AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0285740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0285740 MtrunA17_Chr2g0302051 92.857 168 6 2 1 164 1 166 3.34e-103 293
Msa0285740 MtrunA17_Chr5g0417481 35.256 156 91 5 14 162 11 163 6.80e-22 86.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0285740 AT1G48350.1 81.102 127 24 0 38 164 44 170 1.65e-73 218
Msa0285740 AT1G14205.1 40.476 126 71 2 38 162 45 167 5.23e-21 84.7
Msa0285740 AT3G17626.1 71.053 38 11 0 111 148 10 47 4.62e-13 60.8

Find 58 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGACAATCTTGGTCTTTC+GGG 0.186347 2_3:+25720030 None:intergenic
CTATCTTTCTATCTATCTAT+TGG 0.249867 2_3:+25722461 None:intergenic
GACTGACAATCTTGGTCTTT+CGG 0.258728 2_3:+25720029 None:intergenic
TTATGCAAGACTCTTGTAAA+AGG 0.277194 2_3:+25718622 None:intergenic
TAAAGAGGAAGAAGAGGAAT+TGG 0.277806 2_3:+25722332 None:intergenic
ACAAATAAACATCTAAGAAA+TGG 0.317953 2_3:+25718650 None:intergenic
ATGTCTAAATTTGTAACCTT+TGG 0.321815 2_3:-25718758 Msa0285740:three_prime_UTR
CAATAGATAGATAGAAAGAT+AGG 0.324605 2_3:-25722460 Msa0285740:five_prime_UTR
TTCTTCCTCTTTATCTTTCG+TGG 0.341230 2_3:-25722322 Msa0285740:CDS
ACAAGAGTCTTGCATAAAAC+GGG 0.356058 2_3:-25718616 Msa0285740:three_prime_UTR
TGCAAAATCCTGTCTGGAAA+AGG 0.365576 2_3:-25718901 Msa0285740:CDS
TATTACTCAGACTAATAATA+AGG 0.373027 2_3:+25722508 None:intergenic
TTCTCTTCGAGTAGTGGCTT+TGG 0.393008 2_3:+25722293 None:intergenic
TACAAGAGTCTTGCATAAAA+CGG 0.396759 2_3:-25718617 Msa0285740:three_prime_UTR
TTGGACAAAGAGATGCTTGT+TGG 0.418067 2_3:+25719999 None:intergenic
GCTTTAACACGGCCATGGTA+TGG 0.425794 2_3:+25718843 None:intergenic
GCAAAATCCTGTCTGGAAAA+GGG 0.439844 2_3:-25718900 Msa0285740:CDS
TATCAGGAACTTACAATTGT+AGG 0.452312 2_3:+25719889 None:intergenic
TTAGTCTGAGTAATAGTTGA+AGG 0.457824 2_3:-25722500 Msa0285740:five_prime_UTR
CAAATAAACATCTAAGAAAT+GGG 0.458022 2_3:+25718651 None:intergenic
TGAGTAATAGTTGAAGGATA+AGG 0.466188 2_3:-25722494 Msa0285740:five_prime_UTR
CGGGGTGCTTAAAACGCAAA+TGG 0.467557 2_3:-25718597 Msa0285740:three_prime_UTR
AAAGAGGAAGAAGAGGAATT+GGG 0.468467 2_3:+25722333 None:intergenic
GATCATTGCAAAATCCTGTC+TGG 0.470319 2_3:-25718907 Msa0285740:CDS
GATCGGAAGACTGACAATCT+TGG 0.473706 2_3:+25720021 None:intergenic
GAAGAAGAGGAATTGGGATT+CGG 0.480913 2_3:+25722339 None:intergenic
CAAAGAGATGCTTGTTGGAT+CGG 0.490439 2_3:+25720004 None:intergenic
ACAAAGGTTGCCTTTGACAG+AGG 0.490596 2_3:-25718873 Msa0285740:CDS
CTTTAACACGGCCATGGTAT+GGG 0.511001 2_3:+25718844 None:intergenic
TCTGTCTTCTCTTCGAGTAG+TGG 0.511964 2_3:+25722287 None:intergenic
GAAGAGTTGAACTTCACCTC+TGG 0.512553 2_3:-25719913 Msa0285740:CDS
GAGGAATTGGGATTCGGCGT+TGG 0.514605 2_3:+25722345 None:intergenic
GAAAGATAAAGAGGAAGAAG+AGG 0.514796 2_3:+25722326 None:intergenic
AGGGAAATGTGCAAGAATGA+AGG 0.531211 2_3:+25722394 None:intergenic
TCTTTGTGTCGTCAATCACT+TGG 0.534536 2_3:+25719980 None:intergenic
CAAAATCCTGTCTGGAAAAG+GGG 0.536035 2_3:-25718899 Msa0285740:CDS
GAACAAAGAAGAGGAAGAAG+AGG 0.542628 2_3:+25722374 None:intergenic
AACAAAGAAGAGGAAGAAGA+GGG 0.544913 2_3:+25722375 None:intergenic
CCATGTTCGTATCAGAAAGA+AGG 0.545328 2_3:-25722256 Msa0285740:intron
CCTTCTTTCTGATACGAACA+TGG 0.554939 2_3:+25722256 None:intergenic
AATAGATAGATAGAAAGATA+GGG 0.561214 2_3:-25722459 Msa0285740:five_prime_UTR
GCTGATGCAGCTCGTGAACA+TGG 0.568077 2_3:-25718816 Msa0285740:CDS
TGGGTAACCACCTCTGTCAA+AGG 0.568643 2_3:+25718863 None:intergenic
TTCAACCACGAAAGATAAAG+AGG 0.573055 2_3:+25722317 None:intergenic
TGGGTAGATAAATACTAACT+AGG 0.581230 2_3:+25718670 None:intergenic
GCTTCAGGAAGTAGCAAAGA+GGG 0.581508 2_3:-25718937 Msa0285740:intron
TTCAGCTTCGACAATGCAGA+AGG 0.586530 2_3:-25719944 Msa0285740:CDS
AAGGTTGCCTTTGACAGAGG+TGG 0.595827 2_3:-25718870 Msa0285740:CDS
CAATAGCTTTAACACGGCCA+TGG 0.626600 2_3:+25718838 None:intergenic
CATCAGCAATAGCTTTAACA+CGG 0.638165 2_3:+25718832 None:intergenic
TGCTTCAGGAAGTAGCAAAG+AGG 0.655766 2_3:-25718938 Msa0285740:intron
TCAGGAAGTAGCAAAGAGGG+TGG 0.657714 2_3:-25718934 Msa0285740:intron
CAGGAAGTAGCAAAGAGGGT+GGG 0.658309 2_3:-25718933 Msa0285740:CDS
TGGAACTGTGAACAAAGAAG+AGG 0.661759 2_3:+25722365 None:intergenic
CAAGAGTCTTGCATAAAACG+GGG 0.662733 2_3:-25718615 Msa0285740:three_prime_UTR
TCTGGAAAAGGGGATCACAA+AGG 0.676716 2_3:-25718889 Msa0285740:CDS
ACTTACAATTGTAGGACCAG+AGG 0.688517 2_3:+25719897 None:intergenic
AGAGGTGGTTACCCATACCA+TGG 0.695112 2_3:-25718855 Msa0285740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAAAATTACTTGAT+TGG - chr2_3:25719679-25719698 Msa0285740:intron 10.0%
!! AAAAAAAAAATTACTTGATT+GGG - chr2_3:25719680-25719699 Msa0285740:intron 10.0%
!! CAATTAAATTAATATCAATT+TGG + chr2_3:25719918-25719937 None:intergenic 10.0%
!! ATTGATATTAATTTAATTGA+AGG - chr2_3:25719919-25719938 Msa0285740:CDS 10.0%
!! TTGATATTAATTTAATTGAA+GGG - chr2_3:25719920-25719939 Msa0285740:CDS 10.0%
!! AATATATTAGTTATTACAAT+TGG + chr2_3:25721634-25721653 None:intergenic 10.0%
!! TTCAAACAAAACAAAAAATA+TGG + chr2_3:25719036-25719055 None:intergenic 15.0%
!!! TAGTAGTTTGATTAATATTT+TGG - chr2_3:25719073-25719092 Msa0285740:intron 15.0%
!!! AGTAGTTTGATTAATATTTT+GGG - chr2_3:25719074-25719093 Msa0285740:intron 15.0%
!!! AGTTTAATACCTAATTTTAA+TGG - chr2_3:25719797-25719816 Msa0285740:intron 15.0%
!! AAATATAGATGTATATTTAC+AGG + chr2_3:25720167-25720186 None:intergenic 15.0%
!!! TTGATAATGATAAAAGATAT+GGG - chr2_3:25720389-25720408 Msa0285740:intron 15.0%
!!! CAATTTTTTTTTTGTAAATC+CGG + chr2_3:25720805-25720824 None:intergenic 15.0%
!!! AAATCATTTTATGATTTTTC+AGG - chr2_3:25721022-25721041 Msa0285740:intron 15.0%
!! TAATAAGTATTTAAGAAAAC+AGG + chr2_3:25721327-25721346 None:intergenic 15.0%
!! AAAAAATTGTTTAAATCCAA+AGG + chr2_3:25722347-25722366 None:intergenic 15.0%
!! TATTACTCAGACTAATAATA+AGG + chr2_3:25718581-25718600 None:intergenic 20.0%
!! AATAGATAGATAGAAAGATA+GGG - chr2_3:25718627-25718646 Msa0285740:three_prime_UTR 20.0%
!!! CAATTATTACTGCTAAATTT+TGG - chr2_3:25718989-25719008 Msa0285740:intron 20.0%
!! AACATAGTTAAAACATGTTA+GGG - chr2_3:25719246-25719265 Msa0285740:intron 20.0%
!!! TTTATCGTTGTTGTTTTTAT+CGG - chr2_3:25719271-25719290 Msa0285740:intron 20.0%
!!! TAATGGGAAAATAGTAATTT+TGG + chr2_3:25719415-25719434 None:intergenic 20.0%
!! GCAATTTATCAAAAGAATAA+TGG - chr2_3:25719631-25719650 Msa0285740:intron 20.0%
!! ATATCTACCTATATATAAAG+AGG + chr2_3:25719986-25720005 None:intergenic 20.0%
!! AATAAAAAAAATTCAGAACC+AGG + chr2_3:25720041-25720060 None:intergenic 20.0%
!! ACATTTAATCTACTAAAAGT+GGG + chr2_3:25720193-25720212 None:intergenic 20.0%
!!! CATATCTTTTATCATTATCA+AGG + chr2_3:25720390-25720409 None:intergenic 20.0%
!!! CTTGATAATGATAAAAGATA+TGG - chr2_3:25720388-25720407 Msa0285740:intron 20.0%
!! GAAATAAATGAAAGTAACAA+AGG - chr2_3:25720682-25720701 Msa0285740:intron 20.0%
!! CGGATTTACAAAAAAAAAAT+TGG - chr2_3:25720803-25720822 Msa0285740:intron 20.0%
!!! AAATTGGTTTTTGAAGAAAA+TGG - chr2_3:25720819-25720838 Msa0285740:intron 20.0%
!!! AGGAATTTTTATTATCATCA+GGG + chr2_3:25721307-25721326 None:intergenic 20.0%
!!! TTTAGTTTTATGCATTGTTA+TGG + chr2_3:25721365-25721384 None:intergenic 20.0%
!! ATATATCTTTCATTGAAATC+TGG + chr2_3:25721420-25721439 None:intergenic 20.0%
!!! TATCCAAGAATAAACTTTTT+GGG + chr2_3:25721514-25721533 None:intergenic 20.0%
!!! TTATCCAAGAATAAACTTTT+TGG + chr2_3:25721515-25721534 None:intergenic 20.0%
!!! AATTTTCGTTTACTAAATGT+CGG - chr2_3:25722103-25722122 Msa0285740:intron 20.0%
!! CAAATAAACATCTAAGAAAT+GGG + chr2_3:25722438-25722457 None:intergenic 20.0%
!! ACAAATAAACATCTAAGAAA+TGG + chr2_3:25722439-25722458 None:intergenic 20.0%
!!! ATGGAATTTTATGGAATATT+CGG - chr2_3:25722508-25722527 Msa0285740:five_prime_UTR 20.0%
! CTATCTTTCTATCTATCTAT+TGG + chr2_3:25718628-25718647 None:intergenic 25.0%
! CAATAGATAGATAGAAAGAT+AGG - chr2_3:25718626-25718645 Msa0285740:three_prime_UTR 25.0%
! CTAATCATTCATTACACTTT+CGG + chr2_3:25719119-25719138 None:intergenic 25.0%
! CAACATAGTTAAAACATGTT+AGG - chr2_3:25719245-25719264 Msa0285740:intron 25.0%
! ACGAAGGAGTAAATATTAAT+GGG + chr2_3:25719431-25719450 None:intergenic 25.0%
! AACGAAGGAGTAAATATTAA+TGG + chr2_3:25719432-25719451 None:intergenic 25.0%
!! CCATGTTTTCCATTAAAATT+AGG + chr2_3:25719809-25719828 None:intergenic 25.0%
!!! CCTAATTTTAATGGAAAACA+TGG - chr2_3:25719806-25719825 Msa0285740:intron 25.0%
!!! AATTTTAATGGAAAACATGG+TGG - chr2_3:25719809-25719828 Msa0285740:intron 25.0%
!!! ATTTTAATGGAAAACATGGT+GGG - chr2_3:25719810-25719829 Msa0285740:intron 25.0%
! TTAGCATCCTCTTTATATAT+AGG - chr2_3:25719976-25719995 Msa0285740:CDS 25.0%
! AAGCAACAATATACAACAAT+AGG + chr2_3:25720100-25720119 None:intergenic 25.0%
! CACATTTAATCTACTAAAAG+TGG + chr2_3:25720194-25720213 None:intergenic 25.0%
! GGATTATAAAGCACAATATT+AGG + chr2_3:25720512-25720531 None:intergenic 25.0%
! ATTGAGAGAATGTTCATAAA+AGG - chr2_3:25720540-25720559 Msa0285740:intron 25.0%
! TACTTGATTAATTGAGAATG+AGG - chr2_3:25720580-25720599 Msa0285740:intron 25.0%
! TGTAAATTTGTAAGTTTCTG+TGG - chr2_3:25720619-25720638 Msa0285740:intron 25.0%
!! GTTAGATTACTTCATGTTTT+AGG - chr2_3:25720723-25720742 Msa0285740:intron 25.0%
!!! TTTTTTTTGTAAATCCGGTT+CGG + chr2_3:25720800-25720819 None:intergenic 25.0%
!!! ACTGAACAAATTTTTTGGTT+CGG + chr2_3:25720859-25720878 None:intergenic 25.0%
!! ACCAAAAAATTTGTTCAGTT+TGG - chr2_3:25720860-25720879 Msa0285740:intron 25.0%
!!! ACCAAACTGAACAAATTTTT+TGG + chr2_3:25720864-25720883 None:intergenic 25.0%
!! AAAATTTGTTCAGTTTGGTT+TGG - chr2_3:25720865-25720884 Msa0285740:intron 25.0%
! TGAAATGATGTCTGTTAAAT+TGG - chr2_3:25720958-25720977 Msa0285740:intron 25.0%
!!! TTTATGATTTTTCAGGTTGA+AGG - chr2_3:25721029-25721048 Msa0285740:intron 25.0%
! TTTATTATCATCAGGGAATA+GGG + chr2_3:25721300-25721319 None:intergenic 25.0%
!! TTTTATTATCATCAGGGAAT+AGG + chr2_3:25721301-25721320 None:intergenic 25.0%
!! CAGGAATTTTTATTATCATC+AGG + chr2_3:25721308-25721327 None:intergenic 25.0%
!!! GAATAAACTTTTTGGGTAAT+AGG + chr2_3:25721507-25721526 None:intergenic 25.0%
! TTACCCAAAAAGTTTATTCT+TGG - chr2_3:25721508-25721527 Msa0285740:intron 25.0%
! TGACACTAGAAATTAAATCA+TGG - chr2_3:25721547-25721566 Msa0285740:intron 25.0%
! TAGAAATTAAATCATGGAGA+AGG - chr2_3:25721553-25721572 Msa0285740:intron 25.0%
! TTAGTTATTACAATTGGAAG+TGG + chr2_3:25721628-25721647 None:intergenic 25.0%
!! TTTCATTTTCATTGATCACA+AGG - chr2_3:25721663-25721682 Msa0285740:intron 25.0%
!! TTCATTTTCATTGATCACAA+GGG - chr2_3:25721664-25721683 Msa0285740:intron 25.0%
! ATATGTTCAGTAGCTATTAT+GGG + chr2_3:25721692-25721711 None:intergenic 25.0%
!!! AATGTTGATTTTAGAACTCA+AGG + chr2_3:25722296-25722315 None:intergenic 25.0%
! ATGTCTAAATTTGTAACCTT+TGG - chr2_3:25722328-25722347 Msa0285740:CDS 25.0%
! AAAAAAGTCACTTGAAAATG+AGG + chr2_3:25722381-25722400 None:intergenic 25.0%
!! AAAACGCAAATGGAATTTTA+TGG - chr2_3:25722499-25722518 Msa0285740:five_prime_UTR 25.0%
TTAGTCTGAGTAATAGTTGA+AGG - chr2_3:25718586-25718605 Msa0285740:three_prime_UTR 30.0%
TGAGTAATAGTTGAAGGATA+AGG - chr2_3:25718592-25718611 Msa0285740:three_prime_UTR 30.0%
ATTTGCGGGTTTGTAAATTA+TGG - chr2_3:25718912-25718931 Msa0285740:CDS 30.0%
! TGCACAATTAAGGACTATTT+TGG + chr2_3:25719172-25719191 None:intergenic 30.0%
!! TGTTTTTATCGGTCTGATTT+TGG - chr2_3:25719282-25719301 Msa0285740:intron 30.0%
ACTAACGAAATGCACAATAA+GGG - chr2_3:25719329-25719348 Msa0285740:intron 30.0%
TAATATTTACTCCTTCGTTC+AGG - chr2_3:25719433-25719452 Msa0285740:intron 30.0%
ACCTAATTGTGTATTCACTA+GGG + chr2_3:25719515-25719534 None:intergenic 30.0%
TACCTAATTGTGTATTCACT+AGG + chr2_3:25719516-25719535 None:intergenic 30.0%
AATTAGGTACAATGACAAAG+CGG - chr2_3:25719527-25719546 Msa0285740:intron 30.0%
GGAACTTAGAATAAGAACAA+AGG + chr2_3:25719592-25719611 None:intergenic 30.0%
AAAATCACTAGAACACTAGA+AGG + chr2_3:25719886-25719905 None:intergenic 30.0%
TAAAGAGGATGCTAAGTATT+TGG + chr2_3:25719971-25719990 None:intergenic 30.0%
! TTATGTGTTACTCAGAATGT+TGG - chr2_3:25720062-25720081 Msa0285740:intron 30.0%
AGATGTATATTTACAGGAGA+GGG + chr2_3:25720161-25720180 None:intergenic 30.0%
TAGATGTATATTTACAGGAG+AGG + chr2_3:25720162-25720181 None:intergenic 30.0%
TATTCCAAAAGCAACTGTTA+TGG - chr2_3:25720276-25720295 Msa0285740:intron 30.0%
!! TTTTCCATAACAGTTGCTTT+TGG + chr2_3:25720283-25720302 None:intergenic 30.0%
TTACTGATATCAAGTTTGAC+AGG - chr2_3:25720415-25720434 Msa0285740:intron 30.0%
TGAACATTCTCTCAATGAAA+TGG + chr2_3:25720536-25720555 None:intergenic 30.0%
AAAGTAACAAAGGAAGATAG+AGG - chr2_3:25720692-25720711 Msa0285740:intron 30.0%
!!! GATTACTTCATGTTTTAGGA+TGG - chr2_3:25720727-25720746 Msa0285740:intron 30.0%
! CTGATATAAGTTTTCTGAAC+CGG - chr2_3:25720762-25720781 Msa0285740:intron 30.0%
TGATATGATGAATTATGCAG+TGG - chr2_3:25720986-25721005 Msa0285740:intron 30.0%
GATATGATGAATTATGCAGT+GGG - chr2_3:25720987-25721006 Msa0285740:intron 30.0%
TATCAGGAACTTACAATTGT+AGG + chr2_3:25721200-25721219 None:intergenic 30.0%
! TAATTTAACTTCTGCCAGAT+TGG - chr2_3:25721242-25721261 Msa0285740:intron 30.0%
TTATTATCATCAGGGAATAG+GGG + chr2_3:25721299-25721318 None:intergenic 30.0%
AAATTAAATCATGGAGAAGG+AGG - chr2_3:25721556-25721575 Msa0285740:intron 30.0%
TATGTTCAGTAGCTATTATG+GGG + chr2_3:25721691-25721710 None:intergenic 30.0%
CATATGTTCAGTAGCTATTA+TGG + chr2_3:25721693-25721712 None:intergenic 30.0%
TAATAGCTACTGAACATATG+AGG - chr2_3:25721693-25721712 Msa0285740:intron 30.0%
ATTTGCTTGGTTGAACTTAT+TGG + chr2_3:25721798-25721817 None:intergenic 30.0%
AATAAGTTCAACCAAGCAAA+TGG - chr2_3:25721797-25721816 Msa0285740:intron 30.0%
! ATACAACAAGCTTTTAAGCA+AGG + chr2_3:25722067-25722086 None:intergenic 30.0%
TGGGTAGATAAATACTAACT+AGG + chr2_3:25722419-25722438 None:intergenic 30.0%
TTATGCAAGACTCTTGTAAA+AGG + chr2_3:25722467-25722486 None:intergenic 30.0%
TACAAGAGTCTTGCATAAAA+CGG - chr2_3:25722469-25722488 Msa0285740:five_prime_UTR 30.0%
AACAAAGAAGAGGAAGAAGA+GGG + chr2_3:25718714-25718733 None:intergenic 35.0%
AAAGAGGAAGAAGAGGAATT+GGG + chr2_3:25718756-25718775 None:intergenic 35.0%
TAAAGAGGAAGAAGAGGAAT+TGG + chr2_3:25718757-25718776 None:intergenic 35.0%
GAAAGATAAAGAGGAAGAAG+AGG + chr2_3:25718763-25718782 None:intergenic 35.0%
TTCTTCCTCTTTATCTTTCG+TGG - chr2_3:25718764-25718783 Msa0285740:three_prime_UTR 35.0%
TTCAACCACGAAAGATAAAG+AGG + chr2_3:25718772-25718791 None:intergenic 35.0%
TTATCCACCACTTGAATTTG+CGG - chr2_3:25718897-25718916 Msa0285740:CDS 35.0%
!! TGTTGCTAGAATTTGCTGAT+TGG - chr2_3:25718946-25718965 Msa0285740:intron 35.0%
TTGGAAGTTCGCTACATTTA+GGG + chr2_3:25719153-25719172 None:intergenic 35.0%
TTTGGAAGTTCGCTACATTT+AGG + chr2_3:25719154-25719173 None:intergenic 35.0%
ACTAACGAAGTGCACAATTA+AGG + chr2_3:25719182-25719201 None:intergenic 35.0%
GACTAACGAAATGCACAATA+AGG - chr2_3:25719328-25719347 Msa0285740:intron 35.0%
! TGCACAATAAGGGATTGTTT+TGG - chr2_3:25719339-25719358 Msa0285740:intron 35.0%
! TTTGGAATTTCGCTACATTG+AGG - chr2_3:25719357-25719376 Msa0285740:intron 35.0%
TTGGAATTTCGCTACATTGA+GGG - chr2_3:25719358-25719377 Msa0285740:intron 35.0%
GTTAAGGGTTAAGAAGTTAG+AGG + chr2_3:25719471-25719490 None:intergenic 35.0%
AATTGTGTATTCACTAGGGA+TGG + chr2_3:25719511-25719530 None:intergenic 35.0%
TCCCTAGTGAATACACAATT+AGG - chr2_3:25719511-25719530 Msa0285740:intron 35.0%
GCAGCTTCATAAACATCAAT+AGG + chr2_3:25719613-25719632 None:intergenic 35.0%
!! ACAAAGCTGATTTTGATACC+TGG - chr2_3:25720020-25720039 Msa0285740:CDS 35.0%
GAGTTGAGAAAACTAACACT+AGG + chr2_3:25720306-25720325 None:intergenic 35.0%
! TCAAGTTTGACAGGACATTT+TGG - chr2_3:25720424-25720443 Msa0285740:intron 35.0%
!!! ACATTTTGGTTTTGCTTCTC+TGG - chr2_3:25720438-25720457 Msa0285740:intron 35.0%
ACATTCTCTCAATGAAATGG+AGG + chr2_3:25720533-25720552 None:intergenic 35.0%
TAATCAAGTAATCCTGCTAC+TGG + chr2_3:25720570-25720589 None:intergenic 35.0%
CGGTTCAGAAAACTTATATC+AGG + chr2_3:25720764-25720783 None:intergenic 35.0%
ACAACACTTACGAACTTCTA+GGG + chr2_3:25720913-25720932 None:intergenic 35.0%
AACAACACTTACGAACTTCT+AGG + chr2_3:25720914-25720933 None:intergenic 35.0%
AAAGAACTTCAGGATGCAAA+GGG + chr2_3:25721604-25721623 None:intergenic 35.0%
AAAAGAACTTCAGGATGCAA+AGG + chr2_3:25721605-25721624 None:intergenic 35.0%
TGTTGTAGAAATCCACGATA+TGG + chr2_3:25721744-25721763 None:intergenic 35.0%
!!! ATTCCAGGGGAGTTTTTTTA+AGG + chr2_3:25721772-25721791 None:intergenic 35.0%
AACTTATTGGTAGATTCCAG+GGG + chr2_3:25721785-25721804 None:intergenic 35.0%
GAACTTATTGGTAGATTCCA+GGG + chr2_3:25721786-25721805 None:intergenic 35.0%
TGAACTTATTGGTAGATTCC+AGG + chr2_3:25721787-25721806 None:intergenic 35.0%
!! GTTTTTGAAGACCATTTGCT+TGG + chr2_3:25721811-25721830 None:intergenic 35.0%
! TTTTAAGCAAGGAAGACTGA+GGG + chr2_3:25722056-25722075 None:intergenic 35.0%
CAATACAGTTTGAAAGGATC+AGG + chr2_3:25722130-25722149 None:intergenic 35.0%
CTGAAGCAATACAGTTTGAA+AGG + chr2_3:25722136-25722155 None:intergenic 35.0%
CTTTCAAACTGTATTGCTTC+AGG - chr2_3:25722134-25722153 Msa0285740:intron 35.0%
!! CATCAGCAATAGCTTTAACA+CGG + chr2_3:25722257-25722276 None:intergenic 35.0%
ACAAGAGTCTTGCATAAAAC+GGG - chr2_3:25722470-25722489 Msa0285740:five_prime_UTR 35.0%
AGGGAAATGTGCAAGAATGA+AGG + chr2_3:25718695-25718714 None:intergenic 40.0%
GAACAAAGAAGAGGAAGAAG+AGG + chr2_3:25718715-25718734 None:intergenic 40.0%
TGGAACTGTGAACAAAGAAG+AGG + chr2_3:25718724-25718743 None:intergenic 40.0%
GAAGAAGAGGAATTGGGATT+CGG + chr2_3:25718750-25718769 None:intergenic 40.0%
CCTTCTTTCTGATACGAACA+TGG + chr2_3:25718833-25718852 None:intergenic 40.0%
CCATGTTCGTATCAGAAAGA+AGG - chr2_3:25718830-25718849 Msa0285740:CDS 40.0%
TATCCACCACTTGAATTTGC+GGG - chr2_3:25718898-25718917 Msa0285740:CDS 40.0%
TACAAACCCGCAAATTCAAG+TGG + chr2_3:25718907-25718926 None:intergenic 40.0%
CTACATTTAGGGGACTATTG+TGG + chr2_3:25719142-25719161 None:intergenic 40.0%
TGGAAGTTCGCTACATTTAG+GGG + chr2_3:25719152-25719171 None:intergenic 40.0%
AGCTCAACTGTTTGCGTTAA+GGG + chr2_3:25719486-25719505 None:intergenic 40.0%
TAGCTCAACTGTTTGCGTTA+AGG + chr2_3:25719487-25719506 None:intergenic 40.0%
! AGTATCGTGTATTTTCGCGA+AGG + chr2_3:25719746-25719765 None:intergenic 40.0%
ATTAAATGTGTGTCTGTGCG+AGG - chr2_3:25720204-25720223 Msa0285740:intron 40.0%
TTAAATGTGTGTCTGTGCGA+GGG - chr2_3:25720205-25720224 Msa0285740:intron 40.0%
TCTACTCGAAGCAAGATTTG+AGG - chr2_3:25720351-25720370 Msa0285740:intron 40.0%
ATAAAAGGTTGTCCAGTAGC+AGG - chr2_3:25720555-25720574 Msa0285740:intron 40.0%
CATGAAGTAATCTAACTGCC+TGG + chr2_3:25720719-25720738 None:intergenic 40.0%
!! TTTGTAAATCCGGTTCGGTT+TGG + chr2_3:25720795-25720814 None:intergenic 40.0%
CAACACTTACGAACTTCTAG+GGG + chr2_3:25720912-25720931 None:intergenic 40.0%
! ACTGACAATCTTGGTCTTTC+GGG + chr2_3:25721059-25721078 None:intergenic 40.0%
! GACTGACAATCTTGGTCTTT+CGG + chr2_3:25721060-25721079 None:intergenic 40.0%
! CAAAGAGATGCTTGTTGGAT+CGG + chr2_3:25721085-25721104 None:intergenic 40.0%
TTGGACAAAGAGATGCTTGT+TGG + chr2_3:25721090-25721109 None:intergenic 40.0%
TCTTTGTGTCGTCAATCACT+TGG + chr2_3:25721109-25721128 None:intergenic 40.0%
ACTTACAATTGTAGGACCAG+AGG + chr2_3:25721192-25721211 None:intergenic 40.0%
TGGAAGTGGAAAAGAACTTC+AGG + chr2_3:25721614-25721633 None:intergenic 40.0%
GTTCCTTAAAAAAACTCCCC+TGG - chr2_3:25721766-25721785 Msa0285740:intron 40.0%
! CTTTTAAGCAAGGAAGACTG+AGG + chr2_3:25722057-25722076 None:intergenic 40.0%
GATCATTGCAAAATCCTGTC+TGG - chr2_3:25722179-25722198 Msa0285740:intron 40.0%
TGCAAAATCCTGTCTGGAAA+AGG - chr2_3:25722185-25722204 Msa0285740:intron 40.0%
GCAAAATCCTGTCTGGAAAA+GGG - chr2_3:25722186-25722205 Msa0285740:intron 40.0%
CAAAATCCTGTCTGGAAAAG+GGG - chr2_3:25722187-25722206 Msa0285740:intron 40.0%
CAAGAGTCTTGCATAAAACG+GGG - chr2_3:25722471-25722490 Msa0285740:five_prime_UTR 40.0%
TTCTCTTCGAGTAGTGGCTT+TGG + chr2_3:25718796-25718815 None:intergenic 45.0%
TCTGTCTTCTCTTCGAGTAG+TGG + chr2_3:25718802-25718821 None:intergenic 45.0%
AAACCCGCAAATTCAAGTGG+TGG + chr2_3:25718904-25718923 None:intergenic 45.0%
GCTACATTGAGGGACTATTG+TGG - chr2_3:25719368-25719387 Msa0285740:intron 45.0%
CCTAGTTCAAACCTGAACGA+AGG + chr2_3:25719447-25719466 None:intergenic 45.0%
! CCTTCGTTCAGGTTTGAACT+AGG - chr2_3:25719444-25719463 Msa0285740:intron 45.0%
! TGGTGGGTCAATGCTTTGAT+CGG - chr2_3:25719826-25719845 Msa0285740:intron 45.0%
! AGAGGGTGCAAAACTAGTCA+AGG + chr2_3:25720144-25720163 None:intergenic 45.0%
ACAAAGGAAGATAGAGGACC+AGG - chr2_3:25720698-25720717 Msa0285740:intron 45.0%
!! GGTTCGGTTTGGTTCAAAAC+CGG + chr2_3:25720784-25720803 None:intergenic 45.0%
!!! GGTTTTGAACCAAACCGAAC+CGG - chr2_3:25720783-25720802 Msa0285740:intron 45.0%
GATCGGAAGACTGACAATCT+TGG + chr2_3:25721068-25721087 None:intergenic 45.0%
TTCAGCTTCGACAATGCAGA+AGG - chr2_3:25721142-25721161 Msa0285740:intron 45.0%
GAAGAGTTGAACTTCACCTC+TGG - chr2_3:25721173-25721192 Msa0285740:intron 45.0%
GAGAAACGTAACAGCGTATC+AGG + chr2_3:25721216-25721235 None:intergenic 45.0%
ACACAACACTGAGTCCAATC+TGG + chr2_3:25721259-25721278 None:intergenic 45.0%
TGATTGCAGACATGATCACG+AGG - chr2_3:25721388-25721407 Msa0285740:intron 45.0%
GATTGCAGACATGATCACGA+GGG - chr2_3:25721389-25721408 Msa0285740:intron 45.0%
! GGGTGTCATGCTTCTGTAAA+GGG + chr2_3:25721584-25721603 None:intergenic 45.0%
! AGGGTGTCATGCTTCTGTAA+AGG + chr2_3:25721585-25721604 None:intergenic 45.0%
TGCTTCAGGAAGTAGCAAAG+AGG - chr2_3:25722148-25722167 Msa0285740:intron 45.0%
GCTTCAGGAAGTAGCAAAGA+GGG - chr2_3:25722149-25722168 Msa0285740:intron 45.0%
TCTGGAAAAGGGGATCACAA+AGG - chr2_3:25722197-25722216 Msa0285740:intron 45.0%
ACAAAGGTTGCCTTTGACAG+AGG - chr2_3:25722213-25722232 Msa0285740:intron 45.0%
CTTTAACACGGCCATGGTAT+GGG + chr2_3:25722245-25722264 None:intergenic 45.0%
!! CAATAGCTTTAACACGGCCA+TGG + chr2_3:25722251-25722270 None:intergenic 45.0%
!! AATTAAATTAATATCAATTT+GGG + chr2_3:25719917-25719936 None:intergenic 5.0%
! GCTTTGACTCGAAAGCACAG+TGG - chr2_3:25721715-25721734 Msa0285740:intron 50.0%
TCAGGAAGTAGCAAAGAGGG+TGG - chr2_3:25722152-25722171 Msa0285740:intron 50.0%
CAGGAAGTAGCAAAGAGGGT+GGG - chr2_3:25722153-25722172 Msa0285740:intron 50.0%
! TGTGATCCCCTTTTCCAGAC+AGG + chr2_3:25722196-25722215 None:intergenic 50.0%
AAGGTTGCCTTTGACAGAGG+TGG - chr2_3:25722216-25722235 Msa0285740:intron 50.0%
TGGGTAACCACCTCTGTCAA+AGG + chr2_3:25722226-25722245 None:intergenic 50.0%
AGAGGTGGTTACCCATACCA+TGG - chr2_3:25722231-25722250 Msa0285740:intron 50.0%
GCTTTAACACGGCCATGGTA+TGG + chr2_3:25722246-25722265 None:intergenic 50.0%
! CGGGGTGCTTAAAACGCAAA+TGG - chr2_3:25722489-25722508 Msa0285740:five_prime_UTR 50.0%
GAGGAATTGGGATTCGGCGT+TGG + chr2_3:25718744-25718763 None:intergenic 55.0%
GCACAGTGGCTACCATATCG+TGG - chr2_3:25721729-25721748 Msa0285740:intron 55.0%
GCTGATGCAGCTCGTGAACA+TGG - chr2_3:25722270-25722289 Msa0285740:CDS 55.0%
! CTTCTAGGGGTGTGCGTGCA+TGG + chr2_3:25720899-25720918 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 25718569 25722539 25718569 ID=Msa0285740;Name=Msa0285740
chr2_3 mRNA 25718569 25722539 25718569 ID=Msa0285740-mRNA-1;Parent=Msa0285740;Name=Msa0285740-mRNA-1;_AED=0.01;_eAED=0.01;_QI=100|1|1|1|1|1|3|234|164
chr2_3 exon 25718569 25718952 25718569 ID=Msa0285740-mRNA-1:exon:9518;Parent=Msa0285740-mRNA-1
chr2_3 exon 25719903 25720064 25719903 ID=Msa0285740-mRNA-1:exon:9517;Parent=Msa0285740-mRNA-1
chr2_3 exon 25722257 25722539 25722257 ID=Msa0285740-mRNA-1:exon:9516;Parent=Msa0285740-mRNA-1
chr2_3 five_prime_UTR 25722440 25722539 25722440 ID=Msa0285740-mRNA-1:five_prime_utr;Parent=Msa0285740-mRNA-1
chr2_3 CDS 25722257 25722439 25722257 ID=Msa0285740-mRNA-1:cds;Parent=Msa0285740-mRNA-1
chr2_3 CDS 25719903 25720064 25719903 ID=Msa0285740-mRNA-1:cds;Parent=Msa0285740-mRNA-1
chr2_3 CDS 25718803 25718952 25718803 ID=Msa0285740-mRNA-1:cds;Parent=Msa0285740-mRNA-1
chr2_3 three_prime_UTR 25718569 25718802 25718569 ID=Msa0285740-mRNA-1:three_prime_utr;Parent=Msa0285740-mRNA-1
Gene Sequence

>Msa0285740

ATGTTAACTTCTTCACTCTCATTCCTTCATTCTTGCACATTTCCCTCTTCTTCCTCTTCTTTGTTCACAGTTCCAACGCCGAATCCCAATTCCTCTTCTTCCTCTTTATCTTTCGTGGTTGAAGCCAAAGCCACTACTCGAAGAGAAGACAGAACTGCTCGCCATGTTCGTATCAGAAAGAAGGTTGAAGGAACACCCGAAAGACCAAGATTGTCAGTCTTCCGATCCAACAAGCATCTCTTTGTCCAAGTGATTGACGACACAAAGATGCATACACTTGCTTCAGCTTCGACAATGCAGAAGGCAATTGCTGAAGAGTTGAACTTCACCTCTGGTCCTACAATTGAAGTAGCAAAGAGGGTGGGTGAGATCATTGCAAAATCCTGTCTGGAAAAGGGGATCACAAAGGTTGCCTTTGACAGAGGTGGTTACCCATACCATGGCCGTGTTAAAGCTATTGCTGATGCAGCTCGTGAACATGGCCTTGAGTTCTAA

Protein sequence

>Msa0285740

MLTSSLSFLHSCTFPSSSSSLFTVPTPNPNSSSSSLSFVVEAKATTRREDRTARHVRIRKKVEGTPERPRLSVFRSNKHLFVQVIDDTKMHTLASASTMQKAIAEELNFTSGPTIEVAKRVGEIIAKSCLEKGITKVAFDRGGYPYHGRVKAIADAAREHGLEF*