AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1313460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1313460 MtrunA17_Chr8g0342061 98.976 586 6 0 45 630 1 586 0.0 1202
Msa1313460 MtrunA17_Chr2g0330251 77.983 595 121 4 45 630 1 594 0.0 961
Msa1313460 MtrunA17_Chr5g0398121 55.203 567 233 7 67 624 20 574 0.0 614
Msa1313460 MtrunA17_Chr1g0203971 51.934 543 246 7 76 614 2 533 0.0 543
Msa1313460 MtrunA17_Chr5g0398141 53.547 437 196 3 193 625 7 440 1.10e-164 478
Msa1313460 MtrunA17_Chr5g0417511 40.238 589 264 12 51 623 15 531 3.21e-130 393
Msa1313460 MtrunA17_Chr4g0000501 41.042 307 140 5 324 626 7 276 5.19e-63 209
Msa1313460 MtrunA17_Chr4g0000491 58.046 174 65 2 99 264 54 227 1.25e-59 200
Msa1313460 MtrunA17_Chr1g0203951 54.930 142 52 3 78 219 10 139 6.06e-44 154
Msa1313460 MtrunA17_Chr5g0398131 68.421 95 30 0 99 193 13 107 2.03e-39 140
Msa1313460 MtrunA17_Chr1g0203961 39.216 204 99 3 341 519 3 206 2.98e-33 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1313460 AT1G72970.1 69.107 560 168 3 75 630 36 594 0.0 780
Msa1313460 AT1G72970.2 66.429 560 156 4 75 630 36 567 0.0 736
Msa1313460 AT1G12570.1 51.552 580 255 9 52 624 9 569 0.0 565
Msa1313460 AT3G56060.1 51.625 554 249 7 76 625 31 569 0.0 547
Msa1313460 AT5G51950.3 49.396 579 271 9 58 623 5 574 0.0 535
Msa1313460 AT5G51950.1 48.881 581 273 8 58 623 5 576 0.0 535
Msa1313460 AT5G51950.2 51.887 530 249 5 99 623 13 541 0.0 535
Msa1313460 AT5G51930.2 50.542 554 255 9 73 623 8 545 2.39e-179 520
Msa1313460 AT5G51930.1 50.278 539 257 7 78 613 52 582 2.52e-173 506
Msa1313460 AT1G73050.1 45.487 554 252 12 78 624 41 551 8.86e-152 449
Msa1313460 AT1G14185.1 42.193 538 229 10 97 622 35 502 6.32e-127 384
Msa1313460 AT1G14190.2 39.587 581 263 13 52 623 3 504 6.75e-127 384
Msa1313460 AT1G14190.1 41.045 536 241 9 97 623 14 483 8.84e-127 384

Find 146 sgRNAs with CRISPR-Local

Find 369 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGTTATGCTTAATTCTA+TGG 0.207984 8_4:+11398389 Msa1313460:CDS
CTCAATGTATATACCTTTCT+TGG 0.222864 8_4:-11403936 None:intergenic
TTATACTCTCAATCTTTAAT+TGG 0.238787 8_4:-11405244 None:intergenic
AAAATAACCCCTATAGCTTT+TGG 0.265030 8_4:-11403647 None:intergenic
AAGACACTGTTATCACAATT+TGG 0.265270 8_4:+11404575 Msa1313460:CDS
CATCAGTTGAAACAAAATAT+TGG 0.276015 8_4:-11399445 None:intergenic
TCCCAACAAAAGGATTATTA+AGG 0.280926 8_4:-11403826 None:intergenic
AACCAGAGGCAGACACTTAT+TGG 0.282197 8_4:+11398282 Msa1313460:CDS
GGTAGTTAGTCCTGATTATA+AGG 0.296398 8_4:+11404627 Msa1313460:CDS
GCTGCCGAACTTCTTGCTTC+TGG 0.307768 8_4:+11403249 Msa1313460:CDS
AAATGAATTTAGTTTATTCT+TGG 0.310448 8_4:+11405020 Msa1313460:three_prime_UTR
TTCTGAAGAAATGTTACATT+TGG 0.311997 8_4:-11399380 None:intergenic
GAGAGACTCCATTGTCTATA+AGG 0.313156 8_4:-11403143 None:intergenic
TTCACCTATGATCATATATA+TGG 0.316069 8_4:+11403177 Msa1313460:CDS
GATGGAAAGTAACAACTTCT+AGG 0.318864 8_4:-11405281 None:intergenic
GGAAGATTGGCTGGTATATA+AGG 0.322423 8_4:+11404874 Msa1313460:CDS
AAGTTCTGAAGTTCAACTTT+AGG 0.335800 8_4:-11403788 None:intergenic
CCCTGACAAACTGACTGTTT+TGG 0.340997 8_4:+11403275 Msa1313460:CDS
TGTTCCATATATATGATCAT+AGG 0.344794 8_4:-11403181 None:intergenic
GAGAGATAGGTTGGGAAGAT+TGG 0.344950 8_4:+11404861 Msa1313460:CDS
CCACTTAGCAATAGCATTTG+AGG 0.351329 8_4:-11403758 None:intergenic
AAAACAGTTGGATGTAGAAT+TGG 0.351762 8_4:+11404997 Msa1313460:three_prime_UTR
TCATAGGTGAAACCATTAAA+AGG 0.352465 8_4:-11403165 None:intergenic
GTAAAAGACCAAAAGCTATA+GGG 0.355550 8_4:+11403639 Msa1313460:CDS
ATGCTATTGCTAAGTGGAAT+TGG 0.367928 8_4:+11403764 Msa1313460:CDS
ATCAGTTGAAACAAAATATT+GGG 0.367998 8_4:-11399444 None:intergenic
CTTTGAAATGGTGAAAACTT+TGG 0.370638 8_4:-11403105 None:intergenic
GTGGCTTGAGGATTTGTTCC+TGG 0.372285 8_4:-11404703 None:intergenic
ATTGATGTAGTTGAAATTGA+TGG 0.375829 8_4:-11399236 None:intergenic
CACCATTTCAAAGAGCAGTT+AGG 0.377077 8_4:+11403115 Msa1313460:CDS
ACCAAAACAGTCAGTTTGTC+AGG 0.378706 8_4:-11403276 None:intergenic
GGTAAAAGACCAAAAGCTAT+AGG 0.384043 8_4:+11403638 Msa1313460:intron
TGACCAAGCACTGCCAACTT+TGG 0.396020 8_4:-11404290 None:intergenic
GTTGTGTCATTGGCATGTTT+TGG 0.396676 8_4:-11404532 None:intergenic
AGCTTCTATTGATCTTTGCT+TGG 0.406011 8_4:-11404200 None:intergenic
CTCTAGGGAAGTTGTGTCAT+TGG 0.417433 8_4:-11404542 None:intergenic
ACCATTTCAAAGAGCAGTTA+GGG 0.418863 8_4:+11403116 Msa1313460:CDS
ATCATTCCCTTCCCAACAAA+AGG 0.421128 8_4:-11403836 None:intergenic
TCCCTAACTGCTCTTTGAAA+TGG 0.424341 8_4:-11403117 None:intergenic
AGCTTATGATTACATAATAG+TGG 0.425179 8_4:+11399265 Msa1313460:CDS
TGATGAACTGGCCTATTAGA+AGG 0.425489 8_4:-11403887 None:intergenic
GCTTCTATTGATCTTTGCTT+GGG 0.426743 8_4:-11404199 None:intergenic
TATGCTTAATTCTATGGCTA+TGG 0.429582 8_4:+11398395 Msa1313460:CDS
ATATTGTCTAGTGGGGCAAT+TGG 0.437071 8_4:+11403731 Msa1313460:CDS
TGAGATAATGTTGCAGCTAA+AGG 0.437925 8_4:-11399308 None:intergenic
CATATATATGGAACAAAAGT+TGG 0.443993 8_4:+11403189 Msa1313460:CDS
TGTCCAAAGTTGGCAGTGCT+TGG 0.445458 8_4:+11404287 Msa1313460:CDS
TTTATGTTTGTACAGGTACA+TGG 0.453526 8_4:+11404825 Msa1313460:intron
ACATCAAGAACCTTATAATC+AGG 0.455898 8_4:-11404637 None:intergenic
TATTGTCTAGTGGGGCAATT+GGG 0.458461 8_4:+11403732 Msa1313460:CDS
GATAGGTTGGGAAGATTGGC+TGG 0.469904 8_4:+11404865 Msa1313460:CDS
GGCTTTGTCTTGTCCAAAGT+TGG 0.471094 8_4:+11404277 Msa1313460:CDS
AACCAATAAGTGTCTGCCTC+TGG 0.473502 8_4:-11398284 None:intergenic
TGTCTTTGCAGAATTGCTCT+AGG 0.474027 8_4:-11404558 None:intergenic
GTTTCCAGAAGCAAGAAGTT+CGG 0.478164 8_4:-11403253 None:intergenic
ATAGTGGGAGGTGGAACTGC+AGG 0.480876 8_4:+11399281 Msa1313460:CDS
CATACCGGTTGAAGCATTCA+AGG 0.487710 8_4:+11404252 Msa1313460:CDS
TGCAGGTTTATAAACAAGGC+AGG 0.495373 8_4:+11403021 Msa1313460:intron
GTTACATTTGGATTAGTGAA+AGG 0.501737 8_4:-11399368 None:intergenic
TCACAGTAGTCTTCACACTA+AGG 0.504403 8_4:-11404501 None:intergenic
TGTATGAGTGACTGATGAAC+TGG 0.507225 8_4:-11403899 None:intergenic
CCTCCCTTGAATGCTTCAAC+CGG 0.507817 8_4:-11404256 None:intergenic
GTGAAGTGATATTGTCTAGT+GGG 0.511977 8_4:+11403723 Msa1313460:CDS
AAATATTGGGACGCTGAAGT+TGG 0.513818 8_4:-11399431 None:intergenic
GTTGGCAGTGCTTGGTCAGT+AGG 0.515504 8_4:+11404295 Msa1313460:CDS
ATCTGAAGCGCTGCGTCGAA+GGG 0.519425 8_4:+11404392 Msa1313460:CDS
GGAGGTAGTTCTATCAATGC+TGG 0.520008 8_4:+11399500 Msa1313460:CDS
ACTGTAGGTATCACCAAGAA+AGG 0.520351 8_4:+11403923 Msa1313460:CDS
GAAGAATAAGCGAGACATAC+CGG 0.522534 8_4:+11404237 Msa1313460:CDS
AGTGTATTAGTACTTGAAAG+AGG 0.535526 8_4:+11399338 Msa1313460:CDS
CCTCAAATGCTATTGCTAAG+TGG 0.535945 8_4:+11403758 Msa1313460:CDS
AGTGAATGAGTCATACCCTT+GGG 0.537575 8_4:+11403059 Msa1313460:CDS
AGTTTGTGAAGTGTTCTGAC+TGG 0.541458 8_4:-11404438 None:intergenic
ATGGCAGTGAATGCTGCTGT+TGG 0.541836 8_4:-11403981 None:intergenic
TCAAGCCACTGTGATGATGA+TGG 0.542953 8_4:+11404717 Msa1313460:CDS
ACTGTACCAACTGAAGCCAT+TGG 0.544672 8_4:-11398361 None:intergenic
TGAAGCCATTGGAATTTCAC+AGG 0.546339 8_4:-11398350 None:intergenic
GTTTATAAACAAGGCAGGGT+GGG 0.546987 8_4:+11403026 Msa1313460:CDS
TATAGCCTGTGAAATTCCAA+TGG 0.548153 8_4:+11398345 Msa1313460:CDS
GTCTTTGCAGAATTGCTCTA+GGG 0.551481 8_4:-11404557 None:intergenic
AACTTTCTACCTCATTGTCA+AGG 0.552525 8_4:+11398424 Msa1313460:CDS
TCTATTGATCTTTGCTTGGG+AGG 0.552836 8_4:-11404196 None:intergenic
GAAAGAAGAAACTTCTTGAG+AGG 0.553017 8_4:+11398308 Msa1313460:CDS
AGAGGCAGACACTTATTGGT+TGG 0.554580 8_4:+11398286 Msa1313460:CDS
CCAAAACAGTCAGTTTGTCA+GGG 0.555053 8_4:-11403275 None:intergenic
GAAACAACATGAGGCAAGGT+TGG 0.555365 8_4:+11403685 Msa1313460:CDS
ATATATGGAACAAAAGTTGG+TGG 0.555460 8_4:+11403192 Msa1313460:CDS
AGCAGCATTCACTGCCATCA+TGG 0.557126 8_4:+11403986 Msa1313460:CDS
ACGTTGAACCATCGACGACT+CGG 0.557454 8_4:-11404669 None:intergenic
GATCTGAAGCGCTGCGTCGA+AGG 0.557566 8_4:+11404391 Msa1313460:CDS
ACAATTTGCTTCTCAACCCA+AGG 0.558080 8_4:-11403075 None:intergenic
AAAGAAGAAACTTCTTGAGA+GGG 0.563185 8_4:+11398309 Msa1313460:CDS
ACGCAGCGCTTCAGATCGTA+TGG 0.564086 8_4:-11404385 None:intergenic
TGGATGACTGAAGTAGTTGA+AGG 0.572474 8_4:-11404365 None:intergenic
TGGTGGATGTCATGTGGGGA+AGG 0.574542 8_4:+11404606 Msa1313460:CDS
TCAGAACTTCCACATTACCT+TGG 0.575737 8_4:+11399397 Msa1313460:CDS
TACCATGGTGGATGTCATGT+GGG 0.575939 8_4:+11404601 Msa1313460:CDS
TAAAAGACCAAAAGCTATAG+GGG 0.577729 8_4:+11403640 Msa1313460:CDS
GAAATTCCAATGGCTTCAGT+TGG 0.585684 8_4:+11398355 Msa1313460:CDS
GAAGTTCGGCAGCTGTATGT+CGG 0.587570 8_4:-11403239 None:intergenic
ATCACAATTTGGCATTACCA+TGG 0.588471 8_4:+11404586 Msa1313460:CDS
AAGTAGTTGAAGGTAACAGC+AGG 0.592244 8_4:-11404355 None:intergenic
TTATGTTTGTACAGGTACAT+GGG 0.592434 8_4:+11404826 Msa1313460:intron
AAAGGTCTGCCAAGGTAATG+TGG 0.593850 8_4:-11399406 None:intergenic
GTCAGTAGGTGAGCTCAAGT+TGG 0.595081 8_4:+11404309 Msa1313460:CDS
GATTACATAATAGTGGGAGG+TGG 0.596948 8_4:+11399272 Msa1313460:CDS
GCTTATGATTACATAATAGT+GGG 0.598220 8_4:+11399266 Msa1313460:CDS
TAGTGAATGAGTCATACCCT+TGG 0.599585 8_4:+11403058 Msa1313460:CDS
TTACCATGGTGGATGTCATG+TGG 0.600001 8_4:+11404600 Msa1313460:CDS
ATCATCATCACAGTGGCTTG+AGG 0.602679 8_4:-11404715 None:intergenic
CAAGAAAGGTATATACATTG+AGG 0.602724 8_4:+11403937 Msa1313460:CDS
GGCATGCAGGTTTATAAACA+AGG 0.603259 8_4:+11403017 Msa1313460:intron
AGCAGGATTGTCATTCACAT+TGG 0.603483 8_4:-11404338 None:intergenic
AAGAATGAACCTTGACAATG+AGG 0.604252 8_4:-11398433 None:intergenic
ATATACATTGAGGCTAGTAG+TGG 0.605558 8_4:+11403947 Msa1313460:CDS
CACAAAACAAGACCAACCAG+AGG 0.607838 8_4:+11398268 Msa1313460:CDS
CAAGCCACTGTGATGATGAT+GGG 0.617926 8_4:+11404718 Msa1313460:CDS
CAGTCACTCATACAAACTGT+AGG 0.619113 8_4:+11403908 Msa1313460:CDS
AATAAGTGTCTGCCTCTGGT+TGG 0.622203 8_4:-11398280 None:intergenic
GGTTTATAAACAAGGCAGGG+TGG 0.624131 8_4:+11403025 Msa1313460:intron
GGGACGCTGAAGTTGGTGAA+AGG 0.625947 8_4:-11399424 None:intergenic
ACAATTTGGCATTACCATGG+TGG 0.626064 8_4:+11404589 Msa1313460:CDS
ATGGGAAACAACATGAGGCA+AGG 0.628125 8_4:+11403681 Msa1313460:CDS
TAGTGGGAGGTGGAACTGCA+GGG 0.634105 8_4:+11399282 Msa1313460:CDS
TCTATACTAGAGCAAGCTCA+AGG 0.634433 8_4:+11399525 Msa1313460:CDS
TCAACGTTTACTGAATCACC+AGG 0.636189 8_4:+11404685 Msa1313460:CDS
AGTTGGTGAAAGGTCTGCCA+AGG 0.638962 8_4:-11399414 None:intergenic
AGTGAAGTGATATTGTCTAG+TGG 0.640229 8_4:+11403722 Msa1313460:CDS
TGAAGTGATATTGTCTAGTG+GGG 0.641566 8_4:+11403724 Msa1313460:CDS
CAATTTGCTTCTCAACCCAA+GGG 0.641897 8_4:-11403074 None:intergenic
AGGGATAGCCTTATAGACAA+TGG 0.642396 8_4:+11403135 Msa1313460:CDS
GCAGGTTTATAAACAAGGCA+GGG 0.645860 8_4:+11403022 Msa1313460:intron
CAGGTGACATGATACCATGA+TGG 0.646745 8_4:-11404000 None:intergenic
CCGGTTGAAGCATTCAAGGG+AGG 0.653682 8_4:+11404256 Msa1313460:CDS
ATACCGGTTGAAGCATTCAA+GGG 0.659872 8_4:+11404253 Msa1313460:CDS
TATGATTACATAATAGTGGG+AGG 0.665381 8_4:+11399269 Msa1313460:CDS
CCACTGTGATGATGATGGGA+AGG 0.666047 8_4:+11404722 Msa1313460:CDS
TCATGGTATCATGTCACCTG+AGG 0.666139 8_4:+11404003 Msa1313460:CDS
CTGCGTCGAAGGGATCAGCA+TGG 0.676042 8_4:+11404402 Msa1313460:CDS
GTATTAGTACTTGAAAGAGG+TGG 0.684983 8_4:+11399341 Msa1313460:CDS
TGAAAATGGGAAACAACATG+AGG 0.689884 8_4:+11403676 Msa1313460:CDS
TCCCCACATGACATCCACCA+TGG 0.705965 8_4:-11404603 None:intergenic
TCAGAACTTGAATATCTCAG+TGG 0.710333 8_4:+11403802 Msa1313460:CDS
ACCATGGTGGATGTCATGTG+GGG 0.735002 8_4:+11404602 Msa1313460:CDS
AAGGTTAAGAAGTCTCTCTG+CGG 0.750641 8_4:-11404482 None:intergenic
CCTTCCCATCATCATCACAG+TGG 0.775919 8_4:-11404722 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATAATAAAAAAATTTA+GGG - chr8_4:11399979-11399998 None:intergenic 0.0%
!!! TAAGAAAATTTTTCTAATAT+TGG - chr8_4:11399658-11399677 None:intergenic 10.0%
!!! TATTATTTTATTTTTTGACA+CGG - chr8_4:11399918-11399937 None:intergenic 10.0%
!! CAATTTAAAAATAAATAGTT+CGG + chr8_4:11400435-11400454 Msa1313460:intron 10.0%
!!! TAGATTTATATATTTGTTTT+TGG + chr8_4:11400746-11400765 Msa1313460:intron 10.0%
!! NNNNNNNNNTAGGAAAAAAT+TGG - chr8_4:11402042-11402061 None:intergenic 10.0%
!! ATTAAATTCAAAAACTAATA+TGG + chr8_4:11402989-11403008 Msa1313460:intron 10.0%
!!! GTAAAATCTATTTTTTAATT+AGG + chr8_4:11405156-11405175 Msa1313460:three_prime_UTR 10.0%
!!! ATTCTAATCTCTTTAATTTT+TGG + chr8_4:11398578-11398597 Msa1313460:intron 15.0%
!! TTATAAAAATAAGCTGAAAA+CGG - chr8_4:11398874-11398893 None:intergenic 15.0%
!!! ATAGTACTATTTTTATGTTA+TGG - chr8_4:11399012-11399031 None:intergenic 15.0%
!!! TACTTGCTTTTTTAATAAAT+GGG - chr8_4:11399205-11399224 None:intergenic 15.0%
!! TGAATATGTGTAAATAAATT+TGG + chr8_4:11399749-11399768 Msa1313460:intron 15.0%
!! GAATATGTGTAAATAAATTT+GGG + chr8_4:11399750-11399769 Msa1313460:intron 15.0%
!! AATATGTGTAAATAAATTTG+GGG + chr8_4:11399751-11399770 Msa1313460:intron 15.0%
!! AAAATTAATCATCAAAACTA+AGG - chr8_4:11400084-11400103 None:intergenic 15.0%
!! AGAATTTAAGAAAGAAAAAA+TGG + chr8_4:11400919-11400938 Msa1313460:intron 15.0%
!!! CAACTAAATACTTTTTATTT+GGG + chr8_4:11401307-11401326 Msa1313460:intron 15.0%
!!! AACTAAATACTTTTTATTTG+GGG + chr8_4:11401308-11401327 Msa1313460:intron 15.0%
!!! GCTCAAATAATTTTTATTTA+GGG - chr8_4:11401387-11401406 None:intergenic 15.0%
!!! AATATACACTTTTGTTTTTA+AGG - chr8_4:11401872-11401891 None:intergenic 15.0%
!!! ACTTAATTAAATTTTGTTGT+TGG - chr8_4:11402206-11402225 None:intergenic 15.0%
!!! TTTTTTTGGTTACAAAATAT+AGG + chr8_4:11402310-11402329 Msa1313460:intron 15.0%
!! TATAATTGTAAAAAAGATTG+AGG + chr8_4:11402488-11402507 Msa1313460:intron 15.0%
!!! TTAATTTTGATATACACATT+CGG + chr8_4:11402865-11402884 Msa1313460:intron 15.0%
!!! TTATTTTCAATGATGAAAAT+GGG + chr8_4:11403663-11403682 Msa1313460:CDS 15.0%
!!! AAATGAATTTAGTTTATTCT+TGG + chr8_4:11405020-11405039 Msa1313460:three_prime_UTR 15.0%
!!! TTAATTTTTGGTTGCAATTT+TGG + chr8_4:11398590-11398609 Msa1313460:intron 20.0%
!!! CAATTTATCTCAGAATTTTT+AGG + chr8_4:11398642-11398661 Msa1313460:intron 20.0%
!! TAAAAATTGTACAACTAGTT+AGG + chr8_4:11398986-11399005 Msa1313460:intron 20.0%
!!! TACTTTTATTTGTTCTTTTG+TGG + chr8_4:11399045-11399064 Msa1313460:intron 20.0%
!! AGTTAATAAGAGACTAAAAT+TGG + chr8_4:11399143-11399162 Msa1313460:intron 20.0%
!! CTAACAAAAAAATTAATTGC+AGG + chr8_4:11399167-11399186 Msa1313460:intron 20.0%
!!! GTACTTGCTTTTTTAATAAA+TGG - chr8_4:11399206-11399225 None:intergenic 20.0%
!! ATCAGTTGAAACAAAATATT+GGG - chr8_4:11399447-11399466 None:intergenic 20.0%
!! TCATTCAAAATAATGAAAAG+TGG - chr8_4:11399600-11399619 None:intergenic 20.0%
!! ATTTATTATCAAACATGGAA+TGG - chr8_4:11399888-11399907 None:intergenic 20.0%
!! TGTGTATTTATTATCAAACA+TGG - chr8_4:11399893-11399912 None:intergenic 20.0%
!! GTAGTAAATCATTATTGAAA+TGG + chr8_4:11400363-11400382 Msa1313460:intron 20.0%
!! ATTATTACAATAAGACCAAA+GGG + chr8_4:11400471-11400490 Msa1313460:intron 20.0%
!!! ATATTTGTTTTTGGTAACAT+CGG + chr8_4:11400755-11400774 Msa1313460:intron 20.0%
!! ATCAACAAGAAAGTAAAAAA+GGG + chr8_4:11400866-11400885 Msa1313460:intron 20.0%
!! AACAATTAATTCTTAATGGA+AGG - chr8_4:11400953-11400972 None:intergenic 20.0%
!! CCTAAACAATTAATTCTTAA+TGG - chr8_4:11400957-11400976 None:intergenic 20.0%
!! CCATTAAGAATTAATTGTTT+AGG + chr8_4:11400954-11400973 Msa1313460:intron 20.0%
!! ATTAAATTAAATGCTACATG+TGG + chr8_4:11401065-11401084 Msa1313460:intron 20.0%
!! GAAATACATTCATTGTTATA+AGG + chr8_4:11401128-11401147 Msa1313460:intron 20.0%
!!! CATTATTTTTTGAAAGAGAA+GGG + chr8_4:11401267-11401286 Msa1313460:intron 20.0%
!!! ATTATTTTTTGAAAGAGAAG+GGG + chr8_4:11401268-11401287 Msa1313460:intron 20.0%
!!! CCAAATAAAAAGTATTTAGT+TGG - chr8_4:11401309-11401328 None:intergenic 20.0%
!!! CCAACTAAATACTTTTTATT+TGG + chr8_4:11401306-11401325 Msa1313460:intron 20.0%
!!! CGCTCAAATAATTTTTATTT+AGG - chr8_4:11401388-11401407 None:intergenic 20.0%
!!! GACTAAATACTTTTTATTTG+AGG + chr8_4:11401497-11401516 Msa1313460:intron 20.0%
!!! GAATTTTTAAAAAAACTCAC+AGG + chr8_4:11401654-11401673 Msa1313460:intron 20.0%
!! TTTATGTAAGCAACAAAATT+TGG - chr8_4:11401804-11401823 None:intergenic 20.0%
!!! TAATTAGTTTCTCCAAATAT+AGG + chr8_4:11402278-11402297 Msa1313460:intron 20.0%
!! AATTAAGAAGAAAAGAAGTT+TGG - chr8_4:11402347-11402366 None:intergenic 20.0%
!! TAGTTAAATGTATAACAGAA+AGG - chr8_4:11402442-11402461 None:intergenic 20.0%
!!! TCTAGTTTTAATACAATACA+TGG - chr8_4:11402843-11402862 None:intergenic 20.0%
!! TGTTAATCAATCATAATCAT+CGG - chr8_4:11402935-11402954 None:intergenic 20.0%
!! AGTAGAGTATAAAATGTTTA+CGG - chr8_4:11402958-11402977 None:intergenic 20.0%
!!! AAACATTTTATACTCTACTA+AGG + chr8_4:11402959-11402978 Msa1313460:intron 20.0%
!! TCAAAAACTAATATGGAATA+TGG + chr8_4:11402996-11403015 Msa1313460:intron 20.0%
!!! TTGTATCAAAAACAATCTTT+TGG - chr8_4:11403314-11403333 None:intergenic 20.0%
!! AGATAACTTATGACTAAAAT+AGG + chr8_4:11403597-11403616 Msa1313460:intron 20.0%
!!! GTTATTTTCAATGATGAAAA+TGG + chr8_4:11403662-11403681 Msa1313460:CDS 20.0%
!! CACAAAATGAAGTTTAAATA+CGG + chr8_4:11404050-11404069 Msa1313460:intron 20.0%
!! TAATGTATTTATGTTTGTAC+AGG + chr8_4:11404818-11404837 Msa1313460:intron 20.0%
!! AAAAGAAAACAAAAAACAGT+TGG + chr8_4:11404985-11405004 Msa1313460:three_prime_UTR 20.0%
!!! TTATTTTAACCTCTATTTCA+AGG + chr8_4:11405108-11405127 Msa1313460:three_prime_UTR 20.0%
!!! TATTTTAACCTCTATTTCAA+GGG + chr8_4:11405109-11405128 Msa1313460:three_prime_UTR 20.0%
!! TTATACTCTCAATCTTTAAT+TGG - chr8_4:11405247-11405266 None:intergenic 20.0%
!! TCTTGTTATGCTTAATTCTA+TGG + chr8_4:11398389-11398408 Msa1313460:CDS 25.0%
!! TTTCTTTTGTTAGATGATCA+TGG + chr8_4:11398548-11398567 Msa1313460:intron 25.0%
! TTTAGGAAATATACAACTAG+TGG + chr8_4:11398659-11398678 Msa1313460:intron 25.0%
! GTTTATTGTAGCTTATCTAA+TGG + chr8_4:11398782-11398801 Msa1313460:intron 25.0%
! AAACTATCTTATAGCTTACA+TGG + chr8_4:11398914-11398933 Msa1313460:intron 25.0%
! ATTGATGTAGTTGAAATTGA+TGG - chr8_4:11399239-11399258 None:intergenic 25.0%
! AGCTTATGATTACATAATAG+TGG + chr8_4:11399265-11399284 Msa1313460:CDS 25.0%
! GCTTATGATTACATAATAGT+GGG + chr8_4:11399266-11399285 Msa1313460:CDS 25.0%
!! TTCTGAAGAAATGTTACATT+TGG - chr8_4:11399383-11399402 None:intergenic 25.0%
! CATCAGTTGAAACAAAATAT+TGG - chr8_4:11399448-11399467 None:intergenic 25.0%
!!! CAATATTTTGTTTCAACTGA+TGG + chr8_4:11399446-11399465 Msa1313460:CDS 25.0%
! AACAATCTAAAAGAAGAGAA+AGG - chr8_4:11399630-11399649 None:intergenic 25.0%
!!! TCTATTTTTTAGACACCTTT+GGG - chr8_4:11399685-11399704 None:intergenic 25.0%
! TAACTCTAGCATTAAATGTT+CGG - chr8_4:11400024-11400043 None:intergenic 25.0%
! TTATAACTACTTACTACCTA+TGG + chr8_4:11400186-11400205 Msa1313460:intron 25.0%
! ATTTATTATGTGTGTACCAT+AGG - chr8_4:11400205-11400224 None:intergenic 25.0%
! TTTCTTAAAGACATTCAAGA+AGG - chr8_4:11400243-11400262 None:intergenic 25.0%
! AAATAAAAAGTTGCTTGCAT+GGG + chr8_4:11400265-11400284 Msa1313460:intron 25.0%
! CATTATTACAATAAGACCAA+AGG + chr8_4:11400470-11400489 Msa1313460:intron 25.0%
! CTAATTCTATTCTATTTGAC+TGG - chr8_4:11400573-11400592 None:intergenic 25.0%
! TAGAATAGAATTAGAAATCC+TGG + chr8_4:11400579-11400598 Msa1313460:intron 25.0%
! GCAAAATGTTAGTAATTAGA+GGG - chr8_4:11400616-11400635 None:intergenic 25.0%
! TGCAAAATGTTAGTAATTAG+AGG - chr8_4:11400617-11400636 None:intergenic 25.0%
!!! TATTTGTTTTTGGTAACATC+GGG + chr8_4:11400756-11400775 Msa1313460:intron 25.0%
! CATCAACAAGAAAGTAAAAA+AGG + chr8_4:11400865-11400884 Msa1313460:intron 25.0%
!!! AATGACTTTTTCACCAAAAT+TGG - chr8_4:11401161-11401180 None:intergenic 25.0%
!! TTTTGGTGAAAAAGTCATTA+AGG + chr8_4:11401162-11401181 Msa1313460:intron 25.0%
!!! GCATTATTTTTTGAAAGAGA+AGG + chr8_4:11401266-11401285 Msa1313460:intron 25.0%
! TTTACCCAATTAAGCTTAAT+TGG + chr8_4:11401586-11401605 Msa1313460:intron 25.0%
! TACACCAATTAAGCTTAATT+GGG - chr8_4:11401593-11401612 None:intergenic 25.0%
! ATACACCAATTAAGCTTAAT+TGG - chr8_4:11401594-11401613 None:intergenic 25.0%
! ATGCACTCAAATAAAAAAGT+AGG - chr8_4:11401752-11401771 None:intergenic 25.0%
! TTTGAAAATGCTAGAGATAA+AGG - chr8_4:11401943-11401962 None:intergenic 25.0%
! AAAAAGAAACAGCCTATATT+TGG - chr8_4:11402293-11402312 None:intergenic 25.0%
!!! ATAGGCTGTTTCTTTTTTTT+TGG + chr8_4:11402296-11402315 Msa1313460:intron 25.0%
! GAAAACCTAAGAAATGAAAT+TGG + chr8_4:11402716-11402735 Msa1313460:intron 25.0%
! TGCATGTATAACTTTATAAG+TGG - chr8_4:11402769-11402788 None:intergenic 25.0%
!!! AATTGACTCTAAAATTCACT+TGG + chr8_4:11402794-11402813 Msa1313460:intron 25.0%
! TTCACCTATGATCATATATA+TGG + chr8_4:11403177-11403196 Msa1313460:CDS 25.0%
! TGTTCCATATATATGATCAT+AGG - chr8_4:11403184-11403203 None:intergenic 25.0%
! CATATATATGGAACAAAAGT+TGG + chr8_4:11403189-11403208 Msa1313460:CDS 25.0%
!!! AAGATTGTTTTTGATACAAC+AGG + chr8_4:11403315-11403334 Msa1313460:CDS 25.0%
!!! TGAGATTTTGAGTTTTTGAT+TGG + chr8_4:11403451-11403470 Msa1313460:intron 25.0%
! TAGTCATAAGTTATCTTGAA+AGG - chr8_4:11403593-11403612 None:intergenic 25.0%
!! TCCTTAATAATCCTTTTGTT+GGG + chr8_4:11403825-11403844 Msa1313460:CDS 25.0%
! GAAATATTATTACATACCTC+AGG - chr8_4:11404022-11404041 None:intergenic 25.0%
!! TTTTACATGATAAACCAGAT+CGG + chr8_4:11404157-11404176 Msa1313460:intron 25.0%
!!! AAAGAGTAGTTATTTTGAGT+TGG + chr8_4:11405134-11405153 Msa1313460:three_prime_UTR 25.0%
!!! TTTTTGAAAAGCAAGCAAAA+TGG + chr8_4:11405215-11405234 Msa1313460:three_prime_UTR 25.0%
AAAGAAGAAACTTCTTGAGA+GGG + chr8_4:11398309-11398328 Msa1313460:CDS 30.0%
TATGCTTAATTCTATGGCTA+TGG + chr8_4:11398395-11398414 Msa1313460:CDS 30.0%
! TATGATTACATAATAGTGGG+AGG + chr8_4:11399269-11399288 Msa1313460:CDS 30.0%
AGTGTATTAGTACTTGAAAG+AGG + chr8_4:11399338-11399357 Msa1313460:CDS 30.0%
!! GTTACATTTGGATTAGTGAA+AGG - chr8_4:11399371-11399390 None:intergenic 30.0%
! AAATTTTCTTAGACACCCAA+AGG + chr8_4:11399667-11399686 Msa1313460:intron 30.0%
!!! CTCTATTTTTTAGACACCTT+TGG - chr8_4:11399686-11399705 None:intergenic 30.0%
! GTTTTTATCTTCTTATGCAC+AGG + chr8_4:11400104-11400123 Msa1313460:intron 30.0%
! AGGACATAGGGATTTTTAAA+TGG + chr8_4:11400124-11400143 Msa1313460:intron 30.0%
GAAATAAAAAGTTGCTTGCA+TGG + chr8_4:11400264-11400283 Msa1313460:intron 30.0%
ATGGGAAGAAAATAAAACTG+TGG + chr8_4:11400283-11400302 Msa1313460:intron 30.0%
AGAAGAAAGCCAAATACTAA+CGG - chr8_4:11400678-11400697 None:intergenic 30.0%
! GTAGATTTTTCCACGAAAAT+AGG - chr8_4:11400721-11400740 None:intergenic 30.0%
! ATTTTCGTGGAAAAATCTAC+TGG + chr8_4:11400721-11400740 Msa1313460:intron 30.0%
! TTTTCGTGGAAAAATCTACT+GGG + chr8_4:11400722-11400741 Msa1313460:intron 30.0%
CATAAATGTCACCAATACAA+GGG - chr8_4:11401004-11401023 None:intergenic 30.0%
ACATAAATGTCACCAATACA+AGG - chr8_4:11401005-11401024 None:intergenic 30.0%
ATGTTTGCACATTTCTTAGA+CGG + chr8_4:11401021-11401040 Msa1313460:intron 30.0%
ATATTTCCTAATAAGGACCA+TGG - chr8_4:11401201-11401220 None:intergenic 30.0%
GTGGTTCATATTTCCTAATA+AGG - chr8_4:11401208-11401227 None:intergenic 30.0%
!!! GTTACTTGTACGGTTTTTTA+GGG + chr8_4:11401242-11401261 Msa1313460:intron 30.0%
!!! TTACTTGTACGGTTTTTTAG+GGG + chr8_4:11401243-11401262 Msa1313460:intron 30.0%
TGTCCAATTAAATAGGGTTT+AGG + chr8_4:11401334-11401353 Msa1313460:intron 30.0%
GTCCAATTAAATAGGGTTTA+GGG + chr8_4:11401335-11401354 Msa1313460:intron 30.0%
AACCCTAAACCCTATTTAAT+TGG - chr8_4:11401340-11401359 None:intergenic 30.0%
! ATCTCTAGCATTTTCAAAAG+TGG + chr8_4:11401945-11401964 Msa1313460:intron 30.0%
AAAGCAAAAATGTAGCAGTA+TGG - chr8_4:11402624-11402643 None:intergenic 30.0%
GTTCACCAATTTCATTTCTT+AGG - chr8_4:11402724-11402743 None:intergenic 30.0%
!! CTTTGAAATGGTGAAAACTT+TGG - chr8_4:11403108-11403127 None:intergenic 30.0%
TCATAGGTGAAACCATTAAA+AGG - chr8_4:11403168-11403187 None:intergenic 30.0%
ATATATGGAACAAAAGTTGG+TGG + chr8_4:11403192-11403211 Msa1313460:CDS 30.0%
AGTCATTGATAGATATCGAA+TGG - chr8_4:11403495-11403514 None:intergenic 30.0%
GGTATTCAAATCCTAAGTTA+TGG + chr8_4:11403558-11403577 Msa1313460:intron 30.0%
ATCCTAAGTTATGGCATATT+AGG + chr8_4:11403567-11403586 Msa1313460:intron 30.0%
GTAAAAGACCAAAAGCTATA+GGG + chr8_4:11403639-11403658 Msa1313460:CDS 30.0%
TAAAAGACCAAAAGCTATAG+GGG + chr8_4:11403640-11403659 Msa1313460:CDS 30.0%
! AAAATAACCCCTATAGCTTT+TGG - chr8_4:11403650-11403669 None:intergenic 30.0%
!! AAGTTCTGAAGTTCAACTTT+AGG - chr8_4:11403791-11403810 None:intergenic 30.0%
! GTCCTTAATAATCCTTTTGT+TGG + chr8_4:11403824-11403843 Msa1313460:CDS 30.0%
TCCCAACAAAAGGATTATTA+AGG - chr8_4:11403829-11403848 None:intergenic 30.0%
! TAATAATCCTTTTGTTGGGA+AGG + chr8_4:11403829-11403848 Msa1313460:CDS 30.0%
! AATAATCCTTTTGTTGGGAA+GGG + chr8_4:11403830-11403849 Msa1313460:CDS 30.0%
! CAGTTTTTGTTCCTTCTAAT+AGG + chr8_4:11403876-11403895 Msa1313460:CDS 30.0%
CTCAATGTATATACCTTTCT+TGG - chr8_4:11403939-11403958 None:intergenic 30.0%
! CAAGAAAGGTATATACATTG+AGG + chr8_4:11403937-11403956 Msa1313460:CDS 30.0%
AAGACACTGTTATCACAATT+TGG + chr8_4:11404575-11404594 Msa1313460:CDS 30.0%
ACATCAAGAACCTTATAATC+AGG - chr8_4:11404640-11404659 None:intergenic 30.0%
TTTATGTTTGTACAGGTACA+TGG + chr8_4:11404825-11404844 Msa1313460:intron 30.0%
TTATGTTTGTACAGGTACAT+GGG + chr8_4:11404826-11404845 Msa1313460:intron 30.0%
!! AAGATTTTGAGAGATAGGTT+GGG + chr8_4:11404853-11404872 Msa1313460:CDS 30.0%
AAAACAGTTGGATGTAGAAT+TGG + chr8_4:11404997-11405016 Msa1313460:three_prime_UTR 30.0%
!!! TCTTAGCTTTTTGAGTATAG+TGG + chr8_4:11405084-11405103 Msa1313460:three_prime_UTR 30.0%
GAAAGAAGAAACTTCTTGAG+AGG + chr8_4:11398308-11398327 Msa1313460:CDS 35.0%
TATAGCCTGTGAAATTCCAA+TGG + chr8_4:11398345-11398364 Msa1313460:CDS 35.0%
AACTTTCTACCTCATTGTCA+AGG + chr8_4:11398424-11398443 Msa1313460:CDS 35.0%
AAGAATGAACCTTGACAATG+AGG - chr8_4:11398436-11398455 None:intergenic 35.0%
ATACAGAGAGAAAGAGTCTT+TGG + chr8_4:11398748-11398767 Msa1313460:intron 35.0%
TGAGATAATGTTGCAGCTAA+AGG - chr8_4:11399311-11399330 None:intergenic 35.0%
GTATTAGTACTTGAAAGAGG+TGG + chr8_4:11399341-11399360 Msa1313460:CDS 35.0%
! TGATGGAGTTTTCAATGCAA+GGG + chr8_4:11399463-11399482 Msa1313460:CDS 35.0%
GATTACGTAAAGAACAATGC+TGG + chr8_4:11400315-11400334 Msa1313460:intron 35.0%
TTACAATAAGACCAAAGGGT+AGG + chr8_4:11400475-11400494 Msa1313460:intron 35.0%
AGTTTGAAGATGTGACATGT+GGG - chr8_4:11400550-11400569 None:intergenic 35.0%
CTAGGGATATAGTTAAGCAT+AGG - chr8_4:11400652-11400671 None:intergenic 35.0%
!! AGTATTTGGCTTTCTTCTGT+TGG + chr8_4:11400680-11400699 Msa1313460:intron 35.0%
! TTATTAGCTGCCTATTTTCG+TGG + chr8_4:11400708-11400727 Msa1313460:intron 35.0%
TGGTAACATCGGGATATATT+TGG + chr8_4:11400766-11400785 Msa1313460:intron 35.0%
TCCTTTGTTAGTGATTAGGT+AGG + chr8_4:11401088-11401107 Msa1313460:intron 35.0%
TCCTACCTAATCACTAACAA+AGG - chr8_4:11401092-11401111 None:intergenic 35.0%
TTTGTTAGTGATTAGGTAGG+AGG + chr8_4:11401091-11401110 Msa1313460:intron 35.0%
TTGTTAGTGATTAGGTAGGA+GGG + chr8_4:11401092-11401111 Msa1313460:intron 35.0%
GAATGTATTTCCTTCAGATC+TGG - chr8_4:11401119-11401138 None:intergenic 35.0%
! ATAAGGAAAGCCTCCAATTT+TGG + chr8_4:11401145-11401164 Msa1313460:intron 35.0%
!!! GACTTTTTCACCAAAATTGG+AGG - chr8_4:11401158-11401177 None:intergenic 35.0%
TAGATTCCATGGTCCTTATT+AGG + chr8_4:11401192-11401211 Msa1313460:intron 35.0%
ATTAGGAAATATGAACCACC+AGG + chr8_4:11401209-11401228 Msa1313460:intron 35.0%
TTAGGAAATATGAACCACCA+GGG + chr8_4:11401210-11401229 Msa1313460:intron 35.0%
!!! CGTTACTTGTACGGTTTTTT+AGG + chr8_4:11401241-11401260 Msa1313460:intron 35.0%
!!! TACTTGTACGGTTTTTTAGG+GGG + chr8_4:11401244-11401263 Msa1313460:intron 35.0%
GGGTCATGTCCAATTAAATA+GGG + chr8_4:11401328-11401347 Msa1313460:intron 35.0%
TAGCCTAAACATGTAGGTTT+AGG + chr8_4:11401778-11401797 Msa1313460:intron 35.0%
AGATATAGCATAGACAGCAA+AGG - chr8_4:11402168-11402187 None:intergenic 35.0%
GTGAACAGACACTAATTCAT+AGG + chr8_4:11402738-11402757 Msa1313460:intron 35.0%
TAATATGGAATATGGCATGC+AGG + chr8_4:11403004-11403023 Msa1313460:intron 35.0%
ACCATTTCAAAGAGCAGTTA+GGG + chr8_4:11403116-11403135 Msa1313460:CDS 35.0%
! AATGGAGTCTCTCCTTTTAA+TGG + chr8_4:11403153-11403172 Msa1313460:CDS 35.0%
!! GGAACCATTTTTGACAGATT+TGG + chr8_4:11403213-11403232 Msa1313460:CDS 35.0%
TGCAACGACAACTGAAAATT+CGG + chr8_4:11403528-11403547 Msa1313460:intron 35.0%
!!! AGGCAATATCCTATTTTTGC+AGG + chr8_4:11403617-11403636 Msa1313460:intron 35.0%
! GGTCTTTTACCTGCAAAAAT+AGG - chr8_4:11403629-11403648 None:intergenic 35.0%
GGTAAAAGACCAAAAGCTAT+AGG + chr8_4:11403638-11403657 Msa1313460:intron 35.0%
TGAAAATGGGAAACAACATG+AGG + chr8_4:11403676-11403695 Msa1313460:CDS 35.0%
AGTGAAGTGATATTGTCTAG+TGG + chr8_4:11403722-11403741 Msa1313460:CDS 35.0%
GTGAAGTGATATTGTCTAGT+GGG + chr8_4:11403723-11403742 Msa1313460:CDS 35.0%
TGAAGTGATATTGTCTAGTG+GGG + chr8_4:11403724-11403743 Msa1313460:CDS 35.0%
ATGCTATTGCTAAGTGGAAT+TGG + chr8_4:11403764-11403783 Msa1313460:CDS 35.0%
TCAGAACTTGAATATCTCAG+TGG + chr8_4:11403802-11403821 Msa1313460:CDS 35.0%
GGAACAAAAACTGTGTTCAT+AGG - chr8_4:11403869-11403888 None:intergenic 35.0%
ATATACATTGAGGCTAGTAG+TGG + chr8_4:11403947-11403966 Msa1313460:CDS 35.0%
GCTTCTATTGATCTTTGCTT+GGG - chr8_4:11404202-11404221 None:intergenic 35.0%
AGCTTCTATTGATCTTTGCT+TGG - chr8_4:11404203-11404222 None:intergenic 35.0%
ATCACAATTTGGCATTACCA+TGG + chr8_4:11404586-11404605 Msa1313460:CDS 35.0%
GGTAGTTAGTCCTGATTATA+AGG + chr8_4:11404627-11404646 Msa1313460:CDS 35.0%
!! GAGTGAAGATTTTGAGAGAT+AGG + chr8_4:11404848-11404867 Msa1313460:CDS 35.0%
!! GAAGATTTTGAGAGATAGGT+TGG + chr8_4:11404852-11404871 Msa1313460:CDS 35.0%
! CTCTTTTTCCCTTGAAATAG+AGG - chr8_4:11405120-11405139 None:intergenic 35.0%
GATGGAAAGTAACAACTTCT+AGG - chr8_4:11405284-11405303 None:intergenic 35.0%
TGAAGCCATTGGAATTTCAC+AGG - chr8_4:11398353-11398372 None:intergenic 40.0%
GAAATTCCAATGGCTTCAGT+TGG + chr8_4:11398355-11398374 Msa1313460:CDS 40.0%
! GATTACATAATAGTGGGAGG+TGG + chr8_4:11399272-11399291 Msa1313460:CDS 40.0%
TCAGAACTTCCACATTACCT+TGG + chr8_4:11399397-11399416 Msa1313460:CDS 40.0%
AAATATTGGGACGCTGAAGT+TGG - chr8_4:11399434-11399453 None:intergenic 40.0%
! CTGATGGAGTTTTCAATGCA+AGG + chr8_4:11399462-11399481 Msa1313460:CDS 40.0%
! GATGGAGTTTTCAATGCAAG+GGG + chr8_4:11399464-11399483 Msa1313460:CDS 40.0%
! AATGCAAGGGGAAGAGTTTT+AGG + chr8_4:11399476-11399495 Msa1313460:CDS 40.0%
TCTATACTAGAGCAAGCTCA+AGG + chr8_4:11399525-11399544 Msa1313460:CDS 40.0%
TCTTCTTATGCACAGGACAT+AGG + chr8_4:11400111-11400130 Msa1313460:intron 40.0%
CTTCTTATGCACAGGACATA+GGG + chr8_4:11400112-11400131 Msa1313460:intron 40.0%
AAAGATTGTGACCTACCCTT+TGG - chr8_4:11400489-11400508 None:intergenic 40.0%
GAGTTTGAAGATGTGACATG+TGG - chr8_4:11400551-11400570 None:intergenic 40.0%
TAGAGGGAGAAAAGTTAACC+AGG - chr8_4:11400600-11400619 None:intergenic 40.0%
CCAAATACTAACGGTCACTA+GGG - chr8_4:11400669-11400688 None:intergenic 40.0%
ATAGTGAACCACCCTTGTAT+TGG + chr8_4:11400990-11401009 Msa1313460:intron 40.0%
AAATGTCACCAATACAAGGG+TGG - chr8_4:11401001-11401020 None:intergenic 40.0%
GTGGTCCTTTGTTAGTGATT+AGG + chr8_4:11401084-11401103 Msa1313460:intron 40.0%
! AAGGTGCTCTTTAGATTCCA+TGG + chr8_4:11401181-11401200 Msa1313460:intron 40.0%
TAGGAAATATGAACCACCAG+GGG + chr8_4:11401211-11401230 Msa1313460:intron 40.0%
GGCTATTAGCGTTACTTGTA+CGG + chr8_4:11401232-11401251 Msa1313460:intron 40.0%
!! TTTGAAAGAGAAGGGGCATT+AGG + chr8_4:11401275-11401294 Msa1313460:intron 40.0%
!! TTGAAAGAGAAGGGGCATTA+GGG + chr8_4:11401276-11401295 Msa1313460:intron 40.0%
GGGGTCATGTCCAATTAAAT+AGG + chr8_4:11401327-11401346 Msa1313460:intron 40.0%
AGGTTGTGTCCAATCAAGTA+GGG + chr8_4:11401517-11401536 Msa1313460:intron 40.0%
TGTCCAATCAAGTAGGGTTT+AGG + chr8_4:11401523-11401542 Msa1313460:intron 40.0%
GTCCAATCAAGTAGGGTTTA+GGG + chr8_4:11401524-11401543 Msa1313460:intron 40.0%
AACCCTAAACCCTACTTGAT+TGG - chr8_4:11401529-11401548 None:intergenic 40.0%
GATCTCTAGCCTAAACATGT+AGG + chr8_4:11401772-11401791 Msa1313460:intron 40.0%
TGGCCTAAACCTACATGTTT+AGG - chr8_4:11401784-11401803 None:intergenic 40.0%
GCTGCGGTTTAGTAGATATA+TGG + chr8_4:11402014-11402033 Msa1313460:intron 40.0%
TAGCATAGACAGCAAAGGTA+GGG - chr8_4:11402163-11402182 None:intergenic 40.0%
ATAGCATAGACAGCAAAGGT+AGG - chr8_4:11402164-11402183 None:intergenic 40.0%
GCAGTATGGTTATGAACTCT+TGG - chr8_4:11402610-11402629 None:intergenic 40.0%
CGGATCGTTATATACACGAT+TGG - chr8_4:11402915-11402934 None:intergenic 40.0%
GGCATGCAGGTTTATAAACA+AGG + chr8_4:11403017-11403036 Msa1313460:intron 40.0%
TGCAGGTTTATAAACAAGGC+AGG + chr8_4:11403021-11403040 Msa1313460:intron 40.0%
GCAGGTTTATAAACAAGGCA+GGG + chr8_4:11403022-11403041 Msa1313460:intron 40.0%
GTTTATAAACAAGGCAGGGT+GGG + chr8_4:11403026-11403045 Msa1313460:CDS 40.0%
TAGTGAATGAGTCATACCCT+TGG + chr8_4:11403058-11403077 Msa1313460:CDS 40.0%
AGTGAATGAGTCATACCCTT+GGG + chr8_4:11403059-11403078 Msa1313460:CDS 40.0%
! CAATTTGCTTCTCAACCCAA+GGG - chr8_4:11403077-11403096 None:intergenic 40.0%
! ACAATTTGCTTCTCAACCCA+AGG - chr8_4:11403078-11403097 None:intergenic 40.0%
CACCATTTCAAAGAGCAGTT+AGG + chr8_4:11403115-11403134 Msa1313460:CDS 40.0%
! TCCCTAACTGCTCTTTGAAA+TGG - chr8_4:11403120-11403139 None:intergenic 40.0%
!! AGGGATAGCCTTATAGACAA+TGG + chr8_4:11403135-11403154 Msa1313460:CDS 40.0%
GAGAGACTCCATTGTCTATA+AGG - chr8_4:11403146-11403165 None:intergenic 40.0%
GCGACCAAATCTGTCAAAAA+TGG - chr8_4:11403220-11403239 None:intergenic 40.0%
GTTTCCAGAAGCAAGAAGTT+CGG - chr8_4:11403256-11403275 None:intergenic 40.0%
CCAAAACAGTCAGTTTGTCA+GGG - chr8_4:11403278-11403297 None:intergenic 40.0%
ACCAAAACAGTCAGTTTGTC+AGG - chr8_4:11403279-11403298 None:intergenic 40.0%
AACTGAAAATTCGGACTGCA+GGG + chr8_4:11403537-11403556 Msa1313460:intron 40.0%
GGCCTAATATGCCATAACTT+AGG - chr8_4:11403572-11403591 None:intergenic 40.0%
ATATTGTCTAGTGGGGCAAT+TGG + chr8_4:11403731-11403750 Msa1313460:CDS 40.0%
TATTGTCTAGTGGGGCAATT+GGG + chr8_4:11403732-11403751 Msa1313460:CDS 40.0%
CCACTTAGCAATAGCATTTG+AGG - chr8_4:11403761-11403780 None:intergenic 40.0%
CCTCAAATGCTATTGCTAAG+TGG + chr8_4:11403758-11403777 Msa1313460:CDS 40.0%
ATCATTCCCTTCCCAACAAA+AGG - chr8_4:11403839-11403858 None:intergenic 40.0%
! TGATGAACTGGCCTATTAGA+AGG - chr8_4:11403890-11403909 None:intergenic 40.0%
TGTATGAGTGACTGATGAAC+TGG - chr8_4:11403902-11403921 None:intergenic 40.0%
CAGTCACTCATACAAACTGT+AGG + chr8_4:11403908-11403927 Msa1313460:CDS 40.0%
ACTGTAGGTATCACCAAGAA+AGG + chr8_4:11403923-11403942 Msa1313460:CDS 40.0%
TCTATTGATCTTTGCTTGGG+AGG - chr8_4:11404199-11404218 None:intergenic 40.0%
GAAGAATAAGCGAGACATAC+CGG + chr8_4:11404237-11404256 Msa1313460:CDS 40.0%
! ATACCGGTTGAAGCATTCAA+GGG + chr8_4:11404253-11404272 Msa1313460:CDS 40.0%
AGCAGGATTGTCATTCACAT+TGG - chr8_4:11404341-11404360 None:intergenic 40.0%
AAGTAGTTGAAGGTAACAGC+AGG - chr8_4:11404358-11404377 None:intergenic 40.0%
TGGATGACTGAAGTAGTTGA+AGG - chr8_4:11404368-11404387 None:intergenic 40.0%
! AGTTTGTGAAGTGTTCTGAC+TGG - chr8_4:11404441-11404460 None:intergenic 40.0%
AAGGTTAAGAAGTCTCTCTG+CGG - chr8_4:11404485-11404504 None:intergenic 40.0%
TCACAGTAGTCTTCACACTA+AGG - chr8_4:11404504-11404523 None:intergenic 40.0%
!! GTTGTGTCATTGGCATGTTT+TGG - chr8_4:11404535-11404554 None:intergenic 40.0%
GTCTTTGCAGAATTGCTCTA+GGG - chr8_4:11404560-11404579 None:intergenic 40.0%
TGTCTTTGCAGAATTGCTCT+AGG - chr8_4:11404561-11404580 None:intergenic 40.0%
ACAATTTGGCATTACCATGG+TGG + chr8_4:11404589-11404608 Msa1313460:CDS 40.0%
TCAACGTTTACTGAATCACC+AGG + chr8_4:11404685-11404704 Msa1313460:CDS 40.0%
! GGAAGATTGGCTGGTATATA+AGG + chr8_4:11404874-11404893 Msa1313460:CDS 40.0%
CACAAAACAAGACCAACCAG+AGG + chr8_4:11398268-11398287 Msa1313460:CDS 45.0%
AATAAGTGTCTGCCTCTGGT+TGG - chr8_4:11398283-11398302 None:intergenic 45.0%
AACCAGAGGCAGACACTTAT+TGG + chr8_4:11398282-11398301 Msa1313460:CDS 45.0%
AACCAATAAGTGTCTGCCTC+TGG - chr8_4:11398287-11398306 None:intergenic 45.0%
AGAGGCAGACACTTATTGGT+TGG + chr8_4:11398286-11398305 Msa1313460:CDS 45.0%
ACTGTACCAACTGAAGCCAT+TGG - chr8_4:11398364-11398383 None:intergenic 45.0%
AAAGGTCTGCCAAGGTAATG+TGG - chr8_4:11399409-11399428 None:intergenic 45.0%
! GGAGGTAGTTCTATCAATGC+TGG + chr8_4:11399500-11399519 Msa1313460:CDS 45.0%
CCCTAGTGACCGTTAGTATT+TGG + chr8_4:11400666-11400685 Msa1313460:intron 45.0%
GCCAAATACTAACGGTCACT+AGG - chr8_4:11400670-11400689 None:intergenic 45.0%
GAGGTTGTGTCCAATCAAGT+AGG + chr8_4:11401516-11401535 Msa1313460:intron 45.0%
TCTGCAACTAACACATGCTG+CGG + chr8_4:11401998-11402017 Msa1313460:intron 45.0%
GGTTTATAAACAAGGCAGGG+TGG + chr8_4:11403025-11403044 Msa1313460:intron 45.0%
! CCCTGACAAACTGACTGTTT+TGG + chr8_4:11403275-11403294 Msa1313460:CDS 45.0%
CAACTGAAAATTCGGACTGC+AGG + chr8_4:11403536-11403555 Msa1313460:intron 45.0%
ATGGGAAACAACATGAGGCA+AGG + chr8_4:11403681-11403700 Msa1313460:CDS 45.0%
GAAACAACATGAGGCAAGGT+TGG + chr8_4:11403685-11403704 Msa1313460:CDS 45.0%
CAGGTGACATGATACCATGA+TGG - chr8_4:11404003-11404022 None:intergenic 45.0%
TCATGGTATCATGTCACCTG+AGG + chr8_4:11404003-11404022 Msa1313460:CDS 45.0%
TTGTGTGAAGTTGTCCGATC+TGG - chr8_4:11404174-11404193 None:intergenic 45.0%
! CATACCGGTTGAAGCATTCA+AGG + chr8_4:11404252-11404271 Msa1313460:CDS 45.0%
! GGCTTTGTCTTGTCCAAAGT+TGG + chr8_4:11404277-11404296 Msa1313460:CDS 45.0%
! CTCTAGGGAAGTTGTGTCAT+TGG - chr8_4:11404545-11404564 None:intergenic 45.0%
!! TTACCATGGTGGATGTCATG+TGG + chr8_4:11404600-11404619 Msa1313460:CDS 45.0%
!! TACCATGGTGGATGTCATGT+GGG + chr8_4:11404601-11404620 Msa1313460:CDS 45.0%
ATCATCATCACAGTGGCTTG+AGG - chr8_4:11404718-11404737 None:intergenic 45.0%
! TCAAGCCACTGTGATGATGA+TGG + chr8_4:11404717-11404736 Msa1313460:CDS 45.0%
! CAAGCCACTGTGATGATGAT+GGG + chr8_4:11404718-11404737 Msa1313460:CDS 45.0%
! GAGAGATAGGTTGGGAAGAT+TGG + chr8_4:11404861-11404880 Msa1313460:CDS 45.0%
!! CTTTAATAATAAAAAAATTT+AGG - chr8_4:11399980-11399999 None:intergenic 5.0%
!!! TATTTATTTATTTTTAAACT+AGG - chr8_4:11401634-11401653 None:intergenic 5.0%
!!! TAATGATTTATTTAATTTTT+TGG + chr8_4:11402654-11402673 Msa1313460:intron 5.0%
!! AGTTGGTGAAAGGTCTGCCA+AGG - chr8_4:11399417-11399436 None:intergenic 50.0%
!!! GCAAGGGGAAGAGTTTTAGG+TGG + chr8_4:11399479-11399498 Msa1313460:CDS 50.0%
!!! AGGGGAAGAGTTTTAGGTGG+AGG + chr8_4:11399482-11399501 Msa1313460:CDS 50.0%
CAAGTAACGCTAATAGCCCC+TGG - chr8_4:11401230-11401249 None:intergenic 50.0%
GAAGTTCGGCAGCTGTATGT+CGG - chr8_4:11403242-11403261 None:intergenic 50.0%
ATGGCAGTGAATGCTGCTGT+TGG - chr8_4:11403984-11404003 None:intergenic 50.0%
AGCAGCATTCACTGCCATCA+TGG + chr8_4:11403986-11404005 Msa1313460:CDS 50.0%
CCTCCCTTGAATGCTTCAAC+CGG - chr8_4:11404259-11404278 None:intergenic 50.0%
TGTCCAAAGTTGGCAGTGCT+TGG + chr8_4:11404287-11404306 Msa1313460:CDS 50.0%
! TGACCAAGCACTGCCAACTT+TGG - chr8_4:11404293-11404312 None:intergenic 50.0%
GTCAGTAGGTGAGCTCAAGT+TGG + chr8_4:11404309-11404328 Msa1313460:CDS 50.0%
!! ACCATGGTGGATGTCATGTG+GGG + chr8_4:11404602-11404621 Msa1313460:CDS 50.0%
ACGTTGAACCATCGACGACT+CGG - chr8_4:11404672-11404691 None:intergenic 50.0%
! GTGGCTTGAGGATTTGTTCC+TGG - chr8_4:11404706-11404725 None:intergenic 50.0%
CCTTCCCATCATCATCACAG+TGG - chr8_4:11404725-11404744 None:intergenic 50.0%
!! CCACTGTGATGATGATGGGA+AGG + chr8_4:11404722-11404741 Msa1313460:CDS 50.0%
! GATAGGTTGGGAAGATTGGC+TGG + chr8_4:11404865-11404884 Msa1313460:CDS 50.0%
! ATAGTGGGAGGTGGAACTGC+AGG + chr8_4:11399281-11399300 Msa1313460:CDS 55.0%
TAGTGGGAGGTGGAACTGCA+GGG + chr8_4:11399282-11399301 Msa1313460:CDS 55.0%
!! GGGACGCTGAAGTTGGTGAA+AGG - chr8_4:11399427-11399446 None:intergenic 55.0%
GTAGGAGGGTCCAGATCTGA+AGG + chr8_4:11401106-11401125 Msa1313460:intron 55.0%
GTAACGCTAATAGCCCCTGG+TGG - chr8_4:11401227-11401246 None:intergenic 55.0%
GCTGCCGAACTTCTTGCTTC+TGG + chr8_4:11403249-11403268 Msa1313460:CDS 55.0%
! CCGGTTGAAGCATTCAAGGG+AGG + chr8_4:11404256-11404275 Msa1313460:CDS 55.0%
GTTGGCAGTGCTTGGTCAGT+AGG + chr8_4:11404295-11404314 Msa1313460:CDS 55.0%
ACGCAGCGCTTCAGATCGTA+TGG - chr8_4:11404388-11404407 None:intergenic 55.0%
!! ATCTGAAGCGCTGCGTCGAA+GGG + chr8_4:11404392-11404411 Msa1313460:CDS 55.0%
TCCCCACATGACATCCACCA+TGG - chr8_4:11404606-11404625 None:intergenic 55.0%
! TGGTGGATGTCATGTGGGGA+AGG + chr8_4:11404606-11404625 Msa1313460:CDS 55.0%
!! GATCTGAAGCGCTGCGTCGA+AGG + chr8_4:11404391-11404410 Msa1313460:CDS 60.0%
CTGCGTCGAAGGGATCAGCA+TGG + chr8_4:11404402-11404421 Msa1313460:CDS 60.0%
GACAGACTCCGAGTCGTCGA+TGG + chr8_4:11404661-11404680 Msa1313460:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 11398232 11405304 11398232 ID=Msa1313460;Name=Msa1313460
chr8_4 mRNA 11398232 11405304 11398232 ID=Msa1313460-mRNA-1;Parent=Msa1313460;Name=Msa1313460-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|1|0.83|1|1|1|6|410|630
chr8_4 exon 11398232 11398445 11398232 ID=Msa1313460-mRNA-1:exon:4285;Parent=Msa1313460-mRNA-1
chr8_4 exon 11399189 11399546 11399189 ID=Msa1313460-mRNA-1:exon:4286;Parent=Msa1313460-mRNA-1
chr8_4 exon 11403026 11403336 11403026 ID=Msa1313460-mRNA-1:exon:4287;Parent=Msa1313460-mRNA-1
chr8_4 exon 11403639 11404024 11403639 ID=Msa1313460-mRNA-1:exon:4288;Parent=Msa1313460-mRNA-1
chr8_4 exon 11404175 11404743 11404175 ID=Msa1313460-mRNA-1:exon:4289;Parent=Msa1313460-mRNA-1
chr8_4 exon 11404840 11405304 11404840 ID=Msa1313460-mRNA-1:exon:4290;Parent=Msa1313460-mRNA-1
chr8_4 CDS 11398232 11398445 11398232 ID=Msa1313460-mRNA-1:cds;Parent=Msa1313460-mRNA-1
chr8_4 CDS 11399189 11399546 11399189 ID=Msa1313460-mRNA-1:cds;Parent=Msa1313460-mRNA-1
chr8_4 CDS 11403026 11403336 11403026 ID=Msa1313460-mRNA-1:cds;Parent=Msa1313460-mRNA-1
chr8_4 CDS 11403639 11404024 11403639 ID=Msa1313460-mRNA-1:cds;Parent=Msa1313460-mRNA-1
chr8_4 CDS 11404175 11404743 11404175 ID=Msa1313460-mRNA-1:cds;Parent=Msa1313460-mRNA-1
chr8_4 CDS 11404840 11404894 11404840 ID=Msa1313460-mRNA-1:cds;Parent=Msa1313460-mRNA-1
chr8_4 three_prime_UTR 11404895 11405304 11404895 ID=Msa1313460-mRNA-1:three_prime_utr;Parent=Msa1313460-mRNA-1
Gene Sequence

>Msa1313460

ATGCATTATATTTTAAAGTATTTATATGAAGTTACACACAAAACAAGACCAACCAGAGGCAGACACTTATTGGTTGGAAAGAAGAAACTTCTTGAGAGGGTGAGTGCTTTTTCTATAGCCTGTGAAATTCCAATGGCTTCAGTTGGTACAGTCAAATTCTTGTTATGCTTAATTCTATGGCTATGGAACTGCAACTTTCTACCTCATTGTCAAGGTAAACAAGAGTACCCATTTATTAAAAAAGCAAGTACATTTTCATCACCATCAATTTCAACTACATCAATCAACAAAGCTTATGATTACATAATAGTGGGAGGTGGAACTGCAGGGTGTCCTTTAGCTGCAACATTATCTCAAAACTTCAGTGTATTAGTACTTGAAAGAGGTGGTGTTCCTTTCACTAATCCAAATGTAACATTTCTTCAGAACTTCCACATTACCTTGGCAGACCTTTCACCAACTTCAGCGTCCCAATATTTTGTTTCAACTGATGGAGTTTTCAATGCAAGGGGAAGAGTTTTAGGTGGAGGTAGTTCTATCAATGCTGGTTTCTATACTAGAGCAAGCTCAAGGTTTATAAACAAGGCAGGGTGGGATGTCAAGCTAGTGAATGAGTCATACCCTTGGGTTGAGAAGCAAATTGTTCATCGTCCAAAGTTTTCACCATTTCAAAGAGCAGTTAGGGATAGCCTTATAGACAATGGAGTCTCTCCTTTTAATGGTTTCACCTATGATCATATATATGGAACAAAAGTTGGTGGAACCATTTTTGACAGATTTGGTCGCCGACATACAGCTGCCGAACTTCTTGCTTCTGGAAACCCTGACAAACTGACTGTTTTGGTTCATGCTACTGTCCAAAAGATTGTTTTTGATACAACAGGTAAAAGACCAAAAGCTATAGGGGTTATTTTCAATGATGAAAATGGGAAACAACATGAGGCAAGGTTGGTAAATGATATGCAAAGTGAAGTGATATTGTCTAGTGGGGCAATTGGGTCTCCTCAAATGCTATTGCTAAGTGGAATTGGTCCTAAAGTTGAACTTCAGAACTTGAATATCTCAGTGGTCCTTAATAATCCTTTTGTTGGGAAGGGAATGATAGATAATCCTATGAACACAGTTTTTGTTCCTTCTAATAGGCCAGTTCATCAGTCACTCATACAAACTGTAGGTATCACCAAGAAAGGTATATACATTGAGGCTAGTAGTGGATTTAGTCAGTCCAACAGCAGCATTCACTGCCATCATGGTATCATGTCACCTGAGATCGGACAACTTCACACAATTCCTCCCAAGCAAAGATCAATAGAAGCTATTGAAGCTTACAAGAAGAATAAGCGAGACATACCGGTTGAAGCATTCAAGGGAGGCTTTGTCTTGTCCAAAGTTGGCAGTGCTTGGTCAGTAGGTGAGCTCAAGTTGGTCAACACCAATGTGAATGACAATCCTGCTGTTACCTTCAACTACTTCAGTCATCCATACGATCTGAAGCGCTGCGTCGAAGGGATCAGCATGGCAATTAAAGTAGTCCAGTCAGAACACTTCACAAACTACACATTATGTAAAAGAGAAACCGCAGAGAGACTTCTTAACCTTAGTGTGAAGACTACTGTGAACTTCATACCAAAACATGCCAATGACACAACTTCCCTAGAGCAATTCTGCAAAGACACTGTTATCACAATTTGGCATTACCATGGTGGATGTCATGTGGGGAAGGTAGTTAGTCCTGATTATAAGGTTCTTGATGTTGACAGACTCCGAGTCGTCGATGGTTCAACGTTTACTGAATCACCAGGAACAAATCCTCAAGCCACTGTGATGATGATGGGAAGGTACATGGGAGTGAAGATTTTGAGAGATAGGTTGGGAAGATTGGCTGGTATATAA

Protein sequence

>Msa1313460

MHYILKYLYEVTHKTRPTRGRHLLVGKKKLLERVSAFSIACEIPMASVGTVKFLLCLILWLWNCNFLPHCQGKQEYPFIKKASTFSSPSISTTSINKAYDYIIVGGGTAGCPLAATLSQNFSVLVLERGGVPFTNPNVTFLQNFHITLADLSPTSASQYFVSTDGVFNARGRVLGGGSSINAGFYTRASSRFINKAGWDVKLVNESYPWVEKQIVHRPKFSPFQRAVRDSLIDNGVSPFNGFTYDHIYGTKVGGTIFDRFGRRHTAAELLASGNPDKLTVLVHATVQKIVFDTTGKRPKAIGVIFNDENGKQHEARLVNDMQSEVILSSGAIGSPQMLLLSGIGPKVELQNLNISVVLNNPFVGKGMIDNPMNTVFVPSNRPVHQSLIQTVGITKKGIYIEASSGFSQSNSSIHCHHGIMSPEIGQLHTIPPKQRSIEAIEAYKKNKRDIPVEAFKGGFVLSKVGSAWSVGELKLVNTNVNDNPAVTFNYFSHPYDLKRCVEGISMAIKVVQSEHFTNYTLCKRETAERLLNLSVKTTVNFIPKHANDTTSLEQFCKDTVITIWHYHGGCHVGKVVSPDYKVLDVDRLRVVDGSTFTESPGTNPQATVMMMGRYMGVKILRDRLGRLAGI*