Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538250 | KEH29195.1 | 83.962 | 106 | 17 | 0 | 1 | 106 | 58 | 163 | 5.54e-57 | 185 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538250 | sp|A0AT31|NLTP5_LENCU | 75.000 | 104 | 26 | 0 | 3 | 106 | 4 | 107 | 4.58e-50 | 158 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538250 | A0A072UTH7 | 83.962 | 106 | 17 | 0 | 1 | 106 | 58 | 163 | 2.65e-57 | 185 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0072820 | Msa0538250 | 0.823324 | 1.472928e-53 | -8.615850e-47 |
| Msa0103780 | Msa0538250 | 0.802846 | 4.621252e-49 | -8.615850e-47 |
| Msa0157020 | Msa0538250 | 0.802212 | 6.244038e-49 | -8.615850e-47 |
| Msa0297920 | Msa0538250 | 0.802862 | 4.586271e-49 | -8.615850e-47 |
| Msa0487560 | Msa0538250 | 0.800984 | 1.115127e-48 | -8.615850e-47 |
| Msa0487620 | Msa0538250 | 0.804085 | 2.558109e-49 | -8.615850e-47 |
| Msa0538250 | Msa0545350 | 0.824770 | 6.742299e-54 | -8.615850e-47 |
| Msa0538250 | Msa0558820 | 0.808203 | 3.475128e-50 | -8.615850e-47 |
| Msa0538250 | Msa0581340 | 0.801088 | 1.062006e-48 | -8.615850e-47 |
| Msa0538250 | Msa0600390 | 0.816195 | 6.266958e-52 | -8.615850e-47 |
| Msa0538250 | Msa0638710 | 0.801188 | 1.013075e-48 | -8.615850e-47 |
| Msa0538250 | Msa0640880 | 0.848227 | 7.010909e-60 | -8.615850e-47 |
| Msa0538250 | Msa0738970 | 0.810673 | 1.025460e-50 | -8.615850e-47 |
| Msa0538250 | Msa0769800 | 0.802272 | 6.070984e-49 | -8.615850e-47 |
| Msa0538250 | Msa0803130 | 0.816277 | 6.009743e-52 | -8.615850e-47 |
| Msa0538250 | Msa0841490 | 0.812910 | 3.341708e-51 | -8.615850e-47 |
| Msa0538250 | Msa0859390 | 0.813363 | 2.658415e-51 | -8.615850e-47 |
| Msa0538250 | Msa0931610 | 0.804875 | 1.751376e-49 | -8.615850e-47 |
| Msa0538250 | Msa0955310 | 0.805569 | 1.252922e-49 | -8.615850e-47 |
| Msa0538250 | Msa1004500 | 0.805884 | 1.076191e-49 | -8.615850e-47 |
| Msa0538250 | Msa1022310 | 0.810493 | 1.121774e-50 | -8.615850e-47 |
| Msa0538250 | Msa1046870 | 0.819305 | 1.245376e-52 | -8.615850e-47 |
| Msa0538250 | Msa1232010 | 0.802092 | 6.611168e-49 | -8.615850e-47 |
| Msa0538250 | Msa1258810 | 0.827589 | 1.439354e-54 | -8.615850e-47 |
| Msa0538250 | Msa1274740 | 0.804055 | 2.596130e-49 | -8.615850e-47 |
| Msa0538250 | Msa1284030 | 0.803505 | 3.376228e-49 | -8.615850e-47 |
| Msa0538250 | Msa1312730 | 0.815591 | 8.549169e-52 | -8.615850e-47 |
| Msa0538250 | Msa1313460 | 0.831808 | 1.352968e-55 | -8.615850e-47 |
| Msa0538250 | Msa1330240 | 0.832669 | 8.282750e-56 | -8.615850e-47 |
| Msa0538250 | Msa1437150 | 0.810575 | 1.076768e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538250 | MtrunA17_Chr4g0012951 | 83.962 | 106 | 17 | 0 | 1 | 106 | 1 | 106 | 8.65e-61 | 182 |
| Msa0538250 | MtrunA17_Chr4g0012991 | 83.962 | 106 | 17 | 0 | 1 | 106 | 56 | 161 | 1.21e-58 | 179 |
| Msa0538250 | MtrunA17_Chr4g0013001 | 83.019 | 106 | 18 | 0 | 1 | 106 | 1 | 106 | 1.53e-58 | 176 |
| Msa0538250 | MtrunA17_Chr4g0012961 | 82.075 | 106 | 19 | 0 | 1 | 106 | 1 | 106 | 5.00e-58 | 175 |
| Msa0538250 | MtrunA17_Chr4g0013261 | 63.889 | 108 | 36 | 2 | 1 | 106 | 1 | 107 | 1.76e-41 | 133 |
| Msa0538250 | MtrunA17_Chr4g0013251 | 63.889 | 108 | 36 | 2 | 1 | 106 | 1 | 107 | 2.27e-40 | 130 |
| Msa0538250 | MtrunA17_Chr4g0012901 | 49.533 | 107 | 52 | 2 | 1 | 105 | 5 | 111 | 1.85e-29 | 103 |
| Msa0538250 | MtrunA17_Chr4g0013211 | 44.545 | 110 | 61 | 0 | 1 | 110 | 1 | 110 | 7.05e-28 | 99.0 |
| Msa0538250 | MtrunA17_Chr7g0244691 | 44.954 | 109 | 57 | 2 | 4 | 110 | 7 | 114 | 2.32e-26 | 95.5 |
| Msa0538250 | MtrunA17_Chr7g0244831 | 47.222 | 108 | 52 | 4 | 2 | 105 | 3 | 109 | 1.93e-25 | 93.2 |
| Msa0538250 | MtrunA17_Chr7g0244641 | 41.284 | 109 | 62 | 2 | 4 | 110 | 7 | 115 | 5.03e-25 | 92.0 |
| Msa0538250 | MtrunA17_Chr7g0244671 | 40.952 | 105 | 60 | 1 | 4 | 106 | 7 | 111 | 5.37e-25 | 92.8 |
| Msa0538250 | MtrunA17_Chr7g0244841 | 43.119 | 109 | 58 | 3 | 4 | 110 | 7 | 113 | 3.28e-24 | 89.7 |
| Msa0538250 | MtrunA17_Chr4g0012891 | 44.954 | 109 | 53 | 4 | 5 | 106 | 9 | 117 | 1.57e-23 | 88.2 |
| Msa0538250 | MtrunA17_Chr2g0309241 | 43.925 | 107 | 58 | 2 | 1 | 106 | 1 | 106 | 5.71e-23 | 86.7 |
| Msa0538250 | MtrunA17_Chr4g0012931 | 39.450 | 109 | 63 | 1 | 1 | 106 | 1 | 109 | 5.55e-21 | 82.0 |
| Msa0538250 | MtrunA17_Chr7g0244811 | 38.835 | 103 | 61 | 1 | 1 | 101 | 5 | 107 | 1.17e-20 | 80.9 |
| Msa0538250 | MtrunA17_Chr7g0244741 | 40.000 | 110 | 63 | 1 | 4 | 110 | 7 | 116 | 1.82e-18 | 75.1 |
| Msa0538250 | MtrunA17_Chr7g0244681 | 41.905 | 105 | 58 | 2 | 4 | 106 | 7 | 110 | 1.42e-17 | 72.8 |
| Msa0538250 | MtrunA17_Chr4g0012921 | 39.450 | 109 | 63 | 2 | 1 | 106 | 1 | 109 | 2.16e-17 | 72.4 |
| Msa0538250 | MtrunA17_Chr3g0107481 | 37.255 | 102 | 63 | 1 | 5 | 105 | 3 | 104 | 1.03e-16 | 70.5 |
| Msa0538250 | MtrunA17_Chr7g0233431 | 32.110 | 109 | 73 | 1 | 5 | 112 | 20 | 128 | 3.52e-16 | 69.7 |
| Msa0538250 | MtrunA17_Chr7g0244721 | 34.862 | 109 | 69 | 1 | 4 | 110 | 7 | 115 | 2.77e-15 | 67.0 |
| Msa0538250 | MtrunA17_Chr7g0244761 | 37.615 | 109 | 65 | 3 | 4 | 110 | 32 | 139 | 4.94e-15 | 67.0 |
| Msa0538250 | MtrunA17_Chr7g0244791 | 36.036 | 111 | 64 | 2 | 4 | 110 | 12 | 119 | 1.85e-14 | 65.1 |
| Msa0538250 | MtrunA17_Chr7g0244821 | 37.615 | 109 | 64 | 4 | 4 | 110 | 7 | 113 | 1.86e-14 | 65.1 |
| Msa0538250 | MtrunA17_Chr3g0105001 | 36.111 | 108 | 61 | 4 | 4 | 104 | 7 | 113 | 2.38e-14 | 64.7 |
| Msa0538250 | MtrunA17_Chr1g0165761 | 40.741 | 108 | 61 | 2 | 5 | 110 | 8 | 114 | 3.07e-14 | 64.3 |
| Msa0538250 | MtrunA17_Chr3g0105021 | 37.864 | 103 | 56 | 4 | 9 | 104 | 12 | 113 | 5.33e-14 | 63.9 |
| Msa0538250 | MtrunA17_Chr3g0105011 | 37.864 | 103 | 56 | 4 | 9 | 104 | 12 | 113 | 5.33e-14 | 63.9 |
| Msa0538250 | MtrunA17_Chr3g0104971 | 36.111 | 108 | 61 | 4 | 4 | 104 | 7 | 113 | 5.38e-14 | 63.9 |
| Msa0538250 | MtrunA17_Chr3g0104981 | 36.111 | 108 | 61 | 4 | 4 | 104 | 7 | 113 | 5.55e-14 | 63.5 |
| Msa0538250 | MtrunA17_Chr3g0104951 | 35.185 | 108 | 62 | 4 | 4 | 104 | 7 | 113 | 1.37e-13 | 62.8 |
| Msa0538250 | MtrunA17_Chr3g0104931 | 35.185 | 108 | 62 | 4 | 4 | 104 | 7 | 113 | 1.37e-13 | 62.8 |
| Msa0538250 | MtrunA17_Chr3g0104941 | 35.185 | 108 | 62 | 4 | 4 | 104 | 7 | 113 | 1.37e-13 | 62.8 |
| Msa0538250 | MtrunA17_Chr3g0104991 | 37.864 | 103 | 56 | 4 | 9 | 104 | 12 | 113 | 1.40e-13 | 62.8 |
| Msa0538250 | MtrunA17_Chr3g0105031 | 36.449 | 107 | 60 | 4 | 9 | 108 | 2 | 107 | 1.46e-13 | 62.4 |
| Msa0538250 | MtrunA17_Chr7g0244661 | 38.739 | 111 | 60 | 3 | 4 | 112 | 7 | 111 | 1.60e-13 | 62.4 |
| Msa0538250 | MtrunA17_Chr3g0104921 | 36.893 | 103 | 57 | 4 | 9 | 104 | 2 | 103 | 1.78e-13 | 62.0 |
| Msa0538250 | MtrunA17_Chr3g0104911 | 36.893 | 103 | 57 | 4 | 9 | 104 | 2 | 103 | 1.78e-13 | 62.0 |
| Msa0538250 | MtrunA17_Chr3g0104901 | 35.088 | 114 | 63 | 5 | 1 | 104 | 1 | 113 | 2.03e-13 | 62.4 |
| Msa0538250 | MtrunA17_Chr3g0105041 | 35.185 | 108 | 62 | 4 | 4 | 104 | 7 | 113 | 4.21e-13 | 61.6 |
| Msa0538250 | MtrunA17_Chr3g0095931 | 32.673 | 101 | 62 | 3 | 10 | 105 | 13 | 112 | 7.14e-13 | 60.8 |
| Msa0538250 | MtrunA17_Chr3g0104961 | 35.185 | 108 | 62 | 4 | 4 | 104 | 7 | 113 | 8.89e-13 | 60.5 |
| Msa0538250 | MtrunA17_Chr3g0101431 | 36.735 | 98 | 56 | 3 | 9 | 101 | 11 | 107 | 1.52e-12 | 60.1 |
| Msa0538250 | MtrunA17_Chr7g0244751 | 34.951 | 103 | 66 | 1 | 4 | 105 | 7 | 109 | 3.56e-12 | 58.9 |
| Msa0538250 | MtrunA17_Chr3g0095991 | 34.286 | 105 | 63 | 4 | 3 | 103 | 10 | 112 | 1.69e-11 | 57.4 |
| Msa0538250 | MtrunA17_Chr3g0094521 | 30.769 | 104 | 66 | 4 | 10 | 110 | 18 | 118 | 2.61e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538250 | AT5G59320.1 | 59.000 | 100 | 39 | 1 | 8 | 107 | 10 | 107 | 1.22e-35 | 119 |
| Msa0538250 | AT5G59310.1 | 59.596 | 99 | 35 | 3 | 8 | 106 | 10 | 103 | 7.98e-31 | 107 |
| Msa0538250 | AT2G38540.1 | 59.813 | 107 | 37 | 6 | 4 | 106 | 5 | 109 | 1.09e-30 | 106 |
| Msa0538250 | AT2G38530.1 | 58.491 | 106 | 40 | 4 | 4 | 106 | 5 | 109 | 1.46e-28 | 101 |
| Msa0538250 | AT2G15050.2 | 42.342 | 111 | 60 | 3 | 4 | 110 | 5 | 115 | 8.39e-25 | 91.7 |
| Msa0538250 | AT2G15050.3 | 42.342 | 111 | 60 | 3 | 4 | 110 | 5 | 115 | 1.11e-24 | 91.7 |
| Msa0538250 | AT2G15050.1 | 42.342 | 111 | 60 | 3 | 4 | 110 | 5 | 115 | 1.54e-24 | 91.3 |
| Msa0538250 | AT3G51600.1 | 50.943 | 106 | 48 | 4 | 4 | 106 | 5 | 109 | 3.51e-24 | 90.1 |
| Msa0538250 | AT3G51590.1 | 42.593 | 108 | 59 | 3 | 6 | 112 | 8 | 113 | 3.64e-23 | 87.4 |
| Msa0538250 | AT4G33355.2 | 51.163 | 86 | 40 | 1 | 24 | 107 | 28 | 113 | 2.54e-22 | 85.5 |
| Msa0538250 | AT4G33355.1 | 51.163 | 86 | 40 | 1 | 24 | 107 | 28 | 113 | 2.74e-22 | 85.5 |
| Msa0538250 | AT5G01870.1 | 44.231 | 104 | 50 | 4 | 9 | 105 | 4 | 106 | 1.45e-20 | 80.9 |
| Msa0538250 | AT3G08770.1 | 46.067 | 89 | 42 | 4 | 22 | 106 | 18 | 104 | 3.31e-17 | 72.0 |
| Msa0538250 | AT3G08770.2 | 46.067 | 89 | 42 | 4 | 22 | 106 | 18 | 104 | 3.94e-17 | 72.0 |
| Msa0538250 | AT2G18370.1 | 40.449 | 89 | 51 | 2 | 15 | 102 | 16 | 103 | 1.56e-16 | 70.5 |
Find 44 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTACTTGGTGAAATATTT+TGG | 0.097142 | 4_1:-17413361 | Msa0538250:three_prime_UTR |
| AGTGCTTCTGGTGCTATTTC+TGG | 0.124357 | 4_1:-17414077 | Msa0538250:CDS |
| TAAGTCAAAGGAAATAAAAT+TGG | 0.305567 | 4_1:-17413202 | Msa0538250:three_prime_UTR |
| CCATGCATTGCATATCTTAG+AGG | 0.320070 | 4_1:-17414200 | Msa0538250:CDS |
| TGGTTATATTTACAGCATTA+GGG | 0.341414 | 4_1:-17413562 | Msa0538250:intron |
| GTTGCAGCTCCAAAGTTATA+TGG | 0.353351 | 4_1:-17413527 | Msa0538250:CDS |
| CTTCTTATACCAGACTGTAT+TGG | 0.369553 | 4_1:-17413414 | Msa0538250:three_prime_UTR |
| CCATCTCCAGCATGCTGTGC+TGG | 0.375274 | 4_1:-17414167 | Msa0538250:CDS |
| AACTGCTTGAAAAGTGCTTC+TGG | 0.425870 | 4_1:-17414089 | Msa0538250:CDS |
| GAGAAGTTTCCATATAACTT+TGG | 0.427067 | 4_1:+17413518 | None:intergenic |
| AGCACAGCTGCTGGTCTCCC+TGG | 0.428467 | 4_1:-17414044 | Msa0538250:CDS |
| TTGCAAGCAGCCTGACGGTC+AGG | 0.428772 | 4_1:+17414110 | None:intergenic |
| CACCACCACACCTGACCGTC+AGG | 0.431390 | 4_1:-17414120 | Msa0538250:CDS |
| GTCAGGTGTGGTGGTGGCGG+CGG | 0.461362 | 4_1:+17414127 | None:intergenic |
| GTGCATGATTGTTGCACCTA+TGG | 0.467928 | 4_1:-17414267 | Msa0538250:CDS |
| CAGTCTGGTATAAGAAGGAT+AGG | 0.473305 | 4_1:+17413420 | None:intergenic |
| ACGGTCAGGTGTGGTGGTGG+CGG | 0.483285 | 4_1:+17414124 | None:intergenic |
| TTCACTCCAGCACAGCATGC+TGG | 0.485039 | 4_1:+17414161 | None:intergenic |
| AAGAATAATAATGAGAATGA+TGG | 0.485870 | 4_1:-17413463 | Msa0538250:three_prime_UTR |
| ATCTCATGTGGACAAGTAAC+TGG | 0.494105 | 4_1:-17414233 | Msa0538250:CDS |
| GGGAGACCAGCAGCTGTGCT+AGG | 0.501867 | 4_1:+17414047 | None:intergenic |
| GCATATCTTAGAGGTGGTGC+TGG | 0.504129 | 4_1:-17414191 | Msa0538250:CDS |
| TTATTCTTAATAGCATTAAG+TGG | 0.504877 | 4_1:+17413478 | None:intergenic |
| GTGGAGGTACTGATCTTGTA+AGG | 0.508470 | 4_1:+17414002 | None:intergenic |
| GCTGGTCTCCCTGGCAAATG+TGG | 0.511355 | 4_1:-17414035 | Msa0538250:CDS |
| ATGTTAACACCACATTTGCC+AGG | 0.518576 | 4_1:+17414026 | None:intergenic |
| CTGACGGTCAGGTGTGGTGG+TGG | 0.525863 | 4_1:+17414121 | None:intergenic |
| CAATACAGTCTGGTATAAGA+AGG | 0.533082 | 4_1:+17413415 | None:intergenic |
| TTGAATCCTAGCACAGCTGC+TGG | 0.547579 | 4_1:-17414053 | Msa0538250:CDS |
| CCAGCACAGCATGCTGGAGA+TGG | 0.550113 | 4_1:+17414167 | None:intergenic |
| TCTATCTACTAATAAGTCAA+AGG | 0.554766 | 4_1:-17413214 | Msa0538250:three_prime_UTR |
| TAAGACAATCCAATACAGTC+TGG | 0.567330 | 4_1:+17413405 | None:intergenic |
| AGCCTGACGGTCAGGTGTGG+TGG | 0.572781 | 4_1:+17414118 | None:intergenic |
| GAGATTGCAGCATCTGCCAT+AGG | 0.577723 | 4_1:+17414251 | None:intergenic |
| CCTCTAAGATATGCAATGCA+TGG | 0.588805 | 4_1:+17414200 | None:intergenic |
| AGCAGCCTGACGGTCAGGTG+TGG | 0.606881 | 4_1:+17414115 | None:intergenic |
| AATAATAATGAGAATGATGG+AGG | 0.609814 | 4_1:-17413460 | Msa0538250:three_prime_UTR |
| TGCATTGCATATCTTAGAGG+TGG | 0.623803 | 4_1:-17414197 | Msa0538250:CDS |
| AGCAGTTGCAAGCAGCCTGA+CGG | 0.624471 | 4_1:+17414105 | None:intergenic |
| TGTTAACACCACATTTGCCA+GGG | 0.642773 | 4_1:+17414027 | None:intergenic |
| AGTCTGGTATAAGAAGGATA+GGG | 0.652754 | 4_1:+17413421 | None:intergenic |
| GCAGATGCTGCAATCTCATG+TGG | 0.654132 | 4_1:-17414245 | Msa0538250:CDS |
| ATAAGAGTAATGACATAACC+AGG | 0.665259 | 4_1:+17413331 | None:intergenic |
| ATGGAGGCTCATCTTATGTG+TGG | 0.700286 | 4_1:-17413444 | Msa0538250:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTGTATGTTTATTAT+TGG | + | chr4_1:17413653-17413672 | None:intergenic | 10.0% |
| !!! | AATTTTTGTATGTTTATTAT+TGG | + | chr4_1:17413653-17413672 | None:intergenic | 10.0% |
| !! | TATTAACATAAAAGACTAAT+TGG | - | chr4_1:17413672-17413691 | Msa0538250:intron | 15.0% |
| !!! | TTTTTCTTACTTCTAAAATT+TGG | + | chr4_1:17413698-17413717 | None:intergenic | 15.0% |
| !!! | TTATTTTTTGGTGTTATTAT+TGG | - | chr4_1:17413834-17413853 | Msa0538250:intron | 15.0% |
| !!! | TTGATTAGTTTTTTTTTGTT+TGG | - | chr4_1:17413894-17413913 | Msa0538250:intron | 15.0% |
| !! | TATTAACATAAAAGACTAAT+TGG | - | chr4_1:17413672-17413691 | Msa0538250:intron | 15.0% |
| !!! | TTTTTCTTACTTCTAAAATT+TGG | + | chr4_1:17413698-17413717 | None:intergenic | 15.0% |
| !!! | TTATTTTTTGGTGTTATTAT+TGG | - | chr4_1:17413834-17413853 | Msa0538250:intron | 15.0% |
| !!! | TTGATTAGTTTTTTTTTGTT+TGG | - | chr4_1:17413894-17413913 | Msa0538250:intron | 15.0% |
| !!! | AAACGTTTTTGTGAATTTTT+TGG | - | chr4_1:17413760-17413779 | Msa0538250:intron | 20.0% |
| !! | TTATTCTTAATAGCATTAAG+TGG | + | chr4_1:17414001-17414020 | None:intergenic | 20.0% |
| !! | AAGAATAATAATGAGAATGA+TGG | - | chr4_1:17414013-17414032 | Msa0538250:CDS | 20.0% |
| !! | TAAGTCAAAGGAAATAAAAT+TGG | - | chr4_1:17414274-17414293 | Msa0538250:CDS | 20.0% |
| !!! | AAACGTTTTTGTGAATTTTT+TGG | - | chr4_1:17413760-17413779 | Msa0538250:intron | 20.0% |
| !! | TTATTCTTAATAGCATTAAG+TGG | + | chr4_1:17414001-17414020 | None:intergenic | 20.0% |
| !! | AAGAATAATAATGAGAATGA+TGG | - | chr4_1:17414013-17414032 | Msa0538250:CDS | 20.0% |
| !! | TAAGTCAAAGGAAATAAAAT+TGG | - | chr4_1:17414274-17414293 | Msa0538250:CDS | 20.0% |
| ! | GAAAAATATAGTAAGAGTGA+AGG | + | chr4_1:17413532-17413551 | None:intergenic | 25.0% |
| ! | TTAGGATTAATTAGTTGCTT+CGG | - | chr4_1:17413807-17413826 | Msa0538250:intron | 25.0% |
| !!! | TGCTTCGGTTATTTATTTTT+TGG | - | chr4_1:17413822-17413841 | Msa0538250:intron | 25.0% |
| ! | TTGGTTATATTTACAGCATT+AGG | - | chr4_1:17413913-17413932 | Msa0538250:intron | 25.0% |
| ! | TGGTTATATTTACAGCATTA+GGG | - | chr4_1:17413914-17413933 | Msa0538250:intron | 25.0% |
| ! | AATAATAATGAGAATGATGG+AGG | - | chr4_1:17414016-17414035 | Msa0538250:CDS | 25.0% |
| !!! | AGTTACTTGGTGAAATATTT+TGG | - | chr4_1:17414115-17414134 | Msa0538250:CDS | 25.0% |
| !!! | GTTACTTGGTGAAATATTTT+GGG | - | chr4_1:17414116-17414135 | Msa0538250:CDS | 25.0% |
| ! | TCTATCTACTAATAAGTCAA+AGG | - | chr4_1:17414262-17414281 | Msa0538250:CDS | 25.0% |
| ! | GAAAAATATAGTAAGAGTGA+AGG | + | chr4_1:17413532-17413551 | None:intergenic | 25.0% |
| ! | TTAGGATTAATTAGTTGCTT+CGG | - | chr4_1:17413807-17413826 | Msa0538250:intron | 25.0% |
| !!! | TGCTTCGGTTATTTATTTTT+TGG | - | chr4_1:17413822-17413841 | Msa0538250:intron | 25.0% |
| ! | TTGGTTATATTTACAGCATT+AGG | - | chr4_1:17413913-17413932 | Msa0538250:intron | 25.0% |
| ! | TGGTTATATTTACAGCATTA+GGG | - | chr4_1:17413914-17413933 | Msa0538250:intron | 25.0% |
| ! | AATAATAATGAGAATGATGG+AGG | - | chr4_1:17414016-17414035 | Msa0538250:CDS | 25.0% |
| !!! | AGTTACTTGGTGAAATATTT+TGG | - | chr4_1:17414115-17414134 | Msa0538250:CDS | 25.0% |
| !!! | GTTACTTGGTGAAATATTTT+GGG | - | chr4_1:17414116-17414135 | Msa0538250:CDS | 25.0% |
| ! | TCTATCTACTAATAAGTCAA+AGG | - | chr4_1:17414262-17414281 | Msa0538250:CDS | 25.0% |
| TTAAGAAACGCTGTATAAAG+AGG | - | chr4_1:17413563-17413582 | Msa0538250:intron | 30.0% | |
| GAGAAGTTTCCATATAACTT+TGG | + | chr4_1:17413961-17413980 | None:intergenic | 30.0% | |
| !!! | GTGTTGTTTTATGAGTTACT+TGG | - | chr4_1:17414102-17414121 | Msa0538250:CDS | 30.0% |
| !!! | AAATATTTTGGGTTTGTACC+TGG | - | chr4_1:17414127-17414146 | Msa0538250:CDS | 30.0% |
| ATAAGAGTAATGACATAACC+AGG | + | chr4_1:17414148-17414167 | None:intergenic | 30.0% | |
| TTAAGAAACGCTGTATAAAG+AGG | - | chr4_1:17413563-17413582 | Msa0538250:intron | 30.0% | |
| GAGAAGTTTCCATATAACTT+TGG | + | chr4_1:17413961-17413980 | None:intergenic | 30.0% | |
| !!! | GTGTTGTTTTATGAGTTACT+TGG | - | chr4_1:17414102-17414121 | Msa0538250:CDS | 30.0% |
| !!! | AAATATTTTGGGTTTGTACC+TGG | - | chr4_1:17414127-17414146 | Msa0538250:CDS | 30.0% |
| ATAAGAGTAATGACATAACC+AGG | + | chr4_1:17414148-17414167 | None:intergenic | 30.0% | |
| AGTCTGGTATAAGAAGGATA+GGG | + | chr4_1:17414058-17414077 | None:intergenic | 35.0% | |
| CAATACAGTCTGGTATAAGA+AGG | + | chr4_1:17414064-17414083 | None:intergenic | 35.0% | |
| CTTCTTATACCAGACTGTAT+TGG | - | chr4_1:17414062-17414081 | Msa0538250:CDS | 35.0% | |
| TAAGACAATCCAATACAGTC+TGG | + | chr4_1:17414074-17414093 | None:intergenic | 35.0% | |
| AGTCTGGTATAAGAAGGATA+GGG | + | chr4_1:17414058-17414077 | None:intergenic | 35.0% | |
| CAATACAGTCTGGTATAAGA+AGG | + | chr4_1:17414064-17414083 | None:intergenic | 35.0% | |
| CTTCTTATACCAGACTGTAT+TGG | - | chr4_1:17414062-17414081 | Msa0538250:CDS | 35.0% | |
| TAAGACAATCCAATACAGTC+TGG | + | chr4_1:17414074-17414093 | None:intergenic | 35.0% | |
| ATCTCATGTGGACAAGTAAC+TGG | - | chr4_1:17413243-17413262 | Msa0538250:three_prime_UTR | 40.0% | |
| !! | CCTCTAAGATATGCAATGCA+TGG | + | chr4_1:17413279-17413298 | None:intergenic | 40.0% |
| CCATGCATTGCATATCTTAG+AGG | - | chr4_1:17413276-17413295 | Msa0538250:three_prime_UTR | 40.0% | |
| TGCATTGCATATCTTAGAGG+TGG | - | chr4_1:17413279-17413298 | Msa0538250:three_prime_UTR | 40.0% | |
| !! | AACTGCTTGAAAAGTGCTTC+TGG | - | chr4_1:17413387-17413406 | Msa0538250:three_prime_UTR | 40.0% |
| TGTTAACACCACATTTGCCA+GGG | + | chr4_1:17413452-17413471 | None:intergenic | 40.0% | |
| ATGTTAACACCACATTTGCC+AGG | + | chr4_1:17413453-17413472 | None:intergenic | 40.0% | |
| AAGAACTTACGTAGCACAGT+TGG | + | chr4_1:17413499-17413518 | None:intergenic | 40.0% | |
| AACGCTGTATAAAGAGGTCT+AGG | - | chr4_1:17413569-17413588 | Msa0538250:intron | 40.0% | |
| TATTCAAGTCGCTCGAAAAG+TGG | - | chr4_1:17413861-17413880 | Msa0538250:intron | 40.0% | |
| GTTGCAGCTCCAAAGTTATA+TGG | - | chr4_1:17413949-17413968 | Msa0538250:intron | 40.0% | |
| CAGTCTGGTATAAGAAGGAT+AGG | + | chr4_1:17414059-17414078 | None:intergenic | 40.0% | |
| ATCTCATGTGGACAAGTAAC+TGG | - | chr4_1:17413243-17413262 | Msa0538250:three_prime_UTR | 40.0% | |
| !! | CCTCTAAGATATGCAATGCA+TGG | + | chr4_1:17413279-17413298 | None:intergenic | 40.0% |
| CCATGCATTGCATATCTTAG+AGG | - | chr4_1:17413276-17413295 | Msa0538250:three_prime_UTR | 40.0% | |
| TGCATTGCATATCTTAGAGG+TGG | - | chr4_1:17413279-17413298 | Msa0538250:three_prime_UTR | 40.0% | |
| !! | AACTGCTTGAAAAGTGCTTC+TGG | - | chr4_1:17413387-17413406 | Msa0538250:three_prime_UTR | 40.0% |
| TGTTAACACCACATTTGCCA+GGG | + | chr4_1:17413452-17413471 | None:intergenic | 40.0% | |
| ATGTTAACACCACATTTGCC+AGG | + | chr4_1:17413453-17413472 | None:intergenic | 40.0% | |
| AAGAACTTACGTAGCACAGT+TGG | + | chr4_1:17413499-17413518 | None:intergenic | 40.0% | |
| AACGCTGTATAAAGAGGTCT+AGG | - | chr4_1:17413569-17413588 | Msa0538250:intron | 40.0% | |
| TATTCAAGTCGCTCGAAAAG+TGG | - | chr4_1:17413861-17413880 | Msa0538250:intron | 40.0% | |
| GTTGCAGCTCCAAAGTTATA+TGG | - | chr4_1:17413949-17413968 | Msa0538250:intron | 40.0% | |
| CAGTCTGGTATAAGAAGGAT+AGG | + | chr4_1:17414059-17414078 | None:intergenic | 40.0% | |
| GTGCATGATTGTTGCACCTA+TGG | - | chr4_1:17413209-17413228 | Msa0538250:three_prime_UTR | 45.0% | |
| !! | AGTGCTTCTGGTGCTATTTC+TGG | - | chr4_1:17413399-17413418 | Msa0538250:three_prime_UTR | 45.0% |
| !! | GTGGAGGTACTGATCTTGTA+AGG | + | chr4_1:17413477-17413496 | None:intergenic | 45.0% |
| AACTTACGTAGCACAGTTGG+TGG | + | chr4_1:17413496-17413515 | None:intergenic | 45.0% | |
| ATGGAGGCTCATCTTATGTG+TGG | - | chr4_1:17414032-17414051 | Msa0538250:CDS | 45.0% | |
| GTGCATGATTGTTGCACCTA+TGG | - | chr4_1:17413209-17413228 | Msa0538250:three_prime_UTR | 45.0% | |
| !! | AGTGCTTCTGGTGCTATTTC+TGG | - | chr4_1:17413399-17413418 | Msa0538250:three_prime_UTR | 45.0% |
| !! | GTGGAGGTACTGATCTTGTA+AGG | + | chr4_1:17413477-17413496 | None:intergenic | 45.0% |
| AACTTACGTAGCACAGTTGG+TGG | + | chr4_1:17413496-17413515 | None:intergenic | 45.0% | |
| ATGGAGGCTCATCTTATGTG+TGG | - | chr4_1:17414032-17414051 | Msa0538250:CDS | 45.0% | |
| !!! | AAAAATTATAATATTTTTAG+AGG | - | chr4_1:17413713-17413732 | Msa0538250:intron | 5.0% |
| !! | CTTTATAATAAAAAAAATTT+AGG | - | chr4_1:17413789-17413808 | Msa0538250:intron | 5.0% |
| !!! | AAAAATTATAATATTTTTAG+AGG | - | chr4_1:17413713-17413732 | Msa0538250:intron | 5.0% |
| !! | CTTTATAATAAAAAAAATTT+AGG | - | chr4_1:17413789-17413808 | Msa0538250:intron | 5.0% |
| GAGATTGCAGCATCTGCCAT+AGG | + | chr4_1:17413228-17413247 | None:intergenic | 50.0% | |
| GCAGATGCTGCAATCTCATG+TGG | - | chr4_1:17413231-17413250 | Msa0538250:three_prime_UTR | 50.0% | |
| GCATATCTTAGAGGTGGTGC+TGG | - | chr4_1:17413285-17413304 | Msa0538250:three_prime_UTR | 50.0% | |
| TTGAATCCTAGCACAGCTGC+TGG | - | chr4_1:17413423-17413442 | Msa0538250:three_prime_UTR | 50.0% | |
| !! | TTACGTAGCACAGTTGGTGG+AGG | + | chr4_1:17413493-17413512 | None:intergenic | 50.0% |
| GAGATTGCAGCATCTGCCAT+AGG | + | chr4_1:17413228-17413247 | None:intergenic | 50.0% | |
| GCAGATGCTGCAATCTCATG+TGG | - | chr4_1:17413231-17413250 | Msa0538250:three_prime_UTR | 50.0% | |
| GCATATCTTAGAGGTGGTGC+TGG | - | chr4_1:17413285-17413304 | Msa0538250:three_prime_UTR | 50.0% | |
| TTGAATCCTAGCACAGCTGC+TGG | - | chr4_1:17413423-17413442 | Msa0538250:three_prime_UTR | 50.0% | |
| !! | TTACGTAGCACAGTTGGTGG+AGG | + | chr4_1:17413493-17413512 | None:intergenic | 50.0% |
| TTCACTCCAGCACAGCATGC+TGG | + | chr4_1:17413318-17413337 | None:intergenic | 55.0% | |
| AGCAGTTGCAAGCAGCCTGA+CGG | + | chr4_1:17413374-17413393 | None:intergenic | 55.0% | |
| TTCACTCCAGCACAGCATGC+TGG | + | chr4_1:17413318-17413337 | None:intergenic | 55.0% | |
| AGCAGTTGCAAGCAGCCTGA+CGG | + | chr4_1:17413374-17413393 | None:intergenic | 55.0% | |
| CCAGCACAGCATGCTGGAGA+TGG | + | chr4_1:17413312-17413331 | None:intergenic | 60.0% | |
| CCATCTCCAGCATGCTGTGC+TGG | - | chr4_1:17413309-17413328 | Msa0538250:three_prime_UTR | 60.0% | |
| TTGCAAGCAGCCTGACGGTC+AGG | + | chr4_1:17413369-17413388 | None:intergenic | 60.0% | |
| ! | GCTGGTCTCCCTGGCAAATG+TGG | - | chr4_1:17413441-17413460 | Msa0538250:three_prime_UTR | 60.0% |
| CCAGCACAGCATGCTGGAGA+TGG | + | chr4_1:17413312-17413331 | None:intergenic | 60.0% | |
| CCATCTCCAGCATGCTGTGC+TGG | - | chr4_1:17413309-17413328 | Msa0538250:three_prime_UTR | 60.0% | |
| TTGCAAGCAGCCTGACGGTC+AGG | + | chr4_1:17413369-17413388 | None:intergenic | 60.0% | |
| ! | GCTGGTCTCCCTGGCAAATG+TGG | - | chr4_1:17413441-17413460 | Msa0538250:three_prime_UTR | 60.0% |
| !! | ACGGTCAGGTGTGGTGGTGG+CGG | + | chr4_1:17413355-17413374 | None:intergenic | 65.0% |
| CTGACGGTCAGGTGTGGTGG+TGG | + | chr4_1:17413358-17413377 | None:intergenic | 65.0% | |
| CACCACCACACCTGACCGTC+AGG | - | chr4_1:17413356-17413375 | Msa0538250:three_prime_UTR | 65.0% | |
| AGCCTGACGGTCAGGTGTGG+TGG | + | chr4_1:17413361-17413380 | None:intergenic | 65.0% | |
| AGCAGCCTGACGGTCAGGTG+TGG | + | chr4_1:17413364-17413383 | None:intergenic | 65.0% | |
| GGGAGACCAGCAGCTGTGCT+AGG | + | chr4_1:17413432-17413451 | None:intergenic | 65.0% | |
| ! | AGCACAGCTGCTGGTCTCCC+TGG | - | chr4_1:17413432-17413451 | Msa0538250:three_prime_UTR | 65.0% |
| !! | ACGGTCAGGTGTGGTGGTGG+CGG | + | chr4_1:17413355-17413374 | None:intergenic | 65.0% |
| CTGACGGTCAGGTGTGGTGG+TGG | + | chr4_1:17413358-17413377 | None:intergenic | 65.0% | |
| CACCACCACACCTGACCGTC+AGG | - | chr4_1:17413356-17413375 | Msa0538250:three_prime_UTR | 65.0% | |
| AGCCTGACGGTCAGGTGTGG+TGG | + | chr4_1:17413361-17413380 | None:intergenic | 65.0% | |
| AGCAGCCTGACGGTCAGGTG+TGG | + | chr4_1:17413364-17413383 | None:intergenic | 65.0% | |
| GGGAGACCAGCAGCTGTGCT+AGG | + | chr4_1:17413432-17413451 | None:intergenic | 65.0% | |
| ! | AGCACAGCTGCTGGTCTCCC+TGG | - | chr4_1:17413432-17413451 | Msa0538250:three_prime_UTR | 65.0% |
| !! | GTCAGGTGTGGTGGTGGCGG+CGG | + | chr4_1:17413352-17413371 | None:intergenic | 70.0% |
| !! | GTCAGGTGTGGTGGTGGCGG+CGG | + | chr4_1:17413352-17413371 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 17413171 | 17414327 | 17413171 | ID=Msa0538250;Name=Msa0538250 |
| chr4_1 | mRNA | 17413171 | 17414327 | 17413171 | ID=Msa0538250-mRNA-1;Parent=Msa0538250;Name=Msa0538250-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0|0.5|1|1|1|2|322|130 |
| chr4_1 | exon | 17413171 | 17413569 | 17413171 | ID=Msa0538250-mRNA-1:exon:5197;Parent=Msa0538250-mRNA-1 |
| chr4_1 | exon | 17414012 | 17414327 | 17414012 | ID=Msa0538250-mRNA-1:exon:5196;Parent=Msa0538250-mRNA-1 |
| chr4_1 | CDS | 17414012 | 17414327 | 17414012 | ID=Msa0538250-mRNA-1:cds;Parent=Msa0538250-mRNA-1 |
| chr4_1 | CDS | 17413493 | 17413569 | 17413493 | ID=Msa0538250-mRNA-1:cds;Parent=Msa0538250-mRNA-1 |
| chr4_1 | three_prime_UTR | 17413171 | 17413492 | 17413171 | ID=Msa0538250-mRNA-1:three_prime_utr;Parent=Msa0538250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
