AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0379390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0379390 MtrunA17_Chr3g0132451 87.458 295 29 5 1 292 1 290 3.84e-179 495
Msa0379390 MtrunA17_Chr5g0411091 34.225 187 117 2 93 277 98 280 3.49e-26 105
Msa0379390 MtrunA17_Chr4g0058151 32.948 173 104 6 92 258 123 289 3.74e-25 102
Msa0379390 MtrunA17_Chr3g0116631 34.286 175 104 6 92 259 110 280 5.91e-25 101
Msa0379390 MtrunA17_Chr1g0168601 36.943 157 86 7 113 263 84 233 4.93e-21 89.4
Msa0379390 MtrunA17_Chr7g0267571 28.704 216 132 7 56 258 79 285 9.03e-21 90.5
Msa0379390 MtrunA17_Chr1g0177101 30.270 185 113 6 83 258 103 280 4.77e-20 88.2
Msa0379390 MtrunA17_Chr3g0087481 29.832 238 137 10 38 258 8 232 1.77e-17 79.7
Msa0379390 MtrunA17_Chr1g0181111 27.490 251 146 8 34 261 35 272 2.47e-16 77.4
Msa0379390 MtrunA17_Chr1g0179701 28.161 174 117 5 91 258 241 412 7.19e-15 74.7
Msa0379390 MtrunA17_Chr1g0179701 27.011 174 123 3 93 266 152 321 1.83e-12 67.4
Msa0379390 MtrunA17_Chr7g0259641 28.108 185 122 5 93 269 587 768 1.44e-14 73.9
Msa0379390 MtrunA17_Chr7g0265341 26.230 183 123 5 91 263 249 429 3.96e-14 72.4
Msa0379390 MtrunA17_Chr1g0201151 28.804 184 118 5 91 263 209 390 4.29e-13 69.3
Msa0379390 MtrunA17_Chr5g0447761 26.380 163 108 5 90 243 5 164 2.20e-12 67.0
Msa0379390 MtrunA17_Chr4g0068631 29.012 162 103 7 91 248 88 241 1.00e-11 65.5
Msa0379390 MtrunA17_Chr6g0465751 27.174 184 121 5 91 263 200 381 1.71e-11 64.7
Msa0379390 MtrunA17_Chr0c09g0493511 29.189 185 116 7 91 263 118 299 2.72e-11 63.9
Msa0379390 MtrunA17_Chr2g0290191 25.153 163 108 5 92 243 5 164 2.74e-11 63.9
Msa0379390 MtrunA17_Chr6g0465691 27.717 184 120 5 91 263 118 299 2.99e-11 63.5
Msa0379390 MtrunA17_Chr6g0466501 27.717 184 120 5 91 263 200 381 3.03e-11 63.9
Msa0379390 MtrunA17_Chr1g0153181 27.869 183 111 4 96 263 216 392 3.14e-11 63.9
Msa0379390 MtrunA17_Chr6g0481071 36.585 82 51 1 91 171 95 176 6.11e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0379390 AT4G09040.1 61.957 184 68 2 86 267 89 272 9.43e-78 239
Msa0379390 AT4G09040.2 62.088 182 67 2 88 267 31 212 2.03e-77 236
Msa0379390 AT2G35410.1 33.054 239 144 3 34 256 28 266 4.99e-37 134
Msa0379390 AT1G60000.1 30.242 248 142 9 35 264 24 258 5.70e-23 95.5
Msa0379390 AT4G24770.1 32.759 174 105 6 91 258 150 317 7.77e-23 96.7
Msa0379390 AT4G24770.2 32.759 174 105 6 91 258 150 317 7.77e-23 96.7
Msa0379390 AT3G52380.1 31.282 195 114 7 75 258 107 292 1.83e-22 95.5
Msa0379390 AT5G50250.1 32.370 173 105 6 92 258 114 280 2.27e-22 94.7
Msa0379390 AT2G37220.1 30.964 197 110 6 86 259 85 278 2.57e-18 83.6
Msa0379390 AT3G16380.1 30.055 183 117 4 90 263 201 381 3.69e-15 75.9
Msa0379390 AT4G34110.1 29.508 183 117 4 91 263 215 395 7.40e-15 75.1
Msa0379390 AT2G36660.1 27.322 183 121 5 91 263 201 381 1.66e-14 73.9
Msa0379390 AT2G36660.1 26.901 171 119 4 93 263 114 278 1.52e-11 65.1
Msa0379390 AT3G52150.2 27.155 232 156 7 37 258 22 250 5.33e-13 67.8
Msa0379390 AT3G52150.1 27.155 232 156 7 37 258 22 250 5.33e-13 67.8
Msa0379390 AT1G01080.1 26.108 203 129 5 71 258 88 284 3.14e-12 66.2
Msa0379390 AT1G71770.1 28.108 185 121 4 89 263 237 419 4.49e-12 66.6
Msa0379390 AT1G71770.2 28.108 185 121 4 89 263 237 419 4.49e-12 66.6
Msa0379390 AT2G23350.1 27.041 196 123 4 82 263 216 405 8.35e-12 65.9
Msa0379390 AT1G22760.1 28.866 194 122 7 82 263 220 409 1.64e-11 65.1
Msa0379390 AT5G41690.1 30.601 183 96 6 93 250 70 246 5.69e-11 63.2
Msa0379390 AT5G41690.3 30.601 183 96 6 93 250 70 246 5.69e-11 63.2
Msa0379390 AT5G41690.2 30.601 183 96 6 93 250 70 246 5.69e-11 63.2
Msa0379390 AT1G01080.3 25.907 193 122 5 71 248 88 274 6.46e-11 62.4

Find 91 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCTTTATCTGTACTATA+TGG 0.167846 3_1:+80511868 Msa0379390:three_prime_UTR
ACAAACAAGTTATATGTTAT+TGG 0.178438 3_1:-80511041 None:intergenic
GATATGTTTATTGCTTTCTT+AGG 0.229758 3_1:-80511775 None:intergenic
GTTGTTTGGTTGTAATAATA+AGG 0.261403 3_1:-80509842 None:intergenic
GGGTTTAGCGTTTGTGGAAA+TGG 0.293091 3_1:+80510186 Msa0379390:CDS
CAAATATGCTAAGCCTAAAA+AGG 0.298308 3_1:+80510989 Msa0379390:CDS
TTTGTTCCTCGGTGGTTACT+TGG 0.304393 3_1:-80509911 None:intergenic
CTTCTTTATCTGTACTATAT+GGG 0.324672 3_1:+80511869 Msa0379390:three_prime_UTR
ATGGATAAACGAAGAGAATA+AGG 0.330328 3_1:-80509798 None:intergenic
TGTATAATAAGAACAGAAAC+AGG 0.337196 3_1:+80510164 Msa0379390:CDS
AGTTTCAGAGCATCTCAGTT+TGG 0.363763 3_1:-80509657 None:intergenic
AGAGCTGCAGAAGCTTCTTC+AGG 0.366986 3_1:-80510214 None:intergenic
GTTTCAGAGCATCTCAGTTT+GGG 0.376742 3_1:-80509656 None:intergenic
CTTCTCAATTGCTATGCTAT+GGG 0.384509 3_1:-80509622 None:intergenic
AGCTTCTTTCTTAGACTTGA+AGG 0.386679 3_1:-80511195 None:intergenic
CCTAGACGGCCATCTGGTTA+TGG 0.388895 3_1:+80511164 Msa0379390:CDS
TAGTAAGCGGTTTGTTCAAC+TGG 0.391185 3_1:+80511435 Msa0379390:CDS
TGGTTGTAATAATAAGGGTT+GGG 0.392079 3_1:-80509836 None:intergenic
CAAACATTTCTTATGAAGTA+AGG 0.396454 3_1:+80511066 Msa0379390:CDS
TTAAGAATAGGAGAAATCTT+AGG 0.397687 3_1:+80511895 Msa0379390:three_prime_UTR
ACCTGGTAGTAGAGAACTCT+TGG 0.407789 3_1:-80509935 None:intergenic
TCTTCTCAATTGCTATGCTA+TGG 0.409991 3_1:-80509623 None:intergenic
AAACAGGGGTTTAGCGTTTG+TGG 0.413290 3_1:+80510180 Msa0379390:CDS
TTCTTTATCTGTACTATATG+GGG 0.415298 3_1:+80511870 Msa0379390:three_prime_UTR
GGTTTAGCGTTTGTGGAAAT+GGG 0.418798 3_1:+80510187 Msa0379390:CDS
AGTTGAACAAACCGCTTACT+AGG 0.422121 3_1:-80511433 None:intergenic
GAACTCTTGGGTTTGTTCCT+CGG 0.423671 3_1:-80509922 None:intergenic
GTTAATGAATTAATTTCAAA+TGG 0.424870 3_1:+80511735 Msa0379390:three_prime_UTR
CCATAACCAGATGGCCGTCT+AGG 0.428089 3_1:-80511164 None:intergenic
GAAGCTCTTGCCGAGTTTGA+AGG 0.428323 3_1:+80511221 Msa0379390:CDS
AGAATAAGAAGAGTGTTGTT+TGG 0.434227 3_1:-80509856 None:intergenic
TTACTAGGTGCCACCCTTAG+TGG 0.434877 3_1:-80511418 None:intergenic
TAAAGAAGAAATTATCAGAT+AGG 0.436196 3_1:-80511854 None:intergenic
GGGATGAAACCAAATGGATA+AGG 0.438798 3_1:-80509601 None:intergenic
ATTGGCTTCCGTTCCACTGA+TGG 0.442268 3_1:-80511023 None:intergenic
GGATGAAACCAAATGGATAA+GGG 0.442790 3_1:-80509600 None:intergenic
CTGAGATGCTCTGAAACTAA+TGG 0.445996 3_1:+80509662 Msa0379390:exon
GGTGGTTACTTGGGTTTGTT+CGG 0.446564 3_1:-80509901 None:intergenic
ACGAAGAGAATAAGGATTGA+GGG 0.446924 3_1:-80509790 None:intergenic
TTGTTTGGTTGTAATAATAA+GGG 0.474287 3_1:-80509841 None:intergenic
TTGGTTGTAATAATAAGGGT+TGG 0.481202 3_1:-80509837 None:intergenic
GGTTGTAATAATAAGGGTTG+GGG 0.489765 3_1:-80509835 None:intergenic
TTAATTTCAAATGGTTAGCA+AGG 0.497175 3_1:+80511744 Msa0379390:three_prime_UTR
AACGAAGAGAATAAGGATTG+AGG 0.498160 3_1:-80509791 None:intergenic
GAGAACCCTAGACGGCCATC+TGG 0.499676 3_1:+80511158 Msa0379390:CDS
CAACTGGCGGAGGAGAGTGC+AGG 0.500053 3_1:+80511451 Msa0379390:CDS
TGGAAAAGTCCTTGATGTTG+AGG 0.503374 3_1:+80510022 Msa0379390:CDS
CTTGTCAAAGTCGAAAGAGT+TGG 0.505319 3_1:-80509754 None:intergenic
TTGTTCCTCGGTGGTTACTT+GGG 0.517713 3_1:-80509910 None:intergenic
CATAACCAGATGGCCGTCTA+GGG 0.521702 3_1:-80511163 None:intergenic
AAGAGTTGGTTATTATTACA+TGG 0.525296 3_1:-80509740 None:intergenic
GCTATGGGGATGAAACCAAA+TGG 0.525399 3_1:-80509607 None:intergenic
TTTGTGGAAGATAATTGAGT+TGG 0.527851 3_1:-80509714 None:intergenic
TTGGGTTTGTTCGGAAGTAG+AGG 0.540338 3_1:-80509892 None:intergenic
TCTTTATCTGTACTATATGG+GGG 0.540822 3_1:+80511871 Msa0379390:three_prime_UTR
TTTGTTTCTTTGTGAACTTG+AGG 0.542341 3_1:+80511642 Msa0379390:three_prime_UTR
CGGGCTTACATACATACGAT+TGG 0.544479 3_1:-80510246 None:intergenic
GGTTACCTTTCCTTCAAACT+CGG 0.547922 3_1:-80511231 None:intergenic
TACAACACAAACAATATACA+TGG 0.550382 3_1:-80511925 None:intergenic
CCCAAGAGTTCTCTACTACC+AGG 0.552704 3_1:+80509934 Msa0379390:CDS
TCTTGCCGAGTTTGAAGGAA+AGG 0.556428 3_1:+80511226 Msa0379390:CDS
TGGTAAAGTTGTTTCTGCAG+AGG 0.561558 3_1:+80511124 Msa0379390:CDS
AAACATATCAATATTAGTGA+TGG 0.566258 3_1:+80511789 Msa0379390:three_prime_UTR
TGGGGTATGAGTATGAGTAA+TGG 0.566390 3_1:-80509817 None:intergenic
GCGGTTTGTTCAACTGGCGG+AGG 0.574915 3_1:+80511441 Msa0379390:CDS
GGAGAAAATACGGCCATCAG+TGG 0.578295 3_1:+80511010 Msa0379390:CDS
CTCTTGGGTTTGTTCCTCGG+TGG 0.580053 3_1:-80509919 None:intergenic
TTCTCAATTGCTATGCTATG+GGG 0.584651 3_1:-80509621 None:intergenic
CCTGGTAGTAGAGAACTCTT+GGG 0.586095 3_1:-80509934 None:intergenic
AGTAAGGTCTAAAGACCTCA+AGG 0.590952 3_1:+80511082 Msa0379390:CDS
TATGGGAAGGCCACTAAGGG+TGG 0.592174 3_1:+80511408 Msa0379390:CDS
AACATTCTGAGCAAGTAACC+TGG 0.593923 3_1:-80509952 None:intergenic
CATATTTGATATTTATTACG+CGG 0.594638 3_1:-80510974 None:intergenic
AACTGGCGGAGGAGAGTGCA+GGG 0.612225 3_1:+80511452 Msa0379390:CDS
TACTTGCTCAGAATGTTCCA+TGG 0.612581 3_1:+80509958 Msa0379390:CDS
CAAAGAACGAATATCTTCAG+TGG 0.626913 3_1:-80509988 None:intergenic
TAAGCGGTTTGTTCAACTGG+CGG 0.631391 3_1:+80511438 Msa0379390:CDS
GAAACCAAATGGATAAGGGG+TGG 0.639598 3_1:-80509596 None:intergenic
AAATACGGCCATCAGTGGAA+CGG 0.640291 3_1:+80511015 Msa0379390:CDS
TTCTGAGTTGAGCGTCAATG+AGG 0.642846 3_1:+80511489 Msa0379390:CDS
TCTTCAGTGGTACTTGACCA+TGG 0.649901 3_1:-80509975 None:intergenic
GACACAAATCCATAACCAGA+TGG 0.653420 3_1:-80511173 None:intergenic
TCTTTCATGAGAACCCTAGA+CGG 0.656239 3_1:+80511150 Msa0379390:CDS
TATAATAAGAACAGAAACAG+GGG 0.661478 3_1:+80510166 Msa0379390:CDS
GATGAAACCAAATGGATAAG+GGG 0.663873 3_1:-80509599 None:intergenic
GTATAATAAGAACAGAAACA+GGG 0.680373 3_1:+80510165 Msa0379390:CDS
TAAGGGTGGCACCTAGTAAG+CGG 0.686102 3_1:+80511422 Msa0379390:CDS
GAAGATAATTGAGTTGGACA+TGG 0.691814 3_1:-80509708 None:intergenic
ATAAAATTGATATTCAAACA+CGG 0.727358 3_1:+80509563 None:intergenic
GTTGAAAAGATTATTCTACG+TGG 0.746485 3_1:-80511964 None:intergenic
ACAAACCCAAGTAACCACCG+AGG 0.809424 3_1:+80509905 Msa0379390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTGTTTGTTTTTGTTT+TGG + chr3_1:80510119-80510138 Msa0379390:intron 15.0%
!! GTTAGAAAATAGTTATTATT+AGG + chr3_1:80510632-80510651 Msa0379390:intron 15.0%
!! AATAAAAATCTTTGCATTAT+TGG - chr3_1:80511594-80511613 None:intergenic 15.0%
!!! AATAATGCAAAGATTTTTAT+TGG + chr3_1:80511593-80511612 Msa0379390:intron 15.0%
!!! TTTAAATAATGTGTTTTTAC+AGG + chr3_1:80511616-80511635 Msa0379390:intron 15.0%
!! GTTAATGAATTAATTTCAAA+TGG + chr3_1:80511735-80511754 Msa0379390:three_prime_UTR 15.0%
!!! TCTTTTCAACTAAATTTAAA+TGG + chr3_1:80511977-80511996 Msa0379390:three_prime_UTR 15.0%
!!! TTTTTTGTTTGTTTTTGTTT+TGG + chr3_1:80510119-80510138 Msa0379390:intron 15.0%
!! GTTAGAAAATAGTTATTATT+AGG + chr3_1:80510632-80510651 Msa0379390:intron 15.0%
!! AATAAAAATCTTTGCATTAT+TGG - chr3_1:80511594-80511613 None:intergenic 15.0%
!!! AATAATGCAAAGATTTTTAT+TGG + chr3_1:80511593-80511612 Msa0379390:intron 15.0%
!!! TTTAAATAATGTGTTTTTAC+AGG + chr3_1:80511616-80511635 Msa0379390:intron 15.0%
!! GTTAATGAATTAATTTCAAA+TGG + chr3_1:80511735-80511754 Msa0379390:three_prime_UTR 15.0%
!!! TCTTTTCAACTAAATTTAAA+TGG + chr3_1:80511977-80511996 Msa0379390:three_prime_UTR 15.0%
!! TTGTTTGGTTGTAATAATAA+GGG - chr3_1:80509844-80509863 None:intergenic 20.0%
!! TATTATGTTCAATTCATTTC+AGG + chr3_1:80510067-80510086 Msa0379390:intron 20.0%
!! AGTTATTATTAGGTGAAAAT+TGG + chr3_1:80510642-80510661 Msa0379390:intron 20.0%
!! AGATAATTATCTTAGTTACT+TGG - chr3_1:80510721-80510740 None:intergenic 20.0%
!! CATATTTGATATTTATTACG+CGG - chr3_1:80510977-80510996 None:intergenic 20.0%
!! ACAAACAAGTTATATGTTAT+TGG - chr3_1:80511044-80511063 None:intergenic 20.0%
!! CCAAATTCAAATTAACAAAT+TGG - chr3_1:80511271-80511290 None:intergenic 20.0%
!!! CCAATTTGTTAATTTGAATT+TGG + chr3_1:80511268-80511287 Msa0379390:intron 20.0%
!! ATTATTTAGTATTGTGACAT+TGG + chr3_1:80511360-80511379 Msa0379390:intron 20.0%
!!! ATATTTCTGCAGAATTTTAT+GGG + chr3_1:80511391-80511410 Msa0379390:intron 20.0%
!!! ATAAAATCAATCAGTTTTGT+CGG - chr3_1:80511521-80511540 None:intergenic 20.0%
!! AAACATATCAATATTAGTGA+TGG + chr3_1:80511789-80511808 Msa0379390:three_prime_UTR 20.0%
!! TAAAGAAGAAATTATCAGAT+AGG - chr3_1:80511857-80511876 None:intergenic 20.0%
!! TTGTTTGGTTGTAATAATAA+GGG - chr3_1:80509844-80509863 None:intergenic 20.0%
!! TATTATGTTCAATTCATTTC+AGG + chr3_1:80510067-80510086 Msa0379390:intron 20.0%
!! AGTTATTATTAGGTGAAAAT+TGG + chr3_1:80510642-80510661 Msa0379390:intron 20.0%
!! AGATAATTATCTTAGTTACT+TGG - chr3_1:80510721-80510740 None:intergenic 20.0%
!! CATATTTGATATTTATTACG+CGG - chr3_1:80510977-80510996 None:intergenic 20.0%
!! ACAAACAAGTTATATGTTAT+TGG - chr3_1:80511044-80511063 None:intergenic 20.0%
!! CCAAATTCAAATTAACAAAT+TGG - chr3_1:80511271-80511290 None:intergenic 20.0%
!!! CCAATTTGTTAATTTGAATT+TGG + chr3_1:80511268-80511287 Msa0379390:intron 20.0%
!! ATTATTTAGTATTGTGACAT+TGG + chr3_1:80511360-80511379 Msa0379390:intron 20.0%
!!! ATATTTCTGCAGAATTTTAT+GGG + chr3_1:80511391-80511410 Msa0379390:intron 20.0%
!!! ATAAAATCAATCAGTTTTGT+CGG - chr3_1:80511521-80511540 None:intergenic 20.0%
!! AAACATATCAATATTAGTGA+TGG + chr3_1:80511789-80511808 Msa0379390:three_prime_UTR 20.0%
!! TAAAGAAGAAATTATCAGAT+AGG - chr3_1:80511857-80511876 None:intergenic 20.0%
!! TATTATTACATGGTGTTTTG+TGG - chr3_1:80509733-80509752 None:intergenic 25.0%
!! AAGAGTTGGTTATTATTACA+TGG - chr3_1:80509743-80509762 None:intergenic 25.0%
! GTTGTTTGGTTGTAATAATA+AGG - chr3_1:80509845-80509864 None:intergenic 25.0%
!! CGTTCTTTGTTTGAAAAATA+TGG + chr3_1:80510002-80510021 Msa0379390:CDS 25.0%
! TGTATAATAAGAACAGAAAC+AGG + chr3_1:80510164-80510183 Msa0379390:CDS 25.0%
! GTATAATAAGAACAGAAACA+GGG + chr3_1:80510165-80510184 Msa0379390:CDS 25.0%
! TATAATAAGAACAGAAACAG+GGG + chr3_1:80510166-80510185 Msa0379390:CDS 25.0%
! AAGAGGGTGAAATTTAATAT+CGG - chr3_1:80510269-80510288 None:intergenic 25.0%
!! AACGTGTGAATTTTATAGAT+AGG + chr3_1:80510315-80510334 Msa0379390:intron 25.0%
!! ACGTGTGAATTTTATAGATA+GGG + chr3_1:80510316-80510335 Msa0379390:intron 25.0%
!! GTAATTTTCTATGTCAAACT+CGG + chr3_1:80510565-80510584 Msa0379390:intron 25.0%
!! GATTTGATAGAATTGGTTTA+AGG + chr3_1:80510607-80510626 Msa0379390:intron 25.0%
! GAATATGATACAATTAGAGT+AGG + chr3_1:80510680-80510699 Msa0379390:intron 25.0%
!!! GATTTGTTAGAAATGGTTTA+CGG - chr3_1:80510754-80510773 None:intergenic 25.0%
! TGTTAGATATAGTTACTAGT+TGG - chr3_1:80510778-80510797 None:intergenic 25.0%
! CAGATAAACACATCAAATTA+AGG - chr3_1:80510920-80510939 None:intergenic 25.0%
! CAAACATTTCTTATGAAGTA+AGG + chr3_1:80511066-80511085 Msa0379390:CDS 25.0%
!!! AAATTTTAACCGCAATTTCT+TGG + chr3_1:80511321-80511340 Msa0379390:intron 25.0%
!!! GATATTTCTGCAGAATTTTA+TGG + chr3_1:80511390-80511409 Msa0379390:intron 25.0%
! TTAATTTCAAATGGTTAGCA+AGG + chr3_1:80511744-80511763 Msa0379390:three_prime_UTR 25.0%
! GATATGTTTATTGCTTTCTT+AGG - chr3_1:80511778-80511797 None:intergenic 25.0%
! TCTTCTTTATCTGTACTATA+TGG + chr3_1:80511868-80511887 Msa0379390:three_prime_UTR 25.0%
! CTTCTTTATCTGTACTATAT+GGG + chr3_1:80511869-80511888 Msa0379390:three_prime_UTR 25.0%
! TTCTTTATCTGTACTATATG+GGG + chr3_1:80511870-80511889 Msa0379390:three_prime_UTR 25.0%
! TTAAGAATAGGAGAAATCTT+AGG + chr3_1:80511895-80511914 Msa0379390:three_prime_UTR 25.0%
! TACAACACAAACAATATACA+TGG - chr3_1:80511928-80511947 None:intergenic 25.0%
!! TATTATTACATGGTGTTTTG+TGG - chr3_1:80509733-80509752 None:intergenic 25.0%
!! AAGAGTTGGTTATTATTACA+TGG - chr3_1:80509743-80509762 None:intergenic 25.0%
! GTTGTTTGGTTGTAATAATA+AGG - chr3_1:80509845-80509864 None:intergenic 25.0%
!! CGTTCTTTGTTTGAAAAATA+TGG + chr3_1:80510002-80510021 Msa0379390:CDS 25.0%
! TGTATAATAAGAACAGAAAC+AGG + chr3_1:80510164-80510183 Msa0379390:CDS 25.0%
! GTATAATAAGAACAGAAACA+GGG + chr3_1:80510165-80510184 Msa0379390:CDS 25.0%
! TATAATAAGAACAGAAACAG+GGG + chr3_1:80510166-80510185 Msa0379390:CDS 25.0%
! AAGAGGGTGAAATTTAATAT+CGG - chr3_1:80510269-80510288 None:intergenic 25.0%
!! AACGTGTGAATTTTATAGAT+AGG + chr3_1:80510315-80510334 Msa0379390:intron 25.0%
!! ACGTGTGAATTTTATAGATA+GGG + chr3_1:80510316-80510335 Msa0379390:intron 25.0%
!! GTAATTTTCTATGTCAAACT+CGG + chr3_1:80510565-80510584 Msa0379390:intron 25.0%
!! GATTTGATAGAATTGGTTTA+AGG + chr3_1:80510607-80510626 Msa0379390:intron 25.0%
! GAATATGATACAATTAGAGT+AGG + chr3_1:80510680-80510699 Msa0379390:intron 25.0%
!!! GATTTGTTAGAAATGGTTTA+CGG - chr3_1:80510754-80510773 None:intergenic 25.0%
! TGTTAGATATAGTTACTAGT+TGG - chr3_1:80510778-80510797 None:intergenic 25.0%
! CAGATAAACACATCAAATTA+AGG - chr3_1:80510920-80510939 None:intergenic 25.0%
! CAAACATTTCTTATGAAGTA+AGG + chr3_1:80511066-80511085 Msa0379390:CDS 25.0%
!!! AAATTTTAACCGCAATTTCT+TGG + chr3_1:80511321-80511340 Msa0379390:intron 25.0%
!!! GATATTTCTGCAGAATTTTA+TGG + chr3_1:80511390-80511409 Msa0379390:intron 25.0%
! TTAATTTCAAATGGTTAGCA+AGG + chr3_1:80511744-80511763 Msa0379390:three_prime_UTR 25.0%
! GATATGTTTATTGCTTTCTT+AGG - chr3_1:80511778-80511797 None:intergenic 25.0%
! TCTTCTTTATCTGTACTATA+TGG + chr3_1:80511868-80511887 Msa0379390:three_prime_UTR 25.0%
! CTTCTTTATCTGTACTATAT+GGG + chr3_1:80511869-80511888 Msa0379390:three_prime_UTR 25.0%
! TTCTTTATCTGTACTATATG+GGG + chr3_1:80511870-80511889 Msa0379390:three_prime_UTR 25.0%
! TTAAGAATAGGAGAAATCTT+AGG + chr3_1:80511895-80511914 Msa0379390:three_prime_UTR 25.0%
! TACAACACAAACAATATACA+TGG - chr3_1:80511928-80511947 None:intergenic 25.0%
TTTGTGGAAGATAATTGAGT+TGG - chr3_1:80509717-80509736 None:intergenic 30.0%
ATGGATAAACGAAGAGAATA+AGG - chr3_1:80509801-80509820 None:intergenic 30.0%
TGGTTGTAATAATAAGGGTT+GGG - chr3_1:80509839-80509858 None:intergenic 30.0%
TTGGTTGTAATAATAAGGGT+TGG - chr3_1:80509840-80509859 None:intergenic 30.0%
!! AGAATAAGAAGAGTGTTGTT+TGG - chr3_1:80509859-80509878 None:intergenic 30.0%
GATAAAAAACCTCAACATCA+AGG - chr3_1:80510034-80510053 None:intergenic 30.0%
!!! TTGTTTTTGTTTTGGCCTTT+TGG + chr3_1:80510127-80510146 Msa0379390:intron 30.0%
!!! TGTTTTTGTTTTGGCCTTTT+GGG + chr3_1:80510128-80510147 Msa0379390:intron 30.0%
ATTGAAAGCTTAAACCCAAA+AGG - chr3_1:80510145-80510164 None:intergenic 30.0%
AGAGGGTGAAATTTAATATC+GGG - chr3_1:80510268-80510287 None:intergenic 30.0%
GCTTTATCAAATCGAAAAGA+GGG - chr3_1:80510285-80510304 None:intergenic 30.0%
! AGCTTTATCAAATCGAAAAG+AGG - chr3_1:80510286-80510305 None:intergenic 30.0%
!! AATCGTTGTTATTTCGCAAT+AGG + chr3_1:80510430-80510449 Msa0379390:intron 30.0%
ATCAACAATGTTGTAACTTG+CGG - chr3_1:80510535-80510554 None:intergenic 30.0%
ACAGAGAGATTTGATAGAAT+TGG + chr3_1:80510600-80510619 Msa0379390:intron 30.0%
! TTGATAGAATTGGTTTAAGG+TGG + chr3_1:80510610-80510629 Msa0379390:intron 30.0%
CTTAGTTACTTGGATTATGA+AGG - chr3_1:80510711-80510730 None:intergenic 30.0%
!! AGTTGGAGATTTGTTAGAAA+TGG - chr3_1:80510761-80510780 None:intergenic 30.0%
! TGAAATTTTCACACCCATTA+AGG + chr3_1:80510807-80510826 Msa0379390:intron 30.0%
! GAAATTTTCACACCCATTAA+GGG + chr3_1:80510808-80510827 Msa0379390:intron 30.0%
CTGTTATCTTATCCCTTAAT+GGG - chr3_1:80510823-80510842 None:intergenic 30.0%
TCTGTTATCTTATCCCTTAA+TGG - chr3_1:80510824-80510843 None:intergenic 30.0%
! TTTTTATGTGTCTTCTGTTG+TGG + chr3_1:80510867-80510886 Msa0379390:intron 30.0%
TTATTCTTTGAATGCTACGT+AGG + chr3_1:80510941-80510960 Msa0379390:intron 30.0%
CAAATATGCTAAGCCTAAAA+AGG + chr3_1:80510989-80511008 Msa0379390:CDS 30.0%
AGCCTAAAAAGGAGAAAATA+CGG + chr3_1:80511000-80511019 Msa0379390:CDS 30.0%
! AATCAAAACGTTTGAAGCAA+GGG - chr3_1:80511556-80511575 None:intergenic 30.0%
! TTTGTTTCTTTGTGAACTTG+AGG + chr3_1:80511642-80511661 Msa0379390:three_prime_UTR 30.0%
TCTTTATCTGTACTATATGG+GGG + chr3_1:80511871-80511890 Msa0379390:three_prime_UTR 30.0%
GTTGAAAAGATTATTCTACG+TGG - chr3_1:80511967-80511986 None:intergenic 30.0%
TTTGTGGAAGATAATTGAGT+TGG - chr3_1:80509717-80509736 None:intergenic 30.0%
ATGGATAAACGAAGAGAATA+AGG - chr3_1:80509801-80509820 None:intergenic 30.0%
TGGTTGTAATAATAAGGGTT+GGG - chr3_1:80509839-80509858 None:intergenic 30.0%
TTGGTTGTAATAATAAGGGT+TGG - chr3_1:80509840-80509859 None:intergenic 30.0%
!! AGAATAAGAAGAGTGTTGTT+TGG - chr3_1:80509859-80509878 None:intergenic 30.0%
GATAAAAAACCTCAACATCA+AGG - chr3_1:80510034-80510053 None:intergenic 30.0%
!!! TTGTTTTTGTTTTGGCCTTT+TGG + chr3_1:80510127-80510146 Msa0379390:intron 30.0%
!!! TGTTTTTGTTTTGGCCTTTT+GGG + chr3_1:80510128-80510147 Msa0379390:intron 30.0%
ATTGAAAGCTTAAACCCAAA+AGG - chr3_1:80510145-80510164 None:intergenic 30.0%
AGAGGGTGAAATTTAATATC+GGG - chr3_1:80510268-80510287 None:intergenic 30.0%
GCTTTATCAAATCGAAAAGA+GGG - chr3_1:80510285-80510304 None:intergenic 30.0%
! AGCTTTATCAAATCGAAAAG+AGG - chr3_1:80510286-80510305 None:intergenic 30.0%
!! AATCGTTGTTATTTCGCAAT+AGG + chr3_1:80510430-80510449 Msa0379390:intron 30.0%
ATCAACAATGTTGTAACTTG+CGG - chr3_1:80510535-80510554 None:intergenic 30.0%
ACAGAGAGATTTGATAGAAT+TGG + chr3_1:80510600-80510619 Msa0379390:intron 30.0%
! TTGATAGAATTGGTTTAAGG+TGG + chr3_1:80510610-80510629 Msa0379390:intron 30.0%
CTTAGTTACTTGGATTATGA+AGG - chr3_1:80510711-80510730 None:intergenic 30.0%
!! AGTTGGAGATTTGTTAGAAA+TGG - chr3_1:80510761-80510780 None:intergenic 30.0%
! TGAAATTTTCACACCCATTA+AGG + chr3_1:80510807-80510826 Msa0379390:intron 30.0%
! GAAATTTTCACACCCATTAA+GGG + chr3_1:80510808-80510827 Msa0379390:intron 30.0%
CTGTTATCTTATCCCTTAAT+GGG - chr3_1:80510823-80510842 None:intergenic 30.0%
TCTGTTATCTTATCCCTTAA+TGG - chr3_1:80510824-80510843 None:intergenic 30.0%
! TTTTTATGTGTCTTCTGTTG+TGG + chr3_1:80510867-80510886 Msa0379390:intron 30.0%
TTATTCTTTGAATGCTACGT+AGG + chr3_1:80510941-80510960 Msa0379390:intron 30.0%
CAAATATGCTAAGCCTAAAA+AGG + chr3_1:80510989-80511008 Msa0379390:CDS 30.0%
AGCCTAAAAAGGAGAAAATA+CGG + chr3_1:80511000-80511019 Msa0379390:CDS 30.0%
! AATCAAAACGTTTGAAGCAA+GGG - chr3_1:80511556-80511575 None:intergenic 30.0%
! TTTGTTTCTTTGTGAACTTG+AGG + chr3_1:80511642-80511661 Msa0379390:three_prime_UTR 30.0%
TCTTTATCTGTACTATATGG+GGG + chr3_1:80511871-80511890 Msa0379390:three_prime_UTR 30.0%
GTTGAAAAGATTATTCTACG+TGG - chr3_1:80511967-80511986 None:intergenic 30.0%
GATGAAACCAAATGGATAAG+GGG - chr3_1:80509602-80509621 None:intergenic 35.0%
GGATGAAACCAAATGGATAA+GGG - chr3_1:80509603-80509622 None:intergenic 35.0%
TTCTCAATTGCTATGCTATG+GGG - chr3_1:80509624-80509643 None:intergenic 35.0%
CTTCTCAATTGCTATGCTAT+GGG - chr3_1:80509625-80509644 None:intergenic 35.0%
TCTTCTCAATTGCTATGCTA+TGG - chr3_1:80509626-80509645 None:intergenic 35.0%
!! GAAGATAATTGAGTTGGACA+TGG - chr3_1:80509711-80509730 None:intergenic 35.0%
ACGAAGAGAATAAGGATTGA+GGG - chr3_1:80509793-80509812 None:intergenic 35.0%
AACGAAGAGAATAAGGATTG+AGG - chr3_1:80509794-80509813 None:intergenic 35.0%
GGTTGTAATAATAAGGGTTG+GGG - chr3_1:80509838-80509857 None:intergenic 35.0%
CAAAGAACGAATATCTTCAG+TGG - chr3_1:80509991-80510010 None:intergenic 35.0%
! GCAACTGCTATTTGACAAAA+CGG - chr3_1:80510393-80510412 None:intergenic 35.0%
TATAGCACACTATAGCATAG+CGG + chr3_1:80510494-80510513 Msa0379390:intron 35.0%
CTTCTGTTGTGGAATTTACT+TGG + chr3_1:80510878-80510897 Msa0379390:intron 35.0%
GGAATTTACTTGGCATCTAT+AGG + chr3_1:80510888-80510907 Msa0379390:intron 35.0%
TTTACTTGGCATCTATAGGA+AGG + chr3_1:80510892-80510911 Msa0379390:intron 35.0%
TTACTTGGCATCTATAGGAA+GGG + chr3_1:80510893-80510912 Msa0379390:intron 35.0%
! AATGCTACGTAGGATTTTGA+CGG + chr3_1:80510951-80510970 Msa0379390:intron 35.0%
!!! CCTCAAGGAGTTTTTTGATT+CGG + chr3_1:80511097-80511116 Msa0379390:CDS 35.0%
!!! CTCAAGGAGTTTTTTGATTC+GGG + chr3_1:80511098-80511117 Msa0379390:CDS 35.0%
AGCTTCTTTCTTAGACTTGA+AGG - chr3_1:80511198-80511217 None:intergenic 35.0%
AAATTGGTGCAAGAAGCAAT+GGG - chr3_1:80511255-80511274 None:intergenic 35.0%
! TTCTGCAGAATTTTATGGGA+AGG + chr3_1:80511395-80511414 Msa0379390:intron 35.0%
! CAATCAAAACGTTTGAAGCA+AGG - chr3_1:80511557-80511576 None:intergenic 35.0%
CTATATGGGGGATTAAGAAT+AGG + chr3_1:80511883-80511902 Msa0379390:three_prime_UTR 35.0%
GATGAAACCAAATGGATAAG+GGG - chr3_1:80509602-80509621 None:intergenic 35.0%
GGATGAAACCAAATGGATAA+GGG - chr3_1:80509603-80509622 None:intergenic 35.0%
TTCTCAATTGCTATGCTATG+GGG - chr3_1:80509624-80509643 None:intergenic 35.0%
CTTCTCAATTGCTATGCTAT+GGG - chr3_1:80509625-80509644 None:intergenic 35.0%
TCTTCTCAATTGCTATGCTA+TGG - chr3_1:80509626-80509645 None:intergenic 35.0%
!! GAAGATAATTGAGTTGGACA+TGG - chr3_1:80509711-80509730 None:intergenic 35.0%
ACGAAGAGAATAAGGATTGA+GGG - chr3_1:80509793-80509812 None:intergenic 35.0%
AACGAAGAGAATAAGGATTG+AGG - chr3_1:80509794-80509813 None:intergenic 35.0%
GGTTGTAATAATAAGGGTTG+GGG - chr3_1:80509838-80509857 None:intergenic 35.0%
CAAAGAACGAATATCTTCAG+TGG - chr3_1:80509991-80510010 None:intergenic 35.0%
! GCAACTGCTATTTGACAAAA+CGG - chr3_1:80510393-80510412 None:intergenic 35.0%
TATAGCACACTATAGCATAG+CGG + chr3_1:80510494-80510513 Msa0379390:intron 35.0%
CTTCTGTTGTGGAATTTACT+TGG + chr3_1:80510878-80510897 Msa0379390:intron 35.0%
GGAATTTACTTGGCATCTAT+AGG + chr3_1:80510888-80510907 Msa0379390:intron 35.0%
TTTACTTGGCATCTATAGGA+AGG + chr3_1:80510892-80510911 Msa0379390:intron 35.0%
TTACTTGGCATCTATAGGAA+GGG + chr3_1:80510893-80510912 Msa0379390:intron 35.0%
! AATGCTACGTAGGATTTTGA+CGG + chr3_1:80510951-80510970 Msa0379390:intron 35.0%
!!! CCTCAAGGAGTTTTTTGATT+CGG + chr3_1:80511097-80511116 Msa0379390:CDS 35.0%
!!! CTCAAGGAGTTTTTTGATTC+GGG + chr3_1:80511098-80511117 Msa0379390:CDS 35.0%
AGCTTCTTTCTTAGACTTGA+AGG - chr3_1:80511198-80511217 None:intergenic 35.0%
AAATTGGTGCAAGAAGCAAT+GGG - chr3_1:80511255-80511274 None:intergenic 35.0%
! TTCTGCAGAATTTTATGGGA+AGG + chr3_1:80511395-80511414 Msa0379390:intron 35.0%
! CAATCAAAACGTTTGAAGCA+AGG - chr3_1:80511557-80511576 None:intergenic 35.0%
CTATATGGGGGATTAAGAAT+AGG + chr3_1:80511883-80511902 Msa0379390:three_prime_UTR 35.0%
! TTTTCCACCCCTTATCCATT+TGG + chr3_1:80509592-80509611 Msa0379390:five_prime_UTR 40.0%
GGGATGAAACCAAATGGATA+AGG - chr3_1:80509604-80509623 None:intergenic 40.0%
! GTTTCAGAGCATCTCAGTTT+GGG - chr3_1:80509659-80509678 None:intergenic 40.0%
! AGTTTCAGAGCATCTCAGTT+TGG - chr3_1:80509660-80509679 None:intergenic 40.0%
!! CTGAGATGCTCTGAAACTAA+TGG + chr3_1:80509662-80509681 Msa0379390:exon 40.0%
CTTGTCAAAGTCGAAAGAGT+TGG - chr3_1:80509757-80509776 None:intergenic 40.0%
TGGGGTATGAGTATGAGTAA+TGG - chr3_1:80509820-80509839 None:intergenic 40.0%
AACATTCTGAGCAAGTAACC+TGG - chr3_1:80509955-80509974 None:intergenic 40.0%
TACTTGCTCAGAATGTTCCA+TGG + chr3_1:80509958-80509977 Msa0379390:CDS 40.0%
TGGAAAAGTCCTTGATGTTG+AGG + chr3_1:80510022-80510041 Msa0379390:CDS 40.0%
GGTTTAGCGTTTGTGGAAAT+GGG + chr3_1:80510187-80510206 Msa0379390:CDS 40.0%
GGGTGTGAAAATTTCAGTGA+TGG - chr3_1:80510803-80510822 None:intergenic 40.0%
! GGCCGTATTTTCTCCTTTTT+AGG - chr3_1:80511005-80511024 None:intergenic 40.0%
AGTAAGGTCTAAAGACCTCA+AGG + chr3_1:80511082-80511101 Msa0379390:CDS 40.0%
CCGAATCAAAAAACTCCTTG+AGG - chr3_1:80511100-80511119 None:intergenic 40.0%
!!! GAGTTTTTTGATTCGGGAAC+TGG + chr3_1:80511104-80511123 Msa0379390:CDS 40.0%
!! TGGTAAAGTTGTTTCTGCAG+AGG + chr3_1:80511124-80511143 Msa0379390:CDS 40.0%
TCTTTCATGAGAACCCTAGA+CGG + chr3_1:80511150-80511169 Msa0379390:CDS 40.0%
GACACAAATCCATAACCAGA+TGG - chr3_1:80511176-80511195 None:intergenic 40.0%
GGTTACCTTTCCTTCAAACT+CGG - chr3_1:80511234-80511253 None:intergenic 40.0%
CAAATTGGTGCAAGAAGCAA+TGG - chr3_1:80511256-80511275 None:intergenic 40.0%
ACCGCAATTTCTTGGAGTTA+CGG + chr3_1:80511329-80511348 Msa0379390:intron 40.0%
TCCGTAACTCCAAGAAATTG+CGG - chr3_1:80511333-80511352 None:intergenic 40.0%
! ATTTTATGGGAAGGCCACTA+AGG + chr3_1:80511404-80511423 Msa0379390:CDS 40.0%
! TTTTATGGGAAGGCCACTAA+GGG + chr3_1:80511405-80511424 Msa0379390:CDS 40.0%
AGTTGAACAAACCGCTTACT+AGG - chr3_1:80511436-80511455 None:intergenic 40.0%
! TAGTAAGCGGTTTGTTCAAC+TGG + chr3_1:80511435-80511454 Msa0379390:CDS 40.0%
! TTTTCCACCCCTTATCCATT+TGG + chr3_1:80509592-80509611 Msa0379390:five_prime_UTR 40.0%
GGGATGAAACCAAATGGATA+AGG - chr3_1:80509604-80509623 None:intergenic 40.0%
! GTTTCAGAGCATCTCAGTTT+GGG - chr3_1:80509659-80509678 None:intergenic 40.0%
! AGTTTCAGAGCATCTCAGTT+TGG - chr3_1:80509660-80509679 None:intergenic 40.0%
!! CTGAGATGCTCTGAAACTAA+TGG + chr3_1:80509662-80509681 Msa0379390:exon 40.0%
CTTGTCAAAGTCGAAAGAGT+TGG - chr3_1:80509757-80509776 None:intergenic 40.0%
TGGGGTATGAGTATGAGTAA+TGG - chr3_1:80509820-80509839 None:intergenic 40.0%
AACATTCTGAGCAAGTAACC+TGG - chr3_1:80509955-80509974 None:intergenic 40.0%
TACTTGCTCAGAATGTTCCA+TGG + chr3_1:80509958-80509977 Msa0379390:CDS 40.0%
TGGAAAAGTCCTTGATGTTG+AGG + chr3_1:80510022-80510041 Msa0379390:CDS 40.0%
GGTTTAGCGTTTGTGGAAAT+GGG + chr3_1:80510187-80510206 Msa0379390:CDS 40.0%
GGGTGTGAAAATTTCAGTGA+TGG - chr3_1:80510803-80510822 None:intergenic 40.0%
! GGCCGTATTTTCTCCTTTTT+AGG - chr3_1:80511005-80511024 None:intergenic 40.0%
AGTAAGGTCTAAAGACCTCA+AGG + chr3_1:80511082-80511101 Msa0379390:CDS 40.0%
CCGAATCAAAAAACTCCTTG+AGG - chr3_1:80511100-80511119 None:intergenic 40.0%
!!! GAGTTTTTTGATTCGGGAAC+TGG + chr3_1:80511104-80511123 Msa0379390:CDS 40.0%
!! TGGTAAAGTTGTTTCTGCAG+AGG + chr3_1:80511124-80511143 Msa0379390:CDS 40.0%
TCTTTCATGAGAACCCTAGA+CGG + chr3_1:80511150-80511169 Msa0379390:CDS 40.0%
GACACAAATCCATAACCAGA+TGG - chr3_1:80511176-80511195 None:intergenic 40.0%
GGTTACCTTTCCTTCAAACT+CGG - chr3_1:80511234-80511253 None:intergenic 40.0%
CAAATTGGTGCAAGAAGCAA+TGG - chr3_1:80511256-80511275 None:intergenic 40.0%
ACCGCAATTTCTTGGAGTTA+CGG + chr3_1:80511329-80511348 Msa0379390:intron 40.0%
TCCGTAACTCCAAGAAATTG+CGG - chr3_1:80511333-80511352 None:intergenic 40.0%
! ATTTTATGGGAAGGCCACTA+AGG + chr3_1:80511404-80511423 Msa0379390:CDS 40.0%
! TTTTATGGGAAGGCCACTAA+GGG + chr3_1:80511405-80511424 Msa0379390:CDS 40.0%
AGTTGAACAAACCGCTTACT+AGG - chr3_1:80511436-80511455 None:intergenic 40.0%
! TAGTAAGCGGTTTGTTCAAC+TGG + chr3_1:80511435-80511454 Msa0379390:CDS 40.0%
GAAACCAAATGGATAAGGGG+TGG - chr3_1:80509599-80509618 None:intergenic 45.0%
GCTATGGGGATGAAACCAAA+TGG - chr3_1:80509610-80509629 None:intergenic 45.0%
! TTGGGTTTGTTCGGAAGTAG+AGG - chr3_1:80509895-80509914 None:intergenic 45.0%
! GGTGGTTACTTGGGTTTGTT+CGG - chr3_1:80509904-80509923 None:intergenic 45.0%
TTGTTCCTCGGTGGTTACTT+GGG - chr3_1:80509913-80509932 None:intergenic 45.0%
TTTGTTCCTCGGTGGTTACT+TGG - chr3_1:80509914-80509933 None:intergenic 45.0%
! GAACTCTTGGGTTTGTTCCT+CGG - chr3_1:80509925-80509944 None:intergenic 45.0%
CCTGGTAGTAGAGAACTCTT+GGG - chr3_1:80509937-80509956 None:intergenic 45.0%
ACCTGGTAGTAGAGAACTCT+TGG - chr3_1:80509938-80509957 None:intergenic 45.0%
TCTTCAGTGGTACTTGACCA+TGG - chr3_1:80509978-80509997 None:intergenic 45.0%
AAACAGGGGTTTAGCGTTTG+TGG + chr3_1:80510180-80510199 Msa0379390:CDS 45.0%
GGGTTTAGCGTTTGTGGAAA+TGG + chr3_1:80510186-80510205 Msa0379390:CDS 45.0%
CGGGCTTACATACATACGAT+TGG - chr3_1:80510249-80510268 None:intergenic 45.0%
GCGTCAAATAGCAGTCATAG+TGG + chr3_1:80510468-80510487 Msa0379390:intron 45.0%
AAATACGGCCATCAGTGGAA+CGG + chr3_1:80511015-80511034 Msa0379390:CDS 45.0%
TCTTGCCGAGTTTGAAGGAA+AGG + chr3_1:80511226-80511245 Msa0379390:CDS 45.0%
! TAAGCGGTTTGTTCAACTGG+CGG + chr3_1:80511438-80511457 Msa0379390:CDS 45.0%
! TTCTGAGTTGAGCGTCAATG+AGG + chr3_1:80511489-80511508 Msa0379390:CDS 45.0%
GAAACCAAATGGATAAGGGG+TGG - chr3_1:80509599-80509618 None:intergenic 45.0%
GCTATGGGGATGAAACCAAA+TGG - chr3_1:80509610-80509629 None:intergenic 45.0%
! TTGGGTTTGTTCGGAAGTAG+AGG - chr3_1:80509895-80509914 None:intergenic 45.0%
! GGTGGTTACTTGGGTTTGTT+CGG - chr3_1:80509904-80509923 None:intergenic 45.0%
TTGTTCCTCGGTGGTTACTT+GGG - chr3_1:80509913-80509932 None:intergenic 45.0%
TTTGTTCCTCGGTGGTTACT+TGG - chr3_1:80509914-80509933 None:intergenic 45.0%
! GAACTCTTGGGTTTGTTCCT+CGG - chr3_1:80509925-80509944 None:intergenic 45.0%
CCTGGTAGTAGAGAACTCTT+GGG - chr3_1:80509937-80509956 None:intergenic 45.0%
ACCTGGTAGTAGAGAACTCT+TGG - chr3_1:80509938-80509957 None:intergenic 45.0%
TCTTCAGTGGTACTTGACCA+TGG - chr3_1:80509978-80509997 None:intergenic 45.0%
AAACAGGGGTTTAGCGTTTG+TGG + chr3_1:80510180-80510199 Msa0379390:CDS 45.0%
GGGTTTAGCGTTTGTGGAAA+TGG + chr3_1:80510186-80510205 Msa0379390:CDS 45.0%
CGGGCTTACATACATACGAT+TGG - chr3_1:80510249-80510268 None:intergenic 45.0%
GCGTCAAATAGCAGTCATAG+TGG + chr3_1:80510468-80510487 Msa0379390:intron 45.0%
AAATACGGCCATCAGTGGAA+CGG + chr3_1:80511015-80511034 Msa0379390:CDS 45.0%
TCTTGCCGAGTTTGAAGGAA+AGG + chr3_1:80511226-80511245 Msa0379390:CDS 45.0%
! TAAGCGGTTTGTTCAACTGG+CGG + chr3_1:80511438-80511457 Msa0379390:CDS 45.0%
! TTCTGAGTTGAGCGTCAATG+AGG + chr3_1:80511489-80511508 Msa0379390:CDS 45.0%
ACAAACCCAAGTAACCACCG+AGG + chr3_1:80509905-80509924 Msa0379390:CDS 50.0%
CCCAAGAGTTCTCTACTACC+AGG + chr3_1:80509934-80509953 Msa0379390:CDS 50.0%
AGAGCTGCAGAAGCTTCTTC+AGG - chr3_1:80510217-80510236 None:intergenic 50.0%
GGAGAAAATACGGCCATCAG+TGG + chr3_1:80511010-80511029 Msa0379390:CDS 50.0%
! ATTGGCTTCCGTTCCACTGA+TGG - chr3_1:80511026-80511045 None:intergenic 50.0%
CATAACCAGATGGCCGTCTA+GGG - chr3_1:80511166-80511185 None:intergenic 50.0%
GAAGCTCTTGCCGAGTTTGA+AGG + chr3_1:80511221-80511240 Msa0379390:CDS 50.0%
! TTACTAGGTGCCACCCTTAG+TGG - chr3_1:80511421-80511440 None:intergenic 50.0%
TAAGGGTGGCACCTAGTAAG+CGG + chr3_1:80511422-80511441 Msa0379390:CDS 50.0%
ACAAACCCAAGTAACCACCG+AGG + chr3_1:80509905-80509924 Msa0379390:CDS 50.0%
CCCAAGAGTTCTCTACTACC+AGG + chr3_1:80509934-80509953 Msa0379390:CDS 50.0%
AGAGCTGCAGAAGCTTCTTC+AGG - chr3_1:80510217-80510236 None:intergenic 50.0%
GGAGAAAATACGGCCATCAG+TGG + chr3_1:80511010-80511029 Msa0379390:CDS 50.0%
! ATTGGCTTCCGTTCCACTGA+TGG - chr3_1:80511026-80511045 None:intergenic 50.0%
CATAACCAGATGGCCGTCTA+GGG - chr3_1:80511166-80511185 None:intergenic 50.0%
GAAGCTCTTGCCGAGTTTGA+AGG + chr3_1:80511221-80511240 Msa0379390:CDS 50.0%
! TTACTAGGTGCCACCCTTAG+TGG - chr3_1:80511421-80511440 None:intergenic 50.0%
TAAGGGTGGCACCTAGTAAG+CGG + chr3_1:80511422-80511441 Msa0379390:CDS 50.0%
! CTCTTGGGTTTGTTCCTCGG+TGG - chr3_1:80509922-80509941 None:intergenic 55.0%
CCATAACCAGATGGCCGTCT+AGG - chr3_1:80511167-80511186 None:intergenic 55.0%
CCTAGACGGCCATCTGGTTA+TGG + chr3_1:80511164-80511183 Msa0379390:CDS 55.0%
TATGGGAAGGCCACTAAGGG+TGG + chr3_1:80511408-80511427 Msa0379390:CDS 55.0%
! CTCTTGGGTTTGTTCCTCGG+TGG - chr3_1:80509922-80509941 None:intergenic 55.0%
CCATAACCAGATGGCCGTCT+AGG - chr3_1:80511167-80511186 None:intergenic 55.0%
CCTAGACGGCCATCTGGTTA+TGG + chr3_1:80511164-80511183 Msa0379390:CDS 55.0%
TATGGGAAGGCCACTAAGGG+TGG + chr3_1:80511408-80511427 Msa0379390:CDS 55.0%
GAGAACCCTAGACGGCCATC+TGG + chr3_1:80511158-80511177 Msa0379390:CDS 60.0%
! GCGGTTTGTTCAACTGGCGG+AGG + chr3_1:80511441-80511460 Msa0379390:CDS 60.0%
! AACTGGCGGAGGAGAGTGCA+GGG + chr3_1:80511452-80511471 Msa0379390:CDS 60.0%
GAGAACCCTAGACGGCCATC+TGG + chr3_1:80511158-80511177 Msa0379390:CDS 60.0%
! GCGGTTTGTTCAACTGGCGG+AGG + chr3_1:80511441-80511460 Msa0379390:CDS 60.0%
! AACTGGCGGAGGAGAGTGCA+GGG + chr3_1:80511452-80511471 Msa0379390:CDS 60.0%
! CAACTGGCGGAGGAGAGTGC+AGG + chr3_1:80511451-80511470 Msa0379390:CDS 65.0%
! CAACTGGCGGAGGAGAGTGC+AGG + chr3_1:80511451-80511470 Msa0379390:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 80509570 80512001 80509570 ID=Msa0379390;Name=Msa0379390
chr3_1 mRNA 80509570 80512001 80509570 ID=Msa0379390-mRNA-1;Parent=Msa0379390;Name=Msa0379390-mRNA-1;_AED=0.04;_eAED=0.04;_QI=111|1|1|1|0.75|0.6|5|377|292
chr3_1 exon 80509570 80510043 80509570 ID=Msa0379390-mRNA-1:exon:20113;Parent=Msa0379390-mRNA-1
chr3_1 exon 80510157 80510255 80510157 ID=Msa0379390-mRNA-1:exon:20114;Parent=Msa0379390-mRNA-1
chr3_1 exon 80510963 80511247 80510963 ID=Msa0379390-mRNA-1:exon:20115;Parent=Msa0379390-mRNA-1
chr3_1 exon 80511403 80511547 80511403 ID=Msa0379390-mRNA-1:exon:20116;Parent=Msa0379390-mRNA-1
chr3_1 exon 80511638 80512001 80511638 ID=Msa0379390-mRNA-1:exon:20117;Parent=Msa0379390-mRNA-1
chr3_1 five_prime_UTR 80509570 80509680 80509570 ID=Msa0379390-mRNA-1:five_prime_utr;Parent=Msa0379390-mRNA-1
chr3_1 CDS 80509681 80510043 80509681 ID=Msa0379390-mRNA-1:cds;Parent=Msa0379390-mRNA-1
chr3_1 CDS 80510157 80510255 80510157 ID=Msa0379390-mRNA-1:cds;Parent=Msa0379390-mRNA-1
chr3_1 CDS 80510963 80511247 80510963 ID=Msa0379390-mRNA-1:cds;Parent=Msa0379390-mRNA-1
chr3_1 CDS 80511403 80511534 80511403 ID=Msa0379390-mRNA-1:cds;Parent=Msa0379390-mRNA-1
chr3_1 three_prime_UTR 80511535 80511547 80511535 ID=Msa0379390-mRNA-1:three_prime_utr;Parent=Msa0379390-mRNA-1
chr3_1 three_prime_UTR 80511638 80512001 80511638 ID=Msa0379390-mRNA-1:three_prime_utr;Parent=Msa0379390-mRNA-1
Gene Sequence

>Msa0379390

ATGGCGCTACTACGTACTACTACTGTTCCATGTCCAACTCAATTATCTTCCACAAAACACCATGTAATAATAACCAACTCTTTCGACTTTGACAAGAACAAACATTATTCCCTCAATCCTTATTCTCTTCGTTTATCCATTACTCATACTCATACCCCAACCCTTATTATTACAACCAAACAACACTCTTCTTATTCTACTCTCACATTTGCCTCTACTTCCGAACAAACCCAAGTAACCACCGAGGAACAAACCCAAGAGTTCTCTACTACCAGGTTACTTGCTCAGAATGTTCCATGGTCAAGTACCACTGAAGATATTCGTTCTTTGTTTGAAAAATATGGAAAAGTCCTTGATGTTGAGCTTTCAATGTATAATAAGAACAGAAACAGGGGTTTAGCGTTTGTGGAAATGGGTTCTCCTGAAGAAGCTTCTGCAGCTCTCAATAGTCTCCAATCGTATGATTTTGACGGCCGCGTAATAAATATCAAATATGCTAAGCCTAAAAAGGAGAAAATACGGCCATCAGTGGAACGGAAGCCAATAACATATAACTTGTTTGTCGCAAACATTTCTTATGAAGTAAGGTCTAAAGACCTCAAGGAGTTTTTTGATTCGGGAACTGGTAAAGTTGTTTCTGCAGAGGTTATCTTTCATGAGAACCCTAGACGGCCATCTGGTTATGGATTTGTGTCCTTCAAGTCTAAGAAAGAAGCTGATGAAGCTCTTGCCGAGTTTGAAGGAAAGAATTTTATGGGAAGGCCACTAAGGGTGGCACCTAGTAAGCGGTTTGTTCAACTGGCGGAGGAGAGTGCAGGGTCTGAAGATACATCTTCTGAGTTGAGCGTCAATGAGGAAGAAACCGACAAAACTGATTGA

Protein sequence

>Msa0379390

MALLRTTTVPCPTQLSSTKHHVIITNSFDFDKNKHYSLNPYSLRLSITHTHTPTLIITTKQHSSYSTLTFASTSEQTQVTTEEQTQEFSTTRLLAQNVPWSSTTEDIRSLFEKYGKVLDVELSMYNKNRNRGLAFVEMGSPEEASAALNSLQSYDFDGRVINIKYAKPKKEKIRPSVERKPITYNLFVANISYEVRSKDLKEFFDSGTGKVVSAEVIFHENPRRPSGYGFVSFKSKKEADEALAEFEGKNFMGRPLRVAPSKRFVQLAEESAGSEDTSSELSVNEEETDKTD*