AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1232010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1232010 MtrunA17_Chr8g0341001 98.592 355 5 0 40 394 1 355 0.0 719
Msa1232010 MtrunA17_Chr2g0330781 77.054 353 81 0 41 393 1 353 0.0 573
Msa1232010 MtrunA17_Chr2g0320671 62.385 327 122 1 68 394 27 352 5.15e-149 426
Msa1232010 MtrunA17_Chr4g0027521 51.368 329 158 2 68 394 24 352 1.21e-116 343
Msa1232010 MtrunA17_Chr3g0105401 42.857 350 197 3 43 391 1 348 1.78e-97 294
Msa1232010 MtrunA17_Chr5g0438621 42.899 338 189 2 49 386 11 344 4.88e-97 293
Msa1232010 MtrunA17_Chr1g0156931 43.567 342 184 5 49 386 17 353 8.07e-97 293
Msa1232010 MtrunA17_Chr3g0120861 43.963 323 180 1 69 391 36 357 1.91e-95 290
Msa1232010 MtrunA17_Chr5g0438641 42.105 323 186 1 69 391 30 351 2.14e-95 289
Msa1232010 MtrunA17_Chr5g0438631 40.762 341 193 4 49 386 9 343 2.51e-94 286
Msa1232010 MtrunA17_Chr5g0432101 44.127 315 171 4 71 382 33 345 7.35e-91 278
Msa1232010 MtrunA17_Chr4g0046151 41.543 337 186 5 49 377 15 348 2.08e-89 274
Msa1232010 MtrunA17_Chr8g0371491 41.925 322 186 1 69 390 34 354 1.49e-88 272
Msa1232010 MtrunA17_Chr5g0405821 43.492 315 175 3 69 381 41 354 1.19e-87 270
Msa1232010 MtrunA17_Chr2g0283191 38.710 341 197 6 47 377 14 352 1.64e-86 267
Msa1232010 MtrunA17_Chr8g0371471 40.379 317 188 1 70 386 40 355 3.86e-86 266
Msa1232010 MtrunA17_Chr3g0142921 40.517 348 199 4 49 390 9 354 9.24e-86 265
Msa1232010 MtrunA17_Chr1g0156921 40.841 333 188 5 49 376 18 346 3.00e-85 263
Msa1232010 MtrunA17_Chr5g0405831 39.169 337 200 3 58 390 27 362 5.76e-85 263
Msa1232010 MtrunA17_Chr8g0371481 40.252 318 188 2 70 386 40 356 8.91e-85 262
Msa1232010 MtrunA17_Chr1g0156891 40.176 341 198 5 49 386 20 357 7.96e-84 260
Msa1232010 MtrunA17_Chr3g0142941 42.038 314 180 2 69 382 45 356 4.78e-83 258
Msa1232010 MtrunA17_Chr1g0156911 40.575 313 184 2 70 382 36 346 2.75e-82 256
Msa1232010 MtrunA17_Chr1g0156901 41.325 317 184 2 66 382 45 359 4.83e-82 255
Msa1232010 MtrunA17_Chr4g0027571 50.455 220 108 1 174 393 3 221 1.78e-78 241
Msa1232010 MtrunA17_Chr5g0437421 36.677 319 192 5 70 381 31 346 1.22e-70 226
Msa1232010 MtrunA17_Chr1g0157001 38.689 305 182 4 76 379 41 341 4.62e-68 219
Msa1232010 MtrunA17_Chr7g0275021 34.181 354 221 8 43 388 1 350 3.80e-65 212
Msa1232010 MtrunA17_Chr7g0274991 34.493 345 212 8 51 386 8 347 3.48e-64 209
Msa1232010 MtrunA17_Chr7g0275011 34.694 343 211 8 49 388 18 350 5.82e-64 209
Msa1232010 MtrunA17_Chr1g0182811 35.938 320 196 6 71 385 33 348 7.45e-63 206
Msa1232010 MtrunA17_Chr1g0189901 35.737 319 196 7 71 385 31 344 8.75e-62 203
Msa1232010 MtrunA17_Chr2g0285061 35.345 348 207 10 40 382 8 342 6.62e-61 201
Msa1232010 MtrunA17_Chr7g0275001 33.626 342 217 7 48 386 6 340 7.41e-61 200
Msa1232010 MtrunA17_Chr8g0374101 32.948 346 222 6 49 386 15 358 8.40e-61 201
Msa1232010 MtrunA17_Chr7g0229581 58.784 148 60 1 246 393 8 154 1.45e-60 193
Msa1232010 MtrunA17_Chr5g0396511 33.230 322 194 5 74 385 49 359 7.33e-60 198
Msa1232010 MtrunA17_Chr4g0008851 33.894 357 221 9 40 388 1 350 9.83e-60 197
Msa1232010 MtrunA17_Chr6g0457921 34.006 347 212 10 49 388 10 346 2.76e-59 196
Msa1232010 MtrunA17_Chr8g0380041 35.754 358 208 11 38 388 4 346 3.37e-59 196
Msa1232010 MtrunA17_Chr3g0099161 33.967 368 223 11 27 385 51 407 3.68e-59 198
Msa1232010 MtrunA17_Chr1g0189931 33.333 342 219 7 51 388 12 348 6.75e-59 196
Msa1232010 MtrunA17_Chr2g0294301 33.518 361 224 7 32 388 4 352 6.15e-58 193
Msa1232010 MtrunA17_Chr1g0189891 34.384 349 211 9 51 393 9 345 2.38e-57 191
Msa1232010 MtrunA17_Chr5g0434621 34.783 345 207 11 51 388 6 339 2.61e-57 191
Msa1232010 MtrunA17_Chr3g0086641 33.728 338 212 8 50 382 17 347 4.33e-57 191
Msa1232010 MtrunA17_Chr4g0068441 32.964 361 220 9 41 389 3 353 1.34e-56 189
Msa1232010 MtrunA17_Chr5g0444401 33.239 352 219 9 43 386 1 344 6.33e-56 187
Msa1232010 MtrunA17_Chr7g0229591 48.889 180 92 0 66 245 25 204 4.33e-55 181
Msa1232010 MtrunA17_Chr3g0077571 34.328 335 208 9 50 382 11 335 1.84e-54 184
Msa1232010 MtrunA17_Chr7g0215961 31.304 345 213 8 50 388 10 336 3.32e-54 183
Msa1232010 MtrunA17_Chr3g0092131 34.870 347 203 12 48 386 6 337 3.81e-54 183
Msa1232010 MtrunA17_Chr3g0099151 32.000 375 233 12 26 385 36 403 3.89e-54 184
Msa1232010 MtrunA17_Chr3g0099231 32.945 343 214 11 51 385 8 342 1.12e-53 182
Msa1232010 MtrunA17_Chr4g0060811 34.796 319 193 9 75 386 31 341 2.22e-53 181
Msa1232010 MtrunA17_Chr4g0017431 31.412 347 228 9 40 382 1 341 8.88e-53 179
Msa1232010 MtrunA17_Chr2g0301641 34.242 330 204 7 71 393 43 366 1.04e-52 180
Msa1232010 MtrunA17_Chr3g0077581 35.093 322 195 10 69 382 34 349 3.06e-51 176
Msa1232010 MtrunA17_Chr8g0349341 34.365 323 185 11 71 382 37 343 4.79e-51 175
Msa1232010 MtrunA17_Chr8g0344931 33.435 329 199 9 71 394 37 350 2.32e-50 173
Msa1232010 MtrunA17_Chr5g0420811 35.625 320 182 12 69 382 31 332 4.68e-50 172
Msa1232010 MtrunA17_Chr4g0018571 55.844 154 67 1 240 393 25 177 6.96e-50 166
Msa1232010 MtrunA17_Chr3g0131321 31.902 326 214 6 68 388 31 353 2.05e-48 169
Msa1232010 MtrunA17_Chr8g0344941 32.087 321 206 7 71 385 41 355 2.64e-48 168
Msa1232010 MtrunA17_Chr8g0349321 31.722 331 205 10 71 393 37 354 4.51e-47 164
Msa1232010 MtrunA17_Chr2g0294311 29.577 355 224 7 49 386 10 355 5.09e-47 164
Msa1232010 MtrunA17_Chr8g0370951 30.791 354 224 13 45 385 4 349 4.51e-46 162
Msa1232010 MtrunA17_Chr6g0469521 55.039 129 57 1 239 367 25 152 1.36e-45 154
Msa1232010 MtrunA17_Chr2g0284951 34.796 319 186 11 69 382 31 332 2.17e-45 160
Msa1232010 MtrunA17_Chr8g0380031 32.075 318 198 8 69 383 82 384 2.65e-44 158
Msa1232010 MtrunA17_Chr3g0085231 32.565 347 208 11 48 388 9 335 7.88e-44 155
Msa1232010 MtrunA17_Chr8g0349331 32.390 318 168 8 71 382 35 311 1.41e-43 154
Msa1232010 MtrunA17_Chr1g0160011 31.496 381 223 13 36 391 5 372 1.58e-43 155
Msa1232010 MtrunA17_Chr8g0370981 26.601 406 246 7 36 393 7 408 8.80e-43 154
Msa1232010 MtrunA17_Chr2g0284921 30.723 332 210 8 57 382 20 337 2.05e-42 152
Msa1232010 MtrunA17_Chr3g0085881 33.642 324 185 11 69 384 31 332 3.52e-42 151
Msa1232010 MtrunA17_Chr2g0284991 33.714 350 206 14 46 385 6 339 1.32e-41 150
Msa1232010 MtrunA17_Chr8g0349301 32.975 279 164 8 71 342 37 299 4.07e-41 147
Msa1232010 MtrunA17_Chr1g0160031 31.551 374 218 13 41 388 7 368 7.42e-40 145
Msa1232010 MtrunA17_Chr7g0254461 30.179 391 224 14 40 391 1 381 1.82e-38 142
Msa1232010 MtrunA17_Chr1g0159991 31.267 371 211 14 45 385 8 364 2.76e-38 141
Msa1232010 MtrunA17_Chr2g0285001 31.686 344 207 14 52 382 9 337 4.90e-38 140
Msa1232010 MtrunA17_Chr2g0284941 31.858 339 188 13 46 376 6 309 7.26e-38 140
Msa1232010 MtrunA17_Chr4g0027581 43.709 151 62 2 261 389 41 190 1.50e-37 135
Msa1232010 MtrunA17_Chr1g0159981 29.459 370 225 12 46 389 19 378 3.36e-36 136
Msa1232010 MtrunA17_Chr6g0469511 53.846 117 54 0 66 182 25 141 7.09e-35 125
Msa1232010 MtrunA17_Chr1g0159971 30.448 335 199 11 71 381 47 371 1.07e-34 132
Msa1232010 MtrunA17_Chr2g0283481 30.179 391 224 18 27 388 5 375 2.02e-34 131
Msa1232010 MtrunA17_Chr1g0160101 30.226 354 198 12 70 391 41 377 2.55e-33 128
Msa1232010 MtrunA17_Chr8g0381581 26.913 379 224 13 46 386 9 372 1.48e-32 126
Msa1232010 MtrunA17_Chr3g0104821 28.235 340 218 9 71 391 44 376 3.34e-32 125
Msa1232010 MtrunA17_Chr7g0226911 26.913 379 220 14 48 386 8 369 1.06e-31 124
Msa1232010 MtrunA17_Chr7g0226941 30.878 353 191 15 70 388 32 365 1.11e-31 123
Msa1232010 MtrunA17_Chr1g0191461 29.178 377 219 11 43 387 1 361 3.03e-31 122
Msa1232010 MtrunA17_Chr7g0273101 30.836 347 199 14 70 388 28 361 3.20e-31 122
Msa1232010 MtrunA17_Chr4g0027561 56.122 98 43 0 66 163 25 122 3.76e-31 115
Msa1232010 MtrunA17_Chr8g0370961 27.391 230 162 2 165 394 11 235 2.71e-30 116
Msa1232010 MtrunA17_Chr7g0271551 29.518 332 205 13 70 387 34 350 8.80e-30 118
Msa1232010 MtrunA17_Chr2g0283511 28.912 377 220 17 40 386 1 359 7.60e-29 115
Msa1232010 MtrunA17_Chr8g0347751 28.080 349 211 11 71 391 36 372 8.35e-29 115
Msa1232010 MtrunA17_Chr2g0301581 29.839 372 218 14 40 391 1 349 8.79e-29 115
Msa1232010 MtrunA17_Chr6g0459921 32.432 222 138 8 169 384 127 342 6.74e-28 112
Msa1232010 MtrunA17_Chr6g0450731 27.222 360 217 13 50 386 9 346 7.64e-28 112
Msa1232010 MtrunA17_Chr7g0275291 26.722 363 230 12 42 381 6 355 1.20e-27 112
Msa1232010 MtrunA17_Chr6g0450721 26.667 360 227 12 50 391 9 349 2.38e-27 111
Msa1232010 MtrunA17_Chr2g0301541 29.301 372 220 14 40 391 1 349 3.52e-27 110
Msa1232010 MtrunA17_Chr0c01g0489581 28.889 360 213 15 48 386 5 342 3.85e-27 110
Msa1232010 MtrunA17_Chr6g0450711 27.729 339 210 10 70 386 121 446 4.71e-27 112
Msa1232010 MtrunA17_Chr2g0283501 29.619 341 202 13 71 386 31 358 6.28e-27 110
Msa1232010 MtrunA17_Chr2g0317261 28.011 357 220 13 48 386 5 342 8.86e-27 109
Msa1232010 MtrunA17_Chr2g0317271 27.557 352 212 13 58 386 11 342 1.48e-26 108
Msa1232010 MtrunA17_Chr0c01g0489571 28.889 360 213 15 48 386 5 342 2.00e-26 108
Msa1232010 MtrunA17_Chr6g0455661 31.081 222 143 7 168 384 237 453 2.57e-26 110
Msa1232010 MtrunA17_Chr6g0455661 51.111 90 40 3 68 157 28 113 2.07e-17 83.6
Msa1232010 MtrunA17_Chr3g0112821 28.698 338 211 13 71 391 30 354 3.80e-26 108
Msa1232010 MtrunA17_Chr3g0093031 27.989 368 228 14 50 391 3 359 5.02e-26 107
Msa1232010 MtrunA17_Chr7g0226931 24.932 365 216 12 71 391 38 388 4.09e-25 105
Msa1232010 MtrunA17_Chr8g0352901 25.676 370 239 12 48 391 3 362 2.45e-24 103
Msa1232010 MtrunA17_Chr5g0440501 29.596 223 142 7 171 383 11 228 3.27e-24 100
Msa1232010 MtrunA17_Chr2g0283531 28.696 345 211 14 71 392 31 363 1.23e-23 101
Msa1232010 MtrunA17_Chr6g0450701 26.316 342 211 11 70 386 38 363 2.33e-23 100
Msa1232010 MtrunA17_Chr4g0057991 25.816 337 212 11 72 386 40 360 1.03e-21 95.9
Msa1232010 MtrunA17_Chr3g0096551 26.562 384 224 15 50 391 3 370 4.62e-21 94.0
Msa1232010 MtrunA17_Chr7g0266061 25.994 327 212 12 68 385 39 344 6.62e-21 93.2
Msa1232010 MtrunA17_Chr3g0112691 26.667 345 212 11 71 391 30 357 1.13e-20 92.4
Msa1232010 MtrunA17_Chr1g0189921 39.844 128 67 2 51 169 11 137 3.41e-20 86.7
Msa1232010 MtrunA17_Chr2g0301571 29.066 289 167 11 121 391 37 305 2.14e-19 88.2
Msa1232010 MtrunA17_Chr1g0178941 27.988 343 184 13 72 385 41 349 2.31e-19 88.6
Msa1232010 MtrunA17_Chr2g0321991 50.000 90 43 2 69 157 31 119 6.95e-19 82.0
Msa1232010 MtrunA17_Chr2g0301551 29.066 289 167 11 121 391 37 305 1.25e-18 85.9
Msa1232010 MtrunA17_Chr1g0198351 26.582 316 194 13 72 375 44 333 2.54e-18 85.5
Msa1232010 MtrunA17_Chr1g0198381 26.032 315 198 13 72 375 3 293 5.33e-18 84.0
Msa1232010 MtrunA17_Chr8g0339251 26.073 303 202 9 48 341 3 292 9.35e-18 83.6
Msa1232010 MtrunA17_Chr2g0301591 31.410 312 163 16 40 329 1 283 1.26e-17 82.4
Msa1232010 MtrunA17_Chr3g0104831 25.461 271 176 8 141 391 31 295 1.41e-17 82.8
Msa1232010 MtrunA17_Chr1g0178931 25.360 347 196 12 72 393 38 346 1.09e-16 80.5
Msa1232010 MtrunA17_Chr4g0018561 57.895 57 24 0 65 121 24 80 1.20e-16 75.1
Msa1232010 MtrunA17_Chr6g0463261 34.959 123 80 0 122 244 2 124 1.34e-16 75.9
Msa1232010 MtrunA17_Chr5g0432081 57.143 56 22 2 330 385 10 63 1.04e-13 66.2
Msa1232010 MtrunA17_Chr8g0370971 41.304 92 50 1 70 157 37 128 2.31e-13 67.8
Msa1232010 MtrunA17_Chr3g0104801 32.051 156 93 4 57 205 30 179 1.21e-11 63.2
Msa1232010 MtrunA17_Chr2g0283541 26.347 167 114 3 235 392 123 289 3.22e-11 63.9
Msa1232010 MtrunA17_Chr2g0308201 41.379 87 50 1 38 124 2 87 3.26e-11 59.3
Msa1232010 MtrunA17_Chr1g0198401 26.994 163 107 7 223 375 92 252 3.86e-11 63.2
Msa1232010 MtrunA17_Chr2g0301561 29.204 226 136 8 121 330 37 254 6.21e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1232010 AT3G16370.1 75.904 332 78 1 62 393 23 352 0.0 527
Msa1232010 AT5G22810.1 60.303 330 127 2 68 394 31 359 4.47e-147 421
Msa1232010 AT5G03810.1 56.620 355 151 3 41 394 1 353 3.45e-143 411
Msa1232010 AT5G03820.2 54.595 370 164 3 27 394 18 385 8.43e-142 409
Msa1232010 AT5G03820.1 55.432 359 151 4 43 394 1 357 1.95e-141 407
Msa1232010 AT3G53100.1 51.695 354 167 3 40 393 1 350 5.20e-130 377
Msa1232010 AT5G42170.1 45.625 320 166 3 69 386 48 361 3.79e-100 302
Msa1232010 AT2G04570.1 43.750 320 179 1 69 388 26 344 1.55e-98 297
Msa1232010 AT2G42990.1 41.956 317 183 1 69 385 26 341 2.10e-93 284
Msa1232010 AT3G14820.1 43.789 322 172 5 67 386 28 342 8.75e-93 283
Msa1232010 AT5G45960.1 44.551 312 166 4 69 375 45 354 9.86e-93 283
Msa1232010 AT1G75880.2 44.099 322 179 1 65 386 46 366 4.31e-91 279
Msa1232010 AT1G75900.1 41.124 338 197 2 49 386 21 356 7.20e-91 278
Msa1232010 AT1G75880.1 43.963 323 179 2 65 386 46 367 2.27e-89 275
Msa1232010 AT1G20120.1 42.547 322 184 1 65 386 72 392 2.52e-89 275
Msa1232010 AT1G59406.1 41.159 345 191 6 47 386 4 341 1.15e-88 272
Msa1232010 AT1G59030.1 41.159 345 191 6 47 386 4 341 1.15e-88 272
Msa1232010 AT1G58725.1 41.159 345 191 6 47 386 4 341 1.15e-88 272
Msa1232010 AT1G06990.1 40.062 322 189 3 67 386 33 352 3.44e-88 271
Msa1232010 AT2G30310.1 40.751 346 190 8 52 390 16 353 1.30e-87 270
Msa1232010 AT1G75890.3 37.852 391 225 7 6 382 1 387 4.86e-87 270
Msa1232010 AT1G75890.2 42.675 314 178 2 70 382 46 358 4.86e-87 268
Msa1232010 AT4G26790.1 39.329 328 192 2 59 386 23 343 6.26e-87 268
Msa1232010 AT4G26790.2 39.329 328 192 2 59 386 23 343 6.26e-87 268
Msa1232010 AT2G30220.1 40.390 359 198 8 41 390 1 352 1.45e-86 267
Msa1232010 AT2G40250.1 40.625 320 181 4 69 382 34 350 3.32e-86 266
Msa1232010 AT1G58430.1 39.548 354 205 7 41 387 1 352 1.53e-85 265
Msa1232010 AT2G31540.1 39.326 356 199 8 41 385 1 350 3.58e-85 263
Msa1232010 AT1G58520.3 42.368 321 168 6 69 386 28 334 1.04e-84 261
Msa1232010 AT1G58525.1 42.368 321 168 6 69 386 28 334 1.04e-84 261
Msa1232010 AT2G24560.1 39.377 353 206 6 41 387 1 351 9.18e-84 260
Msa1232010 AT1G75890.1 41.284 327 177 4 70 382 46 371 2.52e-83 259
Msa1232010 AT3G43570.1 39.003 341 169 6 48 386 9 312 5.36e-80 249
Msa1232010 AT5G63170.1 41.613 310 166 3 69 377 26 321 4.95e-79 247
Msa1232010 AT5G45950.1 38.438 320 190 5 69 388 38 350 8.49e-79 247
Msa1232010 AT1G20132.1 37.383 321 200 1 70 390 60 379 6.47e-74 235
Msa1232010 AT1G23500.1 39.031 351 195 5 41 386 1 337 3.81e-70 224
Msa1232010 AT1G20130.2 35.000 340 207 3 65 394 178 513 7.63e-69 226
Msa1232010 AT1G75920.2 36.127 346 208 2 43 386 1 335 1.66e-68 220
Msa1232010 AT1G20130.1 35.000 340 207 3 65 394 198 533 1.76e-68 225
Msa1232010 AT1G20135.1 36.873 339 196 6 40 377 1 322 2.27e-66 214
Msa1232010 AT3G43550.1 38.596 285 166 4 49 330 8 286 6.74e-66 211
Msa1232010 AT1G73610.1 36.335 322 189 3 66 386 30 336 1.22e-65 213
Msa1232010 AT2G24560.2 37.458 299 181 4 41 333 1 299 3.28e-64 208
Msa1232010 AT3G04290.1 34.604 341 214 7 52 388 10 345 2.61e-63 207
Msa1232010 AT1G75920.1 34.366 355 205 3 49 386 2 345 2.04e-62 204
Msa1232010 AT1G29670.1 36.283 339 202 10 50 382 10 340 1.64e-60 200
Msa1232010 AT1G29670.2 36.283 339 202 10 50 382 78 408 4.82e-60 201
Msa1232010 AT5G15720.1 37.346 324 190 9 68 384 27 344 9.37e-60 198
Msa1232010 AT4G10950.2 31.611 329 202 6 68 385 68 384 1.01e-59 199
Msa1232010 AT1G75910.1 34.006 347 214 4 43 386 1 335 1.94e-59 196
Msa1232010 AT2G23540.1 34.639 332 207 6 71 394 48 377 2.27e-59 197
Msa1232010 AT4G28780.1 31.988 347 228 7 48 390 7 349 1.39e-57 192
Msa1232010 AT1G75930.1 33.621 348 214 5 43 386 1 335 2.10e-57 191
Msa1232010 AT4G10950.1 31.307 329 199 7 68 385 68 380 5.21e-57 192
Msa1232010 AT5G33370.1 33.438 320 204 7 71 386 30 344 7.27e-57 191
Msa1232010 AT3G50400.1 33.613 357 225 8 48 394 10 364 1.00e-56 190
Msa1232010 AT5G18430.1 32.399 321 212 3 71 388 28 346 1.20e-56 190
Msa1232010 AT5G08460.1 33.053 357 225 8 37 382 10 363 1.96e-56 190
Msa1232010 AT5G37690.1 34.218 339 208 10 52 385 10 338 4.22e-56 188
Msa1232010 AT1G71691.2 37.072 321 189 10 66 382 50 361 5.06e-56 189
Msa1232010 AT1G29660.1 35.220 318 196 7 69 382 30 341 9.19e-56 187
Msa1232010 AT1G75920.3 32.659 346 189 3 43 386 1 304 1.72e-55 185
Msa1232010 AT1G53920.1 34.270 356 212 11 48 389 17 364 1.18e-54 185
Msa1232010 AT4G18970.1 34.268 321 202 7 66 382 23 338 7.37e-54 182
Msa1232010 AT1G71250.1 33.803 355 218 9 41 382 1 351 2.28e-53 181
Msa1232010 AT4G18970.2 34.268 321 202 7 66 382 23 338 2.68e-53 182
Msa1232010 AT1G33811.1 35.168 327 198 10 65 382 28 349 1.41e-52 179
Msa1232010 AT5G41890.1 32.861 353 213 8 48 386 15 357 1.76e-52 179
Msa1232010 AT5G37690.2 33.432 338 204 10 52 385 10 330 2.55e-52 178
Msa1232010 AT1G75920.4 34.576 295 180 2 94 386 24 307 2.71e-52 177
Msa1232010 AT5G45670.1 31.977 344 225 7 43 382 1 339 3.95e-52 178
Msa1232010 AT1G74460.1 34.375 320 193 10 75 386 27 337 2.01e-50 174
Msa1232010 AT5G55050.1 33.131 329 204 11 69 387 37 359 2.69e-49 171
Msa1232010 AT2G19060.1 35.398 339 186 15 68 393 27 345 4.38e-49 169
Msa1232010 AT2G31550.1 37.383 214 122 5 178 385 2 209 4.03e-48 163
Msa1232010 AT2G19010.1 31.700 347 210 11 43 382 2 328 1.60e-47 166
Msa1232010 AT2G19010.2 31.700 347 210 11 43 382 32 358 3.86e-47 165
Msa1232010 AT2G19050.1 33.229 319 190 10 69 382 29 329 4.54e-47 164
Msa1232010 AT5G40990.1 32.024 331 213 7 71 394 37 362 1.39e-46 164
Msa1232010 AT3G14225.1 31.532 333 216 7 71 394 37 366 9.58e-46 162
Msa1232010 AT1G53940.2 31.653 357 227 9 48 394 15 364 3.72e-45 160
Msa1232010 AT3G14225.2 32.024 331 213 8 71 394 37 362 3.78e-45 160
Msa1232010 AT5G15720.2 37.037 270 159 7 68 330 27 292 9.79e-45 157
Msa1232010 AT1G71120.1 32.609 322 201 8 69 385 29 339 1.76e-44 158
Msa1232010 AT5G33370.2 32.746 284 175 7 56 330 14 290 6.19e-43 153
Msa1232010 AT1G71691.3 36.431 269 160 8 66 330 50 311 1.99e-41 148
Msa1232010 AT1G53990.1 28.771 358 223 11 43 383 1 343 2.51e-38 141
Msa1232010 AT4G16230.1 36.199 221 133 4 69 284 28 245 1.19e-37 137
Msa1232010 AT2G19050.2 33.200 250 156 7 69 316 29 269 2.45e-37 137
Msa1232010 AT5G14450.1 29.243 383 218 13 42 386 4 371 3.23e-36 136
Msa1232010 AT5G15720.3 32.567 261 166 7 131 384 56 313 4.97e-36 134
Msa1232010 AT3G05180.1 30.447 358 204 11 61 388 26 368 4.79e-35 133
Msa1232010 AT4G30140.1 28.000 325 213 9 70 391 32 338 6.35e-35 132
Msa1232010 AT1G71691.1 33.071 254 159 8 133 382 14 260 4.58e-34 128
Msa1232010 AT1G54790.3 27.346 373 231 12 43 388 5 364 9.25e-34 129
Msa1232010 AT1G28580.1 29.700 367 220 14 48 392 20 370 1.23e-33 129
Msa1232010 AT1G53940.1 31.488 289 186 7 48 330 15 297 1.57e-33 127
Msa1232010 AT1G28610.2 30.495 364 208 14 48 386 14 357 3.06e-33 128
Msa1232010 AT1G28570.1 29.412 374 226 13 48 392 3 367 4.28e-33 128
Msa1232010 AT4G01130.1 28.460 383 225 14 42 391 4 370 5.36e-33 127
Msa1232010 AT2G27360.1 29.155 367 223 13 48 392 16 367 1.31e-32 127
Msa1232010 AT1G09390.1 28.228 333 210 10 70 387 36 354 1.39e-32 126
Msa1232010 AT2G03980.2 28.660 321 210 9 70 382 42 351 5.60e-32 124
Msa1232010 AT2G03980.3 28.660 321 210 9 70 382 42 351 5.60e-32 124
Msa1232010 AT2G03980.1 28.660 321 210 9 70 382 42 351 5.60e-32 124
Msa1232010 AT2G03980.4 28.660 321 210 9 70 382 42 351 5.60e-32 124
Msa1232010 AT1G28640.1 28.297 364 231 12 49 391 13 367 7.01e-32 124
Msa1232010 AT1G28650.1 28.333 360 230 12 49 388 15 366 7.73e-32 124
Msa1232010 AT1G67830.1 28.367 349 213 11 64 385 23 361 8.01e-32 124
Msa1232010 AT1G28600.1 28.455 369 219 15 48 391 14 362 8.69e-32 124
Msa1232010 AT3G48460.1 28.701 331 212 11 72 386 39 361 1.20e-31 124
Msa1232010 AT1G56670.1 27.654 358 224 11 48 387 17 357 2.55e-31 122
Msa1232010 AT1G31550.2 28.841 371 217 14 48 392 19 368 5.12e-31 122
Msa1232010 AT1G54030.1 29.283 321 192 11 62 378 48 337 7.36e-30 119
Msa1232010 AT1G54020.2 27.356 329 216 9 69 393 29 338 1.40e-29 118
Msa1232010 AT3G14220.1 28.333 360 224 14 41 389 1 337 2.42e-29 117
Msa1232010 AT1G28590.1 28.763 372 223 14 49 392 12 369 1.49e-28 115
Msa1232010 AT1G28670.1 27.147 361 234 10 49 388 13 365 1.72e-28 115
Msa1232010 AT1G54010.1 26.647 334 217 8 69 393 32 346 2.51e-28 115
Msa1232010 AT3G62280.1 28.358 335 205 11 70 387 35 351 6.98e-28 113
Msa1232010 AT1G31550.1 28.108 370 218 14 48 392 19 365 9.29e-28 113
Msa1232010 AT1G28660.1 27.424 361 232 11 49 388 13 364 2.17e-27 112
Msa1232010 AT1G54000.1 26.062 353 232 11 50 393 14 346 1.79e-26 109
Msa1232010 AT1G28660.2 27.424 361 231 12 49 388 13 363 3.68e-26 108
Msa1232010 AT1G54790.1 25.729 377 237 13 41 388 1 363 5.52e-26 108
Msa1232010 AT3G26430.1 27.989 368 222 13 41 378 1 355 8.36e-26 107
Msa1232010 AT2G04020.1 33.831 201 122 6 70 266 42 235 8.46e-25 102
Msa1232010 AT2G04020.2 33.831 201 122 6 70 266 42 235 1.78e-24 103
Msa1232010 AT3G27950.1 27.035 344 215 12 70 391 31 360 1.88e-24 103
Msa1232010 AT4G01130.2 28.296 311 185 11 42 330 4 298 5.40e-23 99.0
Msa1232010 AT4G01130.3 26.644 289 173 9 135 391 3 284 4.51e-22 95.9
Msa1232010 AT5G45910.1 26.724 348 224 12 71 394 30 370 2.65e-21 94.7
Msa1232010 AT1G54790.2 24.069 403 237 14 41 388 1 389 5.00e-21 94.4
Msa1232010 AT5G03610.1 26.266 316 200 10 72 375 44 338 7.51e-21 93.2
Msa1232010 AT3G09930.2 27.848 316 196 12 72 375 40 335 7.82e-21 93.2
Msa1232010 AT3G09930.1 27.848 316 196 12 72 375 40 335 7.82e-21 93.2
Msa1232010 AT3G14210.1 27.711 332 202 14 71 388 36 343 1.19e-20 93.2
Msa1232010 AT1G28580.2 27.148 291 184 11 121 392 8 289 1.40e-20 91.7
Msa1232010 AT1G56670.2 28.188 298 182 10 48 330 17 297 2.30e-20 90.9
Msa1232010 AT1G54030.2 30.116 259 150 9 62 316 48 279 2.58e-20 91.3
Msa1232010 AT5G03600.2 25.356 351 223 14 41 377 13 338 1.07e-18 87.0
Msa1232010 AT5G03600.1 26.498 317 200 13 69 377 12 303 2.20e-18 85.9
Msa1232010 AT4G16220.1 43.478 115 60 3 43 157 5 114 2.39e-18 84.3
Msa1232010 AT1G54020.1 24.907 269 184 6 126 393 1 252 3.98e-17 81.6
Msa1232010 AT1G54020.5 24.907 269 184 6 126 393 1 252 3.98e-17 81.6
Msa1232010 AT1G54020.3 24.907 269 184 6 126 393 1 252 3.98e-17 81.6
Msa1232010 AT3G62280.2 28.736 261 154 10 70 316 35 277 6.12e-17 81.3
Msa1232010 AT1G54020.4 27.419 186 131 3 198 382 10 192 7.38e-17 79.7
Msa1232010 AT4G16233.1 32.727 110 73 1 279 388 6 114 3.93e-15 72.4
Msa1232010 AT5G03980.1 26.667 225 148 7 170 385 94 310 7.58e-15 75.5
Msa1232010 AT1G28570.3 24.762 210 138 6 197 392 1 204 7.13e-14 70.9
Msa1232010 AT1G28570.2 24.645 211 139 6 196 392 91 295 1.81e-13 71.2
Msa1232010 AT3G14210.2 26.316 228 147 8 169 388 1 215 9.35e-12 65.5
Msa1232010 AT1G28600.2 29.858 211 113 12 48 243 14 204 2.61e-11 63.5
Msa1232010 AT1G28610.1 32.086 187 96 10 48 219 14 184 2.90e-11 63.9

Find 81 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACAAGTTCCTAGTGATTT+TGG 0.126371 8_2:+8298474 None:intergenic
CCTGCTGCAAGGACTTTATT+TGG 0.195553 8_2:-8298967 Msa1232010:CDS
CTCATTCACAAGCTTTATTA+AGG 0.218846 8_2:-8299196 Msa1232010:intron
TATTCTAACTGTTGGGATAA+TGG 0.256406 8_2:+8299399 None:intergenic
GTTCAAAACCCTTCCAATTT+CGG 0.294729 8_2:-8298796 Msa1232010:intron
CTAGAATCATCAGTGAAAAT+AGG 0.300436 8_2:+8298258 None:intergenic
AAAGTGGTGCGTACCGAAAT+TGG 0.301968 8_2:+8298783 None:intergenic
GGCAAGTTGGCTCAGGTTGC+TGG 0.317149 8_2:-8299360 Msa1232010:CDS
ATGCAACTCAGTATGTGTTT+TGG 0.323360 8_2:-8298449 Msa1232010:CDS
GGATTAGGAGCTAGGAAAAT+TGG 0.330733 8_2:-8299021 Msa1232010:CDS
CAGTGTATGCTCAGTATATA+TGG 0.344117 8_2:+8300917 None:intergenic
AACTTTGCTTCAGCTGCATC+TGG 0.352556 8_2:-8300047 Msa1232010:CDS
TCAGGTTGCTGGCAGTAAAA+AGG 0.357625 8_2:-8299349 Msa1232010:CDS
AAGGCTAATTACCCTCCTTA+TGG 0.370041 8_2:-8300705 Msa1232010:CDS
ACGCAGGGCGTGTATGGATT+AGG 0.377710 8_2:-8299036 Msa1232010:intron
AGCTTGTGAATGAGTCTAAC+AGG 0.386460 8_2:+8299205 None:intergenic
TCAGGGAAGAACCTCCTTCT+TGG 0.388520 8_2:-8300074 Msa1232010:CDS
AATCTTCAAAAGCAACTTCC+TGG 0.397330 8_2:-8298865 Msa1232010:CDS
TATCTTAGTCCACAGGCATC+AGG 0.401048 8_2:-8300092 Msa1232010:CDS
CCTTGAAATATTCTAACTGT+TGG 0.403529 8_2:+8299391 None:intergenic
GTACCAGCTATCATAACATT+TGG 0.405659 8_2:-8300777 Msa1232010:CDS
GTTGAAACGCAGGGCGTGTA+TGG 0.408582 8_2:-8299042 Msa1232010:intron
CTTGAAATATTCTAACTGTT+GGG 0.411275 8_2:+8299392 None:intergenic
GGGAAAGGGTGCTGTGGTAC+AGG 0.417817 8_2:-8298528 Msa1232010:CDS
GTGCAAAGCTACCACAAGTT+AGG 0.425459 8_2:+8300811 None:intergenic
GTGACCTCACTTCCACCATT+GGG 0.427280 8_2:-8298997 Msa1232010:CDS
AGTGACCTCACTTCCACCAT+TGG 0.432684 8_2:-8298998 Msa1232010:CDS
TTAGTAAAATCTCTACCATA+AGG 0.435286 8_2:+8300690 None:intergenic
CCAACAGTTAGAATATTTCA+AGG 0.438731 8_2:-8299391 Msa1232010:CDS
CCATGATTGCATTTCATATG+TGG 0.438969 8_2:+8298100 None:intergenic
TCAGTGAAAATAGGAAACTT+TGG 0.439896 8_2:+8298267 None:intergenic
AAAATTATTATACCAATCCT+TGG 0.441731 8_2:-8299266 Msa1232010:CDS
CCGAAAATGACACGTATTGA+AGG 0.454561 8_2:+8300945 None:intergenic
TTTACTAATAAACAACCTAC+TGG 0.460660 8_2:-8300675 Msa1232010:CDS
TTATTTGGTTACCATGAGAA+TGG 0.467168 8_2:-8298952 Msa1232010:CDS
GGCATAGCTCTTATCACATA+AGG 0.479682 8_2:-8298366 Msa1232010:exon
TCTTTGTATGTATTGAGTGC+TGG 0.485192 8_2:-8299306 Msa1232010:CDS
TGCATCTGGTTATGATGAAA+AGG 0.486563 8_2:-8300033 Msa1232010:CDS
GAATATTTCAAGGAATATCA+AGG 0.486768 8_2:-8299381 Msa1232010:CDS
GCTGATAATTTAATTACAGC+AGG 0.495139 8_2:-8298387 Msa1232010:CDS
AGGTGGTAGTTACTCATGTT+AGG 0.495273 8_2:+8300972 None:intergenic
CCACATATGAAATGCAATCA+TGG 0.498015 8_2:-8298100 Msa1232010:three_prime_UTR
TCACCAAATGTTATGATAGC+TGG 0.498295 8_2:+8300774 None:intergenic
CCAAATAAAGTCCTTGCAGC+AGG 0.504382 8_2:+8298967 None:intergenic
GCGTGTATGGATTAGGAGCT+AGG 0.512696 8_2:-8299029 Msa1232010:CDS
AAAGGCTGCATCTATTATCA+AGG 0.521328 8_2:-8299331 Msa1232010:CDS
CAAGGAATATCAAGGCAAGT+TGG 0.527876 8_2:-8299373 Msa1232010:CDS
ATATCAAGGCAAGTTGGCTC+AGG 0.531855 8_2:-8299367 Msa1232010:CDS
GGTGACTCTGCAGTAGATGT+AGG 0.538565 8_2:-8300756 Msa1232010:CDS
GCCTGTGGACTAAGATATGC+AGG 0.541888 8_2:+8300098 None:intergenic
TGCTTGGTTGATCCAAGGAT+TGG 0.542337 8_2:+8299254 None:intergenic
ACTGATCAACAGTGATTGCT+TGG 0.542659 8_2:+8299238 None:intergenic
GTGATTGCTTGGTTGATCCA+AGG 0.549428 8_2:+8299249 None:intergenic
GTATCTTGCTTCCTAACTTG+TGG 0.552323 8_2:-8300822 Msa1232010:CDS
AGGTTCTTCCCTGATGCCTG+TGG 0.556382 8_2:+8300083 None:intergenic
TGGTGCGTACCGAAATTGGA+AGG 0.567451 8_2:+8298787 None:intergenic
TGGGTTGCCTACCTGCTGCA+AGG 0.568781 8_2:-8298978 Msa1232010:CDS
AAGCAAAGTTAGCACCAAGA+AGG 0.572551 8_2:+8300060 None:intergenic
ACCTGCATATCTTAGTCCAC+AGG 0.573584 8_2:-8300099 Msa1232010:CDS
ACTTGATTAGCAGCTTCTGA+AGG 0.575330 8_2:+8298414 None:intergenic
TTGCGACACAACCATTCTCA+TGG 0.578404 8_2:+8298941 None:intergenic
GTAAAATCTCTACCATAAGG+AGG 0.579599 8_2:+8300693 None:intergenic
GAGAATAGATAAATAATGAT+CGG 0.584988 8_2:+8298342 None:intergenic
ATCTTAGTCCACAGGCATCA+GGG 0.598385 8_2:-8300091 Msa1232010:CDS
GCAGGTAGGCAACCCAATGG+TGG 0.601772 8_2:+8298985 None:intergenic
TTGTGCAATCCAAAATCACT+AGG 0.603517 8_2:-8298483 Msa1232010:CDS
CAAAGTTAGCACCAAGAAGG+AGG 0.606423 8_2:+8300063 None:intergenic
TAAAATCTCTACCATAAGGA+GGG 0.614379 8_2:+8300694 None:intergenic
CCATTGCAAAACCTCCCAGT+AGG 0.621346 8_2:+8300660 None:intergenic
TTACTAATAAACAACCTACT+GGG 0.623210 8_2:-8300674 Msa1232010:CDS
GCAACCCAATGGTGGAAGTG+AGG 0.623756 8_2:+8298993 None:intergenic
AGAATCAACACTGATGCACA+AGG 0.629785 8_2:-8298919 Msa1232010:CDS
GGTGCGTACCGAAATTGGAA+GGG 0.645311 8_2:+8298788 None:intergenic
AAAATCACAATCTTTAGACC+AGG 0.647895 8_2:+8298847 None:intergenic
CTAATAAACAACCTACTGGG+AGG 0.651293 8_2:-8300671 Msa1232010:CDS
GCAGCAGGTAGGCAACCCAA+TGG 0.651520 8_2:+8298982 None:intergenic
GAGGCAGGGAAAGGGTGCTG+TGG 0.662542 8_2:-8298534 Msa1232010:CDS
AAAATGACACGTATTGAAGG+AGG 0.671205 8_2:+8300948 None:intergenic
CACGTATTGAAGGAGGAAGG+TGG 0.679092 8_2:+8300955 None:intergenic
TGACACGTATTGAAGGAGGA+AGG 0.690350 8_2:+8300952 None:intergenic
ATAAAGTCCTTGCAGCAGGT+AGG 0.698601 8_2:+8298971 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTAGTTTTTTTCAATTA+AGG - chr8_2:8299273-8299292 Msa1232010:CDS 10.0%
!!! AATTTTCAAAAAAATTAAAG+CGG + chr8_2:8299427-8299446 None:intergenic 10.0%
!! GTTTACAATTAGTTATTAAA+TGG - chr8_2:8299508-8299527 Msa1232010:intron 15.0%
!! AGTTCAAACATAATATATAT+AGG + chr8_2:8299576-8299595 None:intergenic 15.0%
!! AAAAATTTGATATACTACTT+AGG + chr8_2:8299949-8299968 None:intergenic 15.0%
!!! AAAATGTACTGTAATATTTT+TGG - chr8_2:8300927-8300946 Msa1232010:CDS 15.0%
!! GTATTGTATCCTTTATTATA+TGG - chr8_2:8298495-8298514 Msa1232010:CDS 20.0%
!!! ACTAGTTTATAAGTATGAAA+TGG - chr8_2:8299225-8299244 Msa1232010:CDS 20.0%
!!! TTTTGTTATGAACTTGTTTT+TGG - chr8_2:8299619-8299638 Msa1232010:intron 20.0%
!! AAAATTATTATACCAATCCT+TGG - chr8_2:8299801-8299820 Msa1232010:intron 20.0%
!! ACATATTTCAGTTTATCTAA+TGG + chr8_2:8299975-8299994 None:intergenic 20.0%
!! CTATATAGAACATCATAAAA+AGG + chr8_2:8300505-8300524 None:intergenic 20.0%
!!! CTTTTTATGATGTTCTATAT+AGG - chr8_2:8300503-8300522 Msa1232010:intron 20.0%
!! GAGAATAGATAAATAATGAT+CGG + chr8_2:8300728-8300747 None:intergenic 20.0%
!!! ATATTTTTGGTAGTTTGTTT+TGG - chr8_2:8300940-8300959 Msa1232010:CDS 20.0%
!!! TAATTAGCCTTAAAAAGAGT+AGG + chr8_2:8298353-8298372 None:intergenic 25.0%
! TTAGTAAAATCTCTACCATA+AGG + chr8_2:8298380-8298399 None:intergenic 25.0%
! TTTACTAATAAACAACCTAC+TGG - chr8_2:8298392-8298411 Msa1232010:CDS 25.0%
! TTACTAATAAACAACCTACT+GGG - chr8_2:8298393-8298412 Msa1232010:CDS 25.0%
! AAATGTATCGTAGATTTGAT+TGG - chr8_2:8298656-8298675 Msa1232010:intron 25.0%
! CATATAAGTTTCATTGATGT+TGG - chr8_2:8298900-8298919 Msa1232010:CDS 25.0%
!!! GTAGAGTTTTGTAAAATTAG+CGG - chr8_2:8299198-8299217 Msa1232010:CDS 25.0%
!!! TTTTTTTCAATTAAGGCTAC+AGG - chr8_2:8299280-8299299 Msa1232010:CDS 25.0%
!!! TTTTTTCAATTAAGGCTACA+GGG - chr8_2:8299281-8299300 Msa1232010:CDS 25.0%
! ACTATTTGAACTAAGCTATA+AGG - chr8_2:8299335-8299354 Msa1232010:CDS 25.0%
! AAGCTATAAGTTCAAATATG+TGG - chr8_2:8299368-8299387 Msa1232010:CDS 25.0%
! TGTTTGAACTTATATCTGTT+TGG - chr8_2:8299586-8299605 Msa1232010:intron 25.0%
! CTTGAAATATTCTAACTGTT+GGG + chr8_2:8299678-8299697 None:intergenic 25.0%
! GAATATTTCAAGGAATATCA+AGG - chr8_2:8299686-8299705 Msa1232010:intron 25.0%
!!! CCACTTTTATCTCAAATTAA+CGG - chr8_2:8300300-8300319 Msa1232010:intron 25.0%
! TGCAATAACAAAATCAGTTT+AGG + chr8_2:8300336-8300355 None:intergenic 25.0%
! TATTATCTTGTCCTTATGTT+GGG + chr8_2:8300444-8300463 None:intergenic 25.0%
! TTATTATCTTGTCCTTATGT+TGG + chr8_2:8300445-8300464 None:intergenic 25.0%
! TGTTCATCATTTTCTGCTTT+TGG + chr8_2:8298193-8298212 None:intergenic 30.0%
! TTACCTTCCTACTCTTTTTA+AGG - chr8_2:8298343-8298362 Msa1232010:three_prime_UTR 30.0%
TAAAATCTCTACCATAAGGA+GGG + chr8_2:8298376-8298395 None:intergenic 30.0%
!!! AAGTTAGCTACTGATTTTAC+AGG - chr8_2:8298431-8298450 Msa1232010:CDS 30.0%
CATGGAAGACCATATAATAA+AGG + chr8_2:8298507-8298526 None:intergenic 30.0%
AACCAACATTGAGATTTCAA+TGG + chr8_2:8298535-8298554 None:intergenic 30.0%
!! TCAATGTTGGTTTAACCTAA+CGG - chr8_2:8298543-8298562 Msa1232010:CDS 30.0%
CAGCTATTAGATTAATCCAA+CGG - chr8_2:8298584-8298603 Msa1232010:intron 30.0%
TTCAAATAAATCTTAGCCGT+TGG + chr8_2:8298603-8298622 None:intergenic 30.0%
AACGGCTAAGATTTATTTGA+AGG - chr8_2:8298602-8298621 Msa1232010:intron 30.0%
ACGGCTAAGATTTATTTGAA+GGG - chr8_2:8298603-8298622 Msa1232010:intron 30.0%
TAAGATTTATTTGAAGGGGA+TGG - chr8_2:8298608-8298627 Msa1232010:intron 30.0%
TGGATTACACTATCAAATCT+AGG - chr8_2:8298676-8298695 Msa1232010:intron 30.0%
CTTTCTTTCTCTAAATCTAG+TGG - chr8_2:8298793-8298812 Msa1232010:intron 30.0%
CCACTATAAGCTAACTTATT+AGG + chr8_2:8299142-8299161 None:intergenic 30.0%
! CCTAATAAGTTAGCTTATAG+TGG - chr8_2:8299139-8299158 Msa1232010:intron 30.0%
!!! TGTTTTTGGTTTCTTCCTAT+TGG - chr8_2:8299633-8299652 Msa1232010:intron 30.0%
TATTCTAACTGTTGGGATAA+TGG + chr8_2:8299671-8299690 None:intergenic 30.0%
CCTTGAAATATTCTAACTGT+TGG + chr8_2:8299679-8299698 None:intergenic 30.0%
CCAACAGTTAGAATATTTCA+AGG - chr8_2:8299676-8299695 Msa1232010:intron 30.0%
!! CTCATTCACAAGCTTTATTA+AGG - chr8_2:8299871-8299890 Msa1232010:intron 30.0%
TCAACAAAGAACCAACATTA+GGG + chr8_2:8300010-8300029 None:intergenic 30.0%
TTCAACAAAGAACCAACATT+AGG + chr8_2:8300011-8300030 None:intergenic 30.0%
TTATTTGGTTACCATGAGAA+TGG - chr8_2:8300115-8300134 Msa1232010:CDS 30.0%
AAAATCACAATCTTTAGACC+AGG + chr8_2:8300223-8300242 None:intergenic 30.0%
! CCGTTAATTTGAGATAAAAG+TGG + chr8_2:8300303-8300322 None:intergenic 30.0%
TAATATGAACTGTCTGATCT+TGG - chr8_2:8300356-8300375 Msa1232010:intron 30.0%
CATAAGGACAAGATAATAAC+TGG - chr8_2:8300446-8300465 Msa1232010:intron 30.0%
GCTGATAATTTAATTACAGC+AGG - chr8_2:8300680-8300699 Msa1232010:CDS 30.0%
TCAGTGAAAATAGGAAACTT+TGG + chr8_2:8300803-8300822 None:intergenic 30.0%
CTAGAATCATCAGTGAAAAT+AGG + chr8_2:8300812-8300831 None:intergenic 30.0%
AAAATGACACGTATTGAAGG+AGG + chr8_2:8298122-8298141 None:intergenic 35.0%
!!! CCTTCAATACGTGTCATTTT+CGG - chr8_2:8298122-8298141 Msa1232010:three_prime_UTR 35.0%
!!! CTTCAATACGTGTCATTTTC+GGG - chr8_2:8298123-8298142 Msa1232010:three_prime_UTR 35.0%
CAGTGTATGCTCAGTATATA+TGG + chr8_2:8298153-8298172 None:intergenic 35.0%
GTACCAGCTATCATAACATT+TGG - chr8_2:8298290-8298309 Msa1232010:three_prime_UTR 35.0%
TCACCAAATGTTATGATAGC+TGG + chr8_2:8298296-8298315 None:intergenic 35.0%
! TAGCCTTAAAAAGAGTAGGA+AGG + chr8_2:8298349-8298368 None:intergenic 35.0%
GTAAAATCTCTACCATAAGG+AGG + chr8_2:8298377-8298396 None:intergenic 35.0%
ACATTGAGATTTCAATGGAG+AGG + chr8_2:8298530-8298549 None:intergenic 35.0%
CTCCATTGAAATCTCAATGT+TGG - chr8_2:8298530-8298549 Msa1232010:CDS 35.0%
GAATTGAAATATCAGCCGTT+AGG + chr8_2:8298561-8298580 None:intergenic 35.0%
CGGCTAAGATTTATTTGAAG+GGG - chr8_2:8298604-8298623 Msa1232010:intron 35.0%
TTTATTTGAAGGGGATGGAA+AGG - chr8_2:8298613-8298632 Msa1232010:intron 35.0%
ACGATACATTTCCACAAGAT+TGG + chr8_2:8298647-8298666 None:intergenic 35.0%
GGATACATTTCCACAAGATT+TGG - chr8_2:8298697-8298716 Msa1232010:intron 35.0%
! TTCCACAAGATTTGGTTGAA+TGG - chr8_2:8298705-8298724 Msa1232010:intron 35.0%
! AAGATTTGGTTGAATGGACT+TGG - chr8_2:8298711-8298730 Msa1232010:intron 35.0%
CAATATGGTCTACAGCAATA+GGG + chr8_2:8298820-8298839 None:intergenic 35.0%
TGCATCTGGTTATGATGAAA+AGG - chr8_2:8299034-8299053 Msa1232010:intron 35.0%
! GATGTTATTTAAGTCGTGCT+TGG - chr8_2:8299100-8299119 Msa1232010:intron 35.0%
GAACTAAGCTATAAGGCATA+AGG - chr8_2:8299342-8299361 Msa1232010:CDS 35.0%
AGTTTCAATAAGGGTCAGTT+TGG + chr8_2:8299398-8299417 None:intergenic 35.0%
! CGGCTTGATAGTTTCAATAA+GGG + chr8_2:8299407-8299426 None:intergenic 35.0%
AGGAGAAATCAAGTTACTAG+AGG + chr8_2:8299556-8299575 None:intergenic 35.0%
AAAGGCTGCATCTATTATCA+AGG - chr8_2:8299736-8299755 Msa1232010:intron 35.0%
TCTTTGTATGTATTGAGTGC+TGG - chr8_2:8299761-8299780 Msa1232010:intron 35.0%
AATGCAAACAACCCTAATGT+TGG - chr8_2:8299996-8300015 Msa1232010:intron 35.0%
AATCTTCAAAAGCAACTTCC+TGG - chr8_2:8300202-8300221 Msa1232010:intron 35.0%
! TTTTGAACAAGGTCAAAGAG+AGG + chr8_2:8300259-8300278 None:intergenic 35.0%
!!! AATTGGAAGGGTTTTGAACA+AGG + chr8_2:8300270-8300289 None:intergenic 35.0%
GTTCAAAACCCTTCCAATTT+CGG - chr8_2:8300271-8300290 Msa1232010:intron 35.0%
! AAATCAGTTTAGGATGACCT+CGG + chr8_2:8300326-8300345 None:intergenic 35.0%
!!! AATGTTTTTTCTCCACTGCA+CGG - chr8_2:8300409-8300428 Msa1232010:intron 35.0%
! GTTCTATATAGGTTTTGCTG+AGG - chr8_2:8300514-8300533 Msa1232010:intron 35.0%
TTGTGCAATCCAAAATCACT+AGG - chr8_2:8300584-8300603 Msa1232010:intron 35.0%
! GAACAAGTTCCTAGTGATTT+TGG + chr8_2:8300596-8300615 None:intergenic 35.0%
! ATGCAACTCAGTATGTGTTT+TGG - chr8_2:8300618-8300637 Msa1232010:intron 35.0%
! TGCAACTCAGTATGTGTTTT+GGG - chr8_2:8300619-8300638 Msa1232010:intron 35.0%
CCATGATTGCATTTCATATG+TGG + chr8_2:8300970-8300989 None:intergenic 35.0%
CCACATATGAAATGCAATCA+TGG - chr8_2:8300967-8300986 Msa1232010:CDS 35.0%
AGGTGGTAGTTACTCATGTT+AGG + chr8_2:8298098-8298117 None:intergenic 40.0%
CCGAAAATGACACGTATTGA+AGG + chr8_2:8298125-8298144 None:intergenic 40.0%
GTATCTTGCTTCCTAACTTG+TGG - chr8_2:8298245-8298264 Msa1232010:three_prime_UTR 40.0%
AAGGCTAATTACCCTCCTTA+TGG - chr8_2:8298362-8298381 Msa1232010:exon 40.0%
CTAATAAACAACCTACTGGG+AGG - chr8_2:8298396-8298415 Msa1232010:CDS 40.0%
CATTTCCACAAGATTGGACT+TGG + chr8_2:8298641-8298660 None:intergenic 40.0%
GTCCATTCAACCAAATCTTG+TGG + chr8_2:8298710-8298729 None:intergenic 40.0%
GCGCATCTCTCTAAATGTAT+CGG + chr8_2:8298774-8298793 None:intergenic 40.0%
GCAATATGGTCTACAGCAAT+AGG + chr8_2:8298821-8298840 None:intergenic 40.0%
AGACCATATTGCAGATGAAG+AGG - chr8_2:8298829-8298848 Msa1232010:CDS 40.0%
GATCCTCTTCATCTGCAATA+TGG + chr8_2:8298835-8298854 None:intergenic 40.0%
! TCTTTTGCAGCTGAAACACT+TGG - chr8_2:8298930-8298949 Msa1232010:CDS 40.0%
! CTTTTGCAGCTGAAACACTT+GGG - chr8_2:8298931-8298950 Msa1232010:CDS 40.0%
AAGCAAAGTTAGCACCAAGA+AGG + chr8_2:8299010-8299029 None:intergenic 40.0%
!! TATAGTGGATGAGCTGATAG+CGG - chr8_2:8299154-8299173 Msa1232010:intron 40.0%
! GCGGCTTGATAGTTTCAATA+AGG + chr8_2:8299408-8299427 None:intergenic 40.0%
CAAGGAATATCAAGGCAAGT+TGG - chr8_2:8299694-8299713 Msa1232010:intron 40.0%
ACTGATCAACAGTGATTGCT+TGG + chr8_2:8299832-8299851 None:intergenic 40.0%
AGCTTGTGAATGAGTCTAAC+AGG + chr8_2:8299865-8299884 None:intergenic 40.0%
! TTGGTTCTTTGTTGAAACGC+AGG - chr8_2:8300015-8300034 Msa1232010:intron 40.0%
TGGTTCTTTGTTGAAACGCA+GGG - chr8_2:8300016-8300035 Msa1232010:intron 40.0%
GGATTAGGAGCTAGGAAAAT+TGG - chr8_2:8300046-8300065 Msa1232010:CDS 40.0%
AGAATCAACACTGATGCACA+AGG - chr8_2:8300148-8300167 Msa1232010:intron 40.0%
TTATCTCAAATTAACGGCCG+AGG - chr8_2:8300306-8300325 Msa1232010:intron 40.0%
! TATATAGGTTTTGCTGAGGC+AGG - chr8_2:8300518-8300537 Msa1232010:intron 40.0%
! ATATAGGTTTTGCTGAGGCA+GGG - chr8_2:8300519-8300538 Msa1232010:intron 40.0%
ACTTGATTAGCAGCTTCTGA+AGG + chr8_2:8300656-8300675 None:intergenic 40.0%
GGCATAGCTCTTATCACATA+AGG - chr8_2:8300701-8300720 Msa1232010:CDS 40.0%
TGACACGTATTGAAGGAGGA+AGG + chr8_2:8298118-8298137 None:intergenic 45.0%
GTGCAAAGCTACCACAAGTT+AGG + chr8_2:8298259-8298278 None:intergenic 45.0%
GAGATTTCAATGGAGAGGCA+TGG + chr8_2:8298525-8298544 None:intergenic 45.0%
AGGATCCAAGTCCAATCTTG+TGG - chr8_2:8298633-8298652 Msa1232010:intron 45.0%
TAACATCGCTGCAGGTATAG+AGG + chr8_2:8298739-8298758 None:intergenic 45.0%
TACAACTGTAACATCGCTGC+AGG + chr8_2:8298747-8298766 None:intergenic 45.0%
TGCAGCGATGTTACAGTTGT+AGG - chr8_2:8298746-8298765 Msa1232010:intron 45.0%
ATCCAAGTCCTACCTTAGGT+TGG - chr8_2:8298852-8298871 Msa1232010:CDS 45.0%
CATCTACTCCAACCTAAGGT+AGG + chr8_2:8298863-8298882 None:intergenic 45.0%
GCAACATCTACTCCAACCTA+AGG + chr8_2:8298867-8298886 None:intergenic 45.0%
ACCTGCATATCTTAGTCCAC+AGG - chr8_2:8298968-8298987 Msa1232010:CDS 45.0%
TATCTTAGTCCACAGGCATC+AGG - chr8_2:8298975-8298994 Msa1232010:CDS 45.0%
ATCTTAGTCCACAGGCATCA+GGG - chr8_2:8298976-8298995 Msa1232010:CDS 45.0%
CAAAGTTAGCACCAAGAAGG+AGG + chr8_2:8299007-8299026 None:intergenic 45.0%
AACTTTGCTTCAGCTGCATC+TGG - chr8_2:8299020-8299039 Msa1232010:CDS 45.0%
TGGAATTGCATGCTGCCAAT+AGG + chr8_2:8299651-8299670 None:intergenic 45.0%
! ATATCAAGGCAAGTTGGCTC+AGG - chr8_2:8299700-8299719 Msa1232010:intron 45.0%
! TCAGGTTGCTGGCAGTAAAA+AGG - chr8_2:8299718-8299737 Msa1232010:intron 45.0%
TGCTTGGTTGATCCAAGGAT+TGG + chr8_2:8299816-8299835 None:intergenic 45.0%
GTGATTGCTTGGTTGATCCA+AGG + chr8_2:8299821-8299840 None:intergenic 45.0%
ATAAAGTCCTTGCAGCAGGT+AGG + chr8_2:8300099-8300118 None:intergenic 45.0%
CCAAATAAAGTCCTTGCAGC+AGG + chr8_2:8300103-8300122 None:intergenic 45.0%
CCTGCTGCAAGGACTTTATT+TGG - chr8_2:8300100-8300119 Msa1232010:CDS 45.0%
TTGCGACACAACCATTCTCA+TGG + chr8_2:8300129-8300148 None:intergenic 45.0%
AAAGTGGTGCGTACCGAAAT+TGG + chr8_2:8300287-8300306 None:intergenic 45.0%
! TTACGCGCAGTTTTCGATCT+CGG + chr8_2:8300390-8300409 None:intergenic 45.0%
TTTCTCCACTGCACGGTATT+CGG - chr8_2:8300416-8300435 Msa1232010:intron 45.0%
GGTATTCGGATCCCAACATA+AGG - chr8_2:8300430-8300449 Msa1232010:intron 45.0%
CACGTATTGAAGGAGGAAGG+TGG + chr8_2:8298115-8298134 None:intergenic 50.0%
GGTGACTCTGCAGTAGATGT+AGG - chr8_2:8298311-8298330 Msa1232010:three_prime_UTR 50.0%
CCATTGCAAAACCTCCCAGT+AGG + chr8_2:8298410-8298429 None:intergenic 50.0%
! CCTACTGGGAGGTTTTGCAA+TGG - chr8_2:8298407-8298426 Msa1232010:CDS 50.0%
GAGGATCCAAGTCCTACCTT+AGG - chr8_2:8298848-8298867 Msa1232010:CDS 50.0%
CTCCAACCTAAGGTAGGACT+TGG + chr8_2:8298857-8298876 None:intergenic 50.0%
! GCCTGTGGACTAAGATATGC+AGG + chr8_2:8298972-8298991 None:intergenic 50.0%
TCAGGGAAGAACCTCCTTCT+TGG - chr8_2:8298993-8299012 Msa1232010:CDS 50.0%
!! GCGTGTATGGATTAGGAGCT+AGG - chr8_2:8300038-8300057 Msa1232010:CDS 50.0%
AGTGACCTCACTTCCACCAT+TGG - chr8_2:8300069-8300088 Msa1232010:CDS 50.0%
GTGACCTCACTTCCACCATT+GGG - chr8_2:8300070-8300089 Msa1232010:CDS 50.0%
GGTGCGTACCGAAATTGGAA+GGG + chr8_2:8300282-8300301 None:intergenic 50.0%
TGGTGCGTACCGAAATTGGA+AGG + chr8_2:8300283-8300302 None:intergenic 50.0%
! GTTTTGCTGAGGCAGGGAAA+GGG - chr8_2:8300525-8300544 Msa1232010:intron 50.0%
AGGTTCTTCCCTGATGCCTG+TGG + chr8_2:8298987-8299006 None:intergenic 55.0%
GTTGAAACGCAGGGCGTGTA+TGG - chr8_2:8300025-8300044 Msa1232010:CDS 55.0%
ACGCAGGGCGTGTATGGATT+AGG - chr8_2:8300031-8300050 Msa1232010:CDS 55.0%
! GCAACCCAATGGTGGAAGTG+AGG + chr8_2:8300077-8300096 None:intergenic 55.0%
! GGTTTTGCTGAGGCAGGGAA+AGG - chr8_2:8300524-8300543 Msa1232010:intron 55.0%
! GGCAAGTTGGCTCAGGTTGC+TGG - chr8_2:8299707-8299726 Msa1232010:intron 60.0%
GCAGGTAGGCAACCCAATGG+TGG + chr8_2:8300085-8300104 None:intergenic 60.0%
GCAGCAGGTAGGCAACCCAA+TGG + chr8_2:8300088-8300107 None:intergenic 60.0%
TGGGTTGCCTACCTGCTGCA+AGG - chr8_2:8300089-8300108 Msa1232010:CDS 60.0%
GGGATCCGAATACCGTGCAG+TGG + chr8_2:8300424-8300443 None:intergenic 60.0%
!! GGGAAAGGGTGCTGTGGTAC+AGG - chr8_2:8300539-8300558 Msa1232010:intron 60.0%
!! GAGGCAGGGAAAGGGTGCTG+TGG - chr8_2:8300533-8300552 Msa1232010:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 8298086 8301003 8298086 ID=Msa1232010;Name=Msa1232010
chr8_2 mRNA 8298086 8301003 8298086 ID=Msa1232010-mRNA-1;Parent=Msa1232010;Name=Msa1232010-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|0.8|1|1|1|5|282|394
chr8_2 exon 8298086 8298564 8298086 ID=Msa1232010-mRNA-1:exon:3235;Parent=Msa1232010-mRNA-1
chr8_2 exon 8298797 8299052 8298797 ID=Msa1232010-mRNA-1:exon:3234;Parent=Msa1232010-mRNA-1
chr8_2 exon 8299197 8299430 8299197 ID=Msa1232010-mRNA-1:exon:3233;Parent=Msa1232010-mRNA-1
chr8_2 exon 8300019 8300149 8300019 ID=Msa1232010-mRNA-1:exon:3232;Parent=Msa1232010-mRNA-1
chr8_2 exon 8300637 8301003 8300637 ID=Msa1232010-mRNA-1:exon:3231;Parent=Msa1232010-mRNA-1
chr8_2 CDS 8300637 8301003 8300637 ID=Msa1232010-mRNA-1:cds;Parent=Msa1232010-mRNA-1
chr8_2 CDS 8300019 8300149 8300019 ID=Msa1232010-mRNA-1:cds;Parent=Msa1232010-mRNA-1
chr8_2 CDS 8299197 8299430 8299197 ID=Msa1232010-mRNA-1:cds;Parent=Msa1232010-mRNA-1
chr8_2 CDS 8298797 8299052 8298797 ID=Msa1232010-mRNA-1:cds;Parent=Msa1232010-mRNA-1
chr8_2 CDS 8298368 8298564 8298368 ID=Msa1232010-mRNA-1:cds;Parent=Msa1232010-mRNA-1
chr8_2 three_prime_UTR 8298086 8298367 8298086 ID=Msa1232010-mRNA-1:three_prime_utr;Parent=Msa1232010-mRNA-1
Gene Sequence

>Msa1232010

ATGGCTATGCCTAACATGAGTAACTACCACCTTCCTCCTTCAATACGTGTCATTTTCGGGATTGCCATATATACTGAGCATACACTGAAGAAATACTTAACTCACCAAAAGCAGAAAATGATGAACATGAATAGAAAAGAAACACTTGTTCTACTCATAGTATCTTGCTTCCTAACTTGTGGTAGCTTTGCACAAGATACACTTGTACCAGCTATCATAACATTTGGTGACTCTGCAGTAGATGTAGGAAATAATGATTACCTTCCTACTCTTTTTAAGGCTAATTACCCTCCTTATGGTAGAGATTTTACTAATAAACAACCTACTGGGAGGTTTTGCAATGGCAAGTTAGCTACTGATTTTACAGCTGAAACACTTGGGTTTACGAGTTTTGCACCTGCATATCTTAGTCCACAGGCATCAGGGAAGAACCTCCTTCTTGGTGCTAACTTTGCTTCAGCTGCATCTGGTTATGATGAAAAGGCTGCTACGTTGAATCATGCAATTCCATTATCCCAACAGTTAGAATATTTCAAGGAATATCAAGGCAAGTTGGCTCAGGTTGCTGGCAGTAAAAAGGCTGCATCTATTATCAAGGATTCTTTGTATGTATTGAGTGCTGGCAGCAGTGACTTTGTACAAAATTATTATACCAATCCTTGGATCAACCAAGCAATCACTGTTGATCAGTATTCATCTTACCTGTTAGACTCATTCACAAGCTTTATTAAGGGCGTGTATGGATTAGGAGCTAGGAAAATTGGAGTGACCTCACTTCCACCATTGGGTTGCCTACCTGCTGCAAGGACTTTATTTGGTTACCATGAGAATGGTTGTGTCGCAAGAATCAACACTGATGCACAAGGATTTAACAAGAAAGTCAGCTCAGCTGCATCGAATCTTCAAAAGCAACTTCCTGGTCTAAAGATTGTGATTTTTGATATATACAAACCTCTCTTTGACCTTGTTCAAAACCCTTCCAATTTCGGTTTTGCTGAGGCAGGGAAAGGGTGCTGTGGTACAGGTCTTGTAGAAACAACATCATTATTGTGCAATCCAAAATCACTAGGAACTTGTTCTAATGCAACTCAGTATGTGTTTTGGGACAGTGTTCATCCTTCAGAAGCTGCTAATCAAGTTCTAGCTGATAATTTAATTACAGCAGGCATAGCTCTTATCACATAA
Protein sequence

>Msa1232010

MAMPNMSNYHLPPSIRVIFGIAIYTEHTLKKYLTHQKQKMMNMNRKETLVLLIVSCFLTCGSFAQDTLVPAIITFGDSAVDVGNNDYLPTLFKANYPPYGRDFTNKQPTGRFCNGKLATDFTAETLGFTSFAPAYLSPQASGKNLLLGANFASAASGYDEKAATLNHAIPLSQQLEYFKEYQGKLAQVAGSKKAASIIKDSLYVLSAGSSDFVQNYYTNPWINQAITVDQYSSYLLDSFTSFIKGVYGLGARKIGVTSLPPLGCLPAARTLFGYHENGCVARINTDAQGFNKKVSSAASNLQKQLPGLKIVIFDIYKPLFDLVQNPSNFGFAEAGKGCCGTGLVETTSLLCNPKSLGTCSNATQYVFWDSVHPSEAANQVLADNLITAGIALIT*