AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0235180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0235180 MtrunA17_Chr2g0283631 95.238 147 4 1 1 147 1 144 1.69e-80 234
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0235180 AT1G29070.1 62.264 106 33 3 43 147 56 155 1.08e-30 108

Find 35 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAAATGCAGACAAGTTTA+AGG 0.163360 2_2:-8030157 None:intergenic
TTCCACTCTTCTACCATTTC+AGG 0.167216 2_2:+8027657 Msa0235180:CDS
TGTGACTATTTGCCACTATT+TGG 0.219141 2_2:-8030100 None:intergenic
AAGCAATGGAGAACGAAATT+TGG 0.248963 2_2:-8027589 None:intergenic
AAATGCAAGATTAGACTTGA+TGG 0.349270 2_2:+8030285 Msa0235180:three_prime_UTR
TCCAGGTTTGTCACTGGGAT+TGG 0.354922 2_2:+8029862 Msa0235180:intron
CCATGTCCAGGTTTGTCACT+GGG 0.366798 2_2:+8029857 Msa0235180:intron
TGTCTTCTAGGTCCAACATT+AGG 0.373666 2_2:-8029893 None:intergenic
GTGACTATTTGCCACTATTT+GGG 0.379406 2_2:-8030099 None:intergenic
GCCACTATTTGGGTGGCTCT+TGG 0.379573 2_2:-8030089 None:intergenic
TCCATGTCCAGGTTTGTCAC+TGG 0.393144 2_2:+8029856 Msa0235180:intron
GAGTGGAAAGAGAGAGAAGA+AGG 0.436096 2_2:-8027642 None:intergenic
AAACGAATGAGCACAACAAC+TGG 0.446755 2_2:+8030016 Msa0235180:CDS
GAACTGAGAGAGATTGAAGA+TGG 0.451682 2_2:-8027564 None:intergenic
GTTGGACCTAGAAGACAAAA+TGG 0.465141 2_2:+8029899 Msa0235180:CDS
AAAATTTATCGGTCAAAATA+CGG 0.469035 2_2:-8030363 None:intergenic
TTGGGTGGCTCTTGGTGCAA+AGG 0.484761 2_2:-8030081 None:intergenic
TAGAAGACAAAATGGTCGTC+TGG 0.490410 2_2:+8029907 Msa0235180:CDS
AGTGGGTGCTCTGAATTTCA+TGG 0.501238 2_2:-8027523 None:intergenic
ACCAAGAGCCACCCAAATAG+TGG 0.508798 2_2:+8030088 Msa0235180:CDS
GAAAGAGAGAGAAGAAGGAG+AGG 0.509500 2_2:-8027637 None:intergenic
AAGTAGATCACGAAAATCAT+TGG 0.511560 2_2:+8029973 Msa0235180:CDS
AGAGGAAAGAGAAGAAGTGA+AGG 0.513017 2_2:-8027619 None:intergenic
TTGTTGTGCTCATTCGTTTG+CGG 0.530347 2_2:-8030012 None:intergenic
GTGAAGGAGCAATGAAGCAA+TGG 0.546159 2_2:-8027603 None:intergenic
CAATGGAGAACGAAATTTGG+AGG 0.554985 2_2:-8027586 None:intergenic
CTGAATTTCATGGATATCAA+AGG 0.555430 2_2:-8027513 None:intergenic
CGTCTGGTTATAGTAGCAGC+AGG 0.557576 2_2:+8029923 Msa0235180:CDS
TTGGACTTGAAACCTAATGT+TGG 0.565813 2_2:+8029881 Msa0235180:CDS
ATTAAAGCGACGACGCGCCA+AGG 0.568139 2_2:+8030048 Msa0235180:CDS
ACTATTTGCCACTATTTGGG+TGG 0.569879 2_2:-8030096 None:intergenic
AAATCATTGGCACGCACACA+TGG 0.581876 2_2:+8029986 Msa0235180:CDS
TACCTGAAATGGTAGAAGAG+TGG 0.590029 2_2:-8027659 None:intergenic
TTAAAGCGACGACGCGCCAA+GGG 0.641870 2_2:+8030049 Msa0235180:CDS
TTTGAAGAAGCAGTGAAAGT+GGG 0.659697 2_2:-8027540 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACTTTTCTTTTTTAAATTA+CGG - chr2_2:8028826-8028845 None:intergenic 10.0%
!!! AGTAGAAAAATTATTTTAAT+TGG + chr2_2:8029029-8029048 Msa0235180:intron 10.0%
!! ATTTGAGAAAATAAAAAATT+TGG - chr2_2:8029616-8029635 None:intergenic 10.0%
!!! TTTAAAACTTGTATTATTTT+AGG + chr2_2:8030229-8030248 Msa0235180:three_prime_UTR 10.0%
!! AAAAAAACAAGAAATTAAGT+TGG - chr2_2:8027698-8027717 None:intergenic 15.0%
!!! TATAAAACATTTATTGACTA+TGG - chr2_2:8028017-8028036 None:intergenic 15.0%
!!! TATAAATGTTTTATTGACTA+TGG + chr2_2:8028035-8028054 Msa0235180:intron 15.0%
!!! ACATGTTTTATTTTTGTTAT+TGG + chr2_2:8028381-8028400 Msa0235180:intron 15.0%
!!! CACTTTTCATTTTTAAATTA+CGG + chr2_2:8028697-8028716 Msa0235180:intron 15.0%
!!! TTATTTTCTCAAATTATGAT+CGG + chr2_2:8029622-8029641 Msa0235180:intron 15.0%
!! ATATAGTTAAAAAAATTGTC+CGG + chr2_2:8029803-8029822 Msa0235180:intron 15.0%
!!! TACACAAATATAATACTTTT+AGG - chr2_2:8030130-8030149 None:intergenic 15.0%
!!! AATACAAGTTTTAAACATAA+AGG - chr2_2:8030224-8030243 None:intergenic 15.0%
!!! TTTTTTGTGTGATTGAAATT+TGG + chr2_2:8027719-8027738 Msa0235180:intron 20.0%
!! TTAAACATAATCTGATACTT+AGG - chr2_2:8028319-8028338 None:intergenic 20.0%
!! ACAAAAATAAAACATGTTTG+AGG - chr2_2:8028378-8028397 None:intergenic 20.0%
!!! TTATTTTTGTTATTGGTTGT+TGG + chr2_2:8028388-8028407 Msa0235180:intron 20.0%
!!! TTTCATTTTTGGATTTGAAA+TGG + chr2_2:8028507-8028526 Msa0235180:intron 20.0%
!!! TCATTTAGTTACATTCTTTT+AGG + chr2_2:8028629-8028648 Msa0235180:intron 20.0%
!!! CATTTAGTTACATTCTTTTA+GGG + chr2_2:8028630-8028649 Msa0235180:intron 20.0%
!! ACAATAAGAAAATAACCTAA+GGG - chr2_2:8028883-8028902 None:intergenic 20.0%
!! AACAATAAGAAAATAACCTA+AGG - chr2_2:8028884-8028903 None:intergenic 20.0%
!! AAAAAACATTTCAATCTTAG+AGG - chr2_2:8029473-8029492 None:intergenic 20.0%
!!! CTTTCTTCTTATTTTCATAA+TGG + chr2_2:8030187-8030206 Msa0235180:three_prime_UTR 20.0%
! AACTCAAAAAAAGAGGATAA+TGG + chr2_2:8027467-8027486 Msa0235180:exon 25.0%
!!! ATTAAGTTGGAAAAGGAAAA+AGG - chr2_2:8027685-8027704 None:intergenic 25.0%
!!! ACAAGAAATTAAGTTGGAAA+AGG - chr2_2:8027692-8027711 None:intergenic 25.0%
!! GTTTAAGCTTTAGTTAATAG+CGG + chr2_2:8027741-8027760 Msa0235180:intron 25.0%
!! ATAGCGGTTGAATTTTTAAT+TGG + chr2_2:8027757-8027776 Msa0235180:intron 25.0%
!! TTTTAAATCTAACCGACATA+AGG + chr2_2:8027798-8027817 Msa0235180:intron 25.0%
!!! AAATGTTTTATTGACTATGG+TGG + chr2_2:8028038-8028057 Msa0235180:intron 25.0%
! TGGAATGAAAGTTTCATATT+TGG + chr2_2:8028066-8028085 Msa0235180:intron 25.0%
! TTATGATTCTGCATTTGTAA+TGG + chr2_2:8028124-8028143 Msa0235180:intron 25.0%
! ATAAAATGTCTTGTGAATAG+CGG + chr2_2:8028171-8028190 Msa0235180:intron 25.0%
!! ATAGCGGTTGAATTTTTAAT+TGG + chr2_2:8027757-8027776 Msa0235180:intron 25.0%
!!! TTTTAATTCTAGCCAACATA+AGG + chr2_2:8028228-8028247 Msa0235180:intron 25.0%
!!! CAAACTAGTTCTATTCAATT+CGG - chr2_2:8028963-8028982 None:intergenic 25.0%
! AAAACTGAATTGAAACATAC+CGG - chr2_2:8028995-8029014 None:intergenic 25.0%
!!! ACATTATCATCATTGATTCT+AGG + chr2_2:8029144-8029163 Msa0235180:intron 25.0%
!!! ACATTATCATCATTGATTCT+AGG + chr2_2:8029144-8029163 Msa0235180:intron 25.0%
!!! ACATTATCATCATTGATTCT+AGG + chr2_2:8029144-8029163 Msa0235180:intron 25.0%
! TCATTGTCAAGTTATTTACA+TGG - chr2_2:8029511-8029530 None:intergenic 25.0%
!! TTGTAGTTCTTTTGCAATAA+TGG + chr2_2:8029735-8029754 Msa0235180:intron 25.0%
GTAGCAAAACTCAAAAAAAG+AGG + chr2_2:8027460-8027479 Msa0235180:five_prime_UTR 30.0%
CTGAATTTCATGGATATCAA+AGG - chr2_2:8027516-8027535 None:intergenic 30.0%
ACAGAAATTGAACATGTTTC+AGG - chr2_2:8027957-8027976 None:intergenic 30.0%
! TTGTTTGTTAGTTGTGCAAT+TGG + chr2_2:8027983-8028002 Msa0235180:intron 30.0%
! TCTGCATTTGTAATGGAAAA+TGG + chr2_2:8028131-8028150 Msa0235180:intron 30.0%
! CTGCATTTGTAATGGAAAAT+GGG + chr2_2:8028132-8028151 Msa0235180:intron 30.0%
! TGCATTTGTAATGGAAAATG+GGG + chr2_2:8028133-8028152 Msa0235180:intron 30.0%
! TTGTTGGTTAGTTATGCAAT+TGG + chr2_2:8028404-8028423 Msa0235180:intron 30.0%
AGTTTGATTGAACTTGACTA+TGG + chr2_2:8028465-8028484 Msa0235180:intron 30.0%
! TGGAATGAAGGTTTCATTTT+TGG + chr2_2:8028496-8028515 Msa0235180:intron 30.0%
TTATGCTTCTGCATTTGTAA+TGG + chr2_2:8028547-8028566 Msa0235180:intron 30.0%
! TCTGCATTTGTAATGGAAAA+TGG + chr2_2:8028131-8028150 Msa0235180:intron 30.0%
! CTGCATTTGTAATGGAAAAT+GGG + chr2_2:8028132-8028151 Msa0235180:intron 30.0%
! TGCATTTGTAATGGAAAATG+GGG + chr2_2:8028133-8028152 Msa0235180:intron 30.0%
TGTAACTAAATGAACAGCAT+AGG - chr2_2:8028622-8028641 None:intergenic 30.0%
! AACTAGTTTGAATGTAGTAC+CGG + chr2_2:8028973-8028992 Msa0235180:intron 30.0%
! TGTTGATATTGCTTTAGCTT+TGG + chr2_2:8029107-8029126 Msa0235180:intron 30.0%
!!! TAGGACGTTTATTTTTGTGT+TGG + chr2_2:8029163-8029182 Msa0235180:intron 30.0%
!!! TAGGACGTTTATTTTTGTGT+TGG + chr2_2:8029163-8029182 Msa0235180:intron 30.0%
!!! TAGGACGTTTATTTTTGTGT+TGG + chr2_2:8029163-8029182 Msa0235180:intron 30.0%
GACTTCAATGATCTTTACAA+AGG - chr2_2:8029430-8029449 None:intergenic 30.0%
! CATTTCAATCTTAGAGGTAT+TGG - chr2_2:8029467-8029486 None:intergenic 30.0%
!!! AAATGTTTTTTCAACTGCCA+AGG + chr2_2:8029482-8029501 Msa0235180:intron 30.0%
AGTTATTTACATGGAATCCT+TGG - chr2_2:8029502-8029521 None:intergenic 30.0%
! ACTTCATGTCAAAGTTTGTT+TGG + chr2_2:8029560-8029579 Msa0235180:intron 30.0%
ATGCTTTGCTTTCAATTGTT+TGG + chr2_2:8029758-8029777 Msa0235180:intron 30.0%
AAATCAAGTCAAGCTAAATC+CGG - chr2_2:8029825-8029844 None:intergenic 30.0%
AAGTAGATCACGAAAATCAT+TGG + chr2_2:8029973-8029992 Msa0235180:CDS 30.0%
TTGAAATGCAGACAAGTTTA+AGG - chr2_2:8030160-8030179 None:intergenic 30.0%
!!! TTTTTTTTTTTGCAGCACAC+TGG - chr2_2:8030268-8030287 None:intergenic 30.0%
AAATGCAAGATTAGACTTGA+TGG + chr2_2:8030285-8030304 Msa0235180:three_prime_UTR 30.0%
! TGAGTTTTGCTACGTGTTTT+CGG - chr2_2:8027453-8027472 None:intergenic 35.0%
TTTGAAGAAGCAGTGAAAGT+GGG - chr2_2:8027543-8027562 None:intergenic 35.0%
!! TTTTGAAGAAGCAGTGAAAG+TGG - chr2_2:8027544-8027563 None:intergenic 35.0%
AAGCAATGGAGAACGAAATT+TGG - chr2_2:8027592-8027611 None:intergenic 35.0%
!! AAGGAAAAAGGTACCTGAAA+TGG - chr2_2:8027673-8027692 None:intergenic 35.0%
TTGATTGAACTTGACTATGG+TGG + chr2_2:8028468-8028487 Msa0235180:intron 35.0%
!!! ACATTCTTTTAGGGTGTGTT+TGG + chr2_2:8028639-8028658 Msa0235180:intron 35.0%
! AAATAACCTAAGGGTGTGTT+TGG - chr2_2:8028874-8028893 None:intergenic 35.0%
!! TGATATTGCTTTAGCTTTGG+TGG + chr2_2:8029110-8029129 Msa0235180:intron 35.0%
!!! ACGTTTATTTTTGTGTTGGC+TGG + chr2_2:8029263-8029282 Msa0235180:intron 35.0%
GCGACTTAAAGTAAGGAATT+TGG + chr2_2:8029337-8029356 Msa0235180:intron 35.0%
AAGTGTCAGTACTGCAAAAA+TGG - chr2_2:8029544-8029563 None:intergenic 35.0%
!! CAAATTATGATCGGTGTCAA+CGG + chr2_2:8029631-8029650 Msa0235180:intron 35.0%
!! AAATTATGATCGGTGTCAAC+GGG + chr2_2:8029632-8029651 Msa0235180:intron 35.0%
! GCTTTGTTGGAAATTGTATG+CGG + chr2_2:8029690-8029709 Msa0235180:intron 35.0%
TTGGACTTGAAACCTAATGT+TGG + chr2_2:8029881-8029900 Msa0235180:CDS 35.0%
! TTTTCGTGATCTACTTCTCT+TGG - chr2_2:8029969-8029988 None:intergenic 35.0%
GTGACTATTTGCCACTATTT+GGG - chr2_2:8030102-8030121 None:intergenic 35.0%
TGTGACTATTTGCCACTATT+TGG - chr2_2:8030103-8030122 None:intergenic 35.0%
GAACTGAGAGAGATTGAAGA+TGG - chr2_2:8027567-8027586 None:intergenic 40.0%
CAATGGAGAACGAAATTTGG+AGG - chr2_2:8027589-8027608 None:intergenic 40.0%
AGAGGAAAGAGAAGAAGTGA+AGG - chr2_2:8027622-8027641 None:intergenic 40.0%
TTCCACTCTTCTACCATTTC+AGG + chr2_2:8027657-8027676 Msa0235180:CDS 40.0%
TACCTGAAATGGTAGAAGAG+TGG - chr2_2:8027662-8027681 None:intergenic 40.0%
TCTAACCGACATAAGGTGAA+TGG + chr2_2:8027805-8027824 Msa0235180:intron 40.0%
CTAACCGACATAAGGTGAAT+GGG + chr2_2:8027806-8027825 Msa0235180:intron 40.0%
CAAACCCATTCACCTTATGT+CGG - chr2_2:8027813-8027832 None:intergenic 40.0%
! TATTGACTATGGTGGCTGTT+TGG + chr2_2:8028046-8028065 Msa0235180:intron 40.0%
AAATGGGGTTGTGTTGTAAG+TGG + chr2_2:8028148-8028167 Msa0235180:intron 40.0%
TCTAGCCAACATAAGGTTAG+TGG + chr2_2:8028235-8028254 Msa0235180:intron 40.0%
CTAGCCAACATAAGGTTAGT+GGG + chr2_2:8028236-8028255 Msa0235180:intron 40.0%
CAAACCCACTAACCTTATGT+TGG - chr2_2:8028243-8028262 None:intergenic 40.0%
AAATGGGGTTGTGTTGTAAG+TGG + chr2_2:8028148-8028167 Msa0235180:intron 40.0%
! TTTAGGGTGTGTTTGGATTG+AGG + chr2_2:8028646-8028665 Msa0235180:intron 40.0%
TTAGGGTGTGTTTGGATTGA+GGG + chr2_2:8028647-8028666 Msa0235180:intron 40.0%
TGTGTTTGGATTGAGGGTTT+AGG + chr2_2:8028653-8028672 Msa0235180:intron 40.0%
TTTGGATTGAGGGTTTAGGA+GGG + chr2_2:8028657-8028676 Msa0235180:intron 40.0%
TTTGGATTGAGGGTTTAGGA+GGG - chr2_2:8028657-8028676 None:intergenic 40.0%
TGTGTTTGGATTGAGGGTTT+AGG - chr2_2:8028653-8028672 None:intergenic 40.0%
! TAAGGGTGTGTTTGGATTGA+GGG - chr2_2:8028866-8028885 None:intergenic 40.0%
TCTCATCGCGACTTAAAGTA+AGG + chr2_2:8029330-8029349 Msa0235180:intron 40.0%
! GAAGTATTTCCATCTGACAC+AGG - chr2_2:8029399-8029418 None:intergenic 40.0%
!! TTTCCAACAAAGCACTGACA+CGG - chr2_2:8029683-8029702 None:intergenic 40.0%
! AAACTGATTTCTCCATGTCC+AGG + chr2_2:8029845-8029864 Msa0235180:intron 40.0%
TGTCTTCTAGGTCCAACATT+AGG - chr2_2:8029896-8029915 None:intergenic 40.0%
GTTGGACCTAGAAGACAAAA+TGG + chr2_2:8029899-8029918 Msa0235180:CDS 40.0%
! AGACGACCATTTTGTCTTCT+AGG - chr2_2:8029908-8029927 None:intergenic 40.0%
TAGAAGACAAAATGGTCGTC+TGG + chr2_2:8029907-8029926 Msa0235180:CDS 40.0%
TTGTTGTGCTCATTCGTTTG+CGG - chr2_2:8030015-8030034 None:intergenic 40.0%
AAACGAATGAGCACAACAAC+TGG + chr2_2:8030016-8030035 Msa0235180:CDS 40.0%
ACTATTTGCCACTATTTGGG+TGG - chr2_2:8030099-8030118 None:intergenic 40.0%
! AGTGGGTGCTCTGAATTTCA+TGG - chr2_2:8027526-8027545 None:intergenic 45.0%
GTGAAGGAGCAATGAAGCAA+TGG - chr2_2:8027606-8027625 None:intergenic 45.0%
GAAAGAGAGAGAAGAAGGAG+AGG - chr2_2:8027640-8027659 None:intergenic 45.0%
GAGTGGAAAGAGAGAGAAGA+AGG - chr2_2:8027645-8027664 None:intergenic 45.0%
ACTTGACTATGGTGGCTGTT+TGG + chr2_2:8028476-8028495 Msa0235180:intron 45.0%
! ATGGTGGCTGTTTGGAATGA+AGG + chr2_2:8028054-8028073 Msa0235180:intron 45.0%
GTTTGGATTGAGGGTTTAGG+AGG + chr2_2:8028656-8028675 Msa0235180:intron 45.0%
TTGGATTGAGGGTTTAGGAG+GGG + chr2_2:8028658-8028677 Msa0235180:intron 45.0%
TTGGATTGAGGGTTTAGGAG+GGG - chr2_2:8028658-8028677 None:intergenic 45.0%
GTTTGGATTGAGGGTTTAGG+AGG - chr2_2:8028656-8028675 None:intergenic 45.0%
! CTAAGGGTGTGTTTGGATTG+AGG - chr2_2:8028867-8028886 None:intergenic 45.0%
CTCAATCCAAACACACCCTT+AGG + chr2_2:8028865-8028884 Msa0235180:intron 45.0%
TCGTCGCTCTACTTTCTCTA+AGG + chr2_2:8029063-8029082 Msa0235180:intron 45.0%
! TGCTGTTTACCTGTGTCAGA+TGG + chr2_2:8029387-8029406 Msa0235180:intron 45.0%
AAATCATTGGCACGCACACA+TGG + chr2_2:8029986-8030005 Msa0235180:CDS 45.0%
!!! AAAACATTTTTTTTTTTTTT+TGG - chr2_2:8028438-8028457 None:intergenic 5.0%
ATTGAGGGTTTAGGAGGGGA+AGG + chr2_2:8028662-8028681 Msa0235180:intron 50.0%
TTGAGGGTTTAGGAGGGGAA+GGG + chr2_2:8028663-8028682 Msa0235180:intron 50.0%
ATTGAGGGTTTAGGAGGGGA+GGG - chr2_2:8028662-8028681 None:intergenic 50.0%
CGATGAGAGCAAGATGAGCA+TGG - chr2_2:8029318-8029337 None:intergenic 50.0%
TGTCCGTGTCAGTGCTTTGT+TGG + chr2_2:8029677-8029696 Msa0235180:intron 50.0%
TCCATGTCCAGGTTTGTCAC+TGG + chr2_2:8029856-8029875 Msa0235180:intron 50.0%
CCATGTCCAGGTTTGTCACT+GGG + chr2_2:8029857-8029876 Msa0235180:intron 50.0%
TCCAGGTTTGTCACTGGGAT+TGG + chr2_2:8029862-8029881 Msa0235180:intron 50.0%
TCCAATCCCAGTGACAAACC+TGG - chr2_2:8029866-8029885 None:intergenic 50.0%
CGTCTGGTTATAGTAGCAGC+AGG + chr2_2:8029923-8029942 Msa0235180:CDS 50.0%
! GCAAAGGACTTTTCGTCCCT+TGG - chr2_2:8030068-8030087 None:intergenic 50.0%
ACCAAGAGCCACCCAAATAG+TGG + chr2_2:8030088-8030107 Msa0235180:CDS 50.0%
GATTGAGGGTTTAGGAGGGG+AGG - chr2_2:8028661-8028680 None:intergenic 55.0%
CAACGGGTCAGTGTCGTGTA+TGG + chr2_2:8029648-8029667 Msa0235180:intron 55.0%
CCCAGTGACAAACCTGGACA+TGG - chr2_2:8029860-8029879 None:intergenic 55.0%
ATTAAAGCGACGACGCGCCA+AGG + chr2_2:8030048-8030067 Msa0235180:CDS 55.0%
TTAAAGCGACGACGCGCCAA+GGG + chr2_2:8030049-8030068 Msa0235180:CDS 55.0%
! TTGGGTGGCTCTTGGTGCAA+AGG - chr2_2:8030084-8030103 None:intergenic 55.0%
GCCACTATTTGGGTGGCTCT+TGG - chr2_2:8030092-8030111 None:intergenic 55.0%
AGGGTTTAGGAGGGGAAGGG+AGG + chr2_2:8028666-8028685 Msa0235180:intron 60.0%
GGGTTTAGGAGGGGAAGGGA+GGG + chr2_2:8028667-8028686 Msa0235180:intron 60.0%
GGTTTAGGAGGGGAAGGGAG+GGG + chr2_2:8028668-8028687 Msa0235180:intron 60.0%
TTAGGAGGGGAAGGGAGGGG+AGG + chr2_2:8028671-8028690 Msa0235180:intron 65.0%
TAGGAGGGGAAGGGAGGGGA+GGG + chr2_2:8028672-8028691 Msa0235180:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 8027434 8030377 8027434 ID=Msa0235180;Name=Msa0235180
chr2_2 mRNA 8027434 8030377 8027434 ID=Msa0235180-mRNA-1;Parent=Msa0235180;Name=Msa0235180-mRNA-1;_AED=0.01;_eAED=0.01;_QI=52|1|1|1|1|1|2|260|147
chr2_2 exon 8027434 8027678 8027434 ID=Msa0235180-mRNA-1:exon:3461;Parent=Msa0235180-mRNA-1
chr2_2 exon 8029867 8030377 8029867 ID=Msa0235180-mRNA-1:exon:3462;Parent=Msa0235180-mRNA-1
chr2_2 five_prime_UTR 8027434 8027485 8027434 ID=Msa0235180-mRNA-1:five_prime_utr;Parent=Msa0235180-mRNA-1
chr2_2 CDS 8027486 8027678 8027486 ID=Msa0235180-mRNA-1:cds;Parent=Msa0235180-mRNA-1
chr2_2 CDS 8029867 8030117 8029867 ID=Msa0235180-mRNA-1:cds;Parent=Msa0235180-mRNA-1
chr2_2 three_prime_UTR 8030118 8030377 8030118 ID=Msa0235180-mRNA-1:three_prime_utr;Parent=Msa0235180-mRNA-1
Gene Sequence

>Msa0235180

ATGGCTTCGTTATCATCTTCTGTGTCTCCTTTGATATCCATGAAATTCAGAGCACCCACTTTCACTGCTTCTTCAAAACCATCTTCAATCTCTCTCAGTTCCTCCAAATTTCGTTCTCCATTGCTTCATTGCTCCTTCACTTCTTCTCTTTCCTCTCCTTCTTCTCTCTCTTTCCACTCTTCTACCATTTCAGGTTTGTCACTGGGATTGGACTTGAAACCTAATGTTGGACCTAGAAGACAAAATGGTCGTCTGGTTATAGTAGCAGCAGGCAGACAAGCTCTTTGTCTAACCAAGAGAAGTAGATCACGAAAATCATTGGCACGCACACATGGCTTCCGCAAACGAATGAGCACAACAACTGGAAGAGCTGTATTAAAGCGACGACGCGCCAAGGGACGAAAAGTCCTTTGCACCAAGAGCCACCCAAATAGTGGCAAATAG

Protein sequence

>Msa0235180

MASLSSSVSPLISMKFRAPTFTASSKPSSISLSSSKFRSPLLHCSFTSSLSSPSSLSFHSSTISGLSLGLDLKPNVGPRRQNGRLVIVAAGRQALCLTKRSRSRKSLARTHGFRKRMSTTTGRAVLKRRRAKGRKVLCTKSHPNSGK*