AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1356200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1356200 MtrunA17_Chr5g0399711 85.714 49 7 0 1 49 150 198 7.81e-23 87.8
Msa1356200 MtrunA17_Chr3g0102051 61.224 49 19 0 1 49 143 191 1.51e-15 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1356200 AT5G47190.1 79.592 49 10 0 1 49 150 198 2.72e-15 68.6
Msa1356200 AT4G17560.1 79.592 49 10 0 1 49 146 194 3.84e-15 67.8
Msa1356200 AT1G24240.1 57.143 49 21 0 1 49 144 192 8.69e-15 67.0
Msa1356200 AT4G11630.1 57.143 49 21 0 1 49 147 195 1.25e-14 66.6
Msa1356200 AT5G11750.1 57.143 49 21 0 1 49 151 199 1.29e-14 66.6
Msa1356200 AT5G11750.2 57.143 49 21 0 1 49 175 223 2.16e-14 66.2

Find 32 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTCTGCATGCTTATTTC+TGG 0.140535 tig0015539:-6111 Msa1356200:three_prime_UTR
TATGACAATACCTTTATAAA+TGG 0.225579 tig0015539:+7398 None:intergenic
TTTCTTAGAGAATATATTAA+AGG 0.251560 tig0015539:+6183 None:intergenic
GTCCTACTTGCAGGAAGTTC+CGG 0.324320 tig0015539:-7440 None:intergenic
TCATTTGAAAGTGGAGAATC+TGG 0.340991 tig0015539:+6330 Msa1356200:intergenic
CGTAGGTTATCCATTTATAA+AGG 0.341243 tig0015539:-7409 Msa1356200:CDS
TTAATATATTCTCTAAGAAA+TGG 0.343677 tig0015539:-6180 Msa1356200:three_prime_UTR
GTCTTGCCTGCCTGACCTTT+CGG 0.348430 tig0015539:+6377 Msa1356200:intergenic
ACTTTGATTTCTTTGATGTT+TGG 0.358077 tig0015539:+6409 Msa1356200:intergenic
CAAATTTCTCAATATTATCA+AGG 0.389659 tig0015539:+6140 Msa1356200:intergenic
TTCTCCACTTTCAAATGATA+AGG 0.412200 tig0015539:-6325 Msa1356200:CDS
CGCGTCCGAAGAATTATTGC+CGG 0.419736 tig0015539:-7343 Msa1356200:CDS
TTCTTAGAGAATATATTAAA+GGG 0.425998 tig0015539:+6184 Msa1356200:intergenic
GATAACCTACGTTTGTTCTC+CGG 0.447583 tig0015539:+7420 Msa1356200:intergenic
AAATCAAAATAAACAAATTG+TGG 0.467588 tig0015539:+6235 Msa1356200:intergenic
CGAAGAATTATTGCCGGCAC+AGG 0.476448 tig0015539:-7337 Msa1356200:CDS
CTGTGCCGGCAATAATTCTT+CGG 0.499754 tig0015539:+7337 Msa1356200:intergenic
TGGTAAAGCACCGAAAGGTC+AGG 0.504557 tig0015539:-6387 Msa1356200:CDS
AATCAAAATAAACAAATTGT+GGG 0.505914 tig0015539:+6236 Msa1356200:intergenic
TCAAAGTAATCTGCTGATCT+CGG 0.512334 tig0015539:-6274 Msa1356200:exon
GACTATCTCAACCCCTGTGC+CGG 0.526794 tig0015539:+7323 Msa1356200:intergenic
AAATTTCTCAATATTATCAA+GGG 0.530446 tig0015539:+6141 Msa1356200:intergenic
GTGACCTTATCATTTGAAAG+TGG 0.534354 tig0015539:+6321 Msa1356200:intergenic
GTCATATCAAGACAAAATGC+TGG 0.549163 tig0015539:-7382 Msa1356200:CDS
GAAGAATTATTGCCGGCACA+GGG 0.573107 tig0015539:-7336 Msa1356200:CDS
CATTTGAAAGTGGAGAATCT+GGG 0.592345 tig0015539:+6331 Msa1356200:intergenic
AAAGCACCGAAAGGTCAGGC+AGG 0.614155 tig0015539:-6383 Msa1356200:CDS
AAACATCAAAGAAATCAAAG+TGG 0.650615 tig0015539:-6407 Msa1356200:CDS
CAAAGTGGTAAAGCACCGAA+AGG 0.655009 tig0015539:-6392 Msa1356200:CDS
AAGAATTATTGCCGGCACAG+GGG 0.659206 tig0015539:-7335 Msa1356200:CDS
GCATAATGTGACAACTGACA+AGG 0.682976 tig0015539:+6051 Msa1356200:intergenic
AAGTTCCGGAGAACAAACGT+AGG 0.780898 tig0015539:-7426 Msa1356200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTATTTCATTTTCATATATT+TGG + tig0015539:6430-6449 Msa1356200:intergenic 15.0%
!! GTTTATGAAATATGATATTA+AGG - tig0015539:6882-6901 Msa1356200:intron 15.0%
!! AATCAAAATAAACAAATTGT+GGG + tig0015539:7252-7271 Msa1356200:intergenic 15.0%
!! AAATCAAAATAAACAAATTG+TGG + tig0015539:7253-7272 Msa1356200:intergenic 15.0%
!! TTCTTAGAGAATATATTAAA+GGG + tig0015539:7304-7323 Msa1356200:intergenic 15.0%
!! TTTCTTAGAGAATATATTAA+AGG + tig0015539:7305-7324 Msa1356200:intergenic 15.0%
!!! TTAATATATTCTCTAAGAAA+TGG - tig0015539:7305-7324 Msa1356200:intron 15.0%
!! AAATTTCTCAATATTATCAA+GGG + tig0015539:7347-7366 Msa1356200:intergenic 15.0%
!!! CTATTTCATTTTCATATATT+TGG + tig0015539:6430-6449 Msa1356200:intergenic 15.0%
!! GTTTATGAAATATGATATTA+AGG - tig0015539:6882-6901 Msa1356200:intron 15.0%
!! AATCAAAATAAACAAATTGT+GGG + tig0015539:7252-7271 Msa1356200:intergenic 15.0%
!! AAATCAAAATAAACAAATTG+TGG + tig0015539:7253-7272 Msa1356200:intergenic 15.0%
!! TTCTTAGAGAATATATTAAA+GGG + tig0015539:7304-7323 Msa1356200:intergenic 15.0%
!! TTTCTTAGAGAATATATTAA+AGG + tig0015539:7305-7324 Msa1356200:intergenic 15.0%
!!! TTAATATATTCTCTAAGAAA+TGG - tig0015539:7305-7324 Msa1356200:intron 15.0%
!! AAATTTCTCAATATTATCAA+GGG + tig0015539:7347-7366 Msa1356200:intergenic 15.0%
!! TATGACAATACCTTTATAAA+TGG + tig0015539:6090-6109 Msa1356200:intergenic 20.0%
!! TTTCTCCCAATAATTTAATA+GGG - tig0015539:6214-6233 Msa1356200:three_prime_UTR 20.0%
!! CTAATCCCTATTAAATTATT+GGG + tig0015539:6222-6241 Msa1356200:intergenic 20.0%
!! ACTAATCCCTATTAAATTAT+TGG + tig0015539:6223-6242 Msa1356200:intergenic 20.0%
!! AAAATAATGCATACGTTTAT+TGG + tig0015539:6827-6846 Msa1356200:intergenic 20.0%
!!! TTATAAAATGAAGCGTTTAT+CGG - tig0015539:6995-7014 Msa1356200:intron 20.0%
!! CAAATTTCTCAATATTATCA+AGG + tig0015539:7348-7367 Msa1356200:intergenic 20.0%
!! TATGACAATACCTTTATAAA+TGG + tig0015539:6090-6109 Msa1356200:intergenic 20.0%
!! TTTCTCCCAATAATTTAATA+GGG - tig0015539:6214-6233 Msa1356200:three_prime_UTR 20.0%
!! CTAATCCCTATTAAATTATT+GGG + tig0015539:6222-6241 Msa1356200:intergenic 20.0%
!! ACTAATCCCTATTAAATTAT+TGG + tig0015539:6223-6242 Msa1356200:intergenic 20.0%
!! AAAATAATGCATACGTTTAT+TGG + tig0015539:6827-6846 Msa1356200:intergenic 20.0%
!!! TTATAAAATGAAGCGTTTAT+CGG - tig0015539:6995-7014 Msa1356200:intron 20.0%
!! CAAATTTCTCAATATTATCA+AGG + tig0015539:7348-7367 Msa1356200:intergenic 20.0%
! CTATTAAATTATTGGGAGAA+AGG + tig0015539:6215-6234 Msa1356200:intergenic 25.0%
! CTTTCTCCCAATAATTTAAT+AGG - tig0015539:6213-6232 Msa1356200:three_prime_UTR 25.0%
! ACCTTTCATTGTTAAGAAAT+TGG - tig0015539:6570-6589 Msa1356200:intron 25.0%
! ACCAATTTCTTAACAATGAA+AGG + tig0015539:6574-6593 Msa1356200:intergenic 25.0%
!! CATTGTTAAGAAATTGGTTT+AGG - tig0015539:6576-6595 Msa1356200:intron 25.0%
!! AAGGATATTTTCATCTGTAT+TGG + tig0015539:6617-6636 Msa1356200:intergenic 25.0%
! ATATCCTTGATCTTACAAAT+TGG - tig0015539:6629-6648 Msa1356200:intron 25.0%
! GATATCATTAAACAACAACT+AGG + tig0015539:6736-6755 Msa1356200:intergenic 25.0%
!!! GTATGCATTATTTTTCTCTA+AGG - tig0015539:6833-6852 Msa1356200:intron 25.0%
!! ATTTTATAAGGCAAGGTAAT+GGG + tig0015539:6984-7003 Msa1356200:intergenic 25.0%
!! GATAAACGCTTCATTTTATA+AGG + tig0015539:6996-7015 Msa1356200:intergenic 25.0%
!! ACTTTGATTTCTTTGATGTT+TGG + tig0015539:7079-7098 Msa1356200:intergenic 25.0%
! AAACATCAAAGAAATCAAAG+TGG - tig0015539:7078-7097 Msa1356200:intron 25.0%
! CTATTAAATTATTGGGAGAA+AGG + tig0015539:6215-6234 Msa1356200:intergenic 25.0%
! CTTTCTCCCAATAATTTAAT+AGG - tig0015539:6213-6232 Msa1356200:three_prime_UTR 25.0%
! ACCTTTCATTGTTAAGAAAT+TGG - tig0015539:6570-6589 Msa1356200:intron 25.0%
! ACCAATTTCTTAACAATGAA+AGG + tig0015539:6574-6593 Msa1356200:intergenic 25.0%
!! CATTGTTAAGAAATTGGTTT+AGG - tig0015539:6576-6595 Msa1356200:intron 25.0%
!! AAGGATATTTTCATCTGTAT+TGG + tig0015539:6617-6636 Msa1356200:intergenic 25.0%
! ATATCCTTGATCTTACAAAT+TGG - tig0015539:6629-6648 Msa1356200:intron 25.0%
! GATATCATTAAACAACAACT+AGG + tig0015539:6736-6755 Msa1356200:intergenic 25.0%
!!! GTATGCATTATTTTTCTCTA+AGG - tig0015539:6833-6852 Msa1356200:intron 25.0%
!! ATTTTATAAGGCAAGGTAAT+GGG + tig0015539:6984-7003 Msa1356200:intergenic 25.0%
!! GATAAACGCTTCATTTTATA+AGG + tig0015539:6996-7015 Msa1356200:intergenic 25.0%
!! ACTTTGATTTCTTTGATGTT+TGG + tig0015539:7079-7098 Msa1356200:intergenic 25.0%
! AAACATCAAAGAAATCAAAG+TGG - tig0015539:7078-7097 Msa1356200:intron 25.0%
CGTAGGTTATCCATTTATAA+AGG - tig0015539:6077-6096 Msa1356200:three_prime_UTR 30.0%
ATTCAAGCAAATTAGCCAAA+TGG - tig0015539:6920-6939 Msa1356200:intron 30.0%
ACGTAATAATGTGATCCATT+TGG + tig0015539:6938-6957 Msa1356200:intergenic 30.0%
! CATTTTATAAGGCAAGGTAA+TGG + tig0015539:6985-7004 Msa1356200:intergenic 30.0%
TTCTCCACTTTCAAATGATA+AGG - tig0015539:7160-7179 Msa1356200:intron 30.0%
TTATTCTGCATGCTTATTTC+TGG - tig0015539:7374-7393 Msa1356200:CDS 30.0%
! GTAATGTTTTCATTAGTGCT+TGG + tig0015539:7407-7426 Msa1356200:intergenic 30.0%
CGTAGGTTATCCATTTATAA+AGG - tig0015539:6077-6096 Msa1356200:three_prime_UTR 30.0%
ATTCAAGCAAATTAGCCAAA+TGG - tig0015539:6920-6939 Msa1356200:intron 30.0%
ACGTAATAATGTGATCCATT+TGG + tig0015539:6938-6957 Msa1356200:intergenic 30.0%
! CATTTTATAAGGCAAGGTAA+TGG + tig0015539:6985-7004 Msa1356200:intergenic 30.0%
TTCTCCACTTTCAAATGATA+AGG - tig0015539:7160-7179 Msa1356200:intron 30.0%
TTATTCTGCATGCTTATTTC+TGG - tig0015539:7374-7393 Msa1356200:CDS 30.0%
! GTAATGTTTTCATTAGTGCT+TGG + tig0015539:7407-7426 Msa1356200:intergenic 30.0%
GTCATATCAAGACAAAATGC+TGG - tig0015539:6104-6123 Msa1356200:three_prime_UTR 35.0%
! ATTAGTACTGTCATTTGCAC+CGG - tig0015539:6237-6256 Msa1356200:three_prime_UTR 35.0%
CATCCAAAAGAAACATTCAC+CGG + tig0015539:6259-6278 Msa1356200:intergenic 35.0%
! ATCCAATTGCTGTTGTGATT+AGG - tig0015539:6300-6319 Msa1356200:CDS 35.0%
ATCCTAATCACAACAGCAAT+TGG + tig0015539:6305-6324 Msa1356200:intergenic 35.0%
TAGGATAGAAGAGTTCAAAC+TGG - tig0015539:6319-6338 Msa1356200:CDS 35.0%
AAGAGTTCAAACTGGAAGAT+GGG - tig0015539:6327-6346 Msa1356200:CDS 35.0%
AAACTGGAAGATGGGAATTT+GGG - tig0015539:6335-6354 Msa1356200:CDS 35.0%
! TGAAGTCCCTTTAAAGACAT+TGG - tig0015539:6400-6419 Msa1356200:CDS 35.0%
GGTCATCCAATGTCTTTAAA+GGG + tig0015539:6409-6428 Msa1356200:intergenic 35.0%
TGGTCATCCAATGTCTTTAA+AGG + tig0015539:6410-6429 Msa1356200:intergenic 35.0%
!! GCAAAGTTGCAGATTTTAAC+AGG + tig0015539:6550-6569 Msa1356200:intergenic 35.0%
GAGTCCAATTTGTAAGATCA+AGG + tig0015539:6636-6655 Msa1356200:intergenic 35.0%
GTTGGAAAGTCAAACAGAAA+GGG + tig0015539:6691-6710 Msa1356200:intergenic 35.0%
TGTTGGAAAGTCAAACAGAA+AGG + tig0015539:6692-6711 Msa1356200:intergenic 35.0%
! TGTTTGACTTTCCAACACTT+TGG - tig0015539:6695-6714 Msa1356200:intron 35.0%
!! AAAAGGCATTTCCAAAGTGT+TGG + tig0015539:6709-6728 Msa1356200:intergenic 35.0%
AACAACAACTAGGACTGAAA+AGG + tig0015539:6726-6745 Msa1356200:intergenic 35.0%
! CTCTTTCCTCTAAAAGAATG+AGG - tig0015539:6755-6774 Msa1356200:intron 35.0%
! TCTCAACCTCATTCTTTTAG+AGG + tig0015539:6764-6783 Msa1356200:intergenic 35.0%
GGAATCATGTTAGTGTCAAT+AGG + tig0015539:6963-6982 Msa1356200:intergenic 35.0%
! ACGCTTCATTTTATAAGGCA+AGG + tig0015539:6991-7010 Msa1356200:intergenic 35.0%
CATTTGAAAGTGGAGAATCT+GGG + tig0015539:7157-7176 Msa1356200:intergenic 35.0%
TCATTTGAAAGTGGAGAATC+TGG + tig0015539:7158-7177 Msa1356200:intergenic 35.0%
GTGACCTTATCATTTGAAAG+TGG + tig0015539:7167-7186 Msa1356200:intergenic 35.0%
TCAAAGTAATCTGCTGATCT+CGG - tig0015539:7211-7230 Msa1356200:intron 35.0%
GTCATATCAAGACAAAATGC+TGG - tig0015539:6104-6123 Msa1356200:three_prime_UTR 35.0%
! ATTAGTACTGTCATTTGCAC+CGG - tig0015539:6237-6256 Msa1356200:three_prime_UTR 35.0%
CATCCAAAAGAAACATTCAC+CGG + tig0015539:6259-6278 Msa1356200:intergenic 35.0%
! ATCCAATTGCTGTTGTGATT+AGG - tig0015539:6300-6319 Msa1356200:CDS 35.0%
ATCCTAATCACAACAGCAAT+TGG + tig0015539:6305-6324 Msa1356200:intergenic 35.0%
TAGGATAGAAGAGTTCAAAC+TGG - tig0015539:6319-6338 Msa1356200:CDS 35.0%
AAGAGTTCAAACTGGAAGAT+GGG - tig0015539:6327-6346 Msa1356200:CDS 35.0%
AAACTGGAAGATGGGAATTT+GGG - tig0015539:6335-6354 Msa1356200:CDS 35.0%
! TGAAGTCCCTTTAAAGACAT+TGG - tig0015539:6400-6419 Msa1356200:CDS 35.0%
GGTCATCCAATGTCTTTAAA+GGG + tig0015539:6409-6428 Msa1356200:intergenic 35.0%
TGGTCATCCAATGTCTTTAA+AGG + tig0015539:6410-6429 Msa1356200:intergenic 35.0%
!! GCAAAGTTGCAGATTTTAAC+AGG + tig0015539:6550-6569 Msa1356200:intergenic 35.0%
GAGTCCAATTTGTAAGATCA+AGG + tig0015539:6636-6655 Msa1356200:intergenic 35.0%
GTTGGAAAGTCAAACAGAAA+GGG + tig0015539:6691-6710 Msa1356200:intergenic 35.0%
TGTTGGAAAGTCAAACAGAA+AGG + tig0015539:6692-6711 Msa1356200:intergenic 35.0%
! TGTTTGACTTTCCAACACTT+TGG - tig0015539:6695-6714 Msa1356200:intron 35.0%
!! AAAAGGCATTTCCAAAGTGT+TGG + tig0015539:6709-6728 Msa1356200:intergenic 35.0%
AACAACAACTAGGACTGAAA+AGG + tig0015539:6726-6745 Msa1356200:intergenic 35.0%
! CTCTTTCCTCTAAAAGAATG+AGG - tig0015539:6755-6774 Msa1356200:intron 35.0%
! TCTCAACCTCATTCTTTTAG+AGG + tig0015539:6764-6783 Msa1356200:intergenic 35.0%
GGAATCATGTTAGTGTCAAT+AGG + tig0015539:6963-6982 Msa1356200:intergenic 35.0%
! ACGCTTCATTTTATAAGGCA+AGG + tig0015539:6991-7010 Msa1356200:intergenic 35.0%
CATTTGAAAGTGGAGAATCT+GGG + tig0015539:7157-7176 Msa1356200:intergenic 35.0%
TCATTTGAAAGTGGAGAATC+TGG + tig0015539:7158-7177 Msa1356200:intergenic 35.0%
GTGACCTTATCATTTGAAAG+TGG + tig0015539:7167-7186 Msa1356200:intergenic 35.0%
TCAAAGTAATCTGCTGATCT+CGG - tig0015539:7211-7230 Msa1356200:intron 35.0%
GATAACCTACGTTTGTTCTC+CGG + tig0015539:6068-6087 Msa1356200:intergenic 40.0%
!! AGAGTGAGGGTACTTACATT+GGG + tig0015539:6190-6209 Msa1356200:intergenic 40.0%
!! AAGAGTGAGGGTACTTACAT+TGG + tig0015539:6191-6210 Msa1356200:intergenic 40.0%
CACAACAGCAATTGGATACA+TGG + tig0015539:6297-6316 Msa1356200:intergenic 40.0%
GAAGAGTTCAAACTGGAAGA+TGG - tig0015539:6326-6345 Msa1356200:CDS 40.0%
CAAACTGGAAGATGGGAATT+TGG - tig0015539:6334-6353 Msa1356200:CDS 40.0%
TAACACAAAATGCAGCAGCT+TGG + tig0015539:6492-6511 Msa1356200:intergenic 40.0%
!! CAGATTTTAACAGGCAACCA+TGG + tig0015539:6541-6560 Msa1356200:intergenic 40.0%
GATAACCTACGTTTGTTCTC+CGG + tig0015539:6068-6087 Msa1356200:intergenic 40.0%
!! AGAGTGAGGGTACTTACATT+GGG + tig0015539:6190-6209 Msa1356200:intergenic 40.0%
!! AAGAGTGAGGGTACTTACAT+TGG + tig0015539:6191-6210 Msa1356200:intergenic 40.0%
CACAACAGCAATTGGATACA+TGG + tig0015539:6297-6316 Msa1356200:intergenic 40.0%
GAAGAGTTCAAACTGGAAGA+TGG - tig0015539:6326-6345 Msa1356200:CDS 40.0%
CAAACTGGAAGATGGGAATT+TGG - tig0015539:6334-6353 Msa1356200:CDS 40.0%
TAACACAAAATGCAGCAGCT+TGG + tig0015539:6492-6511 Msa1356200:intergenic 40.0%
!! CAGATTTTAACAGGCAACCA+TGG + tig0015539:6541-6560 Msa1356200:intergenic 40.0%
AAGTTCCGGAGAACAAACGT+AGG - tig0015539:6060-6079 Msa1356200:three_prime_UTR 45.0%
! CTGTGCCGGCAATAATTCTT+CGG + tig0015539:6151-6170 Msa1356200:intergenic 45.0%
GAAGAATTATTGCCGGCACA+GGG - tig0015539:6150-6169 Msa1356200:three_prime_UTR 45.0%
AAGAATTATTGCCGGCACAG+GGG - tig0015539:6151-6170 Msa1356200:three_prime_UTR 45.0%
!! GCACCGGTGAATGTTTCTTT+TGG - tig0015539:6253-6272 Msa1356200:three_prime_UTR 45.0%
! ATACATGGTGATGCACAGCA+AGG + tig0015539:6282-6301 Msa1356200:intergenic 45.0%
ATTGGACTCACTCACTCCAT+TGG - tig0015539:6647-6666 Msa1356200:intron 45.0%
GCACGATTACAACTCTCCAA+TGG + tig0015539:6666-6685 Msa1356200:intergenic 45.0%
!! CAAAGTGGTAAAGCACCGAA+AGG - tig0015539:7093-7112 Msa1356200:intron 45.0%
AAGTTCCGGAGAACAAACGT+AGG - tig0015539:6060-6079 Msa1356200:three_prime_UTR 45.0%
! CTGTGCCGGCAATAATTCTT+CGG + tig0015539:6151-6170 Msa1356200:intergenic 45.0%
GAAGAATTATTGCCGGCACA+GGG - tig0015539:6150-6169 Msa1356200:three_prime_UTR 45.0%
AAGAATTATTGCCGGCACAG+GGG - tig0015539:6151-6170 Msa1356200:three_prime_UTR 45.0%
!! GCACCGGTGAATGTTTCTTT+TGG - tig0015539:6253-6272 Msa1356200:three_prime_UTR 45.0%
! ATACATGGTGATGCACAGCA+AGG + tig0015539:6282-6301 Msa1356200:intergenic 45.0%
ATTGGACTCACTCACTCCAT+TGG - tig0015539:6647-6666 Msa1356200:intron 45.0%
GCACGATTACAACTCTCCAA+TGG + tig0015539:6666-6685 Msa1356200:intergenic 45.0%
!! CAAAGTGGTAAAGCACCGAA+AGG - tig0015539:7093-7112 Msa1356200:intron 45.0%
CGCGTCCGAAGAATTATTGC+CGG - tig0015539:6143-6162 Msa1356200:three_prime_UTR 50.0%
CGAAGAATTATTGCCGGCAC+AGG - tig0015539:6149-6168 Msa1356200:three_prime_UTR 50.0%
TGGGAGAAAGGCAAGAGTGA+GGG + tig0015539:6203-6222 Msa1356200:intergenic 50.0%
TTGGGAGAAAGGCAAGAGTG+AGG + tig0015539:6204-6223 Msa1356200:intergenic 50.0%
TGTCATGCCTATGCCAGTAC+TGG - tig0015539:6513-6532 Msa1356200:intron 50.0%
!! CATGGTACCAGTACTGGCAT+AGG + tig0015539:6523-6542 Msa1356200:intergenic 50.0%
!! CTATGCCAGTACTGGTACCA+TGG - tig0015539:6521-6540 Msa1356200:intron 50.0%
!! TGGTAAAGCACCGAAAGGTC+AGG - tig0015539:7098-7117 Msa1356200:intron 50.0%
CGCGTCCGAAGAATTATTGC+CGG - tig0015539:6143-6162 Msa1356200:three_prime_UTR 50.0%
CGAAGAATTATTGCCGGCAC+AGG - tig0015539:6149-6168 Msa1356200:three_prime_UTR 50.0%
TGGGAGAAAGGCAAGAGTGA+GGG + tig0015539:6203-6222 Msa1356200:intergenic 50.0%
TTGGGAGAAAGGCAAGAGTG+AGG + tig0015539:6204-6223 Msa1356200:intergenic 50.0%
TGTCATGCCTATGCCAGTAC+TGG - tig0015539:6513-6532 Msa1356200:intron 50.0%
!! CATGGTACCAGTACTGGCAT+AGG + tig0015539:6523-6542 Msa1356200:intergenic 50.0%
!! CTATGCCAGTACTGGTACCA+TGG - tig0015539:6521-6540 Msa1356200:intron 50.0%
!! TGGTAAAGCACCGAAAGGTC+AGG - tig0015539:7098-7117 Msa1356200:intron 50.0%
GACTATCTCAACCCCTGTGC+CGG + tig0015539:6165-6184 Msa1356200:intergenic 55.0%
GGCAACCATGGTACCAGTAC+TGG + tig0015539:6529-6548 Msa1356200:intergenic 55.0%
!! AAAGCACCGAAAGGTCAGGC+AGG - tig0015539:7102-7121 Msa1356200:intron 55.0%
GTCTTGCCTGCCTGACCTTT+CGG + tig0015539:7111-7130 Msa1356200:intergenic 55.0%
GACTATCTCAACCCCTGTGC+CGG + tig0015539:6165-6184 Msa1356200:intergenic 55.0%
GGCAACCATGGTACCAGTAC+TGG + tig0015539:6529-6548 Msa1356200:intergenic 55.0%
!! AAAGCACCGAAAGGTCAGGC+AGG - tig0015539:7102-7121 Msa1356200:intron 55.0%
GTCTTGCCTGCCTGACCTTT+CGG + tig0015539:7111-7130 Msa1356200:intergenic 55.0%
Chromosome Type Strat End Strand Name
tig0015539 gene 6059 7448 6059 ID=Msa1356200;Name=Msa1356200
tig0015539 mRNA 6059 7448 6059 ID=Msa1356200-mRNA-1;Parent=Msa1356200;Name=Msa1356200-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0.5|1|0|0.5|2|221|93
tig0015539 exon 6059 6438 6059 ID=Msa1356200-mRNA-1:exon:9783;Parent=Msa1356200-mRNA-1
tig0015539 exon 7326 7448 7326 ID=Msa1356200-mRNA-1:exon:9782;Parent=Msa1356200-mRNA-1
tig0015539 CDS 7326 7448 7326 ID=Msa1356200-mRNA-1:cds;Parent=Msa1356200-mRNA-1
tig0015539 CDS 6280 6438 6280 ID=Msa1356200-mRNA-1:cds;Parent=Msa1356200-mRNA-1
tig0015539 three_prime_UTR 6059 6279 6059 ID=Msa1356200-mRNA-1:three_prime_utr;Parent=Msa1356200-mRNA-1
Gene Sequence

>Msa1356200

GAAGTTCCGGAGAACAAACGTAGGTTATCCATTTATAAAGGTATTGTCATATCAAGACAAAATGCTGGTATTCACACGACTATTCGCGTCCGAAGAATTATTGCCGGCACAGGGGTTGAGATATTACTCACCAAACATCAAAGAAATCAAAGTGGTAAAGCACCGAAAGGTCAGGCAGGCAAGACTGTACTATCTAAAAGACAAGCTTCCCAGATTCTCCACTTTCAAATGATAAGGTCACACGCTGTTCATCATGTTCTTATTCTCAAAGTAATCTGCTGA

Protein sequence

>Msa1356200

EVPENKRRLSIYKGIVISRQNAGIHTTIRVRRIIAGTGVEILLTKHQRNQSGKAPKGQAGKTVLSKRQASQILHFQMIRSHAVHHVLILKVIC*