC+AGG + chr4_4:15333082-15333101 None:intergenic 30.0%
ATTCAGAAGAAGATATTCGA+AGG - chr4_4:15333086-15333105 Msa0671610:intron 30.0%
!! CTTATGGTTTTTCAGCTATT+GGG + chr4_4:15333161-15333180 None:intergenic 30.0%
CAATAGCTGAAAAACCATAA+GGG - chr4_4:15333160-15333179 Msa0671610:intron 30.0%
! AAAAACCATAAGGGCATATT+TGG - chr4_4:15333169-15333188 Msa0671610:intron 30.0%
TTAAACCAAATATGCCCTTA+TGG + chr4_4:15333177-15333196 None:intergenic 30.0%
TGTACACATCATGTAACAAA+AGG - chr4_4:15333420-15333439 Msa0671610:CDS 30.0%
TGTATGAGTGAGAAAGTAAA+GGG + chr4_4:15333462-15333481 None:intergenic 30.0%
TTGTATGAGTGAGAAAGTAA+AGG + chr4_4:15333463-15333482 None:intergenic 30.0%
!! ATGTGTTAAGTTGAAATGGA+GGG - chr4_4:15333569-15333588 Msa0671610:five_prime_UTR 30.0%
! TTCATTGACTAACAACTCAT+TGG + chr4_4:15333794-15333813 None:intergenic 30.0%
!! TCAAAAAAATTCTAGCTCCG+AGG - chr4_4:15328082-15328101 Msa0671610:three_prime_UTR 35.0%
! ATTGATGATTCTGCTTTGTG+GGG - chr4_4:15328132-15328151 Msa0671610:three_prime_UTR 35.0%
GTTCCTTCTTTGTATAATGG+AGG - chr4_4:15328352-15328371 Msa0671610:three_prime_UTR 35.0%
AACCCTCCATTATACAAAGA+AGG + chr4_4:15328358-15328377 None:intergenic 35.0%
TGATTCTCTTATTGCTGTCT+TGG - chr4_4:15328378-15328397 Msa0671610:three_prime_UTR 35.0%
GAGAATAATGATTGTTCCGT+TGG - chr4_4:15328660-15328679 Msa0671610:CDS 35.0%
AAAGTGAGAAGTAGTTGACA+AGG - chr4_4:15328788-15328807 Msa0671610:intron 35.0%
AAAAACGAGAAGTAGTTGTC+AGG - chr4_4:15328852-15328871 Msa0671610:intron 35.0%
AAAACGAGAAGTAGTTGTCA+GGG - chr4_4:15328853-15328872 Msa0671610:intron 35.0%
! CTCGATCTTGGTAACAATAA+TGG - chr4_4:15328945-15328964 Msa0671610:intron 35.0%
AACAATAATGGTTGCTCTCT+TGG - chr4_4:15328957-15328976 Msa0671610:intron 35.0%
! TTTTTGCCAGATTGTGAATG+CGG - chr4_4:15329017-15329036 Msa0671610:intron 35.0%
AAAATGACAAGTAGTCGTCA+AGG - chr4_4:15329713-15329732 Msa0671610:intron 35.0%
ACATAAAAAACCGTGACATC+TGG - chr4_4:15329836-15329855 Msa0671610:intron 35.0%
TAGTGATTAAACAACGACCA+AGG + chr4_4:15329893-15329912 None:intergenic 35.0%
AGAAACATCTTCCAGTAACT+CGG + chr4_4:15329957-15329976 None:intergenic 35.0%
TTTCCTCTTTATCATGCAGT+TGG - chr4_4:15330130-15330149 Msa0671610:intron 35.0%
TAACCAACTGCATGATAAAG+AGG + chr4_4:15330136-15330155 None:intergenic 35.0%
TCCAGGGTCAATAAAAACTA+CGG + chr4_4:15330180-15330199 None:intergenic 35.0%
AGAGTGATCCATCTAATCAA+CGG - chr4_4:15330285-15330304 Msa0671610:intron 35.0%
ACTCACAAACTGAACAATGA+TGG + chr4_4:15330355-15330374 None:intergenic 35.0%
CACCTGATATCAAACCAAAA+AGG + chr4_4:15330445-15330464 None:intergenic 35.0%
!!! CTTTTTGGTTTGATATCAGG+TGG - chr4_4:15330443-15330462 Msa0671610:intron 35.0%
GTGTTCATACCAAGAAAAGA+AGG + chr4_4:15330544-15330563 None:intergenic 35.0%
ACTTTAATGTCTCAGGAAGT+CGG + chr4_4:15330658-15330677 None:intergenic 35.0%
! GCTACAACTTTTCTTGCTTT+TGG - chr4_4:15330907-15330926 Msa0671610:intron 35.0%
!! CAACTTTTCTTGCTTTTGGT+AGG - chr4_4:15330911-15330930 Msa0671610:intron 35.0%
TGCTAATACAACCACTATTG+AGG - chr4_4:15331068-15331087 Msa0671610:intron 35.0%
GGAAAACTTTACCTCAATAG+TGG + chr4_4:15331082-15331101 None:intergenic 35.0%
TGAAAGTTGGATAAGGTGTA+GGG + chr4_4:15331145-15331164 None:intergenic 35.0%
CTAAATACTGCCATTCAACA+AGG + chr4_4:15331188-15331207 None:intergenic 35.0%
CTTGTTGAATGGCAGTATTT+AGG - chr4_4:15331186-15331205 Msa0671610:CDS 35.0%
TGTACGTTGTTTATGCAAAC+AGG + chr4_4:15331213-15331232 None:intergenic 35.0%
TAAGCTATCTAAGAGAGCTT+AGG + chr4_4:15331343-15331362 None:intergenic 35.0%
AAGCTCTCTTAGATAGCTTA+TGG - chr4_4:15331343-15331362 Msa0671610:intron 35.0%
AGGATACATTTCACTAGTTC+AGG + chr4_4:15331528-15331547 None:intergenic 35.0%
AAGCAAAAGTCCATACAACA+TGG + chr4_4:15331635-15331654 None:intergenic 35.0%
! TCGTCGGAAAAATTTTGAAC+AGG - chr4_4:15331745-15331764 Msa0671610:intron 35.0%
CTAGATTGTTGACACACAAT+GGG + chr4_4:15331861-15331880 None:intergenic 35.0%
AATCTAGGCACTAATGACTA+AGG - chr4_4:15331874-15331893 Msa0671610:intron 35.0%
AATAAAAAGCAGCAGGACAA+GGG + chr4_4:15331995-15332014 None:intergenic 35.0%
TAATAAAAAGCAGCAGGACA+AGG + chr4_4:15331996-15332015 None:intergenic 35.0%
ATAGCAATCCTAAGCTAACT+AGG - chr4_4:15332148-15332167 Msa0671610:intron 35.0%
!!! TTCAGTTTTGGACAGTTACA+AGG - chr4_4:15332199-15332218 Msa0671610:intron 35.0%
TTCAGCAAGTATTAGCTACT+TGG + chr4_4:15332346-15332365 None:intergenic 35.0%
GAAATGTCCAGTGTATGTTA+AGG - chr4_4:15332363-15332382 Msa0671610:intron 35.0%
GAAACTTCCTTAACATACAC+TGG + chr4_4:15332373-15332392 None:intergenic 35.0%
! CATGATGATGTATTAGACAC+TGG + chr4_4:15332514-15332533 None:intergenic 35.0%
TACAGCACAAGTTTACACAT+GGG + chr4_4:15332622-15332641 None:intergenic 35.0%
ATACAGCACAAGTTTACACA+TGG + chr4_4:15332623-15332642 None:intergenic 35.0%
!! TTGATATCAGGTTTTTGGGA+CGG - chr4_4:15333036-15333055 Msa0671610:intron 35.0%
!! CCTTATGGTTTTTCAGCTAT+TGG + chr4_4:15333162-15333181 None:intergenic 35.0%
CCAATAGCTGAAAAACCATA+AGG - chr4_4:15333159-15333178 Msa0671610:intron 35.0%
TTTATTTGCAAAACTGTCCC+CGG - chr4_4:15333226-15333245 Msa0671610:intron 35.0%
AACAGGAGACAGAATTAACA+TGG - chr4_4:15333321-15333340 Msa0671610:CDS 35.0%
ACAGGAGACAGAATTAACAT+GGG - chr4_4:15333322-15333341 Msa0671610:CDS 35.0%
ATGATGTGTACACTTCTGTT+TGG + chr4_4:15333412-15333431 None:intergenic 35.0%
CTTTCTCACTCATACAAATC+CGG - chr4_4:15333466-15333485 Msa0671610:CDS 35.0%
!! GTGCATGTGTTAAGTTGAAA+TGG - chr4_4:15333565-15333584 Msa0671610:five_prime_UTR 35.0%
!! CATGTGTTAAGTTGAAATGG+AGG - chr4_4:15333568-15333587 Msa0671610:five_prime_UTR 35.0%
GAAGAGAATTGCAATGCTTT+GGG + chr4_4:15333671-15333690 None:intergenic 35.0%
AGTGGAGAAGAAGATTGAAG+TGG + chr4_4:15328002-15328021 None:intergenic 40.0%
!!! GGGGATTTTGATTTTTGGAG+TGG + chr4_4:15328020-15328039 None:intergenic 40.0%
!! TCATGGGTTTGGTGAATCTA+GGG + chr4_4:15328057-15328076 None:intergenic 40.0%
!! TTTTGATTGGGTCATGGGTT+TGG + chr4_4:15328068-15328087 None:intergenic 40.0%
ACTTTGCATTGAGATCGAAG+TGG - chr4_4:15328181-15328200 Msa0671610:three_prime_UTR 40.0%
CTTTGCATTGAGATCGAAGT+GGG - chr4_4:15328182-15328201 Msa0671610:three_prime_UTR 40.0%
!! ATTGAGATCGAAGTGGGTTT+TGG - chr4_4:15328188-15328207 Msa0671610:three_prime_UTR 40.0%
TGGGTTTGAGTGTGATACTA+TGG - chr4_4:15328597-15328616 Msa0671610:CDS 40.0%
!! TTAGCTTTTGCTGTCGGATT+TGG - chr4_4:15328714-15328733 Msa0671610:intron 40.0%
! AAAAGTGCGAAGTAGTTGTC+AGG - chr4_4:15329101-15329120 Msa0671610:intron 40.0%
AAAGTGCGAAGTAGTTGTCA+GGG - chr4_4:15329102-15329121 Msa0671610:intron 40.0%
! TTCCACAAAATCAAGCATCG+TGG + chr4_4:15329226-15329245 None:intergenic 40.0%
! GGATGATTTTGTCGTGATCT+TGG - chr4_4:15329261-15329280 Msa0671610:intron 40.0%
! TTGGGCATCTTATTTGACGA+TGG - chr4_4:15329388-15329407 Msa0671610:intron 40.0%
AAAATGACAAGTAGCCGTCA+AGG - chr4_4:15329632-15329651 Msa0671610:intron 40.0%
AACATCTGTATGAGCTTGTG+TGG + chr4_4:15330019-15330038 None:intergenic 40.0%
TGCAGTTGGTTATGCTATTG+TGG - chr4_4:15330144-15330163 Msa0671610:intron 40.0%
! TCCGTAGTTTTTATTGACCC+TGG - chr4_4:15330176-15330195 Msa0671610:intron 40.0%
GAGAGGAAGATCCATTAGTT+GGG - chr4_4:15330243-15330262 Msa0671610:intron 40.0%
CTGAACTCTAACCCAACTAA+TGG + chr4_4:15330257-15330276 None:intergenic 40.0%
ATCCATCTAATCAACGGATC+CGG - chr4_4:15330291-15330310 Msa0671610:intron 40.0%
AGTTAACTACCCACACACAA+TGG + chr4_4:15330493-15330512 None:intergenic 40.0%
TGTGGGTAGTTAACTGTGTT+GGG - chr4_4:15330498-15330517 Msa0671610:intron 40.0%
! TTTAGTGATGGAGAAATCCC+TGG - chr4_4:15330868-15330887 Msa0671610:CDS 40.0%
AAAGTTGTAGCAAGAGAGCT+AGG + chr4_4:15330898-15330917 None:intergenic 40.0%
GAAAGTTGGATAAGGTGTAG+GGG + chr4_4:15331144-15331163 None:intergenic 40.0%
GTGAAAGTTGGATAAGGTGT+AGG + chr4_4:15331146-15331165 None:intergenic 40.0%
CTTCAGGTGAAAGTTGGATA+AGG + chr4_4:15331152-15331171 None:intergenic 40.0%
CAGTTTCTTCAGGTGAAAGT+TGG + chr4_4:15331158-15331177 None:intergenic 40.0%
AGGAGCAAAACAGTTTCTTC+AGG + chr4_4:15331168-15331187 None:intergenic 40.0%
! CTGTTTTGCTCCTTGTTGAA+TGG - chr4_4:15331175-15331194 Msa0671610:CDS 40.0%
AACTCAACTTAGGGACTGTT+TGG + chr4_4:15331481-15331500 None:intergenic 40.0%
AAATGTATCCTCTGTCACTG+AGG - chr4_4:15331537-15331556 Msa0671610:CDS 40.0%
! GGACTTTTGCTTATGTGAAG+TGG - chr4_4:15331643-15331662 Msa0671610:intron 40.0%
GTGAAGTGGATACTGATCAA+TGG - chr4_4:15331657-15331676 Msa0671610:intron 40.0%
! CCAAGATCATAACGCCATTT+TGG + chr4_4:15331725-15331744 None:intergenic 40.0%
CCAAAATGGCGTTATGATCT+TGG - chr4_4:15331722-15331741 Msa0671610:intron 40.0%
CCTAGATTGTTGACACACAA+TGG + chr4_4:15331862-15331881 None:intergenic 40.0%
CCATTGTGTGTCAACAATCT+AGG - chr4_4:15331859-15331878 Msa0671610:intron 40.0%
GCACTAATGACTAAGGAAAC+TGG - chr4_4:15331881-15331900 Msa0671610:intron 40.0%
GCATTGTGGGAAACAAAACT+TGG - chr4_4:15331941-15331960 Msa0671610:intron 40.0%
! TGACAGAACCTAGTTAGCTT+AGG + chr4_4:15332159-15332178 None:intergenic 40.0%
! TTGTGTCACTGTCAACATCT+CGG + chr4_4:15332439-15332458 None:intergenic 40.0%
TGACACAGACACATGTCATT+CGG + chr4_4:15332482-15332501 None:intergenic 40.0%
ACAGCACAAGTTTACACATG+GGG + chr4_4:15332621-15332640 None:intergenic 40.0%
TGACTCGATGTCTCTATGTT+AGG - chr4_4:15332712-15332731 Msa0671610:intron 40.0%
ACCTGAAACAGAGTGAAAAC+CGG + chr4_4:15333248-15333267 None:intergenic 40.0%
CAGGAGACAGAATTAACATG+GGG - chr4_4:15333323-15333342 Msa0671610:CDS 40.0%
! ATCCGGCTTGTAAGTAATTC+TGG - chr4_4:15333483-15333502 Msa0671610:exon 40.0%
! TCCGGCTTGTAAGTAATTCT+GGG - chr4_4:15333484-15333503 Msa0671610:exon 40.0%
GTTTGTGCAGATGAATTGCT+TGG + chr4_4:15333512-15333531 None:intergenic 40.0%
GTGTTAGGTTATGGTTTGAG+AGG - chr4_4:15333609-15333628 Msa0671610:five_prime_UTR 40.0%
GGAAGAGAATTGCAATGCTT+TGG + chr4_4:15333672-15333691 None:intergenic 40.0%
!! GTCATGGGTTTGGTGAATCT+AGG + chr4_4:15328058-15328077 None:intergenic 45.0%
AACACCGACAAGAACAACCT+CGG + chr4_4:15328102-15328121 None:intergenic 45.0%
AAGTTCTGCACAGCTTTACG+AGG - chr4_4:15328265-15328284 Msa0671610:three_prime_UTR 45.0%
! TTGCTGTCGGATTTGGAATG+CGG - chr4_4:15328721-15328740 Msa0671610:intron 45.0%
GAATGCGGCGTAGAAATAAG+AGG - chr4_4:15328736-15328755 Msa0671610:intron 45.0%
CGGCGTAGAAATAAGAGGTT+AGG - chr4_4:15328741-15328760 Msa0671610:intron 45.0%
TGTCACGATGCTTGACTTTG+TGG - chr4_4:15328893-15328912 Msa0671610:intron 45.0%
GTGGAAATTGCGATCAAGCA+CGG - chr4_4:15328912-15328931 Msa0671610:intron 45.0%
! GGATGACGTTTTCTCGATCT+TGG - chr4_4:15328933-15328952 Msa0671610:intron 45.0%
TTTACGCCGCATTCACAATC+TGG + chr4_4:15329026-15329045 None:intergenic 45.0%
! TGCCACGATGCTTGATTTTG+TGG - chr4_4:15329221-15329240 Msa0671610:intron 45.0%
! CATTTGTGCGCGATGCTTTT+TGG - chr4_4:15329608-15329627 Msa0671610:intron 45.0%
GCAGAAGTTGCGATCAAACA+TGG - chr4_4:15329782-15329801 Msa0671610:intron 45.0%
GTGATTGTGTCCAGATGTCA+CGG + chr4_4:15329849-15329868 None:intergenic 45.0%
! AGTTTGGAGGTACACTTCCA+GGG + chr4_4:15330196-15330215 None:intergenic 45.0%
TCAATTGTAGGCCTCCAGTT+TGG + chr4_4:15330212-15330231 None:intergenic 45.0%
CCTCTCTCCTCATCAATTGT+AGG + chr4_4:15330224-15330243 None:intergenic 45.0%
CCTACAATTGATGAGGAGAG+AGG - chr4_4:15330221-15330240 Msa0671610:intron 45.0%
AATTGATGAGGAGAGAGGAG+AGG - chr4_4:15330226-15330245 Msa0671610:intron 45.0%
GGAGAGGAAGATCCATTAGT+TGG - chr4_4:15330242-15330261 Msa0671610:intron 45.0%
! TACCGGATCCGTTGATTAGA+TGG + chr4_4:15330296-15330315 None:intergenic 45.0%
ATCAACGGATCCGGTATTGT+AGG - chr4_4:15330300-15330319 Msa0671610:intron 45.0%
GGTTGCACTTCCTACAATAC+CGG + chr4_4:15330313-15330332 None:intergenic 45.0%
ACTGAACAATGATGGCATCG+AGG + chr4_4:15330347-15330366 None:intergenic 45.0%
TAACTACCCACACACAATGG+TGG + chr4_4:15330490-15330509 None:intergenic 45.0%
GTGTGGGTAGTTAACTGTGT+TGG - chr4_4:15330497-15330516 Msa0671610:intron 45.0%
GTGGGTAGTTAACTGTGTTG+GGG - chr4_4:15330499-15330518 Msa0671610:intron 45.0%
CAGTAACGATGCAGTCACTA+GGG + chr4_4:15330830-15330849 None:intergenic 45.0%
AAAGCGAGGTTCAAAACTGC+AGG + chr4_4:15331000-15331019 None:intergenic 45.0%
GCTTTCGCATTGAGTGTGAT+GGG - chr4_4:15331015-15331034 Msa0671610:intron 45.0%
CAACTTAGGGACTGTTTGGA+TGG + chr4_4:15331477-15331496 None:intergenic 45.0%
AGCATTTACCTCAGTGACAG+AGG + chr4_4:15331548-15331567 None:intergenic 45.0%
! GTTTGCTCTTTGTTGTGAGC+AGG - chr4_4:15331679-15331698 Msa0671610:intron 45.0%
ACATGTGTCTGTGTCAGCTT+AGG - chr4_4:15332486-15332505 Msa0671610:intron 45.0%
TTTACACATGGGGGAAACGA+GGG + chr4_4:15332611-15332630 None:intergenic 45.0%
CAGCACAAGTTTACACATGG+GGG + chr4_4:15332620-15332639 None:intergenic 45.0%
TCACATCTGCAGAAAGAGTC+TGG + chr4_4:15332676-15332695 None:intergenic 45.0%
TTGGGACGGACAAGAAATAC+TGG - chr4_4:15333050-15333069 Msa0671610:intron 45.0%
!! GAATCGAAGTCGGGTTTTGA+TGG + chr4_4:15333139-15333158 None:intergenic 45.0%
AGCTATTGGGAATCGAAGTC+GGG + chr4_4:15333148-15333167 None:intergenic 45.0%
CAGCTATTGGGAATCGAAGT+CGG + chr4_4:15333149-15333168 None:intergenic 45.0%
CTGAAACAGAGTGAAAACCG+GGG + chr4_4:15333246-15333265 None:intergenic 45.0%
CCTGAAACAGAGTGAAAACC+GGG + chr4_4:15333247-15333266 None:intergenic 45.0%
GCCCAGAATTACTTACAAGC+CGG + chr4_4:15333488-15333507 None:intergenic 45.0%
AAATGGAGGGAGCAATGAGA+GGG - chr4_4:15333582-15333601 Msa0671610:five_prime_UTR 45.0%
AGCTCCGAGGTTGTTCTTGT+CGG - chr4_4:15328095-15328114 Msa0671610:three_prime_UTR 50.0%
! GCATAGATCTGGAGCTACGA+TGG - chr4_4:15328228-15328247 Msa0671610:three_prime_UTR 50.0%
TGCACAGCTTTACGAGGACT+TGG - chr4_4:15328271-15328290 Msa0671610:three_prime_UTR 50.0%
TTGTCAGGGTAGTTGTGTCG+CGG - chr4_4:15328867-15328886 Msa0671610:intron 50.0%
GTGGAAGTTGCGATCAAGCA+TGG - chr4_4:15329240-15329259 Msa0671610:intron 50.0%
TGGATGATGCAGTCACGATG+CGG - chr4_4:15329802-15329821 Msa0671610:intron 50.0%
! CAGTTTGGAGGTACACTTCC+AGG + chr4_4:15330197-15330216 None:intergenic 50.0%
! CTGGAAGTGTACCTCCAAAC+TGG - chr4_4:15330195-15330214 Msa0671610:intron 50.0%
GAAGTGTACCTCCAAACTGG+AGG - chr4_4:15330198-15330217 Msa0671610:intron 50.0%
ATTGTAGGCCTCCAGTTTGG+AGG + chr4_4:15330209-15330228 None:intergenic 50.0%
CTGGAGGCCTACAATTGATG+AGG - chr4_4:15330214-15330233 Msa0671610:intron 50.0%
! GAACAATGATGGCATCGAGG+CGG + chr4_4:15330344-15330363 None:intergenic 50.0%
AGATGGACCACCATTGTGTG+TGG - chr4_4:15330480-15330499 Msa0671610:intron 50.0%
GATGGACCACCATTGTGTGT+GGG - chr4_4:15330481-15330500 Msa0671610:intron 50.0%
GCAGTAACGATGCAGTCACT+AGG + chr4_4:15330831-15330850 None:intergenic 50.0%
CAAGAGAGCTAGGTGTTCCA+GGG + chr4_4:15330888-15330907 None:intergenic 50.0%
TCACACTCAATGCGAAAGCG+AGG + chr4_4:15331014-15331033 None:intergenic 50.0%
CGCTTTCGCATTGAGTGTGA+TGG - chr4_4:15331014-15331033 Msa0671610:intron 50.0%
GGCGTTATGATCTTGGTCGT+CGG - chr4_4:15331729-15331748 Msa0671610:intron 50.0%
GTTTACACATGGGGGAAACG+AGG + chr4_4:15332612-15332631 None:intergenic 50.0%
TACTCGAGACCTTGTAGAGC+TGG + chr4_4:15333115-15333134 None:intergenic 50.0%
! CCCGGTTTTCACTCTGTTTC+AGG - chr4_4:15333244-15333263 Msa0671610:intron 50.0%
GAAATGGAGGGAGCAATGAG+AGG - chr4_4:15333581-15333600 Msa0671610:five_prime_UTR 50.0%
AATGGAGGGAGCAATGAGAG+GGG - chr4_4:15333583-15333602 Msa0671610:five_prime_UTR 50.0%
!! CAATGAGAGGGGGAAGTGTT+AGG - chr4_4:15333594-15333613 Msa0671610:five_prime_UTR 50.0%
!! GAGGGGGAAGTGTTAGGTTA+TGG - chr4_4:15333600-15333619 Msa0671610:five_prime_UTR 50.0%
! GATCTGGAGCTACGATGGCA+TGG - chr4_4:15328233-15328252 Msa0671610:three_prime_UTR 55.0%
ATGCAGTCACGATGCGGTCA+TGG - chr4_4:15329808-15329827 Msa0671610:intron 55.0%
TGGGCGATGTGTGCTGAAGA+TGG - chr4_4:15330463-15330482 Msa0671610:intron 55.0%
CAGTCACTAGGGACGTCTCA+AGG + chr4_4:15330819-15330838 None:intergenic 55.0%
GCAAGAGAGCTAGGTGTTCC+AGG + chr4_4:15330889-15330908 None:intergenic 55.0%
!! CTCGGTGTCAGTGTCTCGTT+TGG + chr4_4:15332421-15332440 None:intergenic 55.0%
CGAAGGATGCCAGCTCTACA+AGG - chr4_4:15333103-15333122 Msa0671610:intron 55.0%
ATGGAGGGAGCAATGAGAGG+GGG - chr4_4:15333584-15333603 Msa0671610:five_prime_UTR 55.0%
CAGTCACGATGCGGTCATGG+TGG - chr4_4:15329811-15329830 Msa0671610:intron 60.0%
ACACATGGGGGAAACGAGGG+TGG + chr4_4:15332608-15332627 None:intergenic 60.0%
! GGCATCGAGGCGGCTTGAGC+TGG + chr4_4:15330334-15330353 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 15327898 15333827 15327898 ID=Msa0671610;Name=Msa0671610
chr4_4 mRNA 15327898 15333827 15327898 ID=Msa0671610-mRNA-1;Parent=Msa0671610;Name=Msa0671610-mRNA-1;_AED=0.09;_eAED=0.09;_QI=328|1|1|1|1|1|7|662|301
chr4_4 exon 15327898 15328679 15327898 ID=Msa0671610-mRNA-1:exon:4622;Parent=Msa0671610-mRNA-1
chr4_4 exon 15329959 15330024 15329959 ID=Msa0671610-mRNA-1:exon:4621;Parent=Msa0671610-mRNA-1
chr4_4 exon 15330636 15330721 15330636 ID=Msa0671610-mRNA-1:exon:4620;Parent=Msa0671610-mRNA-1
chr4_4 exon 15330797 15330920 15330797 ID=Msa0671610-mRNA-1:exon:4619;Parent=Msa0671610-mRNA-1
chr4_4 exon 15331172 15331263 15331172 ID=Msa0671610-mRNA-1:exon:4618;Parent=Msa0671610-mRNA-1
chr4_4 exon 15331357 15331576 15331357 ID=Msa0671610-mRNA-1:exon:4617;Parent=Msa0671610-mRNA-1
chr4_4 exon 15333302 15333827 15333302 ID=Msa0671610-mRNA-1:exon:4616;Parent=Msa0671610-mRNA-1
chr4_4 five_prime_UTR 15333500 15333827 15333500 ID=Msa0671610-mRNA-1:five_prime_utr;Parent=Msa0671610-mRNA-1
chr4_4 CDS 15333302 15333499 15333302 ID=Msa0671610-mRNA-1:cds;Parent=Msa0671610-mRNA-1
chr4_4 CDS 15331357 15331576 15331357 ID=Msa0671610-mRNA-1:cds;Parent=Msa0671610-mRNA-1
chr4_4 CDS 15331172 15331263 15331172 ID=Msa0671610-mRNA-1:cds;Parent=Msa0671610-mRNA-1
chr4_4 CDS 15330797 15330920 15330797 ID=Msa0671610-mRNA-1:cds;Parent=Msa0671610-mRNA-1
chr4_4 CDS 15330636 15330721 15330636 ID=Msa0671610-mRNA-1:cds;Parent=Msa0671610-mRNA-1
chr4_4 CDS 15329959 15330024 15329959 ID=Msa0671610-mRNA-1:cds;Parent=Msa0671610-mRNA-1
chr4_4 CDS 15328560 15328679 15328560 ID=Msa0671610-mRNA-1:cds;Parent=Msa0671610-mRNA-1
chr4_4 three_prime_UTR 15327898 15328559 15327898 ID=Msa0671610-mRNA-1:three_prime_utr;Parent=Msa0671610-mRNA-1
Gene Sequence

>Msa0671610

ATGCATAGATCTGGAGCTACGATGGCATGGAACGTGTTCAAGTTCTGCACAGCTTTACGAGGACTTGGTTCGATTATGATTTTGTTTGTTGGTGTTACTTATTATGCTGTTGTTATTACCAATTATGTTCCTTCTTTGTATAATGGAGGGTTTGATTCTCTTATTGCTGTCTTGGTTTTGATCTTGTTTCATGCTTTGTTGGTTATGCTATTGTGGAGTTATTTTTCCGTAGTTTTTATTGACCCTGGAAGTGTACCTCCAAACTGGAGGCCTACAATTGATGAGGAGAGAGGAGAGGAAGATCCATTAGTTGGGTTAGAGTTCAGTAACATGCAGAGTGATCCATCTAATCAACGGATCCGGTATTGTAGGAAGTGCAACCAGCTCAAGCCGCCTCGATGCCATCATTGTTCAGTTTGTGGGCGATGTGTGCTGAAGATGGACCACCATTGTGTGTGGGTAGTTAACTGTGTTGGGGCTCTAAATTACAAGTATTTCCTTCTTTTCTTGTTTTATACTTTCCTTGAGACGTCCCTAGTGACTGCATCGTTACTGCCGCATTTCATAGCATTCTTTAGTGATGGAGAAATCCCTGGAACACCTAGCTCTCTTGCTACAACTTTTCTTGCTTTTGTTTTGAACCTCGCTTTCGCATTGAGTGTGATGGGATTTCTGATTATGCACATATCATTGGTTGCTGCTAATACAACCACTATTGAGGCATATGAGAAGAAAACTACTCCAAAATGGCGTTATGATCTTGGTCGTCGGAAAAATTTTGAACAGGTTTTTGGGACGGACAAGAAATACTGGTTCATTCCTGCTTATTCAGAAGAAGATATTCGAAGGATGCCAGCTCTACAAGGTCTCGAGTATCCATCAAAACCCGACTTCGATTCCCAATAG

Protein sequence

>Msa0671610

MHRSGATMAWNVFKFCTALRGLGSIMILFVGVTYYAVVITNYVPSLYNGGFDSLIAVLVLILFHALLVMLLWSYFSVVFIDPGSVPPNWRPTIDEERGEEDPLVGLEFSNMQSDPSNQRIRYCRKCNQLKPPRCHHCSVCGRCVLKMDHHCVWVVNCVGALNYKYFLLFLFYTFLETSLVTASLLPHFIAFFSDGEIPGTPSSLATTFLAFVLNLAFALSVMGFLIMHISLVAANTTTIEAYEKKTTPKWRYDLGRRKNFEQVFGTDKKYWFIPAYSEEDIRRMPALQGLEYPSKPDFDSQ*