AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0313800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0313800 MtrunA17_Chr2g0283631 93.919 148 5 2 1 148 1 144 1.17e-77 226
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0313800 AT1G29070.1 61.321 106 34 3 44 148 56 155 2.36e-29 105

Find 33 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAAATGCAGACAAGTTTA+AGG 0.163360 2_4:+9248241 None:intergenic
TTCCACTCTTCTACCATTTC+AGG 0.167216 2_4:-9250725 Msa0313800:intron
AAGCAATGGAGAACGAAATT+TGG 0.248963 2_4:+9250793 None:intergenic
AAATGCAAGATTAGACTTGA+TGG 0.349270 2_4:-9248110 Msa0313800:three_prime_UTR
TCCAGGTTTGTCACTGGGAT+TGG 0.354922 2_4:-9248536 Msa0313800:intron
CCATGTCCAGGTTTGTCACT+GGG 0.366798 2_4:-9248541 Msa0313800:intron
TGTCTTCTAGGTCCAACATT+AGG 0.373666 2_4:+9248505 None:intergenic
TCCATGTCCAGGTTTGTCAC+TGG 0.393144 2_4:-9248542 Msa0313800:intron
GCCACTATTTGCGTGGCTCT+TGG 0.405290 2_4:+9248309 None:intergenic
GAGTGGAAAGAGAGAGAAGA+AGG 0.436096 2_4:+9250740 None:intergenic
AAACGAATGAGCACAACAAC+TGG 0.446755 2_4:-9248382 Msa0313800:CDS
GAACTGAGAGAGATTGAAGA+TGG 0.451682 2_4:+9250818 None:intergenic
GTTGGACCTAGAAGACAAAA+TGG 0.465141 2_4:-9248499 Msa0313800:CDS
AAAATTTATCGGTCAAAATA+CGG 0.469035 2_4:+9248032 None:intergenic
TAGAAGACAAAATGGTCGTC+TGG 0.490410 2_4:-9248491 Msa0313800:CDS
AGTGGGTGCTCTGAATTTCA+TGG 0.501238 2_4:+9250859 None:intergenic
ACCAAGAGCCACGCAAATAG+TGG 0.502785 2_4:-9248310 Msa0313800:CDS
GAAAGAGAGAGAAGAAGGAG+AGG 0.509500 2_4:+9250745 None:intergenic
AAGTAGATCACGAAAATCAT+TGG 0.511560 2_4:-9248425 Msa0313800:CDS
AGAGGAAAGAGAAGAAGTGA+AGG 0.513017 2_4:+9250763 None:intergenic
TTGCGTGGCTCTTGGTGCAA+AGG 0.521900 2_4:+9248317 None:intergenic
TTGTTGTGCTCATTCGTTTG+CGG 0.530347 2_4:+9248386 None:intergenic
AAATCATTGGCACGCACTCA+TGG 0.536974 2_4:-9248412 Msa0313800:CDS
GTGAAGGAGCAATGAAGCAA+TGG 0.546159 2_4:+9250779 None:intergenic
CAATGGAGAACGAAATTTGG+AGG 0.554985 2_4:+9250796 None:intergenic
CTGAATTTCATGGATATCAA+AGG 0.555430 2_4:+9250869 None:intergenic
CGTCTGGTTATAGTAGCAGC+AGG 0.557576 2_4:-9248475 Msa0313800:CDS
TTGGACTTGAAACCTAATGT+TGG 0.565813 2_4:-9248517 Msa0313800:CDS
ATTAAAGCGACGACGCGCCA+AGG 0.568139 2_4:-9248350 Msa0313800:CDS
TACCTGAAATGGTAGAAGAG+TGG 0.590029 2_4:+9250723 None:intergenic
ACTATTTGCCACTATTTGCG+TGG 0.627313 2_4:+9248302 None:intergenic
TTAAAGCGACGACGCGCCAA+GGG 0.641870 2_4:-9248349 Msa0313800:CDS
TTTGAAGAAGCAGTGAAAGT+GGG 0.659697 2_4:+9250842 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAAAATGTTTTATTGT+TGG - chr2_4:9248625-9248644 Msa0313800:intron 10.0%
!!! AAAAAAAATGTTTTATTGTT+GGG - chr2_4:9248626-9248645 Msa0313800:intron 10.0%
!!! ATGTTTTTCTAAAATAAATT+AGG + chr2_4:9249432-9249451 None:intergenic 10.0%
!!! TACTTTTCTTTTTTAAATTA+CGG + chr2_4:9249465-9249484 None:intergenic 10.0%
!!! AGTAGAAAAATTATTTTAAT+TGG - chr2_4:9249668-9249687 Msa0313800:intron 10.0%
!! ATTTGAGAAAATAAAAAATT+TGG + chr2_4:9250207-9250226 None:intergenic 10.0%
!!! TTTAAAACTTGTATTATTTT+AGG - chr2_4:9250825-9250844 Msa0313800:CDS 10.0%
!! AAAAAAACAAGAAATTAAGT+TGG + chr2_4:9248307-9248326 None:intergenic 15.0%
!!! ACATGTTTTATTTTTGTTAT+TGG - chr2_4:9248565-9248584 Msa0313800:intron 15.0%
!!! CACTTTTCATTTTTAAATTA+CGG - chr2_4:9248879-9248898 Msa0313800:intron 15.0%
!! GAAAACTAAAATAAACATAA+GGG + chr2_4:9249206-9249225 None:intergenic 15.0%
!! TGAAAACTAAAATAAACATA+AGG + chr2_4:9249205-9249224 None:intergenic 15.0%
!! GAAAACTAAAATAAACATAA+GGG + chr2_4:9249206-9249225 None:intergenic 15.0%
!! TGAAAACTAAAATAAACATA+AGG + chr2_4:9249205-9249224 None:intergenic 15.0%
!! GAAAACTAAAATAAACATAA+GGG + chr2_4:9249206-9249225 None:intergenic 15.0%
!! TGAAAACTAAAATAAACATA+AGG + chr2_4:9249205-9249224 None:intergenic 15.0%
!! TGAAAACTAAAATAAACATA+AGG - chr2_4:9249205-9249224 Msa0313800:intron 15.0%
!! GAAAACTAAAATAAACATAA+GGG - chr2_4:9249206-9249225 Msa0313800:intron 15.0%
!! TGAAAACTAAAATAAACATA+AGG - chr2_4:9249205-9249224 Msa0313800:intron 15.0%
!! GAAAACTAAAATAAACATAA+GGG - chr2_4:9249206-9249225 Msa0313800:intron 15.0%
!! TGAAAACTAAAATAAACATA+AGG - chr2_4:9249205-9249224 Msa0313800:intron 15.0%
!! GAAAACTAAAATAAACATAA+GGG - chr2_4:9249206-9249225 Msa0313800:intron 15.0%
!!! GTTTATTTTAGTTTTCAAAT+TGG + chr2_4:9249384-9249403 None:intergenic 15.0%
!! TGAAAACTAAAATAAACATA+AGG - chr2_4:9249205-9249224 Msa0313800:intron 15.0%
!! GAAAACTAAAATAAACATAA+GGG - chr2_4:9249206-9249225 Msa0313800:intron 15.0%
!!! TTATTTTCTCAAATTATGAT+CGG - chr2_4:9250213-9250232 Msa0313800:intron 15.0%
!! ATATAGTTAAAAAAATTGTC+CGG - chr2_4:9250396-9250415 Msa0313800:intron 15.0%
!!! TACACAAATATAATACTTTT+AGG + chr2_4:9250723-9250742 None:intergenic 15.0%
!!! AATACAAGTTTTAAACATAA+AGG + chr2_4:9250820-9250839 None:intergenic 15.0%
!!! TTTTTTGTGTGATTGAAATT+TGG - chr2_4:9248324-9248343 Msa0313800:CDS 20.0%
!!! TTTTAATTCTAACCAACATA+AGG - chr2_4:9248403-9248422 Msa0313800:CDS 20.0%
!! TTAAACATAATCTGATACTT+AGG + chr2_4:9248494-9248513 None:intergenic 20.0%
!! ACAAAAATAAAACATGTTTG+AGG + chr2_4:9248562-9248581 None:intergenic 20.0%
!!! TTATTTTTGTTATTGGTTGT+TGG - chr2_4:9248572-9248591 Msa0313800:intron 20.0%
!!! TCATTTAGTTACATTCTTTT+AGG - chr2_4:9248811-9248830 Msa0313800:intron 20.0%
!!! CATTTAGTTACATTCTTTTA+GGG - chr2_4:9248812-9248831 Msa0313800:intron 20.0%
!! TTCAATCACACTTAATTTAT+TGG - chr2_4:9248962-9248981 Msa0313800:intron 20.0%
!!! GTTTATTTTAGTTTTCAAGT+TGG - chr2_4:9249010-9249029 Msa0313800:intron 20.0%
!!! TGAAAACTTTTAAAACGTAA+GGG + chr2_4:9249066-9249085 None:intergenic 20.0%
!!! TTGAAAACTTTTAAAACGTA+AGG + chr2_4:9249067-9249086 None:intergenic 20.0%
!!! GTTTATTTTAGTTTTCAAGT+TGG - chr2_4:9249010-9249029 Msa0313800:intron 20.0%
!!! GTTTATTTTAGTTTTCAAGT+TGG - chr2_4:9249010-9249029 Msa0313800:intron 20.0%
!!! GTTTATTTTAGTTTTCAAGT+TGG + chr2_4:9249010-9249029 None:intergenic 20.0%
!!! GTTTATTTTAGTTTTCAAGT+TGG + chr2_4:9249010-9249029 None:intergenic 20.0%
!!! GTTTATTTTAGTTTTCAAGT+TGG + chr2_4:9249010-9249029 None:intergenic 20.0%
!!! GTTTATTTTAGTTTTCAAGT+TGG + chr2_4:9249010-9249029 None:intergenic 20.0%
!! TGAAAACTAAAATAAACGTA+TGG - chr2_4:9249327-9249346 Msa0313800:intron 20.0%
!! GAAAACTAAAATAAACGTAT+GGG - chr2_4:9249328-9249347 Msa0313800:intron 20.0%
!! TTGAAACTTTCAAAACATAA+GGG - chr2_4:9249357-9249376 Msa0313800:intron 20.0%
!! AAAAAACATTTCAATCTTAG+AGG + chr2_4:9250064-9250083 None:intergenic 20.0%
!!! TCTTCTTATTTTCATAACAA+TGG - chr2_4:9250783-9250802 Msa0313800:CDS 20.0%
! AACTCAAAAAAAGAGGATAA+TGG - chr2_4:9248073-9248092 Msa0313800:three_prime_UTR 25.0%
!!! ATTAAGTTGGAAAAGGAAAA+AGG + chr2_4:9248294-9248313 None:intergenic 25.0%
!!! ACAAGAAATTAAGTTGGAAA+AGG + chr2_4:9248301-9248320 None:intergenic 25.0%
!! GTTTAAGCTTTAGTTAATAG+CGG - chr2_4:9248346-9248365 Msa0313800:CDS 25.0%
!! ATAGCGGTTGAATTTTTAAT+TGG - chr2_4:9248362-9248381 Msa0313800:CDS 25.0%
! TTGAAACTTTCAAAACGTAA+GGG + chr2_4:9249297-9249316 None:intergenic 25.0%
!!! CGTTTTAAAAGTTTTCAAGT+TGG - chr2_4:9249069-9249088 Msa0313800:intron 25.0%
! TTGAAACTTTCAAAACGTAA+GGG + chr2_4:9249297-9249316 None:intergenic 25.0%
! TTGAAACTTTCAAAACGTAA+GGG - chr2_4:9249297-9249316 Msa0313800:intron 25.0%
!!! ATGTTTTGAAAGTTTCAAGT+TGG + chr2_4:9249355-9249374 None:intergenic 25.0%
! CTTGAAACTTTCAAAACATA+AGG - chr2_4:9249356-9249375 Msa0313800:intron 25.0%
! ACAATAAGAAAATAACCCAA+GGG + chr2_4:9249522-9249541 None:intergenic 25.0%
! AACAATAAGAAAATAACCCA+AGG + chr2_4:9249523-9249542 None:intergenic 25.0%
!!! CAAACTAGTTCTATTCAATT+CGG + chr2_4:9249602-9249621 None:intergenic 25.0%
! AAAACTGAATTGAAACATAC+CGG + chr2_4:9249634-9249653 None:intergenic 25.0%
!!! ACATTATCATCATTGATTCT+AGG - chr2_4:9249783-9249802 Msa0313800:intron 25.0%
! ACATTATCATCTTTGATTCT+AGG - chr2_4:9249831-9249850 Msa0313800:intron 25.0%
! TCATTGTCAAGTTATTTACA+TGG + chr2_4:9250102-9250121 None:intergenic 25.0%
!! TTGTAGTTCTTTTGCAATAA+TGG - chr2_4:9250326-9250345 Msa0313800:intron 25.0%
GTAGCAAAACTCAAAAAAAG+AGG - chr2_4:9248066-9248085 Msa0313800:three_prime_UTR 30.0%
CTGAATTTCATGGATATCAA+AGG + chr2_4:9248125-9248144 None:intergenic 30.0%
! TTGTTGGTTAGTTATGCAAT+TGG - chr2_4:9248588-9248607 Msa0313800:intron 30.0%
! TGGAATGAAGGTTTCATTTT+TGG - chr2_4:9248678-9248697 Msa0313800:intron 30.0%
TTATGCTTCTGCATTTGTAA+TGG - chr2_4:9248729-9248748 Msa0313800:intron 30.0%
! TCTGCATTTGTAATGGAAAA+TGG - chr2_4:9248736-9248755 Msa0313800:intron 30.0%
! CTGCATTTGTAATGGAAAAT+GGG - chr2_4:9248737-9248756 Msa0313800:intron 30.0%
! TGCATTTGTAATGGAAAATG+GGG - chr2_4:9248738-9248757 Msa0313800:intron 30.0%
TGTAACTAAATGAACAGCAT+AGG + chr2_4:9248804-9248823 None:intergenic 30.0%
!! TATTGGCTTAATTGCATGTT+TGG - chr2_4:9248979-9248998 Msa0313800:intron 30.0%
CTTGAAACTTTCAAAACGTA+AGG + chr2_4:9249296-9249315 None:intergenic 30.0%
!!! ACGTTTTGAAAGTTTCAAGT+TGG - chr2_4:9249039-9249058 Msa0313800:intron 30.0%
CTTGAAACTTTCAAAACGTA+AGG + chr2_4:9249296-9249315 None:intergenic 30.0%
!!! ACGTTTTGAAAGTTTCAAGT+TGG - chr2_4:9249039-9249058 Msa0313800:intron 30.0%
CTTGAAACTTTCAAAACGTA+AGG - chr2_4:9249296-9249315 Msa0313800:intron 30.0%
ATTAGGCTTAATTGCATGTT+TGG + chr2_4:9249415-9249434 None:intergenic 30.0%
! AACTAGTTTGAATGTAGTAC+CGG - chr2_4:9249612-9249631 Msa0313800:intron 30.0%
! TGTTGATATTGCTTTAGCTT+TGG - chr2_4:9249746-9249765 Msa0313800:intron 30.0%
!!! TAGGACGTTTATTTTTGTGT+TGG - chr2_4:9249802-9249821 Msa0313800:intron 30.0%
!!! CGTTTATTTTTGTGTTGGTT+TGG - chr2_4:9249807-9249826 Msa0313800:intron 30.0%
!!! TAGGACGTTTATTTTTGTGT+TGG - chr2_4:9249802-9249821 Msa0313800:intron 30.0%
GACTTCAATGATCTTTACAA+AGG + chr2_4:9250021-9250040 None:intergenic 30.0%
! CATTTCAATCTTAGAGGTAT+TGG + chr2_4:9250058-9250077 None:intergenic 30.0%
!!! AAATGTTTTTTCAACTGCCA+AGG - chr2_4:9250073-9250092 Msa0313800:intron 30.0%
AGTTATTTACATGGAATCCT+TGG + chr2_4:9250093-9250112 None:intergenic 30.0%
! ACTTCATGTCAAAGTTTGTT+TGG - chr2_4:9250151-9250170 Msa0313800:intron 30.0%
AAATCAAGTCAAGCTAAATC+CGG + chr2_4:9250418-9250437 None:intergenic 30.0%
AAGTAGATCACGAAAATCAT+TGG - chr2_4:9250566-9250585 Msa0313800:intron 30.0%
TTGAAATGCAGACAAGTTTA+AGG + chr2_4:9250753-9250772 None:intergenic 30.0%
!!! TTTTTTTTTTTGCAGCACAC+TGG + chr2_4:9250864-9250883 None:intergenic 30.0%
AAATGCAAGATTAGACTTGA+TGG - chr2_4:9250881-9250900 Msa0313800:CDS 30.0%
! TGAGTTTTGCTACGTGTTTT+CGG + chr2_4:9248059-9248078 None:intergenic 35.0%
TTTGAAGAAGCAGTGAAAGT+GGG + chr2_4:9248152-9248171 None:intergenic 35.0%
!! TTTTGAAGAAGCAGTGAAAG+TGG + chr2_4:9248153-9248172 None:intergenic 35.0%
AAGCAATGGAGAACGAAATT+TGG + chr2_4:9248201-9248220 None:intergenic 35.0%
!! AAGGAAAAAGGTACCTGAAA+TGG + chr2_4:9248282-9248301 None:intergenic 35.0%
TCTAACCAACATAAGGTTAG+TGG - chr2_4:9248410-9248429 Msa0313800:CDS 35.0%
CTAACCAACATAAGGTTAGT+GGG - chr2_4:9248411-9248430 Msa0313800:CDS 35.0%
GGTTTGATTGAACTTGACTA+TGG - chr2_4:9248647-9248666 Msa0313800:intron 35.0%
TTGATTGAACTTGACTATGG+TGG - chr2_4:9248650-9248669 Msa0313800:intron 35.0%
!!! ACATTCTTTTAGGGTGTGTT+TGG - chr2_4:9248821-9248840 Msa0313800:intron 35.0%
!! TCAAGTTGGTCCAAAACATA+AGG - chr2_4:9249174-9249193 Msa0313800:intron 35.0%
!! CAAGTTGGTCCAAAACATAA+GGG - chr2_4:9249175-9249194 Msa0313800:intron 35.0%
!! TGATATTGCTTTAGCTTTGG+TGG - chr2_4:9249749-9249768 Msa0313800:intron 35.0%
!!! ACGTTTATTTTTGTGTTGGC+TGG - chr2_4:9249854-9249873 Msa0313800:intron 35.0%
GCGACTTAAAGTAAGGAATT+TGG - chr2_4:9249928-9249947 Msa0313800:intron 35.0%
AAGTGTCAGTACTGCAAAAA+TGG + chr2_4:9250135-9250154 None:intergenic 35.0%
!! CAAATTATGATCGGTGTCAA+CGG - chr2_4:9250222-9250241 Msa0313800:intron 35.0%
!! AAATTATGATCGGTGTCAAC+GGG - chr2_4:9250223-9250242 Msa0313800:intron 35.0%
! GCTTTGTTGGAAATTGTATG+CGG - chr2_4:9250281-9250300 Msa0313800:intron 35.0%
ATGCTTTGCTTGCAATTGTT+TGG - chr2_4:9250351-9250370 Msa0313800:intron 35.0%
TTGGACTTGAAACCTAATGT+TGG - chr2_4:9250474-9250493 Msa0313800:intron 35.0%
! TTTTCGTGATCTACTTCTCT+TGG + chr2_4:9250562-9250581 None:intergenic 35.0%
GAACTGAGAGAGATTGAAGA+TGG + chr2_4:9248176-9248195 None:intergenic 40.0%
CAATGGAGAACGAAATTTGG+AGG + chr2_4:9248198-9248217 None:intergenic 40.0%
AGAGGAAAGAGAAGAAGTGA+AGG + chr2_4:9248231-9248250 None:intergenic 40.0%
TTCCACTCTTCTACCATTTC+AGG - chr2_4:9248266-9248285 Msa0313800:three_prime_UTR 40.0%
TACCTGAAATGGTAGAAGAG+TGG + chr2_4:9248271-9248290 None:intergenic 40.0%
CAAACCCACTAACCTTATGT+TGG + chr2_4:9248418-9248437 None:intergenic 40.0%
AAATGGGGTTGTGTTGTAAG+TGG - chr2_4:9248753-9248772 Msa0313800:intron 40.0%
! TTTAGGGTGTGTTTGGATTG+AGG - chr2_4:9248828-9248847 Msa0313800:intron 40.0%
TTAGGGTGTGTTTGGATTGA+GGG - chr2_4:9248829-9248848 Msa0313800:intron 40.0%
TGTGTTTGGATTGAGGGTTT+AGG - chr2_4:9248835-9248854 Msa0313800:intron 40.0%
TTTGGATTGAGGGTTTAGGA+GGG - chr2_4:9248839-9248858 Msa0313800:intron 40.0%
!!! CAAGTTGGTCCCTTATGTTT+TGG + chr2_4:9249113-9249132 None:intergenic 40.0%
TTTGGATTGAGGGTTTAGGA+GGG + chr2_4:9248839-9248858 None:intergenic 40.0%
TGTGTTTGGATTGAGGGTTT+AGG + chr2_4:9248835-9248854 None:intergenic 40.0%
! AAATAACCCAAGGGTGTGTT+TGG + chr2_4:9249513-9249532 None:intergenic 40.0%
TCTCATCGCGACTTAAAGTA+AGG - chr2_4:9249921-9249940 Msa0313800:intron 40.0%
! GAAGTATTTCCATCTGACAC+AGG + chr2_4:9249990-9250009 None:intergenic 40.0%
!! TTTCCAACAAAGCACTGACA+CGG + chr2_4:9250274-9250293 None:intergenic 40.0%
! AAACTGATTTCTCCATGTCC+AGG - chr2_4:9250438-9250457 Msa0313800:intron 40.0%
TGTCTTCTAGGTCCAACATT+AGG + chr2_4:9250489-9250508 None:intergenic 40.0%
GTTGGACCTAGAAGACAAAA+TGG - chr2_4:9250492-9250511 Msa0313800:intron 40.0%
! AGACGACCATTTTGTCTTCT+AGG + chr2_4:9250501-9250520 None:intergenic 40.0%
TAGAAGACAAAATGGTCGTC+TGG - chr2_4:9250500-9250519 Msa0313800:intron 40.0%
TTGTTGTGCTCATTCGTTTG+CGG + chr2_4:9250608-9250627 None:intergenic 40.0%
AAACGAATGAGCACAACAAC+TGG - chr2_4:9250609-9250628 Msa0313800:intron 40.0%
ACTATTTGCCACTATTTGCG+TGG + chr2_4:9250692-9250711 None:intergenic 40.0%
! AGTGGGTGCTCTGAATTTCA+TGG + chr2_4:9248135-9248154 None:intergenic 45.0%
GTGAAGGAGCAATGAAGCAA+TGG + chr2_4:9248215-9248234 None:intergenic 45.0%
GAAAGAGAGAGAAGAAGGAG+AGG + chr2_4:9248249-9248268 None:intergenic 45.0%
GAGTGGAAAGAGAGAGAAGA+AGG + chr2_4:9248254-9248273 None:intergenic 45.0%
ACTTGACTATGGTGGCTGTT+TGG - chr2_4:9248658-9248677 Msa0313800:intron 45.0%
! ATGGTGGCTGTTTGGAATGA+AGG - chr2_4:9248666-9248685 Msa0313800:intron 45.0%
GTTTGGATTGAGGGTTTAGG+AGG - chr2_4:9248838-9248857 Msa0313800:intron 45.0%
TTGGATTGAGGGTTTAGGAG+GGG - chr2_4:9248840-9248859 Msa0313800:intron 45.0%
TTGGATTGAGGGTTTAGGAG+GGG + chr2_4:9248840-9248859 None:intergenic 45.0%
GTTTGGATTGAGGGTTTAGG+AGG + chr2_4:9248838-9248857 None:intergenic 45.0%
! CAAGGGTGTGTTTGGATTGA+GGG + chr2_4:9249505-9249524 None:intergenic 45.0%
CTCAATCCAAACACACCCTT+GGG - chr2_4:9249504-9249523 Msa0313800:intron 45.0%
TCGTCGCTCTACTTTCTCTA+AGG - chr2_4:9249702-9249721 Msa0313800:intron 45.0%
! TGCTGTTTACCTGTGTCAGA+TGG - chr2_4:9249978-9249997 Msa0313800:intron 45.0%
AAATCATTGGCACGCACTCA+TGG - chr2_4:9250579-9250598 Msa0313800:intron 45.0%
!!! ATAAAACATTTTTTTTTTTT+TGG + chr2_4:9248622-9248641 None:intergenic 5.0%
ATTGAGGGTTTAGGAGGGGA+AGG - chr2_4:9248844-9248863 Msa0313800:intron 50.0%
TTGAGGGTTTAGGAGGGGAA+GGG - chr2_4:9248845-9248864 Msa0313800:intron 50.0%
ATTGAGGGTTTAGGAGGGGA+GGG + chr2_4:9248844-9248863 None:intergenic 50.0%
! CCAAGGGTGTGTTTGGATTG+AGG + chr2_4:9249506-9249525 None:intergenic 50.0%
CCTCAATCCAAACACACCCT+TGG - chr2_4:9249503-9249522 Msa0313800:intron 50.0%
CGATGAGAGCAAGATGAGCA+TGG + chr2_4:9249909-9249928 None:intergenic 50.0%
TGTCCGTGTCAGTGCTTTGT+TGG - chr2_4:9250268-9250287 Msa0313800:intron 50.0%
TCCATGTCCAGGTTTGTCAC+TGG - chr2_4:9250449-9250468 Msa0313800:intron 50.0%
CCATGTCCAGGTTTGTCACT+GGG - chr2_4:9250450-9250469 Msa0313800:intron 50.0%
TCCAGGTTTGTCACTGGGAT+TGG - chr2_4:9250455-9250474 Msa0313800:intron 50.0%
TCCAATCCCAGTGACAAACC+TGG + chr2_4:9250459-9250478 None:intergenic 50.0%
CGTCTGGTTATAGTAGCAGC+AGG - chr2_4:9250516-9250535 Msa0313800:intron 50.0%
! GCAAAGGACTTTTCGTCCCT+TGG + chr2_4:9250661-9250680 None:intergenic 50.0%
ACCAAGAGCCACGCAAATAG+TGG - chr2_4:9250681-9250700 Msa0313800:intron 50.0%
GATTGAGGGTTTAGGAGGGG+AGG + chr2_4:9248843-9248862 None:intergenic 55.0%
CAACGGGTCAGTGTCGTGTA+TGG - chr2_4:9250239-9250258 Msa0313800:intron 55.0%
CCCAGTGACAAACCTGGACA+TGG + chr2_4:9250453-9250472 None:intergenic 55.0%
ATTAAAGCGACGACGCGCCA+AGG - chr2_4:9250641-9250660 Msa0313800:intron 55.0%
TTAAAGCGACGACGCGCCAA+GGG - chr2_4:9250642-9250661 Msa0313800:intron 55.0%
! TTGCGTGGCTCTTGGTGCAA+AGG + chr2_4:9250677-9250696 None:intergenic 55.0%
GCCACTATTTGCGTGGCTCT+TGG + chr2_4:9250685-9250704 None:intergenic 55.0%
AGGGTTTAGGAGGGGAAGGG+AGG - chr2_4:9248848-9248867 Msa0313800:intron 60.0%
GGGTTTAGGAGGGGAAGGGA+GGG - chr2_4:9248849-9248868 Msa0313800:intron 60.0%
GGTTTAGGAGGGGAAGGGAG+GGG - chr2_4:9248850-9248869 Msa0313800:intron 60.0%
TTAGGAGGGGAAGGGAGGGG+AGG - chr2_4:9248853-9248872 Msa0313800:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 9248040 9250973 9248040 ID=Msa0313800;Name=Msa0313800
chr2_4 mRNA 9248040 9250973 9248040 ID=Msa0313800-mRNA-1;Parent=Msa0313800;Name=Msa0313800-mRNA-1;_AED=0.00;_eAED=0.00;_QI=52|1|1|1|1|1|2|263|148
chr2_4 exon 9248040 9248553 9248040 ID=Msa0313800-mRNA-1:exon:3563;Parent=Msa0313800-mRNA-1
chr2_4 exon 9250726 9250973 9250726 ID=Msa0313800-mRNA-1:exon:3562;Parent=Msa0313800-mRNA-1
chr2_4 five_prime_UTR 9250922 9250973 9250922 ID=Msa0313800-mRNA-1:five_prime_utr;Parent=Msa0313800-mRNA-1
chr2_4 CDS 9250726 9250921 9250726 ID=Msa0313800-mRNA-1:cds;Parent=Msa0313800-mRNA-1
chr2_4 CDS 9248303 9248553 9248303 ID=Msa0313800-mRNA-1:cds;Parent=Msa0313800-mRNA-1
chr2_4 three_prime_UTR 9248040 9248302 9248040 ID=Msa0313800-mRNA-1:three_prime_utr;Parent=Msa0313800-mRNA-1
Gene Sequence

>Msa0313800

ATGGCTTCGTTATCATCTTCTTCTGTGTCTCCTTTGATATCCATGAAATTCAGAGCACCCACTTTCACTGCTTCTTCAAAACCATCTTCAATCTCTCTCAGTTCCTCCAAATTTCGTTCTCCATTGCTTCATTGCTCCTTCACTTCTTCTCTTTCCTCTCCTTCTTCTCTCTCTTTCCACTCTTCTACCATTTCAGGTTTGTCACTGGGATTGGACTTGAAACCTAATGTTGGACCTAGAAGACAAAATGGTCGTCTGGTTATAGTAGCAGCAGGCAGACAAGCTCTTTGTCTAACCAAGAGAAGTAGATCACGAAAATCATTGGCACGCACTCATGGCTTCCGCAAACGAATGAGCACAACAACTGGAAGAGCTGTATTAAAGCGACGACGCGCCAAGGGACGAAAAGTCCTTTGCACCAAGAGCCACGCAAATAGTGGCAAATAG

Protein sequence

>Msa0313800

MASLSSSSVSPLISMKFRAPTFTASSKPSSISLSSSKFRSPLLHCSFTSSLSSPSSLSFHSSTISGLSLGLDLKPNVGPRRQNGRLVIVAAGRQALCLTKRSRSRKSLARTHGFRKRMSTTTGRAVLKRRRAKGRKVLCTKSHANSGK*