AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1220260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1220260 MtrunA17_Chr4g0071331 90.206 388 28 3 1 388 1 378 0.0 716
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 103 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCTTTGGCCTCGTTCTTA+TGG 0.166432 8_1:-83326670 Msa1220260:CDS
ATCTTTGGCCTCGTTCTTAT+GGG 0.226475 8_1:-83326669 Msa1220260:CDS
ATTCGCCCTGCTGACGTTAA+TGG 0.233739 8_1:-83326610 Msa1220260:intron
TTGAAGCATTTCAGACTAAA+AGG 0.234226 8_1:-83329030 Msa1220260:CDS
CTCAATTTCTCCTCCCTTGA+AGG 0.247560 8_1:+83325365 None:intergenic
AGGATATGGAAGATTAATTT+AGG 0.272587 8_1:+83329538 None:intergenic
ATCTTACAGGGGAGCATCTT+TGG 0.274682 8_1:-83326684 Msa1220260:intron
CTTCAAAGGGGAATAGTAAT+TGG 0.307261 8_1:+83329047 None:intergenic
TACACGCAGTATCAACTTTC+CGG 0.310484 8_1:-83329388 Msa1220260:CDS
ATGTACATGGCAGTCTGTTA+TGG 0.311136 8_1:-83325944 Msa1220260:CDS
GTGGTTGTCATCATGCTTTA+AGG 0.314766 8_1:+83329491 None:intergenic
CACTGAGAGTTGTTCCAAAA+TGG 0.332819 8_1:-83328342 Msa1220260:CDS
TACTATGGGGAATGCATAAC+TGG 0.334191 8_1:-83326496 Msa1220260:CDS
TCAAGGGGAAACAAGTACTA+TGG 0.338462 8_1:-83326511 Msa1220260:CDS
CGGAGTATGTGAATCTTATA+TGG 0.339164 8_1:-83325286 Msa1220260:CDS
TGTACATGGCAGTCTGTTAT+GGG 0.367519 8_1:-83325943 Msa1220260:CDS
GTCCAAAGCAGCTTCTTTGT+TGG 0.368366 8_1:+83326450 None:intergenic
TGATAGACCAGAAGCTTCAT+TGG 0.369693 8_1:-83328521 Msa1220260:CDS
CCCCTTCAAGATGAAGGATA+TGG 0.377793 8_1:+83329524 None:intergenic
TGCTTTCCACATTATTAGAA+TGG 0.377837 8_1:-83325403 Msa1220260:CDS
GTTGGCTGGTCTAAGACATT+TGG 0.386468 8_1:+83326468 None:intergenic
GAAACTGGAAACGGAGGATT+AGG 0.388918 8_1:+83329335 None:intergenic
TACATTCCCAATGAAGCTTC+TGG 0.389428 8_1:+83328514 None:intergenic
TTAAAATAACCTCAGGTTAG+AGG 0.392590 8_1:-83325986 Msa1220260:intron
TTCCATATCCTTCATCTTGA+AGG 0.393402 8_1:-83329526 Msa1220260:five_prime_UTR
ACAGGTGTGGGATGCTCTTA+AGG 0.395646 8_1:-83328563 Msa1220260:intron
TCAAACCGCCACTACTTGTC+GGG 0.402780 8_1:-83329440 Msa1220260:CDS
AAAGCAGCTTCTTTGTTGGC+TGG 0.406826 8_1:+83326454 None:intergenic
CCCTTACCATTAACGTCAGC+AGG 0.409584 8_1:+83326604 None:intergenic
TGGTGAATGTTGTTAGAAAC+TGG 0.410462 8_1:+83329320 None:intergenic
AGCCAACAAAGAAGCTGCTT+TGG 0.410602 8_1:-83326452 Msa1220260:CDS
GGAAGATTAATTTAGGAAGA+AGG 0.411065 8_1:+83329545 None:intergenic
GGAAGAAGGAGAAGAAGATT+CGG 0.418017 8_1:+83329559 None:intergenic
CAACTTTCCGGCGCGGCGGT+TGG 0.421785 8_1:-83329376 Msa1220260:CDS
TCCTCACATGCATAAGTAGA+AGG 0.433646 8_1:+83329075 None:intergenic
TTAGTCTGAAATGCTTCAAA+GGG 0.436352 8_1:+83329034 None:intergenic
GACATAAATATGACCTGCTT+GGG 0.442801 8_1:+83326397 None:intergenic
GACTTACTATTCCATCCCTC+TGG 0.443630 8_1:+83328307 None:intergenic
CGACATAAATATGACCTGCT+TGG 0.447621 8_1:+83326396 None:intergenic
GTTGTTCCAAAATGGCTATC+AGG 0.449836 8_1:-83328334 Msa1220260:CDS
CCTGGACTTCCTCCTGGTTG+TGG 0.461803 8_1:+83325917 None:intergenic
CAGTCTAACCTACCAACATT+TGG 0.463000 8_1:+83325875 None:intergenic
TTTAGTCTGAAATGCTTCAA+AGG 0.471185 8_1:+83329033 None:intergenic
TTCAAACCGCCACTACTTGT+CGG 0.475885 8_1:-83329441 Msa1220260:CDS
AATAAAGACAAATTAATGTT+CGG 0.478502 8_1:+83325106 None:intergenic
ATGAAGTAGATCCACCTTCA+AGG 0.498181 8_1:-83325379 Msa1220260:CDS
TTCATTCCATTCTAATAATG+TGG 0.499048 8_1:+83325397 None:intergenic
GATAGACCAGAAGCTTCATT+GGG 0.499403 8_1:-83328520 Msa1220260:CDS
CAAGGGGAAACAAGTACTAT+GGG 0.502340 8_1:-83326510 Msa1220260:CDS
GAGGTGGGCACCGCCCAAGC+AGG 0.503320 8_1:-83326410 Msa1220260:intron
AATTTCTCCTCCCTTGAAGG+TGG 0.505594 8_1:+83325368 None:intergenic
TCCATATCCTTCATCTTGAA+GGG 0.506275 8_1:-83329525 Msa1220260:five_prime_UTR
GTGTCTGAAAGGCGAAGACC+TGG 0.511249 8_1:+83325899 None:intergenic
CATCATGCTTTAAGGTGTGT+TGG 0.511315 8_1:+83329499 None:intergenic
TTGTGCAAATCAGTCAAAGA+TGG 0.511899 8_1:+83326634 None:intergenic
CATGCATAAGTAGAAGGAGT+TGG 0.513697 8_1:+83329081 None:intergenic
CGAAGACCTGGACTTCCTCC+TGG 0.513786 8_1:+83325911 None:intergenic
TTTCTAACAACATTCACCAT+TGG 0.514282 8_1:-83329316 Msa1220260:intron
ATTGCAGAAAACGGAGAGAT+GGG 0.521782 8_1:-83325428 Msa1220260:intron
TATTGCAGAAAACGGAGAGA+TGG 0.533665 8_1:-83325429 Msa1220260:intron
CATATAAGATTCACATACTC+CGG 0.541628 8_1:+83325287 None:intergenic
TACTCCGGATGATCAACAAA+AGG 0.542530 8_1:+83325302 None:intergenic
CCACAACCAGGAGGAAGTCC+AGG 0.543045 8_1:-83325917 Msa1220260:CDS
TGTTATGGGTTTCCACAACC+AGG 0.543802 8_1:-83325929 Msa1220260:CDS
CTGAAGCAGACAAGAGGAGG+TGG 0.545836 8_1:-83326426 Msa1220260:CDS
GGATAATCCAACCGCCGCGC+CGG 0.551390 8_1:+83329369 None:intergenic
CTTTCAGACACTCCAAATGT+TGG 0.551941 8_1:-83325887 Msa1220260:intron
CAACATTTGGAGTGTCTGAA+AGG 0.554647 8_1:+83325888 None:intergenic
ATAAATATGACCTGCTTGGG+CGG 0.571462 8_1:+83326400 None:intergenic
GAGGATTAGGACGGCTTGCA+CGG 0.571755 8_1:+83329348 None:intergenic
TCCTTCTACTTATGCATGTG+AGG 0.574535 8_1:-83329076 Msa1220260:CDS
GAACTGTTCCCGACAAGTAG+TGG 0.580457 8_1:+83329432 None:intergenic
TGAAGTAGATCCACCTTCAA+GGG 0.586411 8_1:-83325378 Msa1220260:CDS
TGCGAGGGCATTAATGTACA+TGG 0.587413 8_1:-83325957 Msa1220260:CDS
CCATATCCTTCATCTTGAAG+GGG 0.596138 8_1:-83329524 Msa1220260:five_prime_UTR
AGAAGGAGTTGGATATTCAG+AGG 0.600784 8_1:+83329092 None:intergenic
AACATGAATGACCTCTTGGT+AGG 0.607659 8_1:+83328954 None:intergenic
TGAATGATGTGGAGCAATGA+CGG 0.616592 8_1:+83328981 None:intergenic
TTGGTGCCCCTTCAAGATGA+AGG 0.626864 8_1:+83329518 None:intergenic
GGGACTCAATGGAACAAATG+TGG 0.631529 8_1:-83329203 Msa1220260:CDS
TGGACACTGAAGCAGACAAG+AGG 0.636703 8_1:-83326432 Msa1220260:CDS
TGGTAGGACAATGAATGATG+TGG 0.641618 8_1:+83328970 None:intergenic
TATCAGGAAAACCAGAGGGA+TGG 0.641822 8_1:-83328318 Msa1220260:CDS
TCATTCATTGTCCTACCAAG+AGG 0.643823 8_1:-83328965 Msa1220260:intron
AGGTTAGAGGAGATATTGCG+AGG 0.646892 8_1:-83325973 Msa1220260:CDS
ACACTGAAGCAGACAAGAGG+AGG 0.651465 8_1:-83326429 Msa1220260:CDS
TGAAGCAGACAAGAGGAGGT+GGG 0.657080 8_1:-83326425 Msa1220260:CDS
GGTTAGAGGAGATATTGCGA+GGG 0.660097 8_1:-83325972 Msa1220260:CDS
TAGTCTGAAATGCTTCAAAG+GGG 0.662090 8_1:+83329035 None:intergenic
GGGGAGTATCAAGTGACTTG+TGG 0.662339 8_1:+83329472 None:intergenic
ATGTTGTTAGAAACTGGAAA+CGG 0.664250 8_1:+83329326 None:intergenic
TTGTTAGAAACTGGAAACGG+AGG 0.667555 8_1:+83329329 None:intergenic
TGGCTATCAGGAAAACCAGA+GGG 0.668240 8_1:-83328322 Msa1220260:CDS
AGTAGATCCACCTTCAAGGG+AGG 0.669378 8_1:-83325375 Msa1220260:CDS
CTGTTCCCGACAAGTAGTGG+CGG 0.672425 8_1:+83329435 None:intergenic
GTATCAACTTTCCGGCGCGG+CGG 0.674326 8_1:-83329380 Msa1220260:CDS
CTGGAAACGGAGGATTAGGA+CGG 0.677054 8_1:+83329339 None:intergenic
CCTTACCATTAACGTCAGCA+GGG 0.678653 8_1:+83326605 None:intergenic
ATGGCTATCAGGAAAACCAG+AGG 0.697894 8_1:-83328323 Msa1220260:CDS
AAGGGGAAACAAGTACTATG+GGG 0.708705 8_1:-83326509 Msa1220260:CDS
TATGGGTTTCCACAACCAGG+AGG 0.721276 8_1:-83325926 Msa1220260:CDS
GCAGTATCAACTTTCCGGCG+CGG 0.745739 8_1:-83329383 Msa1220260:CDS
GTTGTCAGCCCATAAGAACG+AGG 0.754084 8_1:+83326661 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATAAAAAACATATATCA+GGG + chr8_1:83328921-83328940 None:intergenic 10.0%
!! TATTATAAAAAACATATATC+AGG + chr8_1:83328922-83328941 None:intergenic 10.0%
!! ATTAAATTAAAGAATTTAGA+AGG + chr8_1:83329097-83329116 None:intergenic 10.0%
!! ATTAGAATGAGAAAAAAAAA+AGG + chr8_1:83325338-83325357 None:intergenic 15.0%
!!! TACCTATTATTTCAATTTTT+AGG - chr8_1:83325398-83325417 Msa1220260:CDS 15.0%
!!! ACCTATTATTTCAATTTTTA+GGG - chr8_1:83325399-83325418 Msa1220260:CDS 15.0%
!! TAAACTGATATATAAATAAG+AGG + chr8_1:83327891-83327910 None:intergenic 15.0%
!!! ATATTGTTTTATGTTGAAAA+AGG - chr8_1:83329008-83329027 Msa1220260:CDS 15.0%
!! TTAAAAATGTGTAATGAAAA+CGG + chr8_1:83329479-83329498 None:intergenic 15.0%
!! AATAAAGACAAATTAATGTT+CGG + chr8_1:83329519-83329538 None:intergenic 15.0%
!! TCCCTAAAAATTGAAATAAT+AGG + chr8_1:83325403-83325422 None:intergenic 20.0%
!!! GATTTTGTTTTTGTAATAAC+AGG - chr8_1:83326041-83326060 Msa1220260:intron 20.0%
!! TAATTGGAATTTGTAACAAA+AGG - chr8_1:83326449-83326468 Msa1220260:CDS 20.0%
!! AATTGGAATTTGTAACAAAA+GGG - chr8_1:83326450-83326469 Msa1220260:CDS 20.0%
!! TGATAGAAATTAATAGGAAT+TGG - chr8_1:83326928-83326947 Msa1220260:intron 20.0%
!! TAGATTCAATTCTTATCAAT+TGG + chr8_1:83327748-83327767 None:intergenic 20.0%
!!! TTTTGGATAAGAACTTATAT+GGG + chr8_1:83327839-83327858 None:intergenic 20.0%
!! TGATATATAAATAAGAGGAA+AGG + chr8_1:83327886-83327905 None:intergenic 20.0%
!! TTATGTAATTGTATCTTACA+GGG - chr8_1:83327926-83327945 Msa1220260:intron 20.0%
!! TATTAATCTTGCTTCTTATT+TGG - chr8_1:83328863-83328882 Msa1220260:intron 20.0%
!! TAAATCTTTATTGCAGAAAA+CGG - chr8_1:83329185-83329204 Msa1220260:CDS 20.0%
!!! GTAAATTTTATCAGCATAAT+CGG - chr8_1:83329294-83329313 Msa1220260:intron 20.0%
!!! TAATTTTTTTTCTTCTTCGT+TGG + chr8_1:83329417-83329436 None:intergenic 20.0%
!! AACGAAGAAGAAAAAAAATT+AGG - chr8_1:83329416-83329435 Msa1220260:CDS 20.0%
! AGGATATGGAAGATTAATTT+AGG + chr8_1:83325087-83325106 None:intergenic 25.0%
! AATGAGAAAAAAAAAAGGCA+CGG + chr8_1:83325333-83325352 None:intergenic 25.0%
!!! TAACTTGTTTTCATTTCTCA+TGG - chr8_1:83325443-83325462 Msa1220260:intron 25.0%
! AGTATGCTACAAAAAAAAAG+AGG + chr8_1:83326418-83326437 None:intergenic 25.0%
! TTAACAGTTTCTGAACTTAA+AGG - chr8_1:83326758-83326777 Msa1220260:intron 25.0%
! TTCTGAACTTAAAGGAAATT+AGG - chr8_1:83326766-83326785 Msa1220260:intron 25.0%
!! TTTTAGCGGTATTAATGTTA+AGG - chr8_1:83326866-83326885 Msa1220260:intron 25.0%
! AAGTTTACAAGTAAGAAGAA+AGG + chr8_1:83327078-83327097 None:intergenic 25.0%
!!! TTCAAAGTGAAGGTTTTTTA+GGG + chr8_1:83327155-83327174 None:intergenic 25.0%
! TTCTTATCAATTGGTATCAA+AGG + chr8_1:83327739-83327758 None:intergenic 25.0%
! TAGAAATGTAAAAAAACACC+AGG + chr8_1:83327782-83327801 None:intergenic 25.0%
! TTACATTTCTATTACATCCT+TGG - chr8_1:83327791-83327810 Msa1220260:intron 25.0%
!!! GTTTTGGATAAGAACTTATA+TGG + chr8_1:83327840-83327859 None:intergenic 25.0%
! AAATAAGAGGAAAGGAAAAT+TGG + chr8_1:83327878-83327897 None:intergenic 25.0%
! CTTATGTAATTGTATCTTAC+AGG - chr8_1:83327925-83327944 Msa1220260:intron 25.0%
! TATGTAATTGTATCTTACAG+GGG - chr8_1:83327927-83327946 Msa1220260:intron 25.0%
!! TTTTCCCAACATTACAATTT+TGG - chr8_1:83328057-83328076 Msa1220260:intron 25.0%
! TCAACCAAAATTGTAATGTT+GGG + chr8_1:83328064-83328083 None:intergenic 25.0%
! ATCAACCAAAATTGTAATGT+TGG + chr8_1:83328065-83328084 None:intergenic 25.0%
! ATGACAATCAGAAACAAAAA+TGG + chr8_1:83328253-83328272 None:intergenic 25.0%
! ATGATCAGCAATCAATTAAA+AGG + chr8_1:83328284-83328303 None:intergenic 25.0%
! TTATCTGAGCTATTATAGTT+AGG - chr8_1:83328348-83328367 Msa1220260:CDS 25.0%
! GAGATAAAATCTTAATGTCA+TGG + chr8_1:83328422-83328441 None:intergenic 25.0%
!!! ACAACTGATATTAATTTGCA+AGG + chr8_1:83328473-83328492 None:intergenic 25.0%
! ACTTGAAAAAAGAAGTAGTA+TGG + chr8_1:83328531-83328550 None:intergenic 25.0%
! CAGCAATATATTAATTGTTC+AGG + chr8_1:83328572-83328591 None:intergenic 25.0%
! GCTCAATTTACAATAATGTT+TGG - chr8_1:83328781-83328800 Msa1220260:intron 25.0%
! ACTGAAAATTAATCCAACTA+AGG + chr8_1:83328842-83328861 None:intergenic 25.0%
! CAATTTATCCATAGCAAAAA+TGG + chr8_1:83329044-83329063 None:intergenic 25.0%
! AATTGAGTATAAAATAGCTC+TGG - chr8_1:83329059-83329078 Msa1220260:CDS 25.0%
! TGAGTTTGAAAAATGATTGA+AGG - chr8_1:83329129-83329148 Msa1220260:CDS 25.0%
! GAGTTTGAAAAATGATTGAA+GGG - chr8_1:83329130-83329149 Msa1220260:CDS 25.0%
! ACTAAAAAAGTAACGAAAGT+TGG + chr8_1:83329157-83329176 None:intergenic 25.0%
! TTCATTCCATTCTAATAATG+TGG + chr8_1:83329228-83329247 None:intergenic 25.0%
! AAGAAAAAAAATTAGGACGT+GGG - chr8_1:83329423-83329442 Msa1220260:CDS 25.0%
GGAAGATTAATTTAGGAAGA+AGG + chr8_1:83325080-83325099 None:intergenic 30.0%
ATGTTGTTAGAAACTGGAAA+CGG + chr8_1:83325299-83325318 None:intergenic 30.0%
TTTCTAACAACATTCACCAT+TGG - chr8_1:83325306-83325325 Msa1220260:CDS 30.0%
AGCTTTACAATTGTGTTTGT+TGG + chr8_1:83325371-83325390 None:intergenic 30.0%
!! TTCAATTTTTAGGGACTCAA+TGG - chr8_1:83325408-83325427 Msa1220260:CDS 30.0%
! TTAGTCTGAAATGCTTCAAA+GGG + chr8_1:83325591-83325610 None:intergenic 30.0%
! TTTAGTCTGAAATGCTTCAA+AGG + chr8_1:83325592-83325611 None:intergenic 30.0%
! TTGAAGCATTTCAGACTAAA+AGG - chr8_1:83325592-83325611 Msa1220260:intron 30.0%
TAAAAACATGAATGACCTCT+TGG + chr8_1:83325675-83325694 None:intergenic 30.0%
! TATATATATGTTTGTTGCCG+CGG - chr8_1:83325711-83325730 Msa1220260:intron 30.0%
!! GTTATTTTCCTAAGATATCC+AGG - chr8_1:83325865-83325884 Msa1220260:intron 30.0%
!! AAGCCAGTACCATATTTTAA+GGG + chr8_1:83326004-83326023 None:intergenic 30.0%
!! TGTTTTTGTAATAACAGGTG+TGG - chr8_1:83326046-83326065 Msa1220260:intron 30.0%
! GTTTTTGTAATAACAGGTGT+GGG - chr8_1:83326047-83326066 Msa1220260:intron 30.0%
!! TTAGCTGATTTTTATATGCC+TGG - chr8_1:83326226-83326245 Msa1220260:intron 30.0%
!! ATACTTTCTCAGTTGGTAAT+TGG - chr8_1:83326433-83326452 Msa1220260:CDS 30.0%
TTTGATGAGCATGTCATTAA+TGG - chr8_1:83326486-83326505 Msa1220260:CDS 30.0%
! ATGTTCATTTTCTCATTAGC+AGG + chr8_1:83326644-83326663 None:intergenic 30.0%
! ATCTGATCAAGTTCCTTTTT+AGG - chr8_1:83326666-83326685 Msa1220260:CDS 30.0%
CAACACAAATCTTTCTACTT+TGG + chr8_1:83326697-83326716 None:intergenic 30.0%
! ATATTCTTTTGTCTTGCCTA+AGG - chr8_1:83326839-83326858 Msa1220260:intron 30.0%
AGGGAGTGATAGAAATTAAT+AGG - chr8_1:83326922-83326941 Msa1220260:intron 30.0%
!! TTTTGGAAAGGAATTTAGAG+TGG + chr8_1:83327031-83327050 None:intergenic 30.0%
!!! TCAAAGTGAAGGTTTTTTAG+GGG + chr8_1:83327154-83327173 None:intergenic 30.0%
!!! GTTCAAAGTGAAGGTTTTTT+AGG + chr8_1:83327156-83327175 None:intergenic 30.0%
GTGTAATAGGAGAGATATAA+CGG + chr8_1:83327264-83327283 None:intergenic 30.0%
AAAGTGGAACAAAGTAGAAT+TGG + chr8_1:83327304-83327323 None:intergenic 30.0%
!! TTCTAGTTTGAGATCAAGAT+GGG + chr8_1:83327457-83327476 None:intergenic 30.0%
AAAGGTCTACTATTAGAGTT+GGG + chr8_1:83327721-83327740 None:intergenic 30.0%
GAATCTAATATAGAAGAACC+TGG - chr8_1:83327761-83327780 Msa1220260:intron 30.0%
! TTCTTTTAGTGAACTCATCA+AGG - chr8_1:83328094-83328113 Msa1220260:intron 30.0%
! TCTTTTAGTGAACTCATCAA+GGG - chr8_1:83328095-83328114 Msa1220260:intron 30.0%
TAACTTATGAAGGAATTACC+AGG + chr8_1:83328331-83328350 None:intergenic 30.0%
ATAGCTCAGATAACTTATGA+AGG + chr8_1:83328341-83328360 None:intergenic 30.0%
TTATAGTTAGGCATATCAGA+TGG - chr8_1:83328360-83328379 Msa1220260:intron 30.0%
TATAGTTAGGCATATCAGAT+GGG - chr8_1:83328361-83328380 Msa1220260:intron 30.0%
GTTAAATGAACGTGAATTGT+TGG - chr8_1:83328491-83328510 Msa1220260:intron 30.0%
CTTGAAGTTAAAATAACCTC+AGG - chr8_1:83328629-83328648 Msa1220260:intron 30.0%
TTAAAATAACCTCAGGTTAG+AGG - chr8_1:83328636-83328655 Msa1220260:intron 30.0%
ATTATGACCTATACTTGCAA+GGG - chr8_1:83328804-83328823 Msa1220260:intron 30.0%
AACATATATCAGGGATGAAA+AGG + chr8_1:83328912-83328931 None:intergenic 30.0%
TGCTTTCCACATTATTAGAA+TGG - chr8_1:83329219-83329238 Msa1220260:intron 30.0%
CATATAAGATTCACATACTC+CGG + chr8_1:83329338-83329357 None:intergenic 30.0%
GAAGAAAAAAAATTAGGACG+TGG - chr8_1:83329422-83329441 Msa1220260:CDS 30.0%
AGAAAAAAAATTAGGACGTG+GGG - chr8_1:83329424-83329443 Msa1220260:CDS 30.0%
TTCCATATCCTTCATCTTGA+AGG - chr8_1:83325096-83325115 Msa1220260:three_prime_UTR 35.0%
TCCATATCCTTCATCTTGAA+GGG - chr8_1:83325097-83325116 Msa1220260:three_prime_UTR 35.0%
TGGTGAATGTTGTTAGAAAC+TGG + chr8_1:83325305-83325324 None:intergenic 35.0%
CTTCAAAGGGGAATAGTAAT+TGG + chr8_1:83325578-83325597 None:intergenic 35.0%
! TAGTCTGAAATGCTTCAAAG+GGG + chr8_1:83325590-83325609 None:intergenic 35.0%
!! CCATATTTTAAGGGTCTGTT+TGG + chr8_1:83325995-83326014 None:intergenic 35.0%
CCAAACAGACCCTTAAAATA+TGG - chr8_1:83325992-83326011 Msa1220260:intron 35.0%
AGACCCTTAAAATATGGTAC+TGG - chr8_1:83325998-83326017 Msa1220260:intron 35.0%
! CAAGCCAGTACCATATTTTA+AGG + chr8_1:83326005-83326024 None:intergenic 35.0%
TGTATGCATTCCACTTAACA+TGG - chr8_1:83326127-83326146 Msa1220260:intron 35.0%
AAGAAAGACACCATGTTAAG+TGG + chr8_1:83326140-83326159 None:intergenic 35.0%
TCTGCATATGATAAATCACC+AGG + chr8_1:83326247-83326266 None:intergenic 35.0%
GATGTTGCTCTTTGATTACT+TGG - chr8_1:83326371-83326390 Msa1220260:intron 35.0%
!! GGTTTTTCAGCTGTTTTGTT+TGG - chr8_1:83326392-83326411 Msa1220260:intron 35.0%
TTGTAGCATACTTTCTCAGT+TGG - chr8_1:83326426-83326445 Msa1220260:CDS 35.0%
AGCATGTCATTAATGGAGAA+TGG - chr8_1:83326493-83326512 Msa1220260:CDS 35.0%
ATGTCATTAATGGAGAATGG+TGG - chr8_1:83326496-83326515 Msa1220260:CDS 35.0%
!! CGAGTTTTATGCGATTTACA+CGG + chr8_1:83326537-83326556 None:intergenic 35.0%
GTAAATCGCATAAAACTCGA+TGG - chr8_1:83326538-83326557 Msa1220260:intron 35.0%
ATTAGCAGGTCGTCAAATAT+CGG + chr8_1:83326630-83326649 None:intergenic 35.0%
TACTTTGGCATGACCTAAAA+AGG + chr8_1:83326682-83326701 None:intergenic 35.0%
AGAGAGTAATCGCATAATTG+AGG - chr8_1:83326807-83326826 Msa1220260:intron 35.0%
!! AAACAAATCTCTGAAGTACC+TGG + chr8_1:83327006-83327025 None:intergenic 35.0%
! AGGTACTTCAGAGATTTGTT+TGG - chr8_1:83327005-83327024 Msa1220260:intron 35.0%
!!! GGTTATCTTTGGTTTTGGAA+AGG + chr8_1:83327043-83327062 None:intergenic 35.0%
AGATTAGTGAGGGTTATCTT+TGG + chr8_1:83327054-83327073 None:intergenic 35.0%
GAAGAAAGGAAGATTAGTGA+GGG + chr8_1:83327064-83327083 None:intergenic 35.0%
AGAAGAAAGGAAGATTAGTG+AGG + chr8_1:83327065-83327084 None:intergenic 35.0%
!!! GTTTTTTAGGGGGTATTCAA+GGG + chr8_1:83327143-83327162 None:intergenic 35.0%
!!! CAAAGTGAAGGTTTTTTAGG+GGG + chr8_1:83327153-83327172 None:intergenic 35.0%
CTACAAACTGTTCAAAGTGA+AGG + chr8_1:83327165-83327184 None:intergenic 35.0%
! TGTTTCAAATAATGGAGCCT+GGG + chr8_1:83327205-83327224 None:intergenic 35.0%
AAAGTCTTCCATCAACATCA+TGG + chr8_1:83327234-83327253 None:intergenic 35.0%
AGTAGAATTGGAACTATCAC+AGG + chr8_1:83327292-83327311 None:intergenic 35.0%
CAAGGAAAACATGATCAAAG+TGG + chr8_1:83327320-83327339 None:intergenic 35.0%
! CACTTTGATCATGTTTTCCT+TGG - chr8_1:83327318-83327337 Msa1220260:intron 35.0%
! TCTAGTTTGAGATCAAGATG+GGG + chr8_1:83327456-83327475 None:intergenic 35.0%
!! GTTCTAGTTTGAGATCAAGA+TGG + chr8_1:83327458-83327477 None:intergenic 35.0%
CAATGCAAATCAGTATCTAG+AGG + chr8_1:83327635-83327654 None:intergenic 35.0%
CAAAGGTCTACTATTAGAGT+TGG + chr8_1:83327722-83327741 None:intergenic 35.0%
TCCTTGGTATTCATGAAATC+TGG - chr8_1:83327807-83327826 Msa1220260:intron 35.0%
ACCAGATTTCATGAATACCA+AGG + chr8_1:83327811-83327830 None:intergenic 35.0%
TTGTGCAAATCAGTCAAAGA+TGG + chr8_1:83327991-83328010 None:intergenic 35.0%
! CTTTTAGTGAACTCATCAAG+GGG - chr8_1:83328096-83328115 Msa1220260:intron 35.0%
GACATAAATATGACCTGCTT+GGG + chr8_1:83328228-83328247 None:intergenic 35.0%
CAAGCAGGTCATATTTATGT+CGG - chr8_1:83328227-83328246 Msa1220260:intron 35.0%
CTTGAGATTCTACTGATATC+TGG - chr8_1:83328305-83328324 Msa1220260:intron 35.0%
ATAGTTAGGCATATCAGATG+GGG - chr8_1:83328362-83328381 Msa1220260:intron 35.0%
ATCTTAATGTCATGGACAGA+TGG + chr8_1:83328414-83328433 None:intergenic 35.0%
GATTATGACCTATACTTGCA+AGG - chr8_1:83328803-83328822 Msa1220260:intron 35.0%
TTATGACCTATACTTGCAAG+GGG - chr8_1:83328805-83328824 Msa1220260:intron 35.0%
! ATTTTACCCCTTGCAAGTAT+AGG + chr8_1:83328814-83328833 None:intergenic 35.0%
GGTAAAATACATGCCTTAGT+TGG - chr8_1:83328826-83328845 Msa1220260:intron 35.0%
GTAAATTGCAACATTAGTCG+AGG + chr8_1:83328988-83329007 None:intergenic 35.0%
!! TTGCAACTCCATTTTTGCTA+TGG - chr8_1:83329033-83329052 Msa1220260:CDS 35.0%
! GAATCCTTTTGTTGATCATC+CGG - chr8_1:83329316-83329335 Msa1220260:intron 35.0%
CGGAGTATGTGAATCTTATA+TGG - chr8_1:83329336-83329355 Msa1220260:CDS 35.0%
GGAAGAAGGAGAAGAAGATT+CGG + chr8_1:83325066-83325085 None:intergenic 40.0%
CCATATCCTTCATCTTGAAG+GGG - chr8_1:83325098-83325117 Msa1220260:three_prime_UTR 40.0%
!! CATCATGCTTTAAGGTGTGT+TGG + chr8_1:83325126-83325145 None:intergenic 40.0%
GTGGTTGTCATCATGCTTTA+AGG + chr8_1:83325134-83325153 None:intergenic 40.0%
TACACGCAGTATCAACTTTC+CGG - chr8_1:83325234-83325253 Msa1220260:CDS 40.0%
TTGTTAGAAACTGGAAACGG+AGG + chr8_1:83325296-83325315 None:intergenic 40.0%
! AAAAAAAAGGCACGGACCAA+TGG + chr8_1:83325325-83325344 None:intergenic 40.0%
AGAAGGAGTTGGATATTCAG+AGG + chr8_1:83325533-83325552 None:intergenic 40.0%
CATGCATAAGTAGAAGGAGT+TGG + chr8_1:83325544-83325563 None:intergenic 40.0%
TCCTTCTACTTATGCATGTG+AGG - chr8_1:83325546-83325565 Msa1220260:intron 40.0%
TCCTCACATGCATAAGTAGA+AGG + chr8_1:83325550-83325569 None:intergenic 40.0%
TGAATGATGTGGAGCAATGA+CGG + chr8_1:83325644-83325663 None:intergenic 40.0%
TGGTAGGACAATGAATGATG+TGG + chr8_1:83325655-83325674 None:intergenic 40.0%
TCATTCATTGTCCTACCAAG+AGG - chr8_1:83325657-83325676 Msa1220260:intron 40.0%
AACATGAATGACCTCTTGGT+AGG + chr8_1:83325671-83325690 None:intergenic 40.0%
CATGACTTAAATCAAGACCG+CGG + chr8_1:83325731-83325750 None:intergenic 40.0%
CAAGTTCTCCTGGATATCTT+AGG + chr8_1:83325876-83325895 None:intergenic 40.0%
!! GTTGTTTTCACAAGTTCTCC+TGG + chr8_1:83325886-83325905 None:intergenic 40.0%
AACGTCTCTCAAACATTCCA+CGG - chr8_1:83325934-83325953 Msa1220260:CDS 40.0%
ATTTCTAACAAAAACGCCCG+TGG + chr8_1:83325954-83325973 None:intergenic 40.0%
TGATAGACCAGAAGCTTCAT+TGG - chr8_1:83326101-83326120 Msa1220260:intron 40.0%
GATAGACCAGAAGCTTCATT+GGG - chr8_1:83326102-83326121 Msa1220260:intron 40.0%
TACATTCCCAATGAAGCTTC+TGG + chr8_1:83326111-83326130 None:intergenic 40.0%
CACTGAGAGTTGTTCCAAAA+TGG - chr8_1:83326280-83326299 Msa1220260:intron 40.0%
GTTGTTCCAAAATGGCTATC+AGG - chr8_1:83326288-83326307 Msa1220260:intron 40.0%
! GGTTTTCCTGATAGCCATTT+TGG + chr8_1:83326297-83326316 None:intergenic 40.0%
GGATGGAATAGTAAGTCATC+TGG - chr8_1:83326321-83326340 Msa1220260:intron 40.0%
! GTTTTATGCGATTTACACGG+CGG + chr8_1:83326534-83326553 None:intergenic 40.0%
CATGACCAATTTGTGAAGGA+TGG + chr8_1:83326569-83326588 None:intergenic 40.0%
CATCCTTCACAAATTGGTCA+TGG - chr8_1:83326567-83326586 Msa1220260:intron 40.0%
! TTGCCTAAGGTCTCTTTTAG+CGG - chr8_1:83326852-83326871 Msa1220260:intron 40.0%
ATACCGCTAAAAGAGACCTT+AGG + chr8_1:83326858-83326877 None:intergenic 40.0%
TGAACATGTCTAGTACATCC+AGG - chr8_1:83326985-83327004 Msa1220260:intron 40.0%
!! GTGAGGGTTATCTTTGGTTT+TGG + chr8_1:83327048-83327067 None:intergenic 40.0%
!!! GGTTTTTTAGGGGGTATTCA+AGG + chr8_1:83327144-83327163 None:intergenic 40.0%
! GTTTCAAATAATGGAGCCTG+GGG + chr8_1:83327204-83327223 None:intergenic 40.0%
! GTGTTTCAAATAATGGAGCC+TGG + chr8_1:83327206-83327225 None:intergenic 40.0%
! GCTCCATTATTTGAAACACG+AGG - chr8_1:83327207-83327226 Msa1220260:intron 40.0%
GGTCCTCGTGTTTCAAATAA+TGG + chr8_1:83327213-83327232 None:intergenic 40.0%
ATCACAGGAGTCTGTGTAAT+AGG + chr8_1:83327277-83327296 None:intergenic 40.0%
AGATTTGGAAGGGACTGAAA+AGG + chr8_1:83327349-83327368 None:intergenic 40.0%
TTCTTCCACATGAGGAGATT+TGG + chr8_1:83327364-83327383 None:intergenic 40.0%
AACTCAAGTTCTTCCACATG+AGG + chr8_1:83327372-83327391 None:intergenic 40.0%
ATGTGGAAGAACTTGAGTTC+AGG - chr8_1:83327373-83327392 Msa1220260:intron 40.0%
TTAAACCCAACATCACCAAC+AGG + chr8_1:83327402-83327421 None:intergenic 40.0%
GAATATTGGGAAGGAAGAAC+GGG + chr8_1:83327428-83327447 None:intergenic 40.0%
GGAATATTGGGAAGGAAGAA+CGG + chr8_1:83327429-83327448 None:intergenic 40.0%
AGATGGGGACTTGGAATATT+GGG + chr8_1:83327441-83327460 None:intergenic 40.0%
AAGATGGGGACTTGGAATAT+TGG + chr8_1:83327442-83327461 None:intergenic 40.0%
CAACATTTGATGGAAGGGAA+GGG + chr8_1:83327677-83327696 None:intergenic 40.0%
CTTCCCTTCCATCAAATGTT+GGG - chr8_1:83327676-83327695 Msa1220260:intron 40.0%
TTCCCTTCCATCAAATGTTG+GGG - chr8_1:83327677-83327696 Msa1220260:intron 40.0%
AAATTGGCGACGGTTAACTT+TGG + chr8_1:83327862-83327881 None:intergenic 40.0%
ATCTTTGGCCTCGTTCTTAT+GGG - chr8_1:83327953-83327972 Msa1220260:intron 40.0%
TCAAGGGGAAACAAGTACTA+TGG - chr8_1:83328111-83328130 Msa1220260:intron 40.0%
CAAGGGGAAACAAGTACTAT+GGG - chr8_1:83328112-83328131 Msa1220260:intron 40.0%
AAGGGGAAACAAGTACTATG+GGG - chr8_1:83328113-83328132 Msa1220260:intron 40.0%
TACTATGGGGAATGCATAAC+TGG - chr8_1:83328126-83328145 Msa1220260:intron 40.0%
ATAAATATGACCTGCTTGGG+CGG + chr8_1:83328225-83328244 None:intergenic 40.0%
CGACATAAATATGACCTGCT+TGG + chr8_1:83328229-83328248 None:intergenic 40.0%
TAGTTAGGCATATCAGATGG+GGG - chr8_1:83328363-83328382 Msa1220260:intron 40.0%
ATGTACATGGCAGTCTGTTA+TGG - chr8_1:83328678-83328697 Msa1220260:intron 40.0%
TGTACATGGCAGTCTGTTAT+GGG - chr8_1:83328679-83328698 Msa1220260:intron 40.0%
! CAACATTTGGAGTGTCTGAA+AGG + chr8_1:83328737-83328756 None:intergenic 40.0%
CTTTCAGACACTCCAAATGT+TGG - chr8_1:83328735-83328754 Msa1220260:intron 40.0%
CAGTCTAACCTACCAACATT+TGG + chr8_1:83328750-83328769 None:intergenic 40.0%
TATTGCAGAAAACGGAGAGA+TGG - chr8_1:83329193-83329212 Msa1220260:CDS 40.0%
ATTGCAGAAAACGGAGAGAT+GGG - chr8_1:83329194-83329213 Msa1220260:CDS 40.0%
ATGAAGTAGATCCACCTTCA+AGG - chr8_1:83329243-83329262 Msa1220260:intron 40.0%
TGAAGTAGATCCACCTTCAA+GGG - chr8_1:83329244-83329263 Msa1220260:intron 40.0%
TACTCCGGATGATCAACAAA+AGG + chr8_1:83329323-83329342 None:intergenic 40.0%
CCCCTTCAAGATGAAGGATA+TGG + chr8_1:83325101-83325120 None:intergenic 45.0%
TGGCGGTTTGAAAAAACTGC+GGG + chr8_1:83325173-83325192 None:intergenic 45.0%
GTGGCGGTTTGAAAAAACTG+CGG + chr8_1:83325174-83325193 None:intergenic 45.0%
TTCAAACCGCCACTACTTGT+CGG - chr8_1:83325181-83325200 Msa1220260:CDS 45.0%
GAAACTGGAAACGGAGGATT+AGG + chr8_1:83325290-83325309 None:intergenic 45.0%
GGGACTCAATGGAACAAATG+TGG - chr8_1:83325419-83325438 Msa1220260:CDS 45.0%
ACGTCTCTCAAACATTCCAC+GGG - chr8_1:83325935-83325954 Msa1220260:CDS 45.0%
ATGGCTATCAGGAAAACCAG+AGG - chr8_1:83326299-83326318 Msa1220260:intron 45.0%
TGGCTATCAGGAAAACCAGA+GGG - chr8_1:83326300-83326319 Msa1220260:intron 45.0%
TATCAGGAAAACCAGAGGGA+TGG - chr8_1:83326304-83326323 Msa1220260:intron 45.0%
GACTTACTATTCCATCCCTC+TGG + chr8_1:83326318-83326337 None:intergenic 45.0%
AAGTCATCTGGTCAACTCAC+TGG - chr8_1:83326333-83326352 Msa1220260:intron 45.0%
!! CGATTTACACGGCGGATTTT+TGG + chr8_1:83326526-83326545 None:intergenic 45.0%
GACCAATTTGTGAAGGATGG+CGG + chr8_1:83326566-83326585 None:intergenic 45.0%
CCTTCACAAATTGGTCATGG+CGG - chr8_1:83326570-83326589 Msa1220260:intron 45.0%
ACACACACTTACACAGAGAG+AGG - chr8_1:83326902-83326921 Msa1220260:intron 45.0%
CACACACTTACACAGAGAGA+GGG - chr8_1:83326903-83326922 Msa1220260:intron 45.0%
CTTTGAACAGTTTGTAGCCG+TGG - chr8_1:83327168-83327187 Msa1220260:intron 45.0%
!!! CCTGGGGATTTTGTTTTCCA+CGG + chr8_1:83327188-83327207 None:intergenic 45.0%
GGACTGAAAAGGACTTTCCA+AGG + chr8_1:83327338-83327357 None:intergenic 45.0%
CCACATGAGGAGATTTGGAA+GGG + chr8_1:83327359-83327378 None:intergenic 45.0%
TCCACATGAGGAGATTTGGA+AGG + chr8_1:83327360-83327379 None:intergenic 45.0%
CTTGAGTTCAGGTATCCTGT+TGG - chr8_1:83327384-83327403 Msa1220260:intron 45.0%
!! AGGTATCCTGTTGGTGATGT+TGG - chr8_1:83327393-83327412 Msa1220260:intron 45.0%
!! GGTATCCTGTTGGTGATGTT+GGG - chr8_1:83327394-83327413 Msa1220260:intron 45.0%
TTGAGATCAAGATGGGGACT+TGG + chr8_1:83327450-83327469 None:intergenic 45.0%
TTTGACCACCTCCTTCTCAA+AGG - chr8_1:83327505-83327524 Msa1220260:intron 45.0%
ATAAAGGGAGCAACCAGACA+CGG + chr8_1:83327535-83327554 None:intergenic 45.0%
TGGTTGCTCCCTTTATACCA+AGG - chr8_1:83327539-83327558 Msa1220260:intron 45.0%
! AGTGGTGGCCTTGGTATAAA+GGG + chr8_1:83327550-83327569 None:intergenic 45.0%
AGAAGCTATCATGGCTGTGA+AGG + chr8_1:83327592-83327611 None:intergenic 45.0%
AGGGAAGGGAGAATTATTGG+TGG + chr8_1:83327663-83327682 None:intergenic 45.0%
GGAAGGGAAGGGAGAATTAT+TGG + chr8_1:83327666-83327685 None:intergenic 45.0%
CCAACATTTGATGGAAGGGA+AGG + chr8_1:83327678-83327697 None:intergenic 45.0%
CCTTCCCTTCCATCAAATGT+TGG - chr8_1:83327675-83327694 Msa1220260:intron 45.0%
GACCCCAACATTTGATGGAA+GGG + chr8_1:83327682-83327701 None:intergenic 45.0%
GAAACGACCCCAACATTTGA+TGG + chr8_1:83327687-83327706 None:intergenic 45.0%
TCAAATGTTGGGGTCGTTTC+AGG - chr8_1:83327687-83327706 Msa1220260:intron 45.0%
!! GCGACGGTTAACTTTGGTTT+TGG + chr8_1:83327856-83327875 None:intergenic 45.0%
GAGGAAAGGAAAATTGGCGA+CGG + chr8_1:83327872-83327891 None:intergenic 45.0%
!! ATCTTACAGGGGAGCATCTT+TGG - chr8_1:83327938-83327957 Msa1220260:intron 45.0%
CATCTTTGGCCTCGTTCTTA+TGG - chr8_1:83327952-83327971 Msa1220260:intron 45.0%
CCTTACCATTAACGTCAGCA+GGG + chr8_1:83328020-83328039 None:intergenic 45.0%
CCTGCTGACGTTAATGGTAA+GGG - chr8_1:83328018-83328037 Msa1220260:intron 45.0%
CTGCTGACGTTAATGGTAAG+GGG - chr8_1:83328019-83328038 Msa1220260:intron 45.0%
TGCTGACGTTAATGGTAAGG+GGG - chr8_1:83328020-83328039 Msa1220260:intron 45.0%
!! GTTGGCTGGTCTAAGACATT+TGG + chr8_1:83328157-83328176 None:intergenic 45.0%
AAAGCAGCTTCTTTGTTGGC+TGG + chr8_1:83328171-83328190 None:intergenic 45.0%
AGCCAACAAAGAAGCTGCTT+TGG - chr8_1:83328170-83328189 Msa1220260:intron 45.0%
GTCCAAAGCAGCTTCTTTGT+TGG + chr8_1:83328175-83328194 None:intergenic 45.0%
GATTCTACTGATATCTGGCC+TGG - chr8_1:83328310-83328329 Msa1220260:intron 45.0%
GCAATATCTCCTCTAACCTG+AGG + chr8_1:83328648-83328667 None:intergenic 45.0%
AGGTTAGAGGAGATATTGCG+AGG - chr8_1:83328649-83328668 Msa1220260:intron 45.0%
GGTTAGAGGAGATATTGCGA+GGG - chr8_1:83328650-83328669 Msa1220260:intron 45.0%
!! TGCGAGGGCATTAATGTACA+TGG - chr8_1:83328665-83328684 Msa1220260:intron 45.0%
TGTTATGGGTTTCCACAACC+AGG - chr8_1:83328693-83328712 Msa1220260:intron 45.0%
CAGACACTCCAAATGTTGGT+AGG - chr8_1:83328739-83328758 Msa1220260:intron 45.0%
AATTTCTCCTCCCTTGAAGG+TGG + chr8_1:83329257-83329276 None:intergenic 45.0%
CTCAATTTCTCCTCCCTTGA+AGG + chr8_1:83329260-83329279 None:intergenic 45.0%
! TTGGTGCCCCTTCAAGATGA+AGG + chr8_1:83325107-83325126 None:intergenic 50.0%
!! GGGGAGTATCAAGTGACTTG+TGG + chr8_1:83325153-83325172 None:intergenic 50.0%
GGCGGTTTGAAAAAACTGCG+GGG + chr8_1:83325172-83325191 None:intergenic 50.0%
TCAAACCGCCACTACTTGTC+GGG - chr8_1:83325182-83325201 Msa1220260:CDS 50.0%
GAACTGTTCCCGACAAGTAG+TGG + chr8_1:83325193-83325212 None:intergenic 50.0%
CTGGAAACGGAGGATTAGGA+CGG + chr8_1:83325286-83325305 None:intergenic 50.0%
GGCTTGCGTTTGCTTTGCTA+AGG - chr8_1:83326019-83326038 Msa1220260:intron 50.0%
ACAGGTGTGGGATGCTCTTA+AGG - chr8_1:83326059-83326078 Msa1220260:intron 50.0%
CACCGCCATCCTTCACAAAT+TGG - chr8_1:83326561-83326580 Msa1220260:intron 50.0%
CCGCCATGACCAATTTGTGA+AGG + chr8_1:83326573-83326592 None:intergenic 50.0%
ATATCGGCCATGGCAGATTG+TGG + chr8_1:83326614-83326633 None:intergenic 50.0%
AGGTCGTCAAATATCGGCCA+TGG + chr8_1:83326624-83326643 None:intergenic 50.0%
CCGTGGAAAACAAAATCCCC+AGG - chr8_1:83327185-83327204 Msa1220260:intron 50.0%
CACGAGGACCATGATGTTGA+TGG - chr8_1:83327223-83327242 Msa1220260:intron 50.0%
CCCTTCCAAATCTCCTCATG+TGG - chr8_1:83327356-83327375 Msa1220260:intron 50.0%
GGGGACTTGGAATATTGGGA+AGG + chr8_1:83327437-83327456 None:intergenic 50.0%
! CAGTGGTGGCCTTGGTATAA+AGG + chr8_1:83327551-83327570 None:intergenic 50.0%
TTATACCAAGGCCACCACTG+AGG - chr8_1:83327551-83327570 Msa1220260:intron 50.0%
!! TGGCTGTGAAGGCATTGCAA+GGG + chr8_1:83327581-83327600 None:intergenic 50.0%
!! ATGGCTGTGAAGGCATTGCA+AGG + chr8_1:83327582-83327601 None:intergenic 50.0%
CCATGATAGCTTCTCCTCCT+CGG - chr8_1:83327598-83327617 Msa1220260:intron 50.0%
CATGATAGCTTCTCCTCCTC+GGG - chr8_1:83327599-83327618 Msa1220260:intron 50.0%
CGACCCCAACATTTGATGGA+AGG + chr8_1:83327683-83327702 None:intergenic 50.0%
GTTGTCAGCCCATAAGAACG+AGG + chr8_1:83327964-83327983 None:intergenic 50.0%
ATTCGCCCTGCTGACGTTAA+TGG - chr8_1:83328012-83328031 Msa1220260:intron 50.0%
CCCTGCTGACGTTAATGGTA+AGG - chr8_1:83328017-83328036 Msa1220260:intron 50.0%
CCCTTACCATTAACGTCAGC+AGG + chr8_1:83328021-83328040 None:intergenic 50.0%
TGGACACTGAAGCAGACAAG+AGG - chr8_1:83328190-83328209 Msa1220260:intron 50.0%
ACACTGAAGCAGACAAGAGG+AGG - chr8_1:83328193-83328212 Msa1220260:intron 50.0%
TGAAGCAGACAAGAGGAGGT+GGG - chr8_1:83328197-83328216 Msa1220260:intron 50.0%
TAGGCATATCAGATGGGGGT+TGG - chr8_1:83328367-83328386 Msa1220260:intron 50.0%
TATGGGTTTCCACAACCAGG+AGG - chr8_1:83328696-83328715 Msa1220260:intron 50.0%
AGTAGATCCACCTTCAAGGG+AGG - chr8_1:83329247-83329266 Msa1220260:intron 50.0%
CTGTTCCCGACAAGTAGTGG+CGG + chr8_1:83325190-83325209 None:intergenic 55.0%
GCAGTATCAACTTTCCGGCG+CGG - chr8_1:83325239-83325258 Msa1220260:CDS 55.0%
GAGGATTAGGACGGCTTGCA+CGG + chr8_1:83325277-83325296 None:intergenic 55.0%
ACGTCCACCACAATCTGCCA+TGG - chr8_1:83326604-83326623 Msa1220260:intron 55.0%
! GTGCACCTTTGAGAAGGAGG+TGG + chr8_1:83327513-83327532 None:intergenic 55.0%
! ACGGTGCACCTTTGAGAAGG+AGG + chr8_1:83327516-83327535 None:intergenic 55.0%
! GACACGGTGCACCTTTGAGA+AGG + chr8_1:83327519-83327538 None:intergenic 55.0%
! TCTCAAAGGTGCACCGTGTC+TGG - chr8_1:83327519-83327538 Msa1220260:intron 55.0%
ATTGCAAGGGACTGCCTCAG+TGG + chr8_1:83327568-83327587 None:intergenic 55.0%
CCGAGGAGGAGAAGCTATCA+TGG + chr8_1:83327601-83327620 None:intergenic 55.0%
TCTCCTCCTCGGGTATTCTG+TGG - chr8_1:83327609-83327628 Msa1220260:intron 55.0%
TAGAGGCCACAGAATACCCG+AGG + chr8_1:83327618-83327637 None:intergenic 55.0%
CTGAAGCAGACAAGAGGAGG+TGG - chr8_1:83328196-83328215 Msa1220260:intron 55.0%
GTGTCTGAAAGGCGAAGACC+TGG + chr8_1:83328726-83328745 None:intergenic 55.0%
GTATCAACTTTCCGGCGCGG+CGG - chr8_1:83325242-83325261 Msa1220260:CDS 60.0%
TCGGCCATGGCAGATTGTGG+TGG + chr8_1:83326611-83326630 None:intergenic 60.0%
AGGCCACAGAATACCCGAGG+AGG + chr8_1:83327615-83327634 None:intergenic 60.0%
CCTGGACTTCCTCCTGGTTG+TGG + chr8_1:83328708-83328727 None:intergenic 60.0%
CCACAACCAGGAGGAAGTCC+AGG - chr8_1:83328705-83328724 Msa1220260:intron 60.0%
CGAAGACCTGGACTTCCTCC+TGG + chr8_1:83328714-83328733 None:intergenic 60.0%
GGATAATCCAACCGCCGCGC+CGG + chr8_1:83325256-83325275 None:intergenic 65.0%
GACTGCCTCAGTGGTGGCCT+TGG + chr8_1:83327559-83327578 None:intergenic 65.0%
GCAAGGGACTGCCTCAGTGG+TGG + chr8_1:83327565-83327584 None:intergenic 65.0%
CAACTTTCCGGCGCGGCGGT+TGG - chr8_1:83325246-83325265 Msa1220260:CDS 70.0%
! GAGGTGGGCACCGCCCAAGC+AGG - chr8_1:83328212-83328231 Msa1220260:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 83325050 83329594 83325050 ID=Msa1220260;Name=Msa1220260
chr8_1 mRNA 83325050 83329594 83325050 ID=Msa1220260-mRNA-1;Parent=Msa1220260;Name=Msa1220260-mRNA-1;_AED=0.17;_eAED=0.17;_QI=90|1|1|1|0.85|1|8|128|388
chr8_1 exon 83325050 83325443 83325050 ID=Msa1220260-mRNA-1:exon:29911;Parent=Msa1220260-mRNA-1
chr8_1 exon 83325888 83325993 83325888 ID=Msa1220260-mRNA-1:exon:29910;Parent=Msa1220260-mRNA-1
chr8_1 exon 83326411 83326541 83326411 ID=Msa1220260-mRNA-1:exon:29909;Parent=Msa1220260-mRNA-1
chr8_1 exon 83326611 83326697 83326611 ID=Msa1220260-mRNA-1:exon:29908;Parent=Msa1220260-mRNA-1
chr8_1 exon 83328314 83328378 83328314 ID=Msa1220260-mRNA-1:exon:29907;Parent=Msa1220260-mRNA-1
chr8_1 exon 83328517 83328581 83328517 ID=Msa1220260-mRNA-1:exon:29906;Parent=Msa1220260-mRNA-1
chr8_1 exon 83328966 83329224 83328966 ID=Msa1220260-mRNA-1:exon:29905;Parent=Msa1220260-mRNA-1
chr8_1 exon 83329317 83329594 83329317 ID=Msa1220260-mRNA-1:exon:29904;Parent=Msa1220260-mRNA-1
chr8_1 five_prime_UTR 83329505 83329594 83329505 ID=Msa1220260-mRNA-1:five_prime_utr;Parent=Msa1220260-mRNA-1
chr8_1 CDS 83329317 83329504 83329317 ID=Msa1220260-mRNA-1:cds;Parent=Msa1220260-mRNA-1
chr8_1 CDS 83328966 83329224 83328966 ID=Msa1220260-mRNA-1:cds;Parent=Msa1220260-mRNA-1
chr8_1 CDS 83328517 83328581 83328517 ID=Msa1220260-mRNA-1:cds;Parent=Msa1220260-mRNA-1
chr8_1 CDS 83328314 83328378 83328314 ID=Msa1220260-mRNA-1:cds;Parent=Msa1220260-mRNA-1
chr8_1 CDS 83326611 83326697 83326611 ID=Msa1220260-mRNA-1:cds;Parent=Msa1220260-mRNA-1
chr8_1 CDS 83326411 83326541 83326411 ID=Msa1220260-mRNA-1:cds;Parent=Msa1220260-mRNA-1
chr8_1 CDS 83325888 83325993 83325888 ID=Msa1220260-mRNA-1:cds;Parent=Msa1220260-mRNA-1
chr8_1 CDS 83325178 83325443 83325178 ID=Msa1220260-mRNA-1:cds;Parent=Msa1220260-mRNA-1
chr8_1 three_prime_UTR 83325050 83325177 83325050 ID=Msa1220260-mRNA-1:three_prime_utr;Parent=Msa1220260-mRNA-1
Gene Sequence

>Msa1220260

ATGATGACAACCACAAGTCACTTGATACTCCCCGCAGTTTTTTCAAACCGCCACTACTTGTCGGGAACAGTTCAACTTCACAATCAAAATCTCATACACGCAGTATCAACTTTCCGGCGCGGCGGTTGGATTATCCGTGCAAGCCGTCCTAATCCTCCGTTTCCAGTTTCTAACAACATTCACCATTGGGACTCAATGGAACAAATGTGGCTAACTTGTTTTCATTTCTCATGGAAATGCTTGTTTTCTAGACTTGTTTCTTTTTACTTGTTATTATCTCTTAATCTTGTTGCTGTTGCCTCTGAATATCCAACTCCTTCTACTTATGCATGTGAGGATGTTGCCAATTACTATTCCCCTTTGAAGCATTTCAGACTAAAAGGTGAAAAACTCAAGAGAAAATTGAATTCCGTCATTGCTCCACATCATTCATTGTCCTACCAAGAGGTGTGGGATGCTCTTAAGGTTCTTGATGCTGCTGATATTGATAGACCAGAAGCTTCATTGGGAATAGTCGAAATATACTCACTGAGAGTTGTTCCAAAATGGCTATCAGGAAAACCAGAGGGATGGAATAGGGAGCATCTTTGGCCTCGTTCTTATGGGCTGACAACTGTTCCATCTTTGACTGATTTGCACAACATTCGCCCTGCTGACGTTAATGTGAACTCATCAAGGGGAAACAAGTACTATGGGGAATGCATAACTGGCTCGACCAAATGTCTTAGACCAGCCAACAAAGAAGCTGCTTTGGACACTGAAGCAGACAAGAGGAGGTGGGCACCGCCCAAGCAGGTTAGAGGAGATATTGCGAGGGCATTAATGTACATGGCAGTCTGTTATGGGTTTCCACAACCAGGAGGAAGTCCAGGTCTTCGCCTTTCAGACACTCCAAATGTTGAAAACGGAGAGATGGGACTGCTTTCCACATTATTAGAATGGAATGAAGTAGATCCACCTTCAAGGGAGGAGAAATTGAGAAACGAGAGAATATGTAAATTTTATCAGCATAATCGGAATCCTTTTGTTGATCATCCGGAGTATGTGAATCTTATATGGAAGCGACTTGTTTCAATGCGTGCTCATAATAATAACGATGATGATAAGAATGTCTCCAACGAAGAAGAAAAAAAATTAGGACGTGGGGCTCAATTGCTTCACTTATGA

Protein sequence

>Msa1220260

MMTTTSHLILPAVFSNRHYLSGTVQLHNQNLIHAVSTFRRGGWIIRASRPNPPFPVSNNIHHWDSMEQMWLTCFHFSWKCLFSRLVSFYLLLSLNLVAVASEYPTPSTYACEDVANYYSPLKHFRLKGEKLKRKLNSVIAPHHSLSYQEVWDALKVLDAADIDRPEASLGIVEIYSLRVVPKWLSGKPEGWNREHLWPRSYGLTTVPSLTDLHNIRPADVNVNSSRGNKYYGECITGSTKCLRPANKEAALDTEADKRRWAPPKQVRGDIARALMYMAVCYGFPQPGGSPGLRLSDTPNVENGEMGLLSTLLEWNEVDPPSREEKLRNERICKFYQHNRNPFVDHPEYVNLIWKRLVSMRAHNNNDDDKNVSNEEEKKLGRGAQLLHL*