AlfalfaGEDB | Msa1330240

M. sativa cultivar zhongmu-4 / Msa1330240

KEGG: -
GO: GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006631 GO:0008126 GO:0008150 GO:0008152 GO:0009987 GO:0016787 GO:0016788 GO:0019752 GO:0032787 GO:0034338 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0052689 GO:0071704
PFAM: PF00657.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1330240	XP_003608902.2	96.579	380	13	0	1	380	1	380	0.0	769

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1330240	sp\|Q9STM6\|GDL57_ARATH	61.780	382	135	4	1	376	1	377	2.50e-172	488

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1330240	G7JMN9	96.579	380	13	0	1	380	1	380	0.0	769

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003470	Msa1330240	0.819301	1.248072e-52	-8.615850e-47
Msa0004350	Msa1330240	0.829653	4.563186e-55	-8.615850e-47
Msa0007450	Msa1330240	0.825864	3.715541e-54	-8.615850e-47
Msa0008330	Msa1330240	0.866449	2.827590e-65	-8.615850e-47
Msa0009210	Msa1330240	0.819494	1.127882e-52	-8.615850e-47
Msa0010460	Msa1330240	-0.810059	1.391120e-50	-8.615850e-47
Msa0012460	Msa1330240	0.815947	7.119579e-52	-8.615850e-47
Msa0015370	Msa1330240	0.805758	1.143375e-49	-8.615850e-47
Msa0017120	Msa1330240	0.846105	2.676500e-59	-8.615850e-47
Msa0018220	Msa1330240	0.853509	2.280699e-61	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1330240	MtrunA17_Chr4g0057991	96.579	380	13	0	1	380	1	380	0.0	769
Msa1330240	MtrunA17_Chr2g0283531	43.895	344	180	9	35	369	27	366	6.15e-83	257
Msa1330240	MtrunA17_Chr2g0283481	38.133	375	203	12	10	372	28	385	3.37e-73	233
Msa1330240	MtrunA17_Chr3g0104821	36.994	346	200	8	34	367	39	378	1.55e-72	231
Msa1330240	MtrunA17_Chr2g0283501	38.292	363	203	11	18	371	19	369	5.37e-71	226
Msa1330240	MtrunA17_Chr3g0112821	38.261	345	185	12	36	367	27	356	4.58e-69	221
Msa1330240	MtrunA17_Chr2g0283511	38.393	336	190	9	44	367	36	366	9.00e-68	219
Msa1330240	MtrunA17_Chr3g0093031	37.822	349	186	13	36	367	27	361	9.71e-68	218
Msa1330240	MtrunA17_Chr3g0112691	36.550	342	198	9	36	367	27	359	9.18e-66	213
Msa1330240	MtrunA17_Chr2g0301581	35.447	347	187	10	36	369	31	353	3.33e-65	211

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1330240	AT3G48460.1	61.780	382	135	4	1	376	1	377	2.54e-173	488
Msa1330240	AT2G27360.1	38.005	371	214	8	10	371	9	372	6.23e-81	253
Msa1330240	AT1G28580.1	38.275	371	212	8	10	371	13	375	8.63e-81	253
Msa1330240	AT1G28650.1	36.675	379	228	8	1	371	1	375	4.27e-80	251
Msa1330240	AT1G28590.1	37.931	377	217	9	4	371	6	374	4.23e-78	246
Msa1330240	AT1G28600.1	37.067	375	219	9	5	370	1	367	2.62e-76	241
Msa1330240	AT1G28660.1	37.057	367	219	9	15	371	9	373	4.70e-75	238
Msa1330240	AT1G28570.1	37.741	363	214	9	18	371	13	372	6.33e-75	238
Msa1330240	AT1G28670.1	37.228	368	218	7	15	371	9	374	7.04e-75	237
Msa1330240	AT1G28640.1	36.631	374	223	8	15	377	9	379	1.94e-74	236

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Find 95 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATCAAATGATACTTT+TGG	0.334241	8_4:+49404956	Msa1330240:CDS
AAAATAGAGGGCTAAAATGA+GGG	0.581309	8_4:-49406305	None:intergenic
AACAACCTTATACATAGCTT+CGG	0.507341	8_4:-49406074	None:intergenic
AACACAGTAAAGTTGTAAGG+AGG	0.674046	8_4:-49405974	None:intergenic
AAGCCAAATTACAAGAATTC+AGG	0.428938	8_4:+49405828	Msa1330240:CDS
AAGTAAGGAGGATATGTATA+TGG	0.398377	8_4:-49404669	None:intergenic
AAGTCGTCTCTGTCATCTGG+AGG	0.624671	8_4:-49405752	None:intergenic
AATAAGTACTTGGAGAGCCA+AGG	0.559798	8_4:+49405091	Msa1330240:CDS
AATCAACTCCTTGACAACCT+TGG	0.512025	8_4:-49405108	None:intergenic
AATGATTATGCTTACACTCT+TGG	0.315837	8_4:+49405184	Msa1330240:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTAAGGAGGATATGTATA+TGG	-	chr8_4:49404672-49404691	None:intergenic	30.0%
AGAAGCTGTTGAAAAAAGTA+AGG	-	chr8_4:49404687-49404706	None:intergenic	30.0%
TTCAAGAAAATTTACGCCTT+CGG	+	chr8_4:49404743-49404762	Msa1330240:CDS	30.0%
TTGAAGAAAGTTGTTCCATA+TGG	-	chr8_4:49404842-49404861	None:intergenic	30.0%
ACTGTGGTTTAATAAGTACT+TGG	+	chr8_4:49405081-49405100	Msa1330240:CDS	30.0%
AATGATTATGCTTACACTCT+TGG	+	chr8_4:49405184-49405203	Msa1330240:CDS	30.0%
TGAAAAAATTCTCTAGACCA+AGG	-	chr8_4:49405356-49405375	None:intergenic	30.0%
ATTAGTAAGGTTTACCAAGT+AGG	+	chr8_4:49405433-49405452	Msa1330240:intron	30.0%
ATGTCAATTTCTATCTCATG+GGG	-	chr8_4:49405514-49405533	None:intergenic	30.0%
CATGTCAATTTCTATCTCAT+GGG	-	chr8_4:49405515-49405534	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	49404599	49406756	49404599	ID=Msa1330240;Name=Msa1330240
chr8_4	mRNA	49404599	49406756	49404599	ID=Msa1330240-mRNA-1;Parent=Msa1330240;Name=Msa1330240-mRNA-1;_AED=0.00;_eAED=0.00;_QI=36\|1\|1\|1\|1\|1\|2\|582\|380
chr8_4	exon	49404599	49405270	49404599	ID=Msa1330240-mRNA-1:exon:14268;Parent=Msa1330240-mRNA-1
chr8_4	exon	49405668	49406756	49405668	ID=Msa1330240-mRNA-1:exon:14269;Parent=Msa1330240-mRNA-1
chr8_4	five_prime_UTR	49404599	49404634	49404599	ID=Msa1330240-mRNA-1:five_prime_utr;Parent=Msa1330240-mRNA-1
chr8_4	CDS	49404635	49405270	49404635	ID=Msa1330240-mRNA-1:cds;Parent=Msa1330240-mRNA-1
chr8_4	CDS	49405668	49406174	49405668	ID=Msa1330240-mRNA-1:cds;Parent=Msa1330240-mRNA-1
chr8_4	three_prime_UTR	49406175	49406756	49406175	ID=Msa1330240-mRNA-1:three_prime_utr;Parent=Msa1330240-mRNA-1

Gene Sequence

>Msa1330240

ATGGCTCCTTCTATGGCAACAATAACTCTCATTACCATATACATATCCTCCTTACTTTTTTCAACAGCTTCTTCAGCTACATCAACTACAGAACAACTTTCAAGACCTTTCAAGAAAATTTACGCCTTCGGAGACTCTTTCACAGACACAGGCAACACACACAACGCTGAAGGTCCAAGTGGTTTTGGCCATGTATCAAACTCACCATATGGAACAACTTTCTTCAACCATTCCACAAACAGATACTCTGATGGAAGACTTGTTATTGACTTTGTCACAGAATCACTTTCTTTGCCTTATCTTCCTCCTTATCGTCACATCAAAAGATCAAATGATACTTTTGGTGTTAACTTTGCTGTTGCTGGTTCAACAGCTATAAACCATGAATTCTTTGTTAGGAATAATCTTTCTCTTGACATCACTCCTCAGTCTATTCAAACTCAGATACTGTGGTTTAATAAGTACTTGGAGAGCCAAGGTTGTCAAGGAGTTGATTCAAATTGTAAAGATTTTGATGAGACTCTTTTTTGGTTTGGTGAAATTGGTGTTAATGATTATGCTTACACTCTTGGATCTACAGTCTCAGAAGATACCATAAGGAAGCTTGCAATGTCCAGTGTCTCAGGAGCTTTACAGTCATTGCTTGAGAAGGGTGCCAAGTACCTAGTTGTGCAAGGTCATCCACCAACAGGGTGCCTTACACTGACAATGTATTTAGCTCCTCCAGATGACAGAGACGACTTAGGATGTGTGAAAAGTGCTAACGACCTAAGCAACAATCACAACCTTATGCTGCAAGCCAAATTACAAGAATTCAGGAAACAGTACCCACATGCAGTCATAGTTTATGCTGATTACTTCAATGCATACCGTACTGTGATGAAGAATCCAAGCAAGTATGGATTCAAAGATATGTTCAGTGTCTGCTGTGGATCAGGAGAACCTCCTTACAACTTTACTGTGTTTGCTACTTGTGGTACACCTAATGCTACTGTCTGCACTAGCCCTTCTCAGTATATTAATTGGGATGGTGTTCATCTTACCGAAGCTATGTATAAGGTTGTTTCTAATATGTTTCTTCAAGGAAATTTCAGCCAACCTCCATTTGATTTTTTGTTGGAAAACAAAGAGAGACATGGCTGA

Protein sequence

>Msa1330240

MAPSMATITLITIYISSLLFSTASSATSTTEQLSRPFKKIYAFGDSFTDTGNTHNAEGPSGFGHVSNSPYGTTFFNHSTNRYSDGRLVIDFVTESLSLPYLPPYRHIKRSNDTFGVNFAVAGSTAINHEFFVRNNLSLDITPQSIQTQILWFNKYLESQGCQGVDSNCKDFDETLFWFGEIGVNDYAYTLGSTVSEDTIRKLAMSSVSGALQSLLEKGAKYLVVQGHPPTGCLTLTMYLAPPDDRDDLGCVKSANDLSNNHNLMLQAKLQEFRKQYPHAVIVYADYFNAYRTVMKNPSKYGFKDMFSVCCGSGEPPYNFTVFATCGTPNATVCTSPSQYINWDGVHLTEAMYKVVSNMFLQGNFSQPPFDFLLENKERHG*