AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0632970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0632970 MtrunA17_Chr4g0011001 98.294 293 5 0 1 293 1 293 0.0 600
Msa0632970 MtrunA17_Chr7g0276121 51.667 300 138 3 11 303 7 306 2.12e-90 271
Msa0632970 MtrunA17_Chr4g0009911 32.083 240 141 5 54 282 45 273 6.15e-34 125
Msa0632970 MtrunA17_Chr1g0199411 30.682 264 153 5 28 279 12 257 1.11e-27 108
Msa0632970 MtrunA17_Chr1g0201631 27.365 296 189 9 24 301 30 317 1.38e-27 110
Msa0632970 MtrunA17_Chr6g0464751 29.893 281 153 12 49 303 58 320 3.74e-25 104
Msa0632970 MtrunA17_Chr3g0131931 31.188 202 114 6 85 268 103 297 1.66e-22 96.7
Msa0632970 MtrunA17_Chr6g0462021 29.537 281 156 11 13 270 37 298 1.68e-22 97.1
Msa0632970 MtrunA17_Chr7g0251761 29.044 272 165 9 13 268 37 296 3.97e-18 84.3
Msa0632970 MtrunA17_Chr7g0255161 27.083 240 125 10 64 267 15 240 9.84e-17 79.7
Msa0632970 MtrunA17_Chr7g0255151 27.670 206 112 7 85 267 111 302 2.57e-16 79.0
Msa0632970 MtrunA17_Chr7g0273371 25.670 261 143 8 25 258 79 315 1.49e-15 76.6
Msa0632970 MtrunA17_Chr1g0163561 31.351 185 96 6 3 185 56 211 2.50e-15 75.5
Msa0632970 MtrunA17_Chr4g0037991 29.515 227 120 10 20 233 88 287 8.31e-15 73.9
Msa0632970 MtrunA17_Chr4g0049351 29.018 224 130 9 85 292 325 535 1.89e-14 73.6
Msa0632970 MtrunA17_Chr4g0064931 27.000 300 174 13 21 293 281 562 2.13e-14 73.6
Msa0632970 MtrunA17_Chr1g0211241 26.214 309 167 13 15 300 363 633 6.00e-14 72.4
Msa0632970 MtrunA17_Chr1g0211231 26.603 312 160 15 6 304 288 543 2.81e-12 67.0
Msa0632970 MtrunA17_Chr1g0193941 27.389 157 100 4 45 198 84 229 5.15e-12 66.2
Msa0632970 MtrunA17_Chr5g0406311 29.947 187 110 7 120 300 163 334 5.13e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0632970 AT3G60800.1 84.039 307 47 1 1 305 1 307 0.0 521
Msa0632970 AT4G22750.1 66.000 300 97 3 8 305 1 297 9.99e-131 374
Msa0632970 AT4G00840.1 54.730 296 124 4 11 303 2 290 1.33e-104 307
Msa0632970 AT4G00840.2 55.769 208 82 4 11 215 2 202 1.32e-62 197
Msa0632970 AT5G04270.1 32.624 282 149 8 18 283 2 258 1.23e-32 122
Msa0632970 AT3G09320.1 34.307 274 150 11 20 279 4 261 2.95e-32 121
Msa0632970 AT3G26935.1 28.470 281 170 9 24 288 44 309 3.24e-25 105
Msa0632970 AT4G24630.1 28.464 267 167 8 24 273 29 288 8.15e-25 103
Msa0632970 AT5G41060.2 27.007 274 166 10 13 268 21 278 5.34e-23 98.2
Msa0632970 AT5G41060.1 27.007 274 166 10 13 268 36 293 7.03e-23 98.2
Msa0632970 AT5G41060.3 28.384 229 134 8 57 268 11 226 3.57e-22 95.1
Msa0632970 AT5G41060.4 28.384 229 134 8 57 268 11 226 3.57e-22 95.1
Msa0632970 AT5G50020.3 27.341 267 169 8 24 273 29 287 2.46e-21 93.6
Msa0632970 AT5G50020.2 26.667 270 167 9 24 273 59 317 3.14e-21 93.6
Msa0632970 AT5G05070.1 28.070 228 122 8 85 288 118 327 6.58e-18 84.0
Msa0632970 AT3G56920.1 27.542 236 123 10 66 268 64 284 5.84e-17 80.5
Msa0632970 AT3G04970.1 27.059 255 135 9 25 255 79 306 5.93e-17 80.9
Msa0632970 AT3G48760.1 27.317 205 124 6 85 271 110 307 1.59e-16 80.1
Msa0632970 AT5G50020.1 26.217 267 165 9 24 273 29 280 1.98e-16 79.7
Msa0632970 AT3G04970.3 27.642 246 127 9 34 255 1 219 4.16e-16 77.8
Msa0632970 AT2G40990.1 32.278 158 83 6 123 268 158 303 5.07e-16 78.2
Msa0632970 AT3G04970.2 27.016 248 130 8 25 245 79 302 1.31e-15 76.3
Msa0632970 AT5G20350.1 25.649 308 185 13 21 304 276 563 1.42e-15 77.4
Msa0632970 AT3G56930.1 26.601 203 126 5 85 268 94 292 1.83e-15 77.0
Msa0632970 AT3G18620.1 54.386 57 26 0 126 182 149 205 3.50e-15 75.5
Msa0632970 AT2G14255.1 31.343 201 115 8 72 260 314 503 3.81e-15 76.3
Msa0632970 AT4G01730.1 27.513 189 118 4 67 242 105 287 1.02e-12 68.9
Msa0632970 AT3G51390.1 32.143 140 89 3 127 266 164 297 8.86e-11 62.4
Msa0632970 AT3G51390.2 32.143 140 89 3 127 266 159 292 8.99e-11 62.4

Find 115 sgRNAs with CRISPR-Local

Find 333 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTAGGGTTTATTGAGAATT+TGG 0.109054 4_3:+17464293 None:intergenic
ATCCGGCTTGTAAGTAATTC+TGG 0.174428 4_3:-17458792 Msa0632970:three_prime_UTR
CCAAGATCATAACGCCATTT+TGG 0.205394 4_3:+17460597 None:intergenic
CTAGGGTTTATTGAGAATTT+GGG 0.240991 4_3:+17464294 None:intergenic
GGAACAAATCTAACATTATA+AGG 0.245071 4_3:+17458628 None:intergenic
CAGTTTGGAGGTACACTTCC+AGG 0.285240 4_3:+17462125 None:intergenic
TTAAACCAAATATGCCCTTA+TGG 0.302319 4_3:+17459103 None:intergenic
TGATTCTCTTATTGCTGTCT+TGG 0.311178 4_3:-17463941 Msa0632970:CDS
TTTGATCTTGTTTCATGCTT+TGG 0.318169 4_3:-17463917 Msa0632970:intron
TATGTTCCTTCTTTGTATAA+TGG 0.318990 4_3:-17463970 Msa0632970:CDS
CCTCTCTCCTCATCAATTGT+AGG 0.323601 4_3:+17462098 None:intergenic
CCAAAATGGCGTTATGATCT+TGG 0.333453 4_3:-17460597 Msa0632970:CDS
GTCATGGGTTTGGTGAATCT+AGG 0.337349 4_3:+17464276 None:intergenic
TACCGGATCCGTTGATTAGA+TGG 0.344373 4_3:+17462026 None:intergenic
ATACAAAGAAGGAACATAAT+TGG 0.344556 4_3:+17463975 None:intergenic
ATTGAGATCGAAGTGGGTTT+TGG 0.345179 4_3:-17464143 Msa0632970:five_prime_UTR
GGAAGAGAATTGCAATGCTT+TGG 0.353783 4_3:+17458606 None:intergenic
GCAAGAGAGCTAGGTGTTCC+AGG 0.359082 4_3:+17461433 None:intergenic
TCTGATTATGCACATATCAT+TGG 0.372598 4_3:-17461278 Msa0632970:CDS
TGTGGGTAGTTAACTGTGTT+GGG 0.376839 4_3:-17461821 Msa0632970:CDS
AGAAGAAAACTACTCCAAAA+TGG 0.382057 4_3:-17460611 Msa0632970:CDS
TTGTTGGTTCTTGGTGTTGT+TGG 0.390832 4_3:-17464024 Msa0632970:CDS
GAAGAGAATTGCAATGCTTT+GGG 0.393702 4_3:+17458607 None:intergenic
TGTATGAGTGAGAAAGTAAA+GGG 0.400983 4_3:+17458816 None:intergenic
GGAGAGGAAGATCCATTAGT+TGG 0.403198 4_3:-17462077 Msa0632970:CDS
CTTTCTCACTCATACAAATC+CGG 0.412453 4_3:-17458809 Msa0632970:three_prime_UTR
GGCATCGAGGCGGCTTGAGC+TGG 0.413050 4_3:+17461988 None:intergenic
AGCTCCGAGGTTGTTCTTGT+CGG 0.414652 4_3:-17464236 Msa0632970:five_prime_UTR
TGATTGATTATGCATAGATC+TGG 0.415700 4_3:-17464114 Msa0632970:exon
TCATGGGTTTGGTGAATCTA+GGG 0.417197 4_3:+17464277 None:intergenic
CGCTTTCGCATTGAGTGTGA+TGG 0.421207 4_3:-17461305 Msa0632970:CDS
AATTGATGATTCTGCTTTGT+GGG 0.422280 4_3:-17464200 Msa0632970:five_prime_UTR
TCAATTGTAGGCCTCCAGTT+TGG 0.424125 4_3:+17462110 None:intergenic
ACCTGAAACAGAGTGAAAAC+CGG 0.429843 4_3:+17459032 None:intergenic
TTCATTGACTAACAACTCAT+TGG 0.431744 4_3:+17458484 None:intergenic
CTGGAAGTGTACCTCCAAAC+TGG 0.434261 4_3:-17462124 Msa0632970:CDS
ATGATGTGTACACTTCTGTT+TGG 0.440503 4_3:+17458866 None:intergenic
TTCCTTCTTTGTATAATGGA+GGG 0.446114 4_3:-17463966 Msa0632970:CDS
CTGAACTCTAACCCAACTAA+TGG 0.447036 4_3:+17462065 None:intergenic
GTGCATGTGTTAAGTTGAAA+TGG 0.449179 4_3:-17458710 Msa0632970:three_prime_UTR
GTGTGGGTAGTTAACTGTGT+TGG 0.451518 4_3:-17461822 Msa0632970:CDS
GTTCCTTCTTTGTATAATGG+AGG 0.453444 4_3:-17463967 Msa0632970:CDS
TCCGGCTTGTAAGTAATTCT+GGG 0.456621 4_3:-17458791 Msa0632970:three_prime_UTR
AAATTGATGATTCTGCTTTG+TGG 0.456748 4_3:-17464201 Msa0632970:five_prime_UTR
TTCATAGCATTCTTTAGTGA+TGG 0.458599 4_3:-17461463 Msa0632970:CDS
GGAAAACTTTACCTCAATAG+TGG 0.459164 4_3:+17461240 None:intergenic
AGCTATTGGGAATCGAAGTC+GGG 0.460014 4_3:+17459132 None:intergenic
TTGGGACGGACAAGAAATAC+TGG 0.473728 4_3:-17459227 Msa0632970:CDS
CAGCTATTGGGAATCGAAGT+CGG 0.479426 4_3:+17459131 None:intergenic
CCTGAAACAGAGTGAAAACC+GGG 0.485054 4_3:+17459033 None:intergenic
GTGTTAGGTTATGGTTTGAG+AGG 0.490604 4_3:-17458666 Msa0632970:three_prime_UTR
GAGAGGAAGATCCATTAGTT+GGG 0.491844 4_3:-17462076 Msa0632970:CDS
AAATGGAGGGAGCAATGAGA+GGG 0.494826 4_3:-17458693 Msa0632970:three_prime_UTR
TGTACACATCATGTAACAAA+AGG 0.494958 4_3:-17458855 Msa0632970:three_prime_UTR
AAAGTTGTAGCAAGAGAGCT+AGG 0.504375 4_3:+17461424 None:intergenic
TTGTATGAGTGAGAAAGTAA+AGG 0.504793 4_3:+17458815 None:intergenic
TACTCGAGACCTTGTAGAGC+TGG 0.507547 4_3:+17459165 None:intergenic
TGCACAGCTTTACGAGGACT+TGG 0.507888 4_3:-17464060 Msa0632970:CDS
CGAAGGATGCCAGCTCTACA+AGG 0.508944 4_3:-17459174 Msa0632970:CDS
ATCCATCTAATCAACGGATC+CGG 0.513865 4_3:-17462028 Msa0632970:CDS
GTTTGTGCAGATGAATTGCT+TGG 0.517980 4_3:+17458766 None:intergenic
GCTTTCGCATTGAGTGTGAT+GGG 0.523751 4_3:-17461304 Msa0632970:CDS
ATATCTTCTTCTGAATAAGC+AGG 0.525822 4_3:+17459198 None:intergenic
AACCCTCCATTATACAAAGA+AGG 0.526029 4_3:+17463964 None:intergenic
GAAATGGAGGGAGCAATGAG+AGG 0.526481 4_3:-17458694 Msa0632970:three_prime_UTR
ACTCACAAACTGAACAATGA+TGG 0.526589 4_3:+17461967 None:intergenic
TTTAGTGATGGAGAAATCCC+TGG 0.528395 4_3:-17461451 Msa0632970:CDS
CTTTGCATTGAGATCGAAGT+GGG 0.532329 4_3:-17464149 Msa0632970:five_prime_UTR
ATTGTAGGCCTCCAGTTTGG+AGG 0.536225 4_3:+17462113 None:intergenic
TTTATTTGCAAAACTGTCCC+CGG 0.537247 4_3:-17459051 Msa0632970:three_prime_UTR
GCAGTAACGATGCAGTCACT+AGG 0.540451 4_3:+17461491 None:intergenic
TGGGCGATGTGTGCTGAAGA+TGG 0.549501 4_3:-17461856 Msa0632970:CDS
GCCCAGAATTACTTACAAGC+CGG 0.551718 4_3:+17458790 None:intergenic
TGCAGTTGGTTATGCTATTG+TGG 0.552325 4_3:-17462175 Msa0632970:intron
ATCAACGGATCCGGTATTGT+AGG 0.557479 4_3:-17462019 Msa0632970:CDS
GGTTGCACTTCCTACAATAC+CGG 0.558949 4_3:+17462009 None:intergenic
ATGGAGGGAGCAATGAGAGG+GGG 0.560870 4_3:-17458691 Msa0632970:three_prime_UTR
AATTGAATAGAAGAAAATGA+AGG 0.563143 4_3:+17458585 None:intergenic
TGCTAATACAACCACTATTG+AGG 0.565179 4_3:-17461251 Msa0632970:intron
AACAGGAGACAGAATTAACA+TGG 0.565999 4_3:-17458956 Msa0632970:three_prime_UTR
GTGTTCATACCAAGAAAAGA+AGG 0.566591 4_3:+17461778 None:intergenic
AATGGAGGGAGCAATGAGAG+GGG 0.568316 4_3:-17458692 Msa0632970:three_prime_UTR
CAAGAGAGCTAGGTGTTCCA+GGG 0.573246 4_3:+17461434 None:intergenic
GATCTGGAGCTACGATGGCA+TGG 0.585026 4_3:-17464098 Msa0632970:CDS
CAGTCACTAGGGACGTCTCA+AGG 0.590525 4_3:+17461503 None:intergenic
TAGGGTTTATTGAGAATTTG+GGG 0.592322 4_3:+17464295 None:intergenic
GCATAGATCTGGAGCTACGA+TGG 0.600274 4_3:-17464103 Msa0632970:CDS
GGCGTTATGATCTTGGTCGT+CGG 0.603365 4_3:-17460590 Msa0632970:CDS
AGTGGAGAAGAAGATTGAAG+TGG 0.604930 4_3:+17464332 None:intergenic
AAGTTCTGCACAGCTTTACG+AGG 0.607927 4_3:-17464066 Msa0632970:CDS
ATTCAGAAGAAGATATTCGA+AGG 0.610112 4_3:-17459191 Msa0632970:CDS
CATGTGTTAAGTTGAAATGG+AGG 0.616401 4_3:-17458707 Msa0632970:three_prime_UTR
CAGTAACGATGCAGTCACTA+GGG 0.618039 4_3:+17461492 None:intergenic
AATTGATGAGGAGAGAGGAG+AGG 0.619514 4_3:-17462093 Msa0632970:CDS
AACACCGACAAGAACAACCT+CGG 0.620932 4_3:+17464232 None:intergenic
AGTTTGGAGGTACACTTCCA+GGG 0.622562 4_3:+17462126 None:intergenic
CTAAAGAATGCTATGAAATG+CGG 0.626695 4_3:+17461469 None:intergenic
CCTACAATTGATGAGGAGAG+AGG 0.629217 4_3:-17462098 Msa0632970:CDS
GTGGGTAGTTAACTGTGTTG+GGG 0.629727 4_3:-17461820 Msa0632970:CDS
ATTGATGATTCTGCTTTGTG+GGG 0.631990 4_3:-17464199 Msa0632970:five_prime_UTR
CTGGAGGCCTACAATTGATG+AGG 0.643127 4_3:-17462105 Msa0632970:CDS
ACAGGAGACAGAATTAACAT+GGG 0.644781 4_3:-17458955 Msa0632970:three_prime_UTR
AGAGTGATCCATCTAATCAA+CGG 0.644934 4_3:-17462034 Msa0632970:CDS
TCACACTCAATGCGAAAGCG+AGG 0.648642 4_3:+17461308 None:intergenic
AGATGGACCACCATTGTGTG+TGG 0.658837 4_3:-17461839 Msa0632970:CDS
AGTTAACTACCCACACACAA+TGG 0.666889 4_3:+17461829 None:intergenic
GAAGTGTACCTCCAAACTGG+AGG 0.685237 4_3:-17462121 Msa0632970:CDS
GAACAATGATGGCATCGAGG+CGG 0.692188 4_3:+17461978 None:intergenic
TAACTACCCACACACAATGG+TGG 0.692891 4_3:+17461832 None:intergenic
ATGTGTTAAGTTGAAATGGA+GGG 0.701506 4_3:-17458706 Msa0632970:three_prime_UTR
CAGGAGACAGAATTAACATG+GGG 0.710211 4_3:-17458954 Msa0632970:three_prime_UTR
GATGGACCACCATTGTGTGT+GGG 0.716633 4_3:-17461838 Msa0632970:CDS
ACTTTGCATTGAGATCGAAG+TGG 0.716971 4_3:-17464150 Msa0632970:five_prime_UTR
ACTGAACAATGATGGCATCG+AGG 0.726860 4_3:+17461975 None:intergenic
CTGAAACAGAGTGAAAACCG+GGG 0.785419 4_3:+17459034 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTTCTTGTTTTATTTA+TGG - chr4_3:17461314-17461333 Msa0632970:CDS 10.0%
!!! TGAATTTTGTTTGAAATTAA+TGG - chr4_3:17459222-17459241 Msa0632970:CDS 15.0%
!!! TAACCAAGTATTTTTTTTAT+TGG + chr4_3:17461342-17461361 None:intergenic 15.0%
!! CATGAAAAATATTTGATAAA+TGG - chr4_3:17462440-17462459 Msa0632970:intron 15.0%
!!! ATAATTTCATTCAGATTTTT+AGG - chr4_3:17463276-17463295 Msa0632970:intron 15.0%
!!! CATATTGATTTTTGATATAT+GGG - chr4_3:17463382-17463401 Msa0632970:intron 15.0%
!! TATAACATATAAGAATATAC+AGG + chr4_3:17463517-17463536 None:intergenic 15.0%
!!! TTAAATGTTTTTGAAATAGT+TGG - chr4_3:17463589-17463608 Msa0632970:intron 15.0%
!! ATCATAAAAAAAATCATACT+AGG + chr4_3:17464162-17464181 None:intergenic 15.0%
!!! AGAAAATATTTTACAAATAC+TGG + chr4_3:17464364-17464383 None:intergenic 15.0%
!!! ATTTGAATTTGTTAGTGTTT+TGG - chr4_3:17459035-17459054 Msa0632970:three_prime_UTR 20.0%
!!! ATTGGAAGTTTTTATTAGTT+GGG - chr4_3:17459262-17459281 Msa0632970:intron 20.0%
!! ATAATTAGCGTAAAATAATG+AGG - chr4_3:17459630-17459649 Msa0632970:intron 20.0%
!! AAAAGAACAATTAGTTATCA+CGG - chr4_3:17459755-17459774 Msa0632970:intron 20.0%
!! AGAAAAAGCTAAAATGAAAT+GGG + chr4_3:17459917-17459936 None:intergenic 20.0%
!! AAGAAAAAGCTAAAATGAAA+TGG + chr4_3:17459918-17459937 None:intergenic 20.0%
!!! AACTTGATTTTATTCCTTTT+CGG - chr4_3:17461012-17461031 Msa0632970:intron 20.0%
!! CATTCATAAAAGTAATAACT+GGG + chr4_3:17461175-17461194 None:intergenic 20.0%
!! TCATTCATAAAAGTAATAAC+TGG + chr4_3:17461176-17461195 None:intergenic 20.0%
!! TACAAAAAAGTTCATTTGTA+TGG + chr4_3:17461687-17461706 None:intergenic 20.0%
!!! ATGAACTTTTTTGTATTACT+TGG - chr4_3:17461692-17461711 Msa0632970:intron 20.0%
!!! TGAACTTTTTTGTATTACTT+GGG - chr4_3:17461693-17461712 Msa0632970:intron 20.0%
!! AACAATTTAAACTCAACTTA+GGG + chr4_3:17462074-17462093 None:intergenic 20.0%
!!! TCAAATATTTTTCATGAAGT+TGG + chr4_3:17462436-17462455 None:intergenic 20.0%
!!! GCATATTGATTTTTGATATA+TGG - chr4_3:17463381-17463400 Msa0632970:intron 20.0%
!!! ACTTTATATATCTAGGATAT+GGG + chr4_3:17463540-17463559 None:intergenic 20.0%
!!! TACTTTATATATCTAGGATA+TGG + chr4_3:17463541-17463560 None:intergenic 20.0%
!! TGTTTGTACTTTATATATCT+AGG + chr4_3:17463547-17463566 None:intergenic 20.0%
!! CAACATAAATCATTATGTAA+GGG + chr4_3:17463637-17463656 None:intergenic 20.0%
!!! TTTTTTATGATGTTACTTAG+AGG - chr4_3:17464171-17464190 Msa0632970:five_prime_UTR 20.0%
!! AATTGAATAGAAGAAAATGA+AGG + chr4_3:17464321-17464340 None:intergenic 20.0%
!!! AATTTGGGGATTTTGATTTT+TGG + chr4_3:17458597-17458616 None:intergenic 25.0%
!!! AATTTTTTTGATTGGGTCAT+GGG + chr4_3:17458645-17458664 None:intergenic 25.0%
!!! GAGCTAGAATTTTTTTGATT+GGG + chr4_3:17458652-17458671 None:intergenic 25.0%
!!! ATTATGATTTTGTTGGTTCT+TGG - chr4_3:17458870-17458889 Msa0632970:three_prime_UTR 25.0%
! ATACAAAGAAGGAACATAAT+TGG + chr4_3:17458931-17458950 None:intergenic 25.0%
! TATGTTCCTTCTTTGTATAA+TGG - chr4_3:17458933-17458952 Msa0632970:three_prime_UTR 25.0%
!!! ATCTGTTTTTGATTTGTTTG+AGG - chr4_3:17459075-17459094 Msa0632970:three_prime_UTR 25.0%
! ATTTATAGGGTCTATTTGAT+GGG - chr4_3:17459162-17459181 Msa0632970:CDS 25.0%
! CAACTAATAAAAACTTCCAA+TGG + chr4_3:17459263-17459282 None:intergenic 25.0%
!! CATTGGAAGTTTTTATTAGT+TGG - chr4_3:17459261-17459280 Msa0632970:intron 25.0%
!! TGATCTTGGTAACAAAATAA+TGG - chr4_3:17459859-17459878 Msa0632970:intron 25.0%
!!! TCTTTAAAGTTTTCATTAGC+TGG - chr4_3:17459888-17459907 Msa0632970:intron 25.0%
!!! CTTTAAAGTTTTCATTAGCT+GGG - chr4_3:17459889-17459908 Msa0632970:intron 25.0%
!! ATGTAGAATAATGAAGTGTT+GGG - chr4_3:17459954-17459973 Msa0632970:intron 25.0%
!!! TGAGACTAATTGTCATTTTT+CGG + chr4_3:17460002-17460021 None:intergenic 25.0%
!! AAAAATGACAATTAGTCTCA+AGG - chr4_3:17460002-17460021 Msa0632970:intron 25.0%
! AGGTGTTAAATATCTAATTG+AGG - chr4_3:17460066-17460085 Msa0632970:intron 25.0%
!!! AAAGACTGTTTTTTAAACCT+TGG - chr4_3:17460457-17460476 Msa0632970:intron 25.0%
! AAATGTGACACTACAAAAAA+CGG + chr4_3:17460982-17461001 None:intergenic 25.0%
! CGTTATAGTAATACTGATAT+TGG + chr4_3:17461285-17461304 None:intergenic 25.0%
! GTGCCAATAAAAAAAATACT+TGG - chr4_3:17461336-17461355 Msa0632970:intron 25.0%
! CAACAATTTAAACTCAACTT+AGG + chr4_3:17462075-17462094 None:intergenic 25.0%
! TACATGTTCTCTAATATGTT+TGG - chr4_3:17462398-17462417 Msa0632970:intron 25.0%
! ACATGTTCTCTAATATGTTT+GGG - chr4_3:17462399-17462418 Msa0632970:intron 25.0%
! TGTAACAAACTTTCATTCAA+TGG + chr4_3:17462729-17462748 None:intergenic 25.0%
!!! AGTTTGTTACAAAATCTTAG+AGG - chr4_3:17462738-17462757 Msa0632970:intron 25.0%
!! AACTGTTATGAATTCAGTTT+TGG - chr4_3:17462813-17462832 Msa0632970:intron 25.0%
! ATCTACAAATTATGACATCT+TGG + chr4_3:17462932-17462951 None:intergenic 25.0%
! ATTAGCTACTTGGATTATTT+AGG + chr4_3:17462962-17462981 None:intergenic 25.0%
!!! TCATCATGCAATTTTATTTG+TGG - chr4_3:17463152-17463171 Msa0632970:intron 25.0%
!!! TTTTATTTGTGGAAAGACAA+TGG - chr4_3:17463163-17463182 Msa0632970:intron 25.0%
! AACTAAAAACTAGTTCATGT+AGG + chr4_3:17463197-17463216 None:intergenic 25.0%
!! AACCATATTTTATGTTTCCA+TGG - chr4_3:17463414-17463433 Msa0632970:intron 25.0%
! TTCCATGGAAACATAAAATA+TGG + chr4_3:17463419-17463438 None:intergenic 25.0%
!!! AAATATTCCTACTTTTTCCA+TGG + chr4_3:17463434-17463453 None:intergenic 25.0%
! GCAACATAAATCATTATGTA+AGG + chr4_3:17463638-17463657 None:intergenic 25.0%
!! TTCTTTGATATCAGGTTTTT+GGG - chr4_3:17463658-17463677 Msa0632970:intron 25.0%
!! GTGTACAAATCTTTAAAAAC+AGG - chr4_3:17463930-17463949 Msa0632970:CDS 25.0%
! GGAACAAATCTAACATTATA+AGG + chr4_3:17464278-17464297 None:intergenic 25.0%
TAGGGTTTATTGAGAATTTG+GGG + chr4_3:17458611-17458630 None:intergenic 30.0%
CTAGGGTTTATTGAGAATTT+GGG + chr4_3:17458612-17458631 None:intergenic 30.0%
! TCTAGGGTTTATTGAGAATT+TGG + chr4_3:17458613-17458632 None:intergenic 30.0%
!!! GAATTTTTTTGATTGGGTCA+TGG + chr4_3:17458646-17458665 None:intergenic 30.0%
!!! GGAGCTAGAATTTTTTTGAT+TGG + chr4_3:17458653-17458672 None:intergenic 30.0%
! AAATTGATGATTCTGCTTTG+TGG - chr4_3:17458702-17458721 Msa0632970:three_prime_UTR 30.0%
! AATTGATGATTCTGCTTTGT+GGG - chr4_3:17458703-17458722 Msa0632970:three_prime_UTR 30.0%
TGATTGATTATGCATAGATC+TGG - chr4_3:17458789-17458808 Msa0632970:three_prime_UTR 30.0%
! TGGTTCGATTATGATTTTGT+TGG - chr4_3:17458863-17458882 Msa0632970:three_prime_UTR 30.0%
! TTCCTTCTTTGTATAATGGA+GGG - chr4_3:17458937-17458956 Msa0632970:three_prime_UTR 30.0%
! TTTGATCTTGTTTCATGCTT+TGG - chr4_3:17458986-17459005 Msa0632970:three_prime_UTR 30.0%
!! TGATTTGTTTGAGGATGTTT+AGG - chr4_3:17459084-17459103 Msa0632970:three_prime_UTR 30.0%
!! AGAATTTAGCTTGTTGACTT+AGG - chr4_3:17459129-17459148 Msa0632970:exon 30.0%
!! GAATTTAGCTTGTTGACTTA+GGG - chr4_3:17459130-17459149 Msa0632970:exon 30.0%
TAGGGATCATGATGATTTAT+AGG - chr4_3:17459148-17459167 Msa0632970:CDS 30.0%
AGGGATCATGATGATTTATA+GGG - chr4_3:17459149-17459168 Msa0632970:CDS 30.0%
GATTTATAGGGTCTATTTGA+TGG - chr4_3:17459161-17459180 Msa0632970:CDS 30.0%
GAGAATAATGATTGTTCCAT+TGG - chr4_3:17459244-17459263 Msa0632970:intron 30.0%
CAGCAAAAGCTAAAATCAAA+TGG + chr4_3:17459291-17459310 None:intergenic 30.0%
!!! TTGATTTTAGCTTTTGCTGT+CGG - chr4_3:17459292-17459311 Msa0632970:intron 30.0%
TCTTGGAAGTTATCATTAGT+TGG - chr4_3:17459558-17459577 Msa0632970:intron 30.0%
CTTGGAAGTTATCATTAGTT+GGG - chr4_3:17459559-17459578 Msa0632970:intron 30.0%
GTGTTAGATATCTACATTGA+TGG - chr4_3:17459652-17459671 Msa0632970:intron 30.0%
TTAGATATCTACATTGATGG+TGG - chr4_3:17459655-17459674 Msa0632970:intron 30.0%
GATGTAGAATAATGAAGTGT+TGG - chr4_3:17459953-17459972 Msa0632970:intron 30.0%
TGATGTTTATTCGAAAAACG+AGG - chr4_3:17460046-17460065 Msa0632970:intron 30.0%
AAAAGAACAAGTATCTCTGA+CGG - chr4_3:17460101-17460120 Msa0632970:intron 30.0%
AATGCAACTTTAAACCTTGA+CGG + chr4_3:17460233-17460252 None:intergenic 30.0%
!!! ACAGACTGTTTTTTAAACCT+TGG - chr4_3:17460499-17460518 Msa0632970:intron 30.0%
!!! GATTTTTAAAACAACTGCCA+AGG + chr4_3:17460519-17460538 None:intergenic 30.0%
!!! GTTTTAAAAATCCGAGTTAC+TGG - chr4_3:17460527-17460546 Msa0632970:intron 30.0%
AAACTTCAGAAGAAACACTT+AGG + chr4_3:17460578-17460597 None:intergenic 30.0%
TTAATGATGCGTTGTTTATC+TGG - chr4_3:17460659-17460678 Msa0632970:intron 30.0%
! CAAGTATTTCCTTCTTTTCT+TGG - chr4_3:17461116-17461135 Msa0632970:intron 30.0%
!! TAATTATTTCTGACTTGCGA+TGG - chr4_3:17461201-17461220 Msa0632970:intron 30.0%
! TCGTTTTACTTTAATGTCTC+AGG + chr4_3:17461249-17461268 None:intergenic 30.0%
!! GTAATACTGATATTGGTTCT+TGG + chr4_3:17461278-17461297 None:intergenic 30.0%
CTAAAGAATGCTATGAAATG+CGG + chr4_3:17461437-17461456 None:intergenic 30.0%
TTCATAGCATTCTTTAGTGA+TGG - chr4_3:17461440-17461459 Msa0632970:CDS 30.0%
GATGGAATACAAATCTAGAA+TGG + chr4_3:17461533-17461552 None:intergenic 30.0%
TTGTTACATAAACTCACAGA+TGG + chr4_3:17461551-17461570 None:intergenic 30.0%
GTGAGTTTATGTAACAATGT+TGG - chr4_3:17461554-17461573 Msa0632970:intron 30.0%
TCTGATTATGCACATATCAT+TGG - chr4_3:17461625-17461644 Msa0632970:intron 30.0%
ACTTATATGATAAGCACTTG+TGG + chr4_3:17461832-17461851 None:intergenic 30.0%
! ATATGCTTTTCCATGTTGTA+TGG - chr4_3:17462206-17462225 Msa0632970:intron 30.0%
AGAAGAAAACTACTCCAAAA+TGG - chr4_3:17462292-17462311 Msa0632970:intron 30.0%
CATGTTCTCTAATATGTTTG+GGG - chr4_3:17462400-17462419 Msa0632970:intron 30.0%
CTAGATTGTTGACACATAAT+GGG + chr4_3:17462487-17462506 None:intergenic 30.0%
AGTAACTTAAGTATGCATTG+TGG - chr4_3:17462553-17462572 Msa0632970:intron 30.0%
GTAACTTAAGTATGCATTGT+GGG - chr4_3:17462554-17462573 Msa0632970:intron 30.0%
GAAATCTAATAAAAAGCAGC+AGG + chr4_3:17462628-17462647 None:intergenic 30.0%
GGAAGAGAACTAGATATTAT+TGG - chr4_3:17463359-17463378 Msa0632970:intron 30.0%
TATGTTTCCATGGAAAAAGT+AGG - chr4_3:17463424-17463443 Msa0632970:intron 30.0%
! TATGTTGCTTCTTTGATATC+AGG - chr4_3:17463650-17463669 Msa0632970:intron 30.0%
! CTTCTTTGATATCAGGTTTT+TGG - chr4_3:17463657-17463676 Msa0632970:intron 30.0%
ATATCTTCTTCTGAATAAGC+AGG + chr4_3:17463708-17463727 None:intergenic 30.0%
ATTCAGAAGAAGATATTCGA+AGG - chr4_3:17463712-17463731 Msa0632970:intron 30.0%
!! CTTATGGTTTTTCAGCTATT+GGG + chr4_3:17463787-17463806 None:intergenic 30.0%
CAATAGCTGAAAAACCATAA+GGG - chr4_3:17463786-17463805 Msa0632970:intron 30.0%
! AAAAACCATAAGGGCATATT+TGG - chr4_3:17463795-17463814 Msa0632970:intron 30.0%
TTAAACCAAATATGCCCTTA+TGG + chr4_3:17463803-17463822 None:intergenic 30.0%
TGTACACATCATGTAACAAA+AGG - chr4_3:17464048-17464067 Msa0632970:CDS 30.0%
TGTATGAGTGAGAAAGTAAA+GGG + chr4_3:17464090-17464109 None:intergenic 30.0%
TTGTATGAGTGAGAAAGTAA+AGG + chr4_3:17464091-17464110 None:intergenic 30.0%
!! ATGTGTTAAGTTGAAATGGA+GGG - chr4_3:17464197-17464216 Msa0632970:five_prime_UTR 30.0%
! TTCATTGACTAACAACTCAT+TGG + chr4_3:17464422-17464441 None:intergenic 30.0%
!! TCAAAAAAATTCTAGCTCCG+AGG - chr4_3:17458654-17458673 Msa0632970:three_prime_UTR 35.0%
! ATTGATGATTCTGCTTTGTG+GGG - chr4_3:17458704-17458723 Msa0632970:three_prime_UTR 35.0%
GTTCCTTCTTTGTATAATGG+AGG - chr4_3:17458936-17458955 Msa0632970:three_prime_UTR 35.0%
AACCCTCCATTATACAAAGA+AGG + chr4_3:17458942-17458961 None:intergenic 35.0%
TGATTCTCTTATTGCTGTCT+TGG - chr4_3:17458962-17458981 Msa0632970:three_prime_UTR 35.0%
AAAGTGAGAAGTAGTTGACA+AGG - chr4_3:17459372-17459391 Msa0632970:intron 35.0%
AAAAACGACAAGTAGTTGTC+AGG - chr4_3:17459436-17459455 Msa0632970:intron 35.0%
AAAACGACAAGTAGTTGTCA+GGG - chr4_3:17459437-17459456 Msa0632970:intron 35.0%
! CTCGATCTTGGTAACAATAA+TGG - chr4_3:17459529-17459548 Msa0632970:intron 35.0%
AACAATAATGGTTGCTCTCT+TGG - chr4_3:17459541-17459560 Msa0632970:intron 35.0%
! TTTTTGCCAGATTGTGAATG+CGG - chr4_3:17459601-17459620 Msa0632970:intron 35.0%
! AAAAGTGCGAAGTAGTTGTT+AGG - chr4_3:17459685-17459704 Msa0632970:intron 35.0%
AAAGTGCGAAGTAGTTGTTA+GGG - chr4_3:17459686-17459705 Msa0632970:intron 35.0%
AAAATGACAAGTAGTCGTCA+AGG - chr4_3:17460297-17460316 Msa0632970:intron 35.0%
ACATAAAAAACCGTGACATC+TGG - chr4_3:17460420-17460439 Msa0632970:intron 35.0%
TAGTGATTAAACAACGACCA+AGG + chr4_3:17460477-17460496 None:intergenic 35.0%
AGAAACATCTTCCAGTAACT+CGG + chr4_3:17460541-17460560 None:intergenic 35.0%
TTTCCTCTTTATCATGCAGT+TGG - chr4_3:17460714-17460733 Msa0632970:intron 35.0%
TAACCAACTGCATGATAAAG+AGG + chr4_3:17460720-17460739 None:intergenic 35.0%
TCCAGGGTCAATAAAAACTA+CGG + chr4_3:17460764-17460783 None:intergenic 35.0%
AGAGTGATCCATCTAATCAA+CGG - chr4_3:17460869-17460888 Msa0632970:intron 35.0%
ACTCACAAACTGAACAATGA+TGG + chr4_3:17460939-17460958 None:intergenic 35.0%
!! TTCCTTTTCGGTTTGATATC+AGG - chr4_3:17461024-17461043 Msa0632970:intron 35.0%
!! TTTTCGGTTTGATATCAGGT+GGG - chr4_3:17461028-17461047 Msa0632970:intron 35.0%
GTGTTCATACCAAGAAAAGA+AGG + chr4_3:17461128-17461147 None:intergenic 35.0%
ACTTTAATGTCTCAGGAAGT+CGG + chr4_3:17461242-17461261 None:intergenic 35.0%
! GCTACAACTTTTCTTGCTTT+TGG - chr4_3:17461491-17461510 Msa0632970:CDS 35.0%
!! CAACTTTTCTTGCTTTTGGT+AGG - chr4_3:17461495-17461514 Msa0632970:CDS 35.0%
TGCTAATACAACCACTATTG+AGG - chr4_3:17461652-17461671 Msa0632970:intron 35.0%
GGAAAACTTTACCTCAATAG+TGG + chr4_3:17461666-17461685 None:intergenic 35.0%
TGAAAGTTGGATAAGGTGTA+GGG + chr4_3:17461729-17461748 None:intergenic 35.0%
CTAAATACTGCCATTCAACA+AGG + chr4_3:17461772-17461791 None:intergenic 35.0%
CTTGTTGAATGGCAGTATTT+AGG - chr4_3:17461770-17461789 Msa0632970:intron 35.0%
TGTACGTTGTTTATGCAAAC+AGG + chr4_3:17461797-17461816 None:intergenic 35.0%
TAAGCTATCTAAGAGAGCTT+AGG + chr4_3:17461927-17461946 None:intergenic 35.0%
AAGCTCTCTTAGATAGCTTA+TGG - chr4_3:17461927-17461946 Msa0632970:intron 35.0%
AGGATACATTTCACTAGTTC+AGG + chr4_3:17462112-17462131 None:intergenic 35.0%
AAGCAAAAGTCCATACAACA+TGG + chr4_3:17462219-17462238 None:intergenic 35.0%
! TCGTCGGAAAAATTTTGAAC+AGG - chr4_3:17462329-17462348 Msa0632970:intron 35.0%
CCTAGATTGTTGACACATAA+TGG + chr4_3:17462488-17462507 None:intergenic 35.0%
CCATTATGTGTCAACAATCT+AGG - chr4_3:17462485-17462504 Msa0632970:intron 35.0%
AATCTAGGCACTAATGACTA+AGG - chr4_3:17462500-17462519 Msa0632970:intron 35.0%
AATAAAAAGCAGCAGGACAA+GGG + chr4_3:17462621-17462640 None:intergenic 35.0%
TAATAAAAAGCAGCAGGACA+AGG + chr4_3:17462622-17462641 None:intergenic 35.0%
ATAGCAATCCTAAGCTAACT+AGG - chr4_3:17462774-17462793 Msa0632970:intron 35.0%
!!! TTCAGTTTTGGACAGTTACA+AGG - chr4_3:17462825-17462844 Msa0632970:intron 35.0%
TTCAGCAAGTATTAGCTACT+TGG + chr4_3:17462972-17462991 None:intergenic 35.0%
GAAATGTCCAGTGTATGTTA+AGG - chr4_3:17462989-17463008 Msa0632970:intron 35.0%
GAAACTTCCTTAACATACAC+TGG + chr4_3:17462999-17463018 None:intergenic 35.0%
! CATGATGATGTATTAGACAC+TGG + chr4_3:17463140-17463159 None:intergenic 35.0%
TACAGCACAAGTTTACACAT+GGG + chr4_3:17463248-17463267 None:intergenic 35.0%
ATACAGCACAAGTTTACACA+TGG + chr4_3:17463249-17463268 None:intergenic 35.0%
!! TTGATATCAGGTTTTTGGGA+CGG - chr4_3:17463662-17463681 Msa0632970:intron 35.0%
!! CCTTATGGTTTTTCAGCTAT+TGG + chr4_3:17463788-17463807 None:intergenic 35.0%
CCAATAGCTGAAAAACCATA+AGG - chr4_3:17463785-17463804 Msa0632970:intron 35.0%
TTTATTTGCAAAACTGTCCC+CGG - chr4_3:17463852-17463871 Msa0632970:intron 35.0%
AACAGGAGACAGAATTAACA+TGG - chr4_3:17463947-17463966 Msa0632970:CDS 35.0%
ACAGGAGACAGAATTAACAT+GGG - chr4_3:17463948-17463967 Msa0632970:CDS 35.0%
ATGATGTGTACACTTCTGTT+TGG + chr4_3:17464040-17464059 None:intergenic 35.0%
CTTTCTCACTCATACAAATC+CGG - chr4_3:17464094-17464113 Msa0632970:CDS 35.0%
!! GTGCATGTGTTAAGTTGAAA+TGG - chr4_3:17464193-17464212 Msa0632970:five_prime_UTR 35.0%
!! CATGTGTTAAGTTGAAATGG+AGG - chr4_3:17464196-17464215 Msa0632970:five_prime_UTR 35.0%
GAAGAGAATTGCAATGCTTT+GGG + chr4_3:17464299-17464318 None:intergenic 35.0%
AGTGGAGAAGAAGATTGAAG+TGG + chr4_3:17458574-17458593 None:intergenic 40.0%
!!! GGGGATTTTGATTTTTGGAG+TGG + chr4_3:17458592-17458611 None:intergenic 40.0%
!! TCATGGGTTTGGTGAATCTA+GGG + chr4_3:17458629-17458648 None:intergenic 40.0%
!! TTTTGATTGGGTCATGGGTT+TGG + chr4_3:17458640-17458659 None:intergenic 40.0%
ACTTTGCATTGAGATCGAAG+TGG - chr4_3:17458753-17458772 Msa0632970:three_prime_UTR 40.0%
CTTTGCATTGAGATCGAAGT+GGG - chr4_3:17458754-17458773 Msa0632970:three_prime_UTR 40.0%
!! ATTGAGATCGAAGTGGGTTT+TGG - chr4_3:17458760-17458779 Msa0632970:three_prime_UTR 40.0%
!! TTGTTGGTTCTTGGTGTTGT+TGG - chr4_3:17458879-17458898 Msa0632970:three_prime_UTR 40.0%
TGGGTTTGAGTGTGATACTA+TGG - chr4_3:17459181-17459200 Msa0632970:CDS 40.0%
!! TTAGCTTTTGCTGTCGGATT+TGG - chr4_3:17459298-17459317 Msa0632970:intron 40.0%
! TTCCACAAAATCAAGCATCG+TGG + chr4_3:17459810-17459829 None:intergenic 40.0%
! GGATGATTTTGTCGTGATCT+TGG - chr4_3:17459845-17459864 Msa0632970:intron 40.0%
TTGGGCATCTTAATTGACGA+TGG - chr4_3:17459972-17459991 Msa0632970:intron 40.0%
AAAATGACAAGTAGCCGTCA+AGG - chr4_3:17460216-17460235 Msa0632970:intron 40.0%
AACATCTGTATGAGCTTGTG+TGG + chr4_3:17460603-17460622 None:intergenic 40.0%
TGCAGTTGGTTATGCTATTG+TGG - chr4_3:17460728-17460747 Msa0632970:intron 40.0%
! TCCGTAGTTTTTATTGACCC+TGG - chr4_3:17460760-17460779 Msa0632970:intron 40.0%
GAGAGGAAGATCCATTAGTT+GGG - chr4_3:17460827-17460846 Msa0632970:intron 40.0%
CTGAACTCTAACCCAACTAA+TGG + chr4_3:17460841-17460860 None:intergenic 40.0%
ATCCATCTAATCAACGGATC+CGG - chr4_3:17460875-17460894 Msa0632970:intron 40.0%
CACCTGATATCAAACCGAAA+AGG + chr4_3:17461029-17461048 None:intergenic 40.0%
!! CTTTTCGGTTTGATATCAGG+TGG - chr4_3:17461027-17461046 Msa0632970:intron 40.0%
AGTTAACTACCCACACACAA+TGG + chr4_3:17461077-17461096 None:intergenic 40.0%
TGTGGGTAGTTAACTGTGTT+GGG - chr4_3:17461082-17461101 Msa0632970:intron 40.0%
! TTTAGTGATGGAGAAATCCC+TGG - chr4_3:17461452-17461471 Msa0632970:CDS 40.0%
AAAGTTGTAGCAAGAGAGCT+AGG + chr4_3:17461482-17461501 None:intergenic 40.0%
GAAAGTTGGATAAGGTGTAG+GGG + chr4_3:17461728-17461747 None:intergenic 40.0%
GTGAAAGTTGGATAAGGTGT+AGG + chr4_3:17461730-17461749 None:intergenic 40.0%
CTTCAGGTGAAAGTTGGATA+AGG + chr4_3:17461736-17461755 None:intergenic 40.0%
CAGTTTCTTCAGGTGAAAGT+TGG + chr4_3:17461742-17461761 None:intergenic 40.0%
AGGAGCAAAACAGTTTCTTC+AGG + chr4_3:17461752-17461771 None:intergenic 40.0%
! CTGTTTTGCTCCTTGTTGAA+TGG - chr4_3:17461759-17461778 Msa0632970:intron 40.0%
AACTCAACTTAGGGACTGTT+TGG + chr4_3:17462065-17462084 None:intergenic 40.0%
AAATGTATCCTCTGTCACTG+AGG - chr4_3:17462121-17462140 Msa0632970:CDS 40.0%
! GGACTTTTGCTTATGTGAAG+TGG - chr4_3:17462227-17462246 Msa0632970:intron 40.0%
GTGAAGTGGATACTGATCAA+TGG - chr4_3:17462241-17462260 Msa0632970:intron 40.0%
! CCAAGATCATAACGCCATTT+TGG + chr4_3:17462309-17462328 None:intergenic 40.0%
CCAAAATGGCGTTATGATCT+TGG - chr4_3:17462306-17462325 Msa0632970:intron 40.0%
GCACTAATGACTAAGGAAAC+TGG - chr4_3:17462507-17462526 Msa0632970:intron 40.0%
GCATTGTGGGAAACAAAACT+TGG - chr4_3:17462567-17462586 Msa0632970:intron 40.0%
! TGACAGAACCTAGTTAGCTT+AGG + chr4_3:17462785-17462804 None:intergenic 40.0%
! TTGTGTCACTGTCAACATCT+CGG + chr4_3:17463065-17463084 None:intergenic 40.0%
TGACACAGACACATGTCATT+CGG + chr4_3:17463108-17463127 None:intergenic 40.0%
ACAGCACAAGTTTACACATG+GGG + chr4_3:17463247-17463266 None:intergenic 40.0%
TGACTCGATGTCTCTATGTT+AGG - chr4_3:17463338-17463357 Msa0632970:intron 40.0%
ACCTGAAACAGAGTGAAAAC+CGG + chr4_3:17463874-17463893 None:intergenic 40.0%
CAGGAGACAGAATTAACATG+GGG - chr4_3:17463949-17463968 Msa0632970:CDS 40.0%
! ATCCGGCTTGTAAGTAATTC+TGG - chr4_3:17464111-17464130 Msa0632970:exon 40.0%
! TCCGGCTTGTAAGTAATTCT+GGG - chr4_3:17464112-17464131 Msa0632970:exon 40.0%
GTTTGTGCAGATGAATTGCT+TGG + chr4_3:17464140-17464159 None:intergenic 40.0%
GTGTTAGGTTATGGTTTGAG+AGG - chr4_3:17464237-17464256 Msa0632970:five_prime_UTR 40.0%
GGAAGAGAATTGCAATGCTT+TGG + chr4_3:17464300-17464319 None:intergenic 40.0%
!! GTCATGGGTTTGGTGAATCT+AGG + chr4_3:17458630-17458649 None:intergenic 45.0%
AACACCGACAAGAACAACCT+CGG + chr4_3:17458674-17458693 None:intergenic 45.0%
AAGTTCTGCACAGCTTTACG+AGG - chr4_3:17458837-17458856 Msa0632970:three_prime_UTR 45.0%
! TTGCTGTCGGATTTGGAATG+CGG - chr4_3:17459305-17459324 Msa0632970:intron 45.0%
GAATGCGGCGTAGAAATAAG+AGG - chr4_3:17459320-17459339 Msa0632970:intron 45.0%
CGGCGTAGAAATAAGAGGTT+AGG - chr4_3:17459325-17459344 Msa0632970:intron 45.0%
TGTCACGATGCTTGACTTTG+TGG - chr4_3:17459477-17459496 Msa0632970:intron 45.0%
GTGGAAATTGCGATCAAGCA+CGG - chr4_3:17459496-17459515 Msa0632970:intron 45.0%
! GGATGACGTTTTCTCGATCT+TGG - chr4_3:17459517-17459536 Msa0632970:intron 45.0%
TTTACGCCGCATTCACAATC+TGG + chr4_3:17459610-17459629 None:intergenic 45.0%
! TGCCACGATGCTTGATTTTG+TGG - chr4_3:17459805-17459824 Msa0632970:intron 45.0%
! CATTTGTGCGCGATGCTTTT+TGG - chr4_3:17460192-17460211 Msa0632970:intron 45.0%
GCAGAAGTTGCGATCAAACA+TGG - chr4_3:17460366-17460385 Msa0632970:intron 45.0%
GTGATTGTGTCCAGATGTCA+CGG + chr4_3:17460433-17460452 None:intergenic 45.0%
! AGTTTGGAGGTACACTTCCA+GGG + chr4_3:17460780-17460799 None:intergenic 45.0%
TCAATTGTAGGCCTCCAGTT+TGG + chr4_3:17460796-17460815 None:intergenic 45.0%
CCTCTCTCCTCATCAATTGT+AGG + chr4_3:17460808-17460827 None:intergenic 45.0%
CCTACAATTGATGAGGAGAG+AGG - chr4_3:17460805-17460824 Msa0632970:intron 45.0%
AATTGATGAGGAGAGAGGAG+AGG - chr4_3:17460810-17460829 Msa0632970:intron 45.0%
GGAGAGGAAGATCCATTAGT+TGG - chr4_3:17460826-17460845 Msa0632970:intron 45.0%
! TACCGGATCCGTTGATTAGA+TGG + chr4_3:17460880-17460899 None:intergenic 45.0%
ATCAACGGATCCGGTATTGT+AGG - chr4_3:17460884-17460903 Msa0632970:intron 45.0%
GGTTGCACTTCCTACAATAC+CGG + chr4_3:17460897-17460916 None:intergenic 45.0%
ACTGAACAATGATGGCATCG+AGG + chr4_3:17460931-17460950 None:intergenic 45.0%
TAACTACCCACACACAATGG+TGG + chr4_3:17461074-17461093 None:intergenic 45.0%
GTGTGGGTAGTTAACTGTGT+TGG - chr4_3:17461081-17461100 Msa0632970:intron 45.0%
GTGGGTAGTTAACTGTGTTG+GGG - chr4_3:17461083-17461102 Msa0632970:intron 45.0%
CAGTAACGATGCAGTCACTA+GGG + chr4_3:17461414-17461433 None:intergenic 45.0%
AAAGCGAGGTTCAAAACTGC+AGG + chr4_3:17461584-17461603 None:intergenic 45.0%
GCTTTCGCATTGAGTGTGAT+GGG - chr4_3:17461599-17461618 Msa0632970:intron 45.0%
CAACTTAGGGACTGTTTGGA+TGG + chr4_3:17462061-17462080 None:intergenic 45.0%
AGCATTTACCTCAGTGACAG+AGG + chr4_3:17462132-17462151 None:intergenic 45.0%
! GTTTGCTCTTTGTTGTGAGC+AGG - chr4_3:17462263-17462282 Msa0632970:intron 45.0%
ACATGTGTCTGTGTCAGCTT+AGG - chr4_3:17463112-17463131 Msa0632970:intron 45.0%
TTTACACATGGGGGAAACGA+GGG + chr4_3:17463237-17463256 None:intergenic 45.0%
CAGCACAAGTTTACACATGG+GGG + chr4_3:17463246-17463265 None:intergenic 45.0%
TCACATCTGCAGAAAGAGTC+TGG + chr4_3:17463302-17463321 None:intergenic 45.0%
TTGGGACGGACAAGAAATAC+TGG - chr4_3:17463676-17463695 Msa0632970:intron 45.0%
!! GAATCGAAGTCGGGTTTTGA+TGG + chr4_3:17463765-17463784 None:intergenic 45.0%
AGCTATTGGGAATCGAAGTC+GGG + chr4_3:17463774-17463793 None:intergenic 45.0%
CAGCTATTGGGAATCGAAGT+CGG + chr4_3:17463775-17463794 None:intergenic 45.0%
CTGAAACAGAGTGAAAACCG+GGG + chr4_3:17463872-17463891 None:intergenic 45.0%
CCTGAAACAGAGTGAAAACC+GGG + chr4_3:17463873-17463892 None:intergenic 45.0%
GCCCAGAATTACTTACAAGC+CGG + chr4_3:17464116-17464135 None:intergenic 45.0%
AAATGGAGGGAGCAATGAGA+GGG - chr4_3:17464210-17464229 Msa0632970:five_prime_UTR 45.0%
AGCTCCGAGGTTGTTCTTGT+CGG - chr4_3:17458667-17458686 Msa0632970:three_prime_UTR 50.0%
! GCATAGATCTGGAGCTACGA+TGG - chr4_3:17458800-17458819 Msa0632970:three_prime_UTR 50.0%
TGCACAGCTTTACGAGGACT+TGG - chr4_3:17458843-17458862 Msa0632970:three_prime_UTR 50.0%
TTGTCAGGGTAGTTGTGTCG+CGG - chr4_3:17459451-17459470 Msa0632970:intron 50.0%
GTGGAAGTTGCGATCAAGCA+TGG - chr4_3:17459824-17459843 Msa0632970:intron 50.0%
TGGATGATGCAGTCACGATG+CGG - chr4_3:17460386-17460405 Msa0632970:intron 50.0%
! CAGTTTGGAGGTACACTTCC+AGG + chr4_3:17460781-17460800 None:intergenic 50.0%
! CTGGAAGTGTACCTCCAAAC+TGG - chr4_3:17460779-17460798 Msa0632970:intron 50.0%
GAAGTGTACCTCCAAACTGG+AGG - chr4_3:17460782-17460801 Msa0632970:intron 50.0%
ATTGTAGGCCTCCAGTTTGG+AGG + chr4_3:17460793-17460812 None:intergenic 50.0%
CTGGAGGCCTACAATTGATG+AGG - chr4_3:17460798-17460817 Msa0632970:intron 50.0%
! GAACAATGATGGCATCGAGG+CGG + chr4_3:17460928-17460947 None:intergenic 50.0%
AGATGGACCACCATTGTGTG+TGG - chr4_3:17461064-17461083 Msa0632970:intron 50.0%
GATGGACCACCATTGTGTGT+GGG - chr4_3:17461065-17461084 Msa0632970:intron 50.0%
GCAGTAACGATGCAGTCACT+AGG + chr4_3:17461415-17461434 None:intergenic 50.0%
CAAGAGAGCTAGGTGTTCCA+GGG + chr4_3:17461472-17461491 None:intergenic 50.0%
TCACACTCAATGCGAAAGCG+AGG + chr4_3:17461598-17461617 None:intergenic 50.0%
CGCTTTCGCATTGAGTGTGA+TGG - chr4_3:17461598-17461617 Msa0632970:intron 50.0%
GGCGTTATGATCTTGGTCGT+CGG - chr4_3:17462313-17462332 Msa0632970:intron 50.0%
GTTTACACATGGGGGAAACG+AGG + chr4_3:17463238-17463257 None:intergenic 50.0%
TACTCGAGACCTTGTAGAGC+TGG + chr4_3:17463741-17463760 None:intergenic 50.0%
! CCCGGTTTTCACTCTGTTTC+AGG - chr4_3:17463870-17463889 Msa0632970:intron 50.0%
GAAATGGAGGGAGCAATGAG+AGG - chr4_3:17464209-17464228 Msa0632970:five_prime_UTR 50.0%
AATGGAGGGAGCAATGAGAG+GGG - chr4_3:17464211-17464230 Msa0632970:five_prime_UTR 50.0%
!! CAATGAGAGGGGGAAGTGTT+AGG - chr4_3:17464222-17464241 Msa0632970:five_prime_UTR 50.0%
!! GAGGGGGAAGTGTTAGGTTA+TGG - chr4_3:17464228-17464247 Msa0632970:five_prime_UTR 50.0%
! GATCTGGAGCTACGATGGCA+TGG - chr4_3:17458805-17458824 Msa0632970:three_prime_UTR 55.0%
ATGCAGTCACGATGCGGTCA+TGG - chr4_3:17460392-17460411 Msa0632970:intron 55.0%
TGGGCGATGTGTGCTGAAGA+TGG - chr4_3:17461047-17461066 Msa0632970:intron 55.0%
CAGTCACTAGGGACGTCTCA+AGG + chr4_3:17461403-17461422 None:intergenic 55.0%
GCAAGAGAGCTAGGTGTTCC+AGG + chr4_3:17461473-17461492 None:intergenic 55.0%
!! CTCGGTGTCAGTGTCTCGTT+TGG + chr4_3:17463047-17463066 None:intergenic 55.0%
CGAAGGATGCCAGCTCTACA+AGG - chr4_3:17463729-17463748 Msa0632970:intron 55.0%
ATGGAGGGAGCAATGAGAGG+GGG - chr4_3:17464212-17464231 Msa0632970:five_prime_UTR 55.0%
CAGTCACGATGCGGTCATGG+TGG - chr4_3:17460395-17460414 Msa0632970:intron 60.0%
ACACATGGGGGAAACGAGGG+TGG + chr4_3:17463234-17463253 None:intergenic 60.0%
! GGCATCGAGGCGGCTTGAGC+TGG + chr4_3:17460918-17460937 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 17458470 17464455 17458470 ID=Msa0632970;Name=Msa0632970
chr4_3 mRNA 17458470 17464455 17458470 ID=Msa0632970-mRNA-1;Parent=Msa0632970;Name=Msa0632970-mRNA-1;_AED=0.07;_eAED=0.07;_QI=328|1|1|1|1|1|7|664|305
chr4_3 exon 17458470 17459253 17458470 ID=Msa0632970-mRNA-1:exon:4948;Parent=Msa0632970-mRNA-1
chr4_3 exon 17460575 17460640 17460575 ID=Msa0632970-mRNA-1:exon:4947;Parent=Msa0632970-mRNA-1
chr4_3 exon 17461252 17461337 17461252 ID=Msa0632970-mRNA-1:exon:4946;Parent=Msa0632970-mRNA-1
chr4_3 exon 17461413 17461536 17461413 ID=Msa0632970-mRNA-1:exon:4945;Parent=Msa0632970-mRNA-1
chr4_3 exon 17461788 17461879 17461788 ID=Msa0632970-mRNA-1:exon:4944;Parent=Msa0632970-mRNA-1
chr4_3 exon 17461973 17462192 17461973 ID=Msa0632970-mRNA-1:exon:4943;Parent=Msa0632970-mRNA-1
chr4_3 exon 17463918 17464455 17463918 ID=Msa0632970-mRNA-1:exon:4942;Parent=Msa0632970-mRNA-1
chr4_3 five_prime_UTR 17464128 17464455 17464128 ID=Msa0632970-mRNA-1:five_prime_utr;Parent=Msa0632970-mRNA-1
chr4_3 CDS 17463918 17464127 17463918 ID=Msa0632970-mRNA-1:cds;Parent=Msa0632970-mRNA-1
chr4_3 CDS 17461973 17462192 17461973 ID=Msa0632970-mRNA-1:cds;Parent=Msa0632970-mRNA-1
chr4_3 CDS 17461788 17461879 17461788 ID=Msa0632970-mRNA-1:cds;Parent=Msa0632970-mRNA-1
chr4_3 CDS 17461413 17461536 17461413 ID=Msa0632970-mRNA-1:cds;Parent=Msa0632970-mRNA-1
chr4_3 CDS 17461252 17461337 17461252 ID=Msa0632970-mRNA-1:cds;Parent=Msa0632970-mRNA-1
chr4_3 CDS 17460575 17460640 17460575 ID=Msa0632970-mRNA-1:cds;Parent=Msa0632970-mRNA-1
chr4_3 CDS 17459134 17459253 17459134 ID=Msa0632970-mRNA-1:cds;Parent=Msa0632970-mRNA-1
chr4_3 three_prime_UTR 17458470 17459133 17458470 ID=Msa0632970-mRNA-1:three_prime_utr;Parent=Msa0632970-mRNA-1
Gene Sequence

>Msa0632970

ATGCATAGATCTGGAGCTACGATGGCATGGAACGTGTTCAAGTTCTGCACAGCTTTACGAGGACTTGGTTCGATTATGATTTTGTTGGTTCTTGGTGTTGTTGGTGTTACTTATTATGCTGTTGTTATTACCAATTATGTTCCTTCTTTGTATAATGGAGGGTTTGATTCTCTTATTGCTGTCTTGGTTTTGATCTTGTTTCATGCTTTGTTGGTTATGCTATTGTGGAGTTATTTTTCCGTAGTTTTTATTGACCCTGGAAGTGTACCTCCAAACTGGAGGCCTACAATTGATGAGGAGAGAGGAGAGGAAGATCCATTAGTTGGGTTAGAGTTCAGTAACATGCAGAGTGATCCATCTAATCAACGGATCCGGTATTGTAGGAAGTGCAACCAGCTCAAGCCGCCTCGATGCCATCATTGTTCAGTTTGTGGGCGATGTGTGCTGAAGATGGACCACCATTGTGTGTGGGTAGTTAACTGTGTTGGGGCTCTAAATTACAAGTATTTCCTTCTTTTCTTGTTTTATACTTTCCTTGAGACGTCCCTAGTGACTGCATCGTTACTGCCGCATTTCATAGCATTCTTTAGTGATGGAGAAATCCCTGGAACACCTAGCTCTCTTGCTACAACTTTTCTTGCTTTTGTTTTGAACCTCGCTTTCGCATTGAGTGTGATGGGATTTCTGATTATGCACATATCATTGGTTGCTGCTAATACAACCACTATTGAGGCATATGAGAAGAAAACTACTCCAAAATGGCGTTATGATCTTGGTCGTCGGAAAAATTTTGAACAGGTTTTTGGGACGGACAAGAAATACTGGTTCATTCCTGCTTATTCAGAAGAAGATATTCGAAGGATGCCAGCTCTACAAGGTCTCGAGTATCCATCAAAACCCGACTTCGATTCCCAATAG
Protein sequence

>Msa0632970

MHRSGATMAWNVFKFCTALRGLGSIMILLVLGVVGVTYYAVVITNYVPSLYNGGFDSLIAVLVLILFHALLVMLLWSYFSVVFIDPGSVPPNWRPTIDEERGEEDPLVGLEFSNMQSDPSNQRIRYCRKCNQLKPPRCHHCSVCGRCVLKMDHHCVWVVNCVGALNYKYFLLFLFYTFLETSLVTASLLPHFIAFFSDGEIPGTPSSLATTFLAFVLNLAFALSVMGFLIMHISLVAANTTTIEAYEKKTTPKWRYDLGRRKNFEQVFGTDKKYWFIPAYSEEDIRRMPALQGLEYPSKPDFDSQ*