AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0545350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0545350 MtrunA17_Chr4g0026061 98.561 139 1 1 1 139 1 138 9.34e-97 274
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0545350 AT1G08380.1 73.427 143 29 4 1 137 1 140 1.63e-66 198

Find 66 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACTTGTAATCTATGATTT+TGG 0.203983 4_1:+35436970 None:intergenic
GATTTCAATGTGATTGGATT+TGG 0.225162 4_1:-35436382 Msa0545350:CDS
CTGTTCATCTCTCTCACTTT+TGG 0.231594 4_1:-35434410 Msa0545350:CDS
TCCTTCCTTTGAAACCAATT+TGG 0.248618 4_1:+35434387 None:intergenic
TAGAAAACAACAATAATAAT+TGG 0.259562 4_1:-35437056 Msa0545350:five_prime_UTR
CTGCTCTTACTTCACCCTTC+TGG 0.272395 4_1:-35436249 Msa0545350:intron
TGAAACCTCAAGTGATTGTT+AGG 0.291393 4_1:-35436803 Msa0545350:CDS
ATCATAGATTACAAGTAAAA+TGG 0.299359 4_1:-35436965 Msa0545350:exon
AAACCCAATCTTATTTCATT+TGG 0.306442 4_1:-35437097 Msa0545350:five_prime_UTR
AAATGAAATAAGATTGGGTT+TGG 0.318175 4_1:+35437099 None:intergenic
ATGGCTGATCTGTTGGCACC+TGG 0.325103 4_1:-35434435 Msa0545350:CDS
GTGATTGGATTTGGGTTGAT+AGG 0.341850 4_1:-35436373 Msa0545350:CDS
AGGAGGGATTTCAATGTGAT+TGG 0.348694 4_1:-35436388 Msa0545350:CDS
ATTTCAATGTGATTGGATTT+GGG 0.350561 4_1:-35436381 Msa0545350:CDS
CCTTCCAAATGAAATAAGAT+TGG 0.355553 4_1:+35437093 None:intergenic
GAAGTAAGAGCAGGAGGAGT+AGG 0.358016 4_1:+35436259 None:intergenic
CAAGGCTGAAAGTAACATAA+AGG 0.369414 4_1:+35434236 None:intergenic
TTGGATTTGGGTTGATAGGT+TGG 0.379649 4_1:-35436369 Msa0545350:CDS
CCCTCCTTAGCCAATCCCTT+TGG 0.402956 4_1:+35436404 None:intergenic
CTTCCAAATGAAATAAGATT+GGG 0.410774 4_1:+35437094 None:intergenic
ATTTACAACATTCATTATGA+AGG 0.429641 4_1:+35434125 None:intergenic
TCTATAGCTGGTATGCTTGA+TGG 0.430936 4_1:+35436340 None:intergenic
AAGTAAGAGCAGGAGGAGTA+GGG 0.437703 4_1:+35436260 None:intergenic
TGGCTGATCTGTTGGCACCT+GGG 0.454791 4_1:-35434434 Msa0545350:CDS
GCCAAATTGGTTTCAAAGGA+AGG 0.457172 4_1:-35434388 Msa0545350:CDS
ATTTGGGTTGATAGGTTGGT+TGG 0.470446 4_1:-35436365 Msa0545350:CDS
CAAGCTATGGCACTTGGAAA+TGG 0.471234 4_1:-35436768 Msa0545350:CDS
AGTGCCATAGCTTGCTTCAA+AGG 0.477357 4_1:+35436777 None:intergenic
TTGAAGCAAGCTATGGCACT+TGG 0.478115 4_1:-35436774 Msa0545350:CDS
ACAACCTTTCCAACCGTCCT+AGG 0.481448 4_1:-35436937 Msa0545350:CDS
CCAATCTTATTTCATTTGGA+AGG 0.482212 4_1:-35437093 Msa0545350:five_prime_UTR
GGCTGATCTGTTGGCACCTG+GGG 0.482909 4_1:-35434433 Msa0545350:CDS
TCAAGCATACCAGCTATAGA+TGG 0.485882 4_1:-35436337 Msa0545350:CDS
TTTACTCATGGTAGATTACA+AGG 0.487388 4_1:+35434218 None:intergenic
TTTGGCCAAATTGGTTTCAA+AGG 0.491678 4_1:-35434392 Msa0545350:CDS
AAGGCTGAAAGTAACATAAA+GGG 0.495180 4_1:+35434237 None:intergenic
GGTGCATCACGTCTCACGTC+AGG 0.505546 4_1:-35436907 Msa0545350:intron
GCAGGTTATGGCTGATCTGT+TGG 0.521700 4_1:-35434442 Msa0545350:intron
TGAGAGAGATGAACAGCCCC+AGG 0.530883 4_1:+35434417 None:intergenic
ATAGTAGCTTCCAAAGGGAT+TGG 0.537863 4_1:-35436414 Msa0545350:intron
CCAACCGTCCTAGGAATGGC+TGG 0.539875 4_1:-35436928 Msa0545350:CDS
CCAGCCATTCCTAGGACGGT+TGG 0.541005 4_1:+35436928 None:intergenic
GTGATGCACCAGCCATTCCT+AGG 0.542585 4_1:+35436920 None:intergenic
ATAGATGGTAAAAGTCTGAC+TGG 0.543316 4_1:-35436322 Msa0545350:CDS
TCCAAAGGGATTGGCTAAGG+AGG 0.546070 4_1:-35436405 Msa0545350:CDS
GCTATGGCACTTGGAAATGG+TGG 0.550754 4_1:-35436765 Msa0545350:CDS
TCCTAGTACGATGGAAAAGG+TGG 0.552747 4_1:+35434166 None:intergenic
CAGAAGGGTGAAGTAAGAGC+AGG 0.557629 4_1:+35436250 None:intergenic
GAATCCTTTGAAGCAAGCTA+TGG 0.559844 4_1:-35436781 Msa0545350:CDS
CTTTCCAACCGTCCTAGGAA+TGG 0.566203 4_1:-35436932 Msa0545350:CDS
GGTGTATAGTAGCTTCCAAA+GGG 0.571319 4_1:-35436419 Msa0545350:intron
GCTTCCAAAGGGATTGGCTA+AGG 0.571506 4_1:-35436408 Msa0545350:CDS
CATTCCTAGGACGGTTGGAA+AGG 0.571757 4_1:+35436933 None:intergenic
CCAAAGGGATTGGCTAAGGA+GGG 0.576763 4_1:-35436404 Msa0545350:CDS
TGGTGTATAGTAGCTTCCAA+AGG 0.596452 4_1:-35436420 Msa0545350:intron
CTATGGCACTTGGAAATGGT+GGG 0.605091 4_1:-35436764 Msa0545350:CDS
AAGGGTGAAGTAAGAGCAGG+AGG 0.608022 4_1:+35436253 None:intergenic
TGCACCAGCCATTCCTAGGA+CGG 0.612860 4_1:+35436924 None:intergenic
GGATTCCTAACAATCACTTG+AGG 0.619263 4_1:+35436798 None:intergenic
CAGATATGTGTGCAAAGTAG+TGG 0.627867 4_1:+35437019 None:intergenic
AGGTGGCAAAGTGTTCTACA+AGG 0.632677 4_1:+35434183 None:intergenic
TATTACTTTGAATTAAACTG+AGG 0.634034 4_1:-35434314 Msa0545350:three_prime_UTR
GAAATGGTGGGAGAGTTACA+TGG 0.656018 4_1:-35436752 Msa0545350:intron
TGGTTTCAAAGGAAGGACTG+AGG 0.666404 4_1:-35434381 Msa0545350:CDS
ATGAAAATGACTAACCAGAA+GGG 0.671062 4_1:+35436235 None:intergenic
ATATGTGTGCAAAGTAGTGG+TGG 0.698145 4_1:+35437022 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCATTTTATTTATTTAAGT+CGG - chr4_1:35434985-35435004 Msa0545350:intron 10.0%
!! TGATCAAATATATAAATTAT+TGG - chr4_1:35435073-35435092 Msa0545350:intron 10.0%
!! TTAAAAAATTTAAGAGTTTA+AGG - chr4_1:35435569-35435588 Msa0545350:intron 10.0%
!!! TATAAGTAATTTTTTTTTGT+AGG - chr4_1:35435629-35435648 Msa0545350:intron 10.0%
!!! ATAAGTAATTTTTTTTTGTA+GGG - chr4_1:35435630-35435649 Msa0545350:intron 10.0%
!!! TTTTATTTTTATTTTTATGG+TGG + chr4_1:35436132-35436151 None:intergenic 10.0%
!!! TTGCATTTAAATATATTTTT+TGG - chr4_1:35436678-35436697 Msa0545350:intron 10.0%
!!! TTTTAATTCATAATAACTTA+TGG - chr4_1:35436897-35436916 Msa0545350:intron 10.0%
!!! ATTTTTTTTTTTTTTACTCA+TGG + chr4_1:35436973-35436992 None:intergenic 10.0%
!! TAGAAAACAACAATAATAAT+TGG - chr4_1:35434120-35434139 Msa0545350:three_prime_UTR 15.0%
!!! TTTAATTGTAATTTGTTTGT+AGG - chr4_1:35434345-35434364 Msa0545350:exon 15.0%
!!! GGTAATTTTTATTATAAGAT+TGG - chr4_1:35434445-35434464 Msa0545350:intron 15.0%
!! AATGCTATTAAAATTAAGTA+AGG + chr4_1:35435247-35435266 None:intergenic 15.0%
!! AAGCATAAATTAAACAAATT+TGG + chr4_1:35435319-35435338 None:intergenic 15.0%
!!! AATTTTTGCGATATTTTTTT+CGG + chr4_1:35435403-35435422 None:intergenic 15.0%
!! AGATATAAGTAACAAAAATA+TGG + chr4_1:35435438-35435457 None:intergenic 15.0%
!!! TAAACAAAATTTATTTTAGC+AGG - chr4_1:35435597-35435616 Msa0545350:intron 15.0%
!!! AAACAAAATTTATTTTAGCA+GGG - chr4_1:35435598-35435617 Msa0545350:intron 15.0%
!! AAACCTATTAAAATTAAGTA+AGG - chr4_1:35435659-35435678 Msa0545350:intron 15.0%
!!! TATGATTATTTTCATTAACT+TGG + chr4_1:35435814-35435833 None:intergenic 15.0%
!!! TTTTTTTTTCTAACAATCTA+TGG + chr4_1:35436274-35436293 None:intergenic 15.0%
!! AAATTAAATCCATAAAGTTT+AGG - chr4_1:35436292-35436311 Msa0545350:CDS 15.0%
!! AGTAAAATAAAGAAAAGAAA+AGG - chr4_1:35436527-35436546 Msa0545350:intron 15.0%
!!! TTACTTGTAATCTATGATTT+TGG + chr4_1:35434209-35434228 None:intergenic 20.0%
!! ATCATAGATTACAAGTAAAA+TGG - chr4_1:35434211-35434230 Msa0545350:three_prime_UTR 20.0%
!!! CATTATTTTGTGAATTGTTA+TGG - chr4_1:35434719-35434738 Msa0545350:intron 20.0%
!!! TTTTTGCACACATAAAAAAA+TGG - chr4_1:35435172-35435191 Msa0545350:intron 20.0%
!!! TTTTGCACACATAAAAAAAT+GGG - chr4_1:35435173-35435192 Msa0545350:intron 20.0%
!!! AAATGGGTTAATTATGTTTT+TGG - chr4_1:35435189-35435208 Msa0545350:intron 20.0%
!!! AGTCCTTACTTAATTTTAAT+AGG + chr4_1:35435241-35435260 None:intergenic 20.0%
!!! TTTTGGGTTAAATATGTTTT+TGG + chr4_1:35435717-35435736 None:intergenic 20.0%
!!! AAATTGGAAGGTTTTTTTTT+GGG + chr4_1:35435733-35435752 None:intergenic 20.0%
!!! AAAATTGGAAGGTTTTTTTT+TGG + chr4_1:35435734-35435753 None:intergenic 20.0%
!!! TAAATGGGGTATTAAAAAAT+TGG + chr4_1:35435749-35435768 None:intergenic 20.0%
!! AAAGTAATGAAAATATGAAG+TGG - chr4_1:35435886-35435905 Msa0545350:intron 20.0%
!!! ATTTTTATTTTTATGGTGGT+CGG + chr4_1:35436128-35436147 None:intergenic 20.0%
!! AAATAAATTGTATCCATTGT+TGG + chr4_1:35436224-35436243 None:intergenic 20.0%
!!! ACAATGGATACAATTTATTT+TGG - chr4_1:35436224-35436243 Msa0545350:intron 20.0%
!! TGCTAATGAGAAATTATAAA+TGG - chr4_1:35436396-35436415 Msa0545350:CDS 20.0%
!! GAACTTTAACAAAAAAAATC+TGG - chr4_1:35436422-35436441 Msa0545350:intron 20.0%
!! TATTACTTTGAATTAAACTG+AGG - chr4_1:35436862-35436881 Msa0545350:intron 20.0%
!! ATTTACAACATTCATTATGA+AGG + chr4_1:35437054-35437073 None:intergenic 20.0%
!! AAAATGTACAACAAAAAGTT+GGG + chr4_1:35437106-35437125 None:intergenic 20.0%
!! AAAAATGTACAACAAAAAGT+TGG + chr4_1:35437107-35437126 None:intergenic 20.0%
! AAATGAAATAAGATTGGGTT+TGG + chr4_1:35434080-35434099 None:intergenic 25.0%
!! AAACCCAATCTTATTTCATT+TGG - chr4_1:35434079-35434098 Msa0545350:three_prime_UTR 25.0%
! CTTCCAAATGAAATAAGATT+GGG + chr4_1:35434085-35434104 None:intergenic 25.0%
!! TTTTATAGTATACGAAAGTG+AGG - chr4_1:35434532-35434551 Msa0545350:intron 25.0%
! ATTTCAATGTGATTGGATTT+GGG - chr4_1:35434795-35434814 Msa0545350:intron 25.0%
! ATATTTGATCATTCCTTACA+TGG + chr4_1:35435064-35435083 None:intergenic 25.0%
! TATAAATTATTGGCATCTAG+AGG - chr4_1:35435083-35435102 Msa0545350:intron 25.0%
! TCTAACAGACAATTAAAACA+AGG - chr4_1:35435138-35435157 Msa0545350:intron 25.0%
! AAGTAAGGACTAAACTTATA+AGG + chr4_1:35435232-35435251 None:intergenic 25.0%
! GTGTTAAGAACGTTATTAAA+AGG - chr4_1:35435373-35435392 Msa0545350:intron 25.0%
! AAAGAACTTGTGACTTAAAT+GGG + chr4_1:35435764-35435783 None:intergenic 25.0%
! TAAAGAACTTGTGACTTAAA+TGG + chr4_1:35435765-35435784 None:intergenic 25.0%
! TAATGAAAATATGAAGTGGA+AGG - chr4_1:35435890-35435909 Msa0545350:intron 25.0%
!!! TTTTTATTTTTATGGTGGTC+GGG + chr4_1:35436127-35436146 None:intergenic 25.0%
!! GTAAAATTTTACACCAACAA+TGG - chr4_1:35436208-35436227 Msa0545350:intron 25.0%
! TTATTAGCACCTAAACTTTA+TGG + chr4_1:35436304-35436323 None:intergenic 25.0%
!! TTCAAAAGCAGTTTTTGTTA+AGG + chr4_1:35436497-35436516 None:intergenic 25.0%
! TCAGTTTATATTATATCCGT+CGG + chr4_1:35436638-35436657 None:intergenic 25.0%
! AAATGTACAACAAAAAGTTG+GGG + chr4_1:35437105-35437124 None:intergenic 25.0%
CCTTCCAAATGAAATAAGAT+TGG + chr4_1:35434086-35434105 None:intergenic 30.0%
! CCAATCTTATTTCATTTGGA+AGG - chr4_1:35434083-35434102 Msa0545350:three_prime_UTR 30.0%
TGAATTGTTATGGCATGTTA+TGG - chr4_1:35434729-35434748 Msa0545350:intron 30.0%
GATTTCAATGTGATTGGATT+TGG - chr4_1:35434794-35434813 Msa0545350:intron 30.0%
ATGAAAATGACTAACCAGAA+GGG + chr4_1:35434944-35434963 None:intergenic 30.0%
! TATAAGGTCGCAATTTTGTA+GGG + chr4_1:35435216-35435235 None:intergenic 30.0%
! TTATAAGGTCGCAATTTTGT+AGG + chr4_1:35435217-35435236 None:intergenic 30.0%
!!! GAGTGCAGAAATTTTTTGTA+GGG + chr4_1:35435276-35435295 None:intergenic 30.0%
!!! TGAGTGCAGAAATTTTTTGT+AGG + chr4_1:35435277-35435296 None:intergenic 30.0%
!!! TTTTGCGATATTTTTTTCGG+AGG + chr4_1:35435400-35435419 None:intergenic 30.0%
! CAAGTTTAGAACACTATGAA+AGG + chr4_1:35435535-35435554 None:intergenic 30.0%
!! TTAGAAGATCGCCATTTTAT+AGG - chr4_1:35435689-35435708 Msa0545350:intron 30.0%
!! TAGAAGATCGCCATTTTATA+GGG - chr4_1:35435690-35435709 Msa0545350:intron 30.0%
!!! TGTTTTTGGTCCCTATAAAA+TGG + chr4_1:35435703-35435722 None:intergenic 30.0%
! TGGGGTATTAAAAAATTGGA+AGG + chr4_1:35435745-35435764 None:intergenic 30.0%
AAGAACTTGTGACTTAAATG+GGG + chr4_1:35435763-35435782 None:intergenic 30.0%
!!! TTTTATTTTTATGGTGGTCG+GGG + chr4_1:35436126-35436145 None:intergenic 30.0%
GTCGGTAATTTCTAACAAAA+CGG + chr4_1:35436620-35436639 None:intergenic 30.0%
!! GTTTTGTTAGAAATTACCGA+CGG - chr4_1:35436619-35436638 Msa0545350:intron 30.0%
AAGGCTGAAAGTAACATAAA+GGG + chr4_1:35436942-35436961 None:intergenic 30.0%
TTTACTCATGGTAGATTACA+AGG + chr4_1:35436961-35436980 None:intergenic 30.0%
TGAAACCTCAAGTGATTGTT+AGG - chr4_1:35434373-35434392 Msa0545350:CDS 35.0%
GATAAAAACGAACTTGTGCA+TGG + chr4_1:35434569-35434588 None:intergenic 35.0%
GTGTTGTATCGTGCATAATA+AGG + chr4_1:35434633-35434652 None:intergenic 35.0%
TTATGGCATGTTATGGCATA+TGG - chr4_1:35434736-35434755 Msa0545350:intron 35.0%
! AGACTTTTACCATCTATAGC+TGG + chr4_1:35434851-35434870 None:intergenic 35.0%
ATAGATGGTAAAAGTCTGAC+TGG - chr4_1:35434854-35434873 Msa0545350:intron 35.0%
!! GGACTTTTCTTTGATAGCAT+TGG - chr4_1:35434875-35434894 Msa0545350:intron 35.0%
GATGAAAATGACTAACCAGA+AGG + chr4_1:35434945-35434964 None:intergenic 35.0%
ATCAATCCTACCGTCTAAAT+CGG - chr4_1:35435031-35435050 Msa0545350:intron 35.0%
!!! TGGTTTTGTTCCGATTTAGA+CGG + chr4_1:35435044-35435063 None:intergenic 35.0%
AATCGGAACAAAACCATGTA+AGG - chr4_1:35435048-35435067 Msa0545350:intron 35.0%
! AAGGAATCAGTTAGAGGTAT+TGG - chr4_1:35435909-35435928 Msa0545350:intron 35.0%
!! AGGAATCAGTTAGAGGTATT+GGG - chr4_1:35435910-35435929 Msa0545350:intron 35.0%
GTGAGCTTGTCTTAGTAAAA+AGG - chr4_1:35435937-35435956 Msa0545350:intron 35.0%
TTTCTAACAAAACGGTTCCA+TGG + chr4_1:35436612-35436631 None:intergenic 35.0%
TCAAACATGATGAATTGAGC+AGG - chr4_1:35436716-35436735 Msa0545350:intron 35.0%
ATGATGAATTGAGCAGGTTA+TGG - chr4_1:35436722-35436741 Msa0545350:intron 35.0%
! TTTGGCCAAATTGGTTTCAA+AGG - chr4_1:35436784-35436803 Msa0545350:CDS 35.0%
!! TCCTTCCTTTGAAACCAATT+TGG + chr4_1:35436792-35436811 None:intergenic 35.0%
CAAGGCTGAAAGTAACATAA+AGG + chr4_1:35436943-35436962 None:intergenic 35.0%
! TTTTCCTAGTACGATGGAAA+AGG + chr4_1:35437016-35437035 None:intergenic 35.0%
TCCATCGTACTAGGAAAAAT+TGG - chr4_1:35437018-35437037 Msa0545350:five_prime_UTR 35.0%
! ACCAATTTTTCCTAGTACGA+TGG + chr4_1:35437022-35437041 None:intergenic 35.0%
! CAAAGTAGTGGTGGTTTTTG+TGG + chr4_1:35434148-35434167 None:intergenic 40.0%
ATATGTGTGCAAAGTAGTGG+TGG + chr4_1:35434157-35434176 None:intergenic 40.0%
CAGATATGTGTGCAAAGTAG+TGG + chr4_1:35434160-35434179 None:intergenic 40.0%
GGATTCCTAACAATCACTTG+AGG + chr4_1:35434381-35434400 None:intergenic 40.0%
!! GAATCCTTTGAAGCAAGCTA+TGG - chr4_1:35434395-35434414 Msa0545350:CDS 40.0%
TGGTGTATAGTAGCTTCCAA+AGG - chr4_1:35434756-35434775 Msa0545350:intron 40.0%
GGTGTATAGTAGCTTCCAAA+GGG - chr4_1:35434757-35434776 Msa0545350:intron 40.0%
ATAGTAGCTTCCAAAGGGAT+TGG - chr4_1:35434762-35434781 Msa0545350:intron 40.0%
AGGAGGGATTTCAATGTGAT+TGG - chr4_1:35434788-35434807 Msa0545350:intron 40.0%
!! GTGATTGGATTTGGGTTGAT+AGG - chr4_1:35434803-35434822 Msa0545350:intron 40.0%
!! TTGGATTTGGGTTGATAGGT+TGG - chr4_1:35434807-35434826 Msa0545350:intron 40.0%
!! ATTTGGGTTGATAGGTTGGT+TGG - chr4_1:35434811-35434830 Msa0545350:intron 40.0%
TCTATAGCTGGTATGCTTGA+TGG + chr4_1:35434839-35434858 None:intergenic 40.0%
TCAAGCATACCAGCTATAGA+TGG - chr4_1:35434839-35434858 Msa0545350:intron 40.0%
TTTGTTCCGATTTAGACGGT+AGG + chr4_1:35435040-35435059 None:intergenic 40.0%
AAGTGGAAGGAATCAGTTAG+AGG - chr4_1:35435903-35435922 Msa0545350:intron 40.0%
TAATGTCAAAGTTGTCCTCG+TGG - chr4_1:35436045-35436064 Msa0545350:intron 40.0%
AATGTCAAAGTTGTCCTCGT+GGG - chr4_1:35436046-35436065 Msa0545350:intron 40.0%
! CTGTTCATCTCTCTCACTTT+TGG - chr4_1:35436766-35436785 Msa0545350:CDS 40.0%
!! TCTCTCACTTTTGGCCAAAT+TGG - chr4_1:35436775-35436794 Msa0545350:CDS 40.0%
! GCCAAATTGGTTTCAAAGGA+AGG - chr4_1:35436788-35436807 Msa0545350:CDS 40.0%
!! AGTGCCATAGCTTGCTTCAA+AGG + chr4_1:35434402-35434421 None:intergenic 45.0%
TTGAAGCAAGCTATGGCACT+TGG - chr4_1:35434402-35434421 Msa0545350:CDS 45.0%
CAAGCTATGGCACTTGGAAA+TGG - chr4_1:35434408-35434427 Msa0545350:CDS 45.0%
CTATGGCACTTGGAAATGGT+GGG - chr4_1:35434412-35434431 Msa0545350:CDS 45.0%
! GAAATGGTGGGAGAGTTACA+TGG - chr4_1:35434424-35434443 Msa0545350:CDS 45.0%
AAGTAAGAGCAGGAGGAGTA+GGG + chr4_1:35434919-35434938 None:intergenic 45.0%
! TGGGCTTATCTCAGTTGGTA+GGG - chr4_1:35436065-35436084 Msa0545350:intron 45.0%
AGTAACCCGAGTTCAAGTCT+CGG + chr4_1:35436558-35436577 None:intergenic 45.0%
AAAACGGTTCCATGGTCTAG+CGG + chr4_1:35436604-35436623 None:intergenic 45.0%
TGGTTTCAAAGGAAGGACTG+AGG - chr4_1:35436795-35436814 Msa0545350:CDS 45.0%
! AGGTGGCAAAGTGTTCTACA+AGG + chr4_1:35436996-35437015 None:intergenic 45.0%
TCCTAGTACGATGGAAAAGG+TGG + chr4_1:35437013-35437032 None:intergenic 45.0%
!! AAAATAAATAAATATTCATA+TGG + chr4_1:35434505-35434524 None:intergenic 5.0%
!!! TATGAATATTTATTTATTTT+CGG - chr4_1:35434505-35434524 Msa0545350:intron 5.0%
!!! TAGTTTTATTTTTATTTTTA+TGG + chr4_1:35436135-35436154 None:intergenic 5.0%
!!! AACATTTTTTTTTTAATTAA+TGG - chr4_1:35436350-35436369 Msa0545350:CDS 5.0%
!!! ACATTTTTTTTTTAATTAAT+GGG - chr4_1:35436351-35436370 Msa0545350:CDS 5.0%
ACAACCTTTCCAACCGTCCT+AGG - chr4_1:35434239-35434258 Msa0545350:three_prime_UTR 50.0%
CATTCCTAGGACGGTTGGAA+AGG + chr4_1:35434246-35434265 None:intergenic 50.0%
CTTTCCAACCGTCCTAGGAA+TGG - chr4_1:35434244-35434263 Msa0545350:three_prime_UTR 50.0%
GCTATGGCACTTGGAAATGG+TGG - chr4_1:35434411-35434430 Msa0545350:CDS 50.0%
!! GCTTCCAAAGGGATTGGCTA+AGG - chr4_1:35434768-35434787 Msa0545350:intron 50.0%
!! TCCAAAGGGATTGGCTAAGG+AGG - chr4_1:35434771-35434790 Msa0545350:intron 50.0%
!! CCAAAGGGATTGGCTAAGGA+GGG - chr4_1:35434772-35434791 Msa0545350:intron 50.0%
GAAGTAAGAGCAGGAGGAGT+AGG + chr4_1:35434920-35434939 None:intergenic 50.0%
AAGGGTGAAGTAAGAGCAGG+AGG + chr4_1:35434926-35434945 None:intergenic 50.0%
CAGAAGGGTGAAGTAAGAGC+AGG + chr4_1:35434929-35434948 None:intergenic 50.0%
CTGCTCTTACTTCACCCTTC+TGG - chr4_1:35434927-35434946 Msa0545350:intron 50.0%
GTGGGCTTATCTCAGTTGGT+AGG - chr4_1:35436064-35436083 Msa0545350:intron 50.0%
GTTCCACCGAGACTTGAACT+CGG - chr4_1:35436549-35436568 Msa0545350:intron 50.0%
TTCCACCGAGACTTGAACTC+GGG - chr4_1:35436550-35436569 Msa0545350:intron 50.0%
GAGACTTGAACTCGGGTTAC+TGG - chr4_1:35436557-35436576 Msa0545350:intron 50.0%
TGGTCTAGCGGTTAGGACAT+TGG + chr4_1:35436592-35436611 None:intergenic 50.0%
ATGTCCTAACCGCTAGACCA+TGG - chr4_1:35436592-35436611 Msa0545350:intron 50.0%
GCAGGTTATGGCTGATCTGT+TGG - chr4_1:35436734-35436753 Msa0545350:intron 50.0%
! GCCACCTTTTCCATCGTACT+AGG - chr4_1:35437009-35437028 Msa0545350:five_prime_UTR 50.0%
TGCACCAGCCATTCCTAGGA+CGG + chr4_1:35434255-35434274 None:intergenic 55.0%
GTGATGCACCAGCCATTCCT+AGG + chr4_1:35434259-35434278 None:intergenic 55.0%
CCCTCCTTAGCCAATCCCTT+TGG + chr4_1:35434775-35434794 None:intergenic 55.0%
CCAACTGAGATAAGCCCACG+AGG + chr4_1:35436063-35436082 None:intergenic 55.0%
CCTCGTGGGCTTATCTCAGT+TGG - chr4_1:35436060-35436079 Msa0545350:intron 55.0%
AACCCGAGTTCAAGTCTCGG+TGG + chr4_1:35436555-35436574 None:intergenic 55.0%
GGTTCCATGGTCTAGCGGTT+AGG + chr4_1:35436599-35436618 None:intergenic 55.0%
ATGGCTGATCTGTTGGCACC+TGG - chr4_1:35436741-35436760 Msa0545350:intron 55.0%
TGGCTGATCTGTTGGCACCT+GGG - chr4_1:35436742-35436761 Msa0545350:intron 55.0%
TGAGAGAGATGAACAGCCCC+AGG + chr4_1:35436762-35436781 None:intergenic 55.0%
CCAGCCATTCCTAGGACGGT+TGG + chr4_1:35434251-35434270 None:intergenic 60.0%
CCAACCGTCCTAGGAATGGC+TGG - chr4_1:35434248-35434267 Msa0545350:three_prime_UTR 60.0%
GGTGCATCACGTCTCACGTC+AGG - chr4_1:35434269-35434288 Msa0545350:three_prime_UTR 60.0%
GGCTGATCTGTTGGCACCTG+GGG - chr4_1:35436743-35436762 Msa0545350:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 35434070 35437128 35434070 ID=Msa0545350;Name=Msa0545350
chr4_1 mRNA 35434070 35437128 35434070 ID=Msa0545350-mRNA-1;Parent=Msa0545350;Name=Msa0545350-mRNA-1;_AED=0.03;_eAED=0.03;_QI=160|1|1|1|1|1|4|294|139
chr4_1 exon 35434070 35434460 35434070 ID=Msa0545350-mRNA-1:exon:8988;Parent=Msa0545350-mRNA-1
chr4_1 exon 35436250 35436432 35436250 ID=Msa0545350-mRNA-1:exon:8987;Parent=Msa0545350-mRNA-1
chr4_1 exon 35436753 35436831 35436753 ID=Msa0545350-mRNA-1:exon:8986;Parent=Msa0545350-mRNA-1
chr4_1 exon 35436908 35437128 35436908 ID=Msa0545350-mRNA-1:exon:8985;Parent=Msa0545350-mRNA-1
chr4_1 five_prime_UTR 35436969 35437128 35436969 ID=Msa0545350-mRNA-1:five_prime_utr;Parent=Msa0545350-mRNA-1
chr4_1 CDS 35436908 35436968 35436908 ID=Msa0545350-mRNA-1:cds;Parent=Msa0545350-mRNA-1
chr4_1 CDS 35436753 35436831 35436753 ID=Msa0545350-mRNA-1:cds;Parent=Msa0545350-mRNA-1
chr4_1 CDS 35436250 35436432 35436250 ID=Msa0545350-mRNA-1:cds;Parent=Msa0545350-mRNA-1
chr4_1 CDS 35434364 35434460 35434364 ID=Msa0545350-mRNA-1:cds;Parent=Msa0545350-mRNA-1
chr4_1 three_prime_UTR 35434070 35434363 35434070 ID=Msa0545350-mRNA-1:three_prime_utr;Parent=Msa0545350-mRNA-1
Gene Sequence

>Msa0545350

ATGGCAGCAACAACCTTTCCAACCGTCCTAGGAATGGCTGGTGCATCACGTCTCACGTCAGGATTTGTGAAACCTCAAGTGATTGTTAGGAATCCTTTGAAGCAAGCTATGGCACTTGGAAATGGTGGGAGAGTTACATGTAGCTTCCAAAGGGATTGGCTAAGGAGGGATTTCAATGTGATTGGATTTGGGTTGATAGGTTGGTTGGCACCATCAAGCATACCAGCTATAGATGGTAAAAGTCTGACTGGACTTTTCTTTGATAGCATTGGCACTGAACTTGCTCACTTCCCTACTCCTCCTGCTCTTACTTCACCCTTCTGGTTATGGCTGATCTGTTGGCACCTGGGGCTGTTCATCTCTCTCACTTTTGGCCAAATTGGTTTCAAAGGAAGGACTGAGGATTACTTTCAGAAATGA

Protein sequence

>Msa0545350

MAATTFPTVLGMAGASRLTSGFVKPQVIVRNPLKQAMALGNGGRVTCSFQRDWLRRDFNVIGFGLIGWLAPSSIPAIDGKSLTGLFFDSIGTELAHFPTPPALTSPFWLWLICWHLGLFISLTFGQIGFKGRTEDYFQK*