Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558820 | XP_003629721.2 | 82.857 | 525 | 35 | 3 | 4 | 473 | 1 | 525 | 0.0 | 879 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558820 | sp|Q8W496|PTC52_ARATH | 49.911 | 559 | 191 | 10 | 1 | 473 | 1 | 556 | 0.0 | 541 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558820 | A0A396GSW2 | 82.857 | 525 | 35 | 3 | 4 | 473 | 1 | 525 | 0.0 | 879 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003490 | Msa0558820 | 0.810065 | 1.387072e-50 | -8.615850e-47 |
| Msa0004350 | Msa0558820 | 0.819869 | 9.260933e-53 | -8.615850e-47 |
| Msa0018220 | Msa0558820 | 0.805101 | 1.570774e-49 | -8.615850e-47 |
| Msa0046670 | Msa0558820 | 0.801542 | 8.571451e-49 | -8.615850e-47 |
| Msa0052460 | Msa0558820 | 0.836128 | 1.121621e-56 | -8.615850e-47 |
| Msa0094060 | Msa0558820 | 0.846413 | 2.206611e-59 | -8.615850e-47 |
| Msa0097050 | Msa0558820 | 0.803047 | 4.199916e-49 | -8.615850e-47 |
| Msa0102800 | Msa0558820 | 0.802662 | 5.044237e-49 | -8.615850e-47 |
| Msa0105210 | Msa0558820 | 0.805937 | 1.048740e-49 | -8.615850e-47 |
| Msa0130120 | Msa0558820 | 0.803896 | 2.800583e-49 | -8.615850e-47 |
| Msa0184070 | Msa0558820 | 0.812892 | 3.373529e-51 | -8.615850e-47 |
| Msa0207180 | Msa0558820 | 0.832190 | 1.088904e-55 | -8.615850e-47 |
| Msa0219660 | Msa0558820 | 0.831946 | 1.251314e-55 | -8.615850e-47 |
| Msa0220760 | Msa0558820 | 0.801060 | 1.075784e-48 | -8.615850e-47 |
| Msa0371610 | Msa0558820 | 0.802777 | 4.775149e-49 | -8.615850e-47 |
| Msa0378340 | Msa0558820 | 0.809328 | 1.997850e-50 | -8.615850e-47 |
| Msa0382290 | Msa0558820 | 0.828207 | 1.022199e-54 | -8.615850e-47 |
| Msa0392410 | Msa0558820 | 0.819748 | 9.870084e-53 | -8.615850e-47 |
| Msa0392450 | Msa0558820 | 0.815164 | 1.063527e-51 | -8.615850e-47 |
| Msa0392480 | Msa0558820 | 0.815410 | 9.379907e-52 | -8.615850e-47 |
| Msa0404870 | Msa0558820 | 0.810763 | 9.807463e-51 | -8.615850e-47 |
| Msa0418480 | Msa0558820 | 0.865836 | 4.424234e-65 | -8.615850e-47 |
| Msa0420070 | Msa0558820 | 0.815272 | 1.006524e-51 | -8.615850e-47 |
| Msa0420080 | Msa0558820 | 0.806773 | 6.989950e-50 | -8.615850e-47 |
| Msa0427690 | Msa0558820 | 0.806972 | 6.343833e-50 | -8.615850e-47 |
| Msa0431800 | Msa0558820 | 0.818413 | 1.985944e-52 | -8.615850e-47 |
| Msa0450780 | Msa0558820 | 0.813533 | 2.439637e-51 | -8.615850e-47 |
| Msa0450860 | Msa0558820 | 0.801454 | 8.934923e-49 | -8.615850e-47 |
| Msa0463580 | Msa0558820 | 0.803245 | 3.821767e-49 | -8.615850e-47 |
| Msa0465860 | Msa0558820 | 0.873405 | 1.508604e-67 | -8.615850e-47 |
| Msa0482580 | Msa0558820 | 0.809321 | 2.004749e-50 | -8.615850e-47 |
| Msa0260960 | Msa0558820 | 0.865981 | 3.980361e-65 | -8.615850e-47 |
| Msa0260970 | Msa0558820 | 0.840672 | 7.553021e-58 | -8.615850e-47 |
| Msa0265780 | Msa0558820 | 0.846864 | 1.661347e-59 | -8.615850e-47 |
| Msa0270610 | Msa0558820 | 0.811600 | 6.454606e-51 | -8.615850e-47 |
| Msa0274780 | Msa0558820 | 0.806793 | 6.921748e-50 | -8.615850e-47 |
| Msa0290950 | Msa0558820 | 0.859848 | 3.113369e-63 | -8.615850e-47 |
| Msa0290970 | Msa0558820 | 0.852394 | 4.751493e-61 | -8.615850e-47 |
| Msa0301800 | Msa0558820 | 0.806054 | 9.910959e-50 | -8.615850e-47 |
| Msa0303780 | Msa0558820 | 0.836019 | 1.196030e-56 | -8.615850e-47 |
| Msa0315480 | Msa0558820 | 0.844995 | 5.352098e-59 | -8.615850e-47 |
| Msa0358230 | Msa0558820 | 0.852186 | 5.446101e-61 | -8.615850e-47 |
| Msa0358710 | Msa0558820 | 0.803649 | 3.151859e-49 | -8.615850e-47 |
| Msa0487560 | Msa0558820 | 0.827033 | 1.956022e-54 | -8.615850e-47 |
| Msa0487620 | Msa0558820 | 0.828231 | 1.008466e-54 | -8.615850e-47 |
| Msa0510230 | Msa0558820 | 0.875275 | 3.502325e-68 | -8.615850e-47 |
| Msa0518520 | Msa0558820 | 0.808219 | 3.448554e-50 | -8.615850e-47 |
| Msa0520730 | Msa0558820 | 0.833590 | 4.888209e-56 | -8.615850e-47 |
| Msa0538250 | Msa0558820 | 0.808203 | 3.475128e-50 | -8.615850e-47 |
| Msa0543850 | Msa0558820 | 0.831695 | 1.443180e-55 | -8.615850e-47 |
| Msa0547050 | Msa0558820 | 0.812001 | 5.280134e-51 | -8.615850e-47 |
| Msa0548720 | Msa0558820 | 0.808639 | 2.805719e-50 | -8.615850e-47 |
| Msa0553510 | Msa0558820 | 0.822700 | 2.058774e-53 | -8.615850e-47 |
| Msa0558820 | Msa0558850 | 0.820399 | 7.001438e-53 | -8.615850e-47 |
| Msa0558820 | Msa0575450 | 0.805900 | 1.067604e-49 | -8.615850e-47 |
| Msa0558820 | Msa0581340 | 0.821188 | 4.610790e-53 | -8.615850e-47 |
| Msa0558820 | Msa0600390 | 0.815910 | 7.257568e-52 | -8.615850e-47 |
| Msa0558820 | Msa0601780 | 0.818581 | 1.819538e-52 | -8.615850e-47 |
| Msa0558820 | Msa0603680 | 0.856949 | 2.276155e-62 | -8.615850e-47 |
| Msa0558820 | Msa0621770 | 0.808012 | 3.816907e-50 | -8.615850e-47 |
| Msa0558820 | Msa0640880 | 0.813271 | 2.785641e-51 | -8.615850e-47 |
| Msa0558820 | Msa0656590 | 0.822435 | 2.372510e-53 | -8.615850e-47 |
| Msa0558820 | Msa0656950 | 0.809035 | 2.308950e-50 | -8.615850e-47 |
| Msa0558820 | Msa0678890 | 0.833339 | 5.645867e-56 | -8.615850e-47 |
| Msa0558820 | Msa0691160 | 0.800640 | 1.311021e-48 | -8.615850e-47 |
| Msa0558820 | Msa0700610 | 0.802786 | 4.755850e-49 | -8.615850e-47 |
| Msa0558820 | Msa0700850 | 0.869997 | 2.034824e-66 | -8.615850e-47 |
| Msa0558820 | Msa0700910 | 0.913233 | 7.804343e-84 | -8.615850e-47 |
| Msa0558820 | Msa0706530 | 0.805299 | 1.427582e-49 | -8.615850e-47 |
| Msa0558820 | Msa0722940 | 0.826824 | 2.194282e-54 | -8.615850e-47 |
| Msa0558820 | Msa0723150 | 0.831801 | 1.358267e-55 | -8.615850e-47 |
| Msa0558820 | Msa0733570 | 0.812270 | 4.613260e-51 | -8.615850e-47 |
| Msa0558820 | Msa0769800 | 0.808892 | 2.477240e-50 | -8.615850e-47 |
| Msa0558820 | Msa0774680 | 0.812218 | 4.735281e-51 | -8.615850e-47 |
| Msa0558820 | Msa0815340 | 0.837667 | 4.541587e-57 | -8.615850e-47 |
| Msa0558820 | Msa0830410 | 0.813466 | 2.524181e-51 | -8.615850e-47 |
| Msa0558820 | Msa0843290 | 0.812746 | 3.631189e-51 | -8.615850e-47 |
| Msa0558820 | Msa0855560 | 0.814545 | 1.459052e-51 | -8.615850e-47 |
| Msa0558820 | Msa0951460 | 0.816442 | 5.519628e-52 | -8.615850e-47 |
| Msa0558820 | Msa0951960 | 0.810784 | 9.704593e-51 | -8.615850e-47 |
| Msa0558820 | Msa1129920 | 0.808260 | 3.380127e-50 | -8.615850e-47 |
| Msa0558820 | Msa1147200 | 0.829893 | 3.988889e-55 | -8.615850e-47 |
| Msa0558820 | Msa1178470 | 0.816525 | 5.286798e-52 | -8.615850e-47 |
| Msa0558820 | Msa1200920 | 0.810482 | 1.127770e-50 | -8.615850e-47 |
| Msa0558820 | Msa1221260 | 0.822965 | 1.786259e-53 | -8.615850e-47 |
| Msa0558820 | Msa1232860 | 0.825426 | 4.716977e-54 | -8.615850e-47 |
| Msa0558820 | Msa1238480 | 0.811343 | 7.342886e-51 | -8.615850e-47 |
| Msa0558820 | Msa1254210 | 0.801426 | 9.055479e-49 | -8.615850e-47 |
| Msa0558820 | Msa1258810 | 0.831288 | 1.817743e-55 | -8.615850e-47 |
| Msa0558820 | Msa1262630 | 0.805748 | 1.149287e-49 | -8.615850e-47 |
| Msa0558820 | Msa1264230 | 0.807316 | 5.365866e-50 | -8.615850e-47 |
| Msa0558820 | Msa1275290 | 0.803998 | 2.666853e-49 | -8.615850e-47 |
| Msa0558820 | Msa1295010 | 0.816283 | 5.989477e-52 | -8.615850e-47 |
| Msa0558820 | Msa1302150 | 0.805845 | 1.096503e-49 | -8.615850e-47 |
| Msa0558820 | Msa1302920 | 0.807045 | 6.123432e-50 | -8.615850e-47 |
| Msa0558820 | Msa1313460 | 0.826744 | 2.292858e-54 | -8.615850e-47 |
| Msa0558820 | Msa1330240 | 0.837684 | 4.494373e-57 | -8.615850e-47 |
| Msa0558820 | Msa1337340 | 0.824958 | 6.086376e-54 | -8.615850e-47 |
| Msa0558820 | Msa1341340 | 0.813581 | 2.380633e-51 | -8.615850e-47 |
| Msa0558820 | Msa1350670 | 0.814133 | 1.798969e-51 | -8.615850e-47 |
| Msa0558820 | Msa1375400 | 0.806646 | 7.436403e-50 | -8.615850e-47 |
| Msa0558820 | Msa1379070 | 0.834144 | 3.551496e-56 | -8.615850e-47 |
| Msa0558820 | Msa1379090 | 0.831627 | 1.499608e-55 | -8.615850e-47 |
| Msa0558820 | Msa1421810 | 0.867425 | 1.381615e-65 | -8.615850e-47 |
| Msa0558820 | Msa1435050 | 0.842190 | 3.009035e-58 | -8.615850e-47 |
| Msa0558820 | Msa1437690 | 0.805838 | 1.100300e-49 | -8.615850e-47 |
| Msa0558820 | Msa1439680 | 0.818079 | 2.363883e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558820 | MtrunA17_Chr8g0378671 | 82.857 | 525 | 35 | 3 | 4 | 473 | 1 | 525 | 0.0 | 879 |
| Msa0558820 | MtrunA17_Chr8g0378721 | 78.748 | 527 | 54 | 5 | 4 | 473 | 1 | 526 | 0.0 | 833 |
| Msa0558820 | MtrunA17_Chr8g0378701 | 78.497 | 386 | 42 | 4 | 1 | 346 | 12 | 396 | 0.0 | 612 |
| Msa0558820 | MtrunA17_Chr8g0378691 | 75.172 | 145 | 19 | 1 | 346 | 473 | 9 | 153 | 9.47e-71 | 222 |
| Msa0558820 | MtrunA17_Chr4g0027961 | 34.518 | 394 | 188 | 15 | 68 | 410 | 89 | 463 | 3.99e-59 | 203 |
| Msa0558820 | MtrunA17_Chr3g0136771 | 27.049 | 366 | 210 | 10 | 69 | 401 | 96 | 437 | 1.39e-32 | 130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558820 | AT4G25650.1 | 51.769 | 537 | 191 | 9 | 1 | 473 | 1 | 533 | 0.0 | 548 |
| Msa0558820 | AT4G25650.2 | 49.911 | 559 | 191 | 10 | 1 | 473 | 1 | 556 | 0.0 | 541 |
| Msa0558820 | AT3G44880.1 | 30.561 | 481 | 245 | 17 | 61 | 473 | 74 | 533 | 2.51e-59 | 204 |
| Msa0558820 | AT2G24820.1 | 27.763 | 371 | 204 | 10 | 69 | 402 | 82 | 425 | 3.07e-34 | 135 |
Find 108 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATCATTTGCTAGCTTAA+TGG | 0.218538 | 4_1:+57825911 | Msa0558820:CDS |
| TTGAATCGAGGATCAGTATT+TGG | 0.226374 | 4_1:-57825840 | None:intergenic |
| TGGTGCTTTCCGAGAAATTT+TGG | 0.234178 | 4_1:+57826889 | Msa0558820:CDS |
| CCATCATTTGCTAGCTTAAT+GGG | 0.262213 | 4_1:+57825912 | Msa0558820:CDS |
| AGAATAATATCTTGTGGTTT+TGG | 0.262792 | 4_1:+57825817 | Msa0558820:CDS |
| ATCATATCAGTTGCTTCAAT+TGG | 0.287082 | 4_1:+57827974 | Msa0558820:CDS |
| AATGATGGATCATCAATTTC+TGG | 0.296431 | 4_1:-57825897 | None:intergenic |
| TGGATGCTGGTCAAGAAAAT+TGG | 0.301039 | 4_1:+57827239 | Msa0558820:CDS |
| CAATGGTTTCACTGCAAATC+AGG | 0.316257 | 4_1:+57826631 | Msa0558820:CDS |
| GGAAACAGAGATATTCCTTA+TGG | 0.335690 | 4_1:+57825933 | Msa0558820:CDS |
| TGGGAATTGATGTTGTTATA+TGG | 0.344667 | 4_1:+57825261 | Msa0558820:CDS |
| GAAGTGTTCCCACGGATTAA+TGG | 0.348211 | 4_1:-57825053 | None:intergenic |
| CTACTACTAGAATCTGTTAA+TGG | 0.354981 | 4_1:-57825110 | None:intergenic |
| ACAGAAGATGCAAGTTCATC+TGG | 0.362015 | 4_1:-57826707 | None:intergenic |
| ACCTCCTAGAGAACAGCTTA+TGG | 0.373079 | 4_1:+57827387 | Msa0558820:CDS |
| TGCCTTTGTTGGCACAAAAC+AGG | 0.379469 | 4_1:-57827269 | None:intergenic |
| AAGGCAGATGCTCTTGTGAT+TGG | 0.399532 | 4_1:+57827286 | Msa0558820:CDS |
| TGCATCTTCTGTTGAAACTA+AGG | 0.404424 | 4_1:+57826718 | Msa0558820:CDS |
| GTTAATCCATAGTGTGCATA+TGG | 0.414358 | 4_1:-57826462 | None:intergenic |
| CCCATTAAGCTAGCAAATGA+TGG | 0.416361 | 4_1:-57825912 | None:intergenic |
| ACAAGAGCATCTGCCTTTGT+TGG | 0.416937 | 4_1:-57827280 | None:intergenic |
| ATATTATTCTGCACAATGCT+TGG | 0.417838 | 4_1:-57825804 | None:intergenic |
| ATTGAAGAGTTAGATATCAA+TGG | 0.427054 | 4_1:+57826614 | Msa0558820:CDS |
| CATCAATTTCTGGTATGAAT+GGG | 0.432152 | 4_1:-57825887 | None:intergenic |
| TCATCAATTTCTGGTATGAA+TGG | 0.435029 | 4_1:-57825888 | None:intergenic |
| CTGGTAATAGTAGACTGATT+TGG | 0.436210 | 4_1:+57826869 | Msa0558820:CDS |
| TGAAGGAAGGATTGATCAAT+GGG | 0.437126 | 4_1:+57825352 | Msa0558820:CDS |
| ACCCACAGTCCAAAATTTCT+CGG | 0.439221 | 4_1:-57826898 | None:intergenic |
| AAGAAATTCTATAGTTGTGC+TGG | 0.439574 | 4_1:+57828039 | Msa0558820:CDS |
| CATGTTCCATATGCACACTA+TGG | 0.450961 | 4_1:+57826456 | Msa0558820:CDS |
| GATTGGAGAGGAAAATATAG+TGG | 0.451279 | 4_1:+57827349 | Msa0558820:CDS |
| ATTTGTATTCCTGTGAGTCC+TGG | 0.453411 | 4_1:+57826850 | Msa0558820:CDS |
| CAATATGTGATCTTGACAAA+AGG | 0.457440 | 4_1:+57825216 | Msa0558820:CDS |
| TCATATCAGTTGCTTCAATT+GGG | 0.473164 | 4_1:+57827975 | Msa0558820:CDS |
| TAATGCAGAAATCATCCGTT+CGG | 0.475564 | 4_1:+57826806 | Msa0558820:intron |
| GAAACAGAGATATTCCTTAT+GGG | 0.476962 | 4_1:+57825934 | Msa0558820:CDS |
| GATTGTTGCCGCAATAAAGC+AGG | 0.480412 | 4_1:+57827997 | Msa0558820:CDS |
| CTGAAGGAAGGATTGATCAA+TGG | 0.483984 | 4_1:+57825351 | Msa0558820:CDS |
| ATGCAGGTGATCAAGTTGAT+TGG | 0.490731 | 4_1:+57827332 | Msa0558820:CDS |
| AATAATGCTGATAGAGAAGG+AGG | 0.493895 | 4_1:+57826572 | Msa0558820:CDS |
| ATTGGAGAGGAAAATATAGT+GGG | 0.516950 | 4_1:+57827350 | Msa0558820:CDS |
| AAATTAAAATCATACCCATA+AGG | 0.517619 | 4_1:-57825948 | None:intergenic |
| TATAAATAAAAGATGCTTGG+TGG | 0.517953 | 4_1:-57826677 | None:intergenic |
| CTATATAAATAAAAGATGCT+TGG | 0.518931 | 4_1:-57826680 | None:intergenic |
| AATATGTGATCTTGACAAAA+GGG | 0.523473 | 4_1:+57825217 | Msa0558820:CDS |
| AAATGGTTAAAGAAGTATGC+AGG | 0.524010 | 4_1:+57827316 | Msa0558820:CDS |
| CTAGAATCTGTTAATGGAGA+AGG | 0.526969 | 4_1:-57825104 | None:intergenic |
| AGATCACATATTGGCATCAA+AGG | 0.530584 | 4_1:-57825206 | None:intergenic |
| GTTTCACTGCAAATCAGGGT+TGG | 0.531039 | 4_1:+57826636 | Msa0558820:CDS |
| TTTATATCTTCTCCATGTTG+AGG | 0.531042 | 4_1:+57826981 | Msa0558820:CDS |
| AATGGTTTCACTGCAAATCA+GGG | 0.531344 | 4_1:+57826632 | Msa0558820:CDS |
| ACCGCGATGGATTCTTCATG+TGG | 0.533829 | 4_1:+57826933 | Msa0558820:CDS |
| CTGTCCATAAGCTGTTCTCT+AGG | 0.535255 | 4_1:-57827391 | None:intergenic |
| TGGTCAAGAAAATTGGCATA+AGG | 0.536911 | 4_1:+57827246 | Msa0558820:CDS |
| CCCATCACTTTCTTAGCATG+AGG | 0.538954 | 4_1:-57825242 | None:intergenic |
| TGCCGCAATAAAGCAGGGAA+TGG | 0.543982 | 4_1:+57828003 | Msa0558820:CDS |
| AGATTAGCACCTTTGTCTGA+AGG | 0.545291 | 4_1:+57825335 | Msa0558820:CDS |
| CAAATCAGTCTACTATTACC+AGG | 0.545513 | 4_1:-57826868 | None:intergenic |
| GACAAAGGTGCTAATCTATG+AGG | 0.545842 | 4_1:-57825329 | None:intergenic |
| TAGCACCTTTGTCTGAAGGA+AGG | 0.548699 | 4_1:+57825339 | Msa0558820:CDS |
| CTACTATTACCAGGACTCAC+AGG | 0.551379 | 4_1:-57826859 | None:intergenic |
| AACCATTCCCTGCTTTATTG+CGG | 0.555375 | 4_1:-57828005 | None:intergenic |
| CATAGAAAATTTCTTCCGAA+CGG | 0.556398 | 4_1:-57826821 | None:intergenic |
| GGATTAACTCCAGACCCAAA+AGG | 0.558427 | 4_1:+57826477 | Msa0558820:CDS |
| CTAGAGAACAGCTTATGGAC+AGG | 0.559328 | 4_1:+57827392 | Msa0558820:CDS |
| ATCAATTTCTGGTATGAATG+GGG | 0.563979 | 4_1:-57825886 | None:intergenic |
| GATTCAAAGATATTATTACA+AGG | 0.564688 | 4_1:+57825856 | Msa0558820:CDS |
| ACCTCATGCTAAGAAAGTGA+TGG | 0.565040 | 4_1:+57825241 | Msa0558820:CDS |
| GTGAATAATGCTGATAGAGA+AGG | 0.565634 | 4_1:+57826569 | Msa0558820:intron |
| GAAGGATTGATCAATGGGGT+AGG | 0.572052 | 4_1:+57825357 | Msa0558820:CDS |
| CAACACTTCCATTAATCCGT+GGG | 0.573800 | 4_1:+57825045 | Msa0558820:CDS |
| TATATGGTGGGATAGAAATG+AGG | 0.577265 | 4_1:+57825277 | Msa0558820:CDS |
| TGTTCTCTAGGAGGTGTAGG+AGG | 0.578002 | 4_1:-57827379 | None:intergenic |
| AGCTGTTCTCTAGGAGGTGT+AGG | 0.578889 | 4_1:-57827382 | None:intergenic |
| TACTTTCATTCGCATTGTCG+CGG | 0.580974 | 4_1:+57828065 | Msa0558820:CDS |
| CCTCATGCTAAGAAAGTGAT+GGG | 0.581206 | 4_1:+57825242 | Msa0558820:CDS |
| TCAACACTTCCATTAATCCG+TGG | 0.582388 | 4_1:+57825044 | Msa0558820:CDS |
| AATTGATGTTGTTATATGGT+GGG | 0.583888 | 4_1:+57825265 | Msa0558820:CDS |
| CACTTGTGAGTTGAAGAACA+TGG | 0.584686 | 4_1:-57825018 | None:intergenic |
| GAATTGATGTTGTTATATGG+TGG | 0.587435 | 4_1:+57825264 | Msa0558820:CDS |
| TCAATCCTTCCTTCAGACAA+AGG | 0.589654 | 4_1:-57825344 | None:intergenic |
| CAGGTTCAGAGAAATTTGAC+TGG | 0.594416 | 4_1:+57825168 | Msa0558820:intron |
| GTAATAATATCTTTGAATCG+AGG | 0.598480 | 4_1:-57825852 | None:intergenic |
| TCGACAAAATTGTACCGCGA+TGG | 0.598932 | 4_1:+57826920 | Msa0558820:CDS |
| TCCATAAGCTGTTCTCTAGG+AGG | 0.599001 | 4_1:-57827388 | None:intergenic |
| GGGATAGAAATGAGGGTGCA+TGG | 0.601643 | 4_1:+57825285 | Msa0558820:CDS |
| TTGTGCAGAATAATATCTTG+TGG | 0.604851 | 4_1:+57825811 | Msa0558820:CDS |
| GGTACTGATTGAAAACCTCA+TGG | 0.605597 | 4_1:+57826425 | Msa0558820:CDS |
| TCTTCAATTGAGAAATCAAG+TGG | 0.606160 | 4_1:-57826599 | None:intergenic |
| ATATGGTGGGATAGAAATGA+GGG | 0.617267 | 4_1:+57825278 | Msa0558820:CDS |
| CTATAAGAGCCTCAATGTGG+TGG | 0.632112 | 4_1:+57827937 | Msa0558820:intron |
| TGTGCATATGGAACATGTGA+AGG | 0.634120 | 4_1:-57826450 | None:intergenic |
| GCATCACTTCCACCACATTG+AGG | 0.645928 | 4_1:-57827946 | None:intergenic |
| TAAAAGGAATTACCTCAACA+TGG | 0.650469 | 4_1:-57826993 | None:intergenic |
| TCAATTTCTGGTATGAATGG+GGG | 0.651927 | 4_1:-57825885 | None:intergenic |
| GGTGATCAAGTTGATTGGAG+AGG | 0.656464 | 4_1:+57827337 | Msa0558820:CDS |
| AACATGCAATTTCAGGTACG+AGG | 0.660550 | 4_1:+57826404 | Msa0558820:intron |
| ATTGTTGCCGCAATAAAGCA+GGG | 0.660696 | 4_1:+57827998 | Msa0558820:CDS |
| GCTAGTGGGATGTGAAGTGA+AGG | 0.662430 | 4_1:-57824966 | None:intergenic |
| GTGCATATGGAACATGTGAA+GGG | 0.665250 | 4_1:-57826449 | None:intergenic |
| TGTTAATGGAGAAGGTGACA+AGG | 0.682450 | 4_1:-57825096 | None:intergenic |
| CCGCGATGGATTCTTCATGT+GGG | 0.687009 | 4_1:+57826934 | Msa0558820:CDS |
| GAACATGTGAAGGGTCCATG+AGG | 0.693173 | 4_1:-57826440 | None:intergenic |
| AATTTGACTGGTACTCACAG+TGG | 0.710936 | 4_1:+57825180 | Msa0558820:CDS |
| AGCCTATAAGAGCCTCAATG+TGG | 0.719694 | 4_1:+57827934 | Msa0558820:intron |
| TTGGAGAGGAAAATATAGTG+GGG | 0.734428 | 4_1:+57827351 | Msa0558820:CDS |
| CCCACATGAAGAATCCATCG+CGG | 0.771717 | 4_1:-57826934 | None:intergenic |
| GAAGGAAGGATTGATCAATG+GGG | 0.807729 | 4_1:+57825353 | Msa0558820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTGACAAAATTATA+CGG | + | chr4_1:57826320-57826339 | Msa0558820:intron | 10.0% |
| !!! | AAAAATGTTTGTTACTTAAA+GGG | + | chr4_1:57825506-57825525 | Msa0558820:intron | 15.0% |
| !! | ATAATTAAAATGTAGTTGTT+TGG | - | chr4_1:57826286-57826305 | None:intergenic | 15.0% |
| !!! | ACAACTACATTTTAATTATA+CGG | + | chr4_1:57826287-57826306 | Msa0558820:intron | 15.0% |
| !!! | GTATTTTTTTTCAATAGATT+AGG | + | chr4_1:57827164-57827183 | Msa0558820:intron | 15.0% |
| !!! | TAATGTTACTAACTTTTTTT+AGG | + | chr4_1:57827204-57827223 | Msa0558820:intron | 15.0% |
| !!! | TTTTTAGGAACAAAAAATAA+TGG | + | chr4_1:57827219-57827238 | Msa0558820:intron | 15.0% |
| !! | AAAAACTTCACATATATTAA+AGG | - | chr4_1:57827493-57827512 | None:intergenic | 15.0% |
| !! | AGAAATTATTAAATTTGAAC+AGG | + | chr4_1:57827873-57827892 | Msa0558820:intron | 15.0% |
| !!! | AAGAACATGGATTTTTTTAA+TGG | - | chr4_1:57825008-57825027 | None:intergenic | 20.0% |
| !!! | GAAAAATGTTTGTTACTTAA+AGG | + | chr4_1:57825505-57825524 | Msa0558820:intron | 20.0% |
| !!! | TTAACACTAAATTGCATTTT+TGG | - | chr4_1:57825592-57825611 | None:intergenic | 20.0% |
| !! | TGCAATTTAGTGTTAAAAAA+TGG | + | chr4_1:57825596-57825615 | Msa0558820:intron | 20.0% |
| !! | GATTCAAAGATATTATTACA+AGG | + | chr4_1:57825856-57825875 | Msa0558820:CDS | 20.0% |
| !! | AAATTAAAATCATACCCATA+AGG | - | chr4_1:57825951-57825970 | None:intergenic | 20.0% |
| !!! | TGATATAATTATTGATGATC+TGG | + | chr4_1:57826060-57826079 | Msa0558820:intron | 20.0% |
| !! | GAAAGATATACTATTATGTT+AGG | - | chr4_1:57826374-57826393 | None:intergenic | 20.0% |
| !! | CTATATAAATAAAAGATGCT+TGG | - | chr4_1:57826683-57826702 | None:intergenic | 20.0% |
| !! | ACTAATCTGTGAATTATAAA+AGG | - | chr4_1:57827012-57827031 | None:intergenic | 20.0% |
| !! | AAAGTTAGTAACATTATTTG+AGG | - | chr4_1:57827200-57827219 | None:intergenic | 20.0% |
| !!! | TTTTACACTTGAAAATCTAT+TGG | - | chr4_1:57827548-57827567 | None:intergenic | 20.0% |
| !!! | AATATGCTGAAAACATATTT+TGG | - | chr4_1:57827698-57827717 | None:intergenic | 20.0% |
| !! | TATAATAAGTTATCCAAGAA+AGG | - | chr4_1:57827728-57827747 | None:intergenic | 20.0% |
| !! | ATAATTTCTAATCAAGAACA+TGG | - | chr4_1:57827862-57827881 | None:intergenic | 20.0% |
| ! | AATATGTGATCTTGACAAAA+GGG | + | chr4_1:57825217-57825236 | Msa0558820:CDS | 25.0% |
| ! | AATTGATGTTGTTATATGGT+GGG | + | chr4_1:57825265-57825284 | Msa0558820:CDS | 25.0% |
| !! | CAAACATTTTTCTTCAAAGA+CGG | - | chr4_1:57825497-57825516 | None:intergenic | 25.0% |
| !! | AATGTGTAACAATTTGCTTT+AGG | + | chr4_1:57825635-57825654 | Msa0558820:intron | 25.0% |
| !! | ATGTGTAACAATTTGCTTTA+GGG | + | chr4_1:57825636-57825655 | Msa0558820:intron | 25.0% |
| ! | CATGATAACAAAACAAACAA+TGG | - | chr4_1:57825709-57825728 | None:intergenic | 25.0% |
| ! | AGTTTATGCAAAAGTAAATG+AGG | - | chr4_1:57825736-57825755 | None:intergenic | 25.0% |
| !! | AGAATAATATCTTGTGGTTT+TGG | + | chr4_1:57825817-57825836 | Msa0558820:CDS | 25.0% |
| ! | GTAATAATATCTTTGAATCG+AGG | - | chr4_1:57825855-57825874 | None:intergenic | 25.0% |
| !!! | GCTTAATGTAATTGTTTTAG+TGG | + | chr4_1:57826029-57826048 | Msa0558820:intron | 25.0% |
| !!! | AATTATTGATGATCTGGTTT+TGG | + | chr4_1:57826066-57826085 | Msa0558820:intron | 25.0% |
| ! | AAAAATGCTATAAACTCATG+AGG | + | chr4_1:57826249-57826268 | Msa0558820:intron | 25.0% |
| ! | TTAATTGAACATGCAATTTC+AGG | + | chr4_1:57826397-57826416 | Msa0558820:intron | 25.0% |
| !! | TGTATATATGTCTACCTTTT+GGG | - | chr4_1:57826494-57826513 | None:intergenic | 25.0% |
| !! | ATGTATATATGTCTACCTTT+TGG | - | chr4_1:57826495-57826514 | None:intergenic | 25.0% |
| ! | GTGTCATATATGAAACAAAT+AGG | - | chr4_1:57826528-57826547 | None:intergenic | 25.0% |
| ! | ATTGAAGAGTTAGATATCAA+TGG | + | chr4_1:57826614-57826633 | Msa0558820:CDS | 25.0% |
| ! | TATAAATAAAAGATGCTTGG+TGG | - | chr4_1:57826680-57826699 | None:intergenic | 25.0% |
| !!! | ATTTGCACTCAGTTTTATAT+AGG | + | chr4_1:57826765-57826784 | Msa0558820:intron | 25.0% |
| !! | GTTTACTTTATTTGATCAAC+GGG | - | chr4_1:57827038-57827057 | None:intergenic | 25.0% |
| !! | GGTTTACTTTATTTGATCAA+CGG | - | chr4_1:57827039-57827058 | None:intergenic | 25.0% |
| ! | ACAATATCAAATTCAATCAC+TGG | + | chr4_1:57827142-57827161 | Msa0558820:intron | 25.0% |
| ! | TAGTAACATTATTTGAGGAA+TGG | - | chr4_1:57827195-57827214 | None:intergenic | 25.0% |
| !!! | TTGTGATTGGTTTTAGAAAA+TGG | + | chr4_1:57827299-57827318 | Msa0558820:CDS | 25.0% |
| ! | TAACTCACATAAGATTGAAT+TGG | + | chr4_1:57827419-57827438 | Msa0558820:intron | 25.0% |
| !! | TGCTAAAAATTTGTTCTATC+TGG | + | chr4_1:57827584-57827603 | Msa0558820:intron | 25.0% |
| !! | ACTTATTTGAGTTTGTTTAG+TGG | + | chr4_1:57827611-57827630 | Msa0558820:intron | 25.0% |
| ! | TATTAAATTTGAACAGGTAC+TGG | + | chr4_1:57827879-57827898 | Msa0558820:intron | 25.0% |
| ! | TTTGTGTTTTATGTGCTAGT+GGG | - | chr4_1:57824983-57825002 | None:intergenic | 30.0% |
| CTACTACTAGAATCTGTTAA+TGG | - | chr4_1:57825113-57825132 | None:intergenic | 30.0% | |
| ! | CTTTTGTCAAGATCACATAT+TGG | - | chr4_1:57825218-57825237 | None:intergenic | 30.0% |
| CAATATGTGATCTTGACAAA+AGG | + | chr4_1:57825216-57825235 | Msa0558820:CDS | 30.0% | |
| TGGGAATTGATGTTGTTATA+TGG | + | chr4_1:57825261-57825280 | Msa0558820:CDS | 30.0% | |
| GAATTGATGTTGTTATATGG+TGG | + | chr4_1:57825264-57825283 | Msa0558820:CDS | 30.0% | |
| !! | TATCATGGTTGGTGTTTTAA+TGG | + | chr4_1:57825392-57825411 | Msa0558820:intron | 30.0% |
| CGAAACCCAAAATTAGTTAA+GGG | + | chr4_1:57825565-57825584 | Msa0558820:intron | 30.0% | |
| ! | TTGGTCCCTTAACTAATTTT+GGG | - | chr4_1:57825573-57825592 | None:intergenic | 30.0% |
| ! | TTTGGTCCCTTAACTAATTT+TGG | - | chr4_1:57825574-57825593 | None:intergenic | 30.0% |
| ATATTATTCTGCACAATGCT+TGG | - | chr4_1:57825807-57825826 | None:intergenic | 30.0% | |
| TTGTGCAGAATAATATCTTG+TGG | + | chr4_1:57825811-57825830 | Msa0558820:CDS | 30.0% | |
| !! | ATCAATTTCTGGTATGAATG+GGG | - | chr4_1:57825889-57825908 | None:intergenic | 30.0% |
| !! | CATCAATTTCTGGTATGAAT+GGG | - | chr4_1:57825890-57825909 | None:intergenic | 30.0% |
| !! | TCATCAATTTCTGGTATGAA+TGG | - | chr4_1:57825891-57825910 | None:intergenic | 30.0% |
| !! | AATGATGGATCATCAATTTC+TGG | - | chr4_1:57825900-57825919 | None:intergenic | 30.0% |
| GAAACAGAGATATTCCTTAT+GGG | + | chr4_1:57825934-57825953 | Msa0558820:CDS | 30.0% | |
| AAATCCAACACATATGCATA+TGG | + | chr4_1:57826002-57826021 | Msa0558820:intron | 30.0% | |
| AGCATGCAAATTATGCTATA+GGG | - | chr4_1:57826140-57826159 | None:intergenic | 30.0% | |
| TAGCATGCAAATTATGCTAT+AGG | - | chr4_1:57826141-57826160 | None:intergenic | 30.0% | |
| AGTCATATAAGCTAACTGTT+TGG | + | chr4_1:57826343-57826362 | Msa0558820:intron | 30.0% | |
| TCTTCAATTGAGAAATCAAG+TGG | - | chr4_1:57826602-57826621 | None:intergenic | 30.0% | |
| CATAGAAAATTTCTTCCGAA+CGG | - | chr4_1:57826824-57826843 | None:intergenic | 30.0% | |
| TTTATATCTTCTCCATGTTG+AGG | + | chr4_1:57826981-57827000 | Msa0558820:CDS | 30.0% | |
| TAAAAGGAATTACCTCAACA+TGG | - | chr4_1:57826996-57827015 | None:intergenic | 30.0% | |
| AGTTATGCTGTCATAGATAA+TGG | + | chr4_1:57827079-57827098 | Msa0558820:intron | 30.0% | |
| !! | GAACAAAAAATAATGGATGC+TGG | + | chr4_1:57827226-57827245 | Msa0558820:CDS | 30.0% |
| ! | AAATGGTTAAAGAAGTATGC+AGG | + | chr4_1:57827316-57827335 | Msa0558820:CDS | 30.0% |
| ATTGGAGAGGAAAATATAGT+GGG | + | chr4_1:57827350-57827369 | Msa0558820:CDS | 30.0% | |
| CATAAGATTGAATTGGAACA+TGG | + | chr4_1:57827426-57827445 | Msa0558820:intron | 30.0% | |
| TGTTGCATTTAGACAATGTT+TGG | - | chr4_1:57827829-57827848 | None:intergenic | 30.0% | |
| AAACATTGTCTAAATGCAAC+AGG | + | chr4_1:57827828-57827847 | Msa0558820:intron | 30.0% | |
| ATCATATCAGTTGCTTCAAT+TGG | + | chr4_1:57827974-57827993 | Msa0558820:CDS | 30.0% | |
| TCATATCAGTTGCTTCAATT+GGG | + | chr4_1:57827975-57827994 | Msa0558820:CDS | 30.0% | |
| AAGAAATTCTATAGTTGTGC+TGG | + | chr4_1:57828039-57828058 | Msa0558820:CDS | 30.0% | |
| ! | GTTTGTGTTTTATGTGCTAG+TGG | - | chr4_1:57824984-57825003 | None:intergenic | 35.0% |
| !!! | TGAATTTTGAAGTGTTCCCA+CGG | - | chr4_1:57825064-57825083 | None:intergenic | 35.0% |
| CTAGAATCTGTTAATGGAGA+AGG | - | chr4_1:57825107-57825126 | None:intergenic | 35.0% | |
| TAGTAGTAGTAACCTTGAAG+TGG | + | chr4_1:57825124-57825143 | Msa0558820:intron | 35.0% | |
| AGATCACATATTGGCATCAA+AGG | - | chr4_1:57825209-57825228 | None:intergenic | 35.0% | |
| ! | TATATGGTGGGATAGAAATG+AGG | + | chr4_1:57825277-57825296 | Msa0558820:CDS | 35.0% |
| ! | ATATGGTGGGATAGAAATGA+GGG | + | chr4_1:57825278-57825297 | Msa0558820:CDS | 35.0% |
| TGAAGGAAGGATTGATCAAT+GGG | + | chr4_1:57825352-57825371 | Msa0558820:CDS | 35.0% | |
| ! | ACATTTTTCTTCAAAGACGG+CGG | - | chr4_1:57825494-57825513 | None:intergenic | 35.0% |
| ACATCTGTTTCGTTTCACTT+TGG | - | chr4_1:57825533-57825552 | None:intergenic | 35.0% | |
| GTGAAACGAAACAGATGTAA+AGG | + | chr4_1:57825535-57825554 | Msa0558820:intron | 35.0% | |
| !!! | ACTAATTTTGGGTTTCGCTT+TGG | - | chr4_1:57825562-57825581 | None:intergenic | 35.0% |
| GCGAAACCCAAAATTAGTTA+AGG | + | chr4_1:57825564-57825583 | Msa0558820:intron | 35.0% | |
| TTTACACTGCAACACATCTA+TGG | - | chr4_1:57825677-57825696 | None:intergenic | 35.0% | |
| TTGAATCGAGGATCAGTATT+TGG | - | chr4_1:57825843-57825862 | None:intergenic | 35.0% | |
| !! | TCAATTTCTGGTATGAATGG+GGG | - | chr4_1:57825888-57825907 | None:intergenic | 35.0% |
| ! | TCCATCATTTGCTAGCTTAA+TGG | + | chr4_1:57825911-57825930 | Msa0558820:CDS | 35.0% |
| ! | CCATCATTTGCTAGCTTAAT+GGG | + | chr4_1:57825912-57825931 | Msa0558820:CDS | 35.0% |
| GGAAACAGAGATATTCCTTA+TGG | + | chr4_1:57825933-57825952 | Msa0558820:CDS | 35.0% | |
| TATGCCATATGCATATGTGT+TGG | - | chr4_1:57826009-57826028 | None:intergenic | 35.0% | |
| GTTAATCCATAGTGTGCATA+TGG | - | chr4_1:57826465-57826484 | None:intergenic | 35.0% | |
| GTGAATAATGCTGATAGAGA+AGG | + | chr4_1:57826569-57826588 | Msa0558820:intron | 35.0% | |
| AATAATGCTGATAGAGAAGG+AGG | + | chr4_1:57826572-57826591 | Msa0558820:CDS | 35.0% | |
| AATGGTTTCACTGCAAATCA+GGG | + | chr4_1:57826632-57826651 | Msa0558820:CDS | 35.0% | |
| TGCATCTTCTGTTGAAACTA+AGG | + | chr4_1:57826718-57826737 | Msa0558820:CDS | 35.0% | |
| TAATGCAGAAATCATCCGTT+CGG | + | chr4_1:57826806-57826825 | Msa0558820:intron | 35.0% | |
| CAAATCAGTCTACTATTACC+AGG | - | chr4_1:57826871-57826890 | None:intergenic | 35.0% | |
| CTGGTAATAGTAGACTGATT+TGG | + | chr4_1:57826869-57826888 | Msa0558820:CDS | 35.0% | |
| TGGTCAAGAAAATTGGCATA+AGG | + | chr4_1:57827246-57827265 | Msa0558820:CDS | 35.0% | |
| GATTGGAGAGGAAAATATAG+TGG | + | chr4_1:57827349-57827368 | Msa0558820:CDS | 35.0% | |
| TTGGAGAGGAAAATATAGTG+GGG | + | chr4_1:57827351-57827370 | Msa0558820:CDS | 35.0% | |
| TTAGTGGCATAAACACTTGT+AGG | + | chr4_1:57827627-57827646 | Msa0558820:intron | 35.0% | |
| CATATTTCCACAACCTTTCT+TGG | + | chr4_1:57827712-57827731 | Msa0558820:intron | 35.0% | |
| AAGTTATCCAAGAAAGGTTG+TGG | - | chr4_1:57827722-57827741 | None:intergenic | 35.0% | |
| ! | CACTTGTGAGTTGAAGAACA+TGG | - | chr4_1:57825021-57825040 | None:intergenic | 40.0% |
| TCAACACTTCCATTAATCCG+TGG | + | chr4_1:57825044-57825063 | Msa0558820:CDS | 40.0% | |
| CAACACTTCCATTAATCCGT+GGG | + | chr4_1:57825045-57825064 | Msa0558820:CDS | 40.0% | |
| TGTTAATGGAGAAGGTGACA+AGG | - | chr4_1:57825099-57825118 | None:intergenic | 40.0% | |
| GATGAACCAGAAGTTGAAAC+AGG | + | chr4_1:57825149-57825168 | Msa0558820:intron | 40.0% | |
| TCTGAACCTGTTTCAACTTC+TGG | - | chr4_1:57825158-57825177 | None:intergenic | 40.0% | |
| CAGGTTCAGAGAAATTTGAC+TGG | + | chr4_1:57825168-57825187 | Msa0558820:intron | 40.0% | |
| AATTTGACTGGTACTCACAG+TGG | + | chr4_1:57825180-57825199 | Msa0558820:CDS | 40.0% | |
| ACCTCATGCTAAGAAAGTGA+TGG | + | chr4_1:57825241-57825260 | Msa0558820:CDS | 40.0% | |
| CCTCATGCTAAGAAAGTGAT+GGG | + | chr4_1:57825242-57825261 | Msa0558820:CDS | 40.0% | |
| !! | GACAAAGGTGCTAATCTATG+AGG | - | chr4_1:57825332-57825351 | None:intergenic | 40.0% |
| AGATTAGCACCTTTGTCTGA+AGG | + | chr4_1:57825335-57825354 | Msa0558820:CDS | 40.0% | |
| TCAATCCTTCCTTCAGACAA+AGG | - | chr4_1:57825347-57825366 | None:intergenic | 40.0% | |
| CTGAAGGAAGGATTGATCAA+TGG | + | chr4_1:57825351-57825370 | Msa0558820:CDS | 40.0% | |
| GAAGGAAGGATTGATCAATG+GGG | + | chr4_1:57825353-57825372 | Msa0558820:CDS | 40.0% | |
| AGGTTACAGTGTGTGTATCA+TGG | + | chr4_1:57825377-57825396 | Msa0558820:intron | 40.0% | |
| TACAGTGTGTGTATCATGGT+TGG | + | chr4_1:57825381-57825400 | Msa0558820:intron | 40.0% | |
| !!! | GGTTGGTGTTTTAATGGATC+AGG | + | chr4_1:57825398-57825417 | Msa0558820:intron | 40.0% |
| TGATTGCAAGTTCATTCCTC+AGG | + | chr4_1:57825421-57825440 | Msa0558820:intron | 40.0% | |
| !! | GTATCAGAAGGACTAGTTAC+CGG | - | chr4_1:57825464-57825483 | None:intergenic | 40.0% |
| !! | GGCGGTTAAAAAGTATCAGA+AGG | - | chr4_1:57825476-57825495 | None:intergenic | 40.0% |
| !!! | AGCAGCTACACATGCTTTTT+TGG | - | chr4_1:57825781-57825800 | None:intergenic | 40.0% |
| CCCATTAAGCTAGCAAATGA+TGG | - | chr4_1:57825915-57825934 | None:intergenic | 40.0% | |
| GCATGCTATGCTACTATTCT+AGG | + | chr4_1:57826153-57826172 | Msa0558820:intron | 40.0% | |
| ! | AACATGCAATTTCAGGTACG+AGG | + | chr4_1:57826404-57826423 | Msa0558820:intron | 40.0% |
| !! | GGTACTGATTGAAAACCTCA+TGG | + | chr4_1:57826425-57826444 | Msa0558820:CDS | 40.0% |
| GTGCATATGGAACATGTGAA+GGG | - | chr4_1:57826452-57826471 | None:intergenic | 40.0% | |
| TGTGCATATGGAACATGTGA+AGG | - | chr4_1:57826453-57826472 | None:intergenic | 40.0% | |
| CATGTTCCATATGCACACTA+TGG | + | chr4_1:57826456-57826475 | Msa0558820:CDS | 40.0% | |
| !! | ATATGTCTACCTTTTGGGTC+TGG | - | chr4_1:57826489-57826508 | None:intergenic | 40.0% |
| CAATGGTTTCACTGCAAATC+AGG | + | chr4_1:57826631-57826650 | Msa0558820:CDS | 40.0% | |
| ACAGAAGATGCAAGTTCATC+TGG | - | chr4_1:57826710-57826729 | None:intergenic | 40.0% | |
| ATTTGTATTCCTGTGAGTCC+TGG | + | chr4_1:57826850-57826869 | Msa0558820:CDS | 40.0% | |
| ! | TGGTGCTTTCCGAGAAATTT+TGG | + | chr4_1:57826889-57826908 | Msa0558820:CDS | 40.0% |
| ! | TTCCGAGAAATTTTGGACTG+TGG | + | chr4_1:57826896-57826915 | Msa0558820:CDS | 40.0% |
| ! | TCCGAGAAATTTTGGACTGT+GGG | + | chr4_1:57826897-57826916 | Msa0558820:CDS | 40.0% |
| ACCCACAGTCCAAAATTTCT+CGG | - | chr4_1:57826901-57826920 | None:intergenic | 40.0% | |
| AACCATCACACTTGCAGATT+TGG | + | chr4_1:57827055-57827074 | Msa0558820:intron | 40.0% | |
| ACCATCACACTTGCAGATTT+GGG | + | chr4_1:57827056-57827075 | Msa0558820:intron | 40.0% | |
| TGGATGCTGGTCAAGAAAAT+TGG | + | chr4_1:57827239-57827258 | Msa0558820:CDS | 40.0% | |
| !! | ATGCAGGTGATCAAGTTGAT+TGG | + | chr4_1:57827332-57827351 | Msa0558820:CDS | 40.0% |
| ! | TGTAGGTTGTGAGACTGTTT+TGG | + | chr4_1:57827644-57827663 | Msa0558820:intron | 40.0% |
| AACTCTTGCAATTCACCGTA+TGG | - | chr4_1:57827907-57827926 | None:intergenic | 40.0% | |
| ATTGTTGCCGCAATAAAGCA+GGG | + | chr4_1:57827998-57828017 | Msa0558820:CDS | 40.0% | |
| ! | AACCATTCCCTGCTTTATTG+CGG | - | chr4_1:57828008-57828027 | None:intergenic | 40.0% |
| TACTTTCATTCGCATTGTCG+CGG | + | chr4_1:57828065-57828084 | Msa0558820:CDS | 40.0% | |
| ! | GAAGTGTTCCCACGGATTAA+TGG | - | chr4_1:57825056-57825075 | None:intergenic | 45.0% |
| CTGGTTCATCATCCACTTCA+AGG | - | chr4_1:57825139-57825158 | None:intergenic | 45.0% | |
| CCCATCACTTTCTTAGCATG+AGG | - | chr4_1:57825245-57825264 | None:intergenic | 45.0% | |
| TAGCACCTTTGTCTGAAGGA+AGG | + | chr4_1:57825339-57825358 | Msa0558820:CDS | 45.0% | |
| GAAGGATTGATCAATGGGGT+AGG | + | chr4_1:57825357-57825376 | Msa0558820:CDS | 45.0% | |
| GGATTAACTCCAGACCCAAA+AGG | + | chr4_1:57826477-57826496 | Msa0558820:CDS | 45.0% | |
| GTTTCACTGCAAATCAGGGT+TGG | + | chr4_1:57826636-57826655 | Msa0558820:CDS | 45.0% | |
| CTACTATTACCAGGACTCAC+AGG | - | chr4_1:57826862-57826881 | None:intergenic | 45.0% | |
| TCGACAAAATTGTACCGCGA+TGG | + | chr4_1:57826920-57826939 | Msa0558820:CDS | 45.0% | |
| TCCCAAATCTGCAAGTGTGA+TGG | - | chr4_1:57827060-57827079 | None:intergenic | 45.0% | |
| TGCCTTTGTTGGCACAAAAC+AGG | - | chr4_1:57827272-57827291 | None:intergenic | 45.0% | |
| !! | ACAAGAGCATCTGCCTTTGT+TGG | - | chr4_1:57827283-57827302 | None:intergenic | 45.0% |
| AAGGCAGATGCTCTTGTGAT+TGG | + | chr4_1:57827286-57827305 | Msa0558820:CDS | 45.0% | |
| !! | GGTGATCAAGTTGATTGGAG+AGG | + | chr4_1:57827337-57827356 | Msa0558820:CDS | 45.0% |
| ACCTCCTAGAGAACAGCTTA+TGG | + | chr4_1:57827387-57827406 | Msa0558820:CDS | 45.0% | |
| TCCATAAGCTGTTCTCTAGG+AGG | - | chr4_1:57827391-57827410 | None:intergenic | 45.0% | |
| CTGTCCATAAGCTGTTCTCT+AGG | - | chr4_1:57827394-57827413 | None:intergenic | 45.0% | |
| CTAGAGAACAGCTTATGGAC+AGG | + | chr4_1:57827392-57827411 | Msa0558820:CDS | 45.0% | |
| AGAACAGCTTATGGACAGGT+AGG | + | chr4_1:57827396-57827415 | Msa0558820:intron | 45.0% | |
| AGCCTATAAGAGCCTCAATG+TGG | + | chr4_1:57827934-57827953 | Msa0558820:intron | 45.0% | |
| CACCACATTGAGGCTCTTAT+AGG | - | chr4_1:57827939-57827958 | None:intergenic | 45.0% | |
| CTATAAGAGCCTCAATGTGG+TGG | + | chr4_1:57827937-57827956 | Msa0558820:intron | 45.0% | |
| GATTGTTGCCGCAATAAAGC+AGG | + | chr4_1:57827997-57828016 | Msa0558820:CDS | 45.0% | |
| GCTAGTGGGATGTGAAGTGA+AGG | - | chr4_1:57824969-57824988 | None:intergenic | 50.0% | |
| ! | GGGATAGAAATGAGGGTGCA+TGG | + | chr4_1:57825285-57825304 | Msa0558820:CDS | 50.0% |
| !! | TCAGAAGGACTAGTTACCGG+AGG | - | chr4_1:57825461-57825480 | None:intergenic | 50.0% |
| GAACATGTGAAGGGTCCATG+AGG | - | chr4_1:57826443-57826462 | None:intergenic | 50.0% | |
| ! | ACCGCGATGGATTCTTCATG+TGG | + | chr4_1:57826933-57826952 | Msa0558820:CDS | 50.0% |
| CCCACATGAAGAATCCATCG+CGG | - | chr4_1:57826937-57826956 | None:intergenic | 50.0% | |
| ! | CCGCGATGGATTCTTCATGT+GGG | + | chr4_1:57826934-57826953 | Msa0558820:CDS | 50.0% |
| ! | GGCCTGTTTTGTGCCAACAA+AGG | + | chr4_1:57827267-57827286 | Msa0558820:CDS | 50.0% |
| ! | TGTTCTCTAGGAGGTGTAGG+AGG | - | chr4_1:57827382-57827401 | None:intergenic | 50.0% |
| ! | AGCTGTTCTCTAGGAGGTGT+AGG | - | chr4_1:57827385-57827404 | None:intergenic | 50.0% |
| !! | GAACAGGTACTGGAGCCATA+CGG | + | chr4_1:57827889-57827908 | Msa0558820:intron | 50.0% |
| GCATCACTTCCACCACATTG+AGG | - | chr4_1:57827949-57827968 | None:intergenic | 50.0% | |
| TGCCGCAATAAAGCAGGGAA+TGG | + | chr4_1:57828003-57828022 | Msa0558820:CDS | 50.0% | |
| ATTCCTCAGGCACCTCGTGA+AGG | + | chr4_1:57825434-57825453 | Msa0558820:intron | 55.0% | |
| GTTACCGGAGGTCCTTCACG+AGG | - | chr4_1:57825449-57825468 | None:intergenic | 60.0% | |
| ! | GGTCCTTCACGAGGTGCCTG+AGG | - | chr4_1:57825440-57825459 | None:intergenic | 65.0% |
| GGCACCTCGTGAAGGACCTC+CGG | + | chr4_1:57825442-57825461 | Msa0558820:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 57824939 | 57828138 | 57824939 | ID=Msa0558820;Name=Msa0558820 |
| chr4_1 | mRNA | 57824939 | 57828138 | 57824939 | ID=Msa0558820-mRNA-1;Parent=Msa0558820;Name=Msa0558820-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0.57|0.62|1|0.57|0.62|8|0|473 |
| chr4_1 | exon | 57824939 | 57825131 | 57824939 | ID=Msa0558820-mRNA-1:exon:17562;Parent=Msa0558820-mRNA-1 |
| chr4_1 | exon | 57825171 | 57825388 | 57825171 | ID=Msa0558820-mRNA-1:exon:17563;Parent=Msa0558820-mRNA-1 |
| chr4_1 | exon | 57825768 | 57825955 | 57825768 | ID=Msa0558820-mRNA-1:exon:17564;Parent=Msa0558820-mRNA-1 |
| chr4_1 | exon | 57826419 | 57826498 | 57826419 | ID=Msa0558820-mRNA-1:exon:17565;Parent=Msa0558820-mRNA-1 |
| chr4_1 | exon | 57826570 | 57826739 | 57826570 | ID=Msa0558820-mRNA-1:exon:17566;Parent=Msa0558820-mRNA-1 |
| chr4_1 | exon | 57826814 | 57827002 | 57826814 | ID=Msa0558820-mRNA-1:exon:17567;Parent=Msa0558820-mRNA-1 |
| chr4_1 | exon | 57827226 | 57827413 | 57827226 | ID=Msa0558820-mRNA-1:exon:17568;Parent=Msa0558820-mRNA-1 |
| chr4_1 | exon | 57827946 | 57828138 | 57827946 | ID=Msa0558820-mRNA-1:exon:17569;Parent=Msa0558820-mRNA-1 |
| chr4_1 | CDS | 57824939 | 57825131 | 57824939 | ID=Msa0558820-mRNA-1:cds;Parent=Msa0558820-mRNA-1 |
| chr4_1 | CDS | 57825171 | 57825388 | 57825171 | ID=Msa0558820-mRNA-1:cds;Parent=Msa0558820-mRNA-1 |
| chr4_1 | CDS | 57825768 | 57825955 | 57825768 | ID=Msa0558820-mRNA-1:cds;Parent=Msa0558820-mRNA-1 |
| chr4_1 | CDS | 57826419 | 57826498 | 57826419 | ID=Msa0558820-mRNA-1:cds;Parent=Msa0558820-mRNA-1 |
| chr4_1 | CDS | 57826570 | 57826739 | 57826570 | ID=Msa0558820-mRNA-1:cds;Parent=Msa0558820-mRNA-1 |
| chr4_1 | CDS | 57826814 | 57827002 | 57826814 | ID=Msa0558820-mRNA-1:cds;Parent=Msa0558820-mRNA-1 |
| chr4_1 | CDS | 57827226 | 57827413 | 57827226 | ID=Msa0558820-mRNA-1:cds;Parent=Msa0558820-mRNA-1 |
| chr4_1 | CDS | 57827946 | 57828138 | 57827946 | ID=Msa0558820-mRNA-1:cds;Parent=Msa0558820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
