AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0859390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0859390 MtrunA17_Chr5g0438641 98.310 355 6 0 1 355 1 355 0.0 729
Msa0859390 MtrunA17_Chr3g0120861 78.116 329 72 0 27 355 33 361 0.0 554
Msa0859390 MtrunA17_Chr3g0105401 60.114 351 134 3 10 354 1 351 9.63e-156 441
Msa0859390 MtrunA17_Chr5g0438621 59.574 329 133 0 25 353 23 351 1.04e-152 433
Msa0859390 MtrunA17_Chr5g0438631 58.769 325 133 1 30 353 26 350 1.16e-145 416
Msa0859390 MtrunA17_Chr2g0330781 43.396 318 179 1 30 346 29 346 7.08e-98 294
Msa0859390 MtrunA17_Chr8g0341001 42.767 318 181 1 30 346 30 347 3.57e-97 292
Msa0859390 MtrunA17_Chr8g0371481 40.884 362 201 3 6 354 3 364 1.93e-94 285
Msa0859390 MtrunA17_Chr8g0371471 42.901 324 185 0 31 354 40 363 2.73e-94 285
Msa0859390 MtrunA17_Chr1g0156921 40.331 362 207 4 1 354 4 364 3.07e-93 282
Msa0859390 MtrunA17_Chr5g0405821 41.176 357 204 3 3 353 10 366 1.05e-92 281
Msa0859390 MtrunA17_Chr1g0156931 41.954 348 196 4 7 354 20 361 3.03e-92 280
Msa0859390 MtrunA17_Chr8g0371491 39.489 352 207 1 9 354 7 358 4.17e-92 279
Msa0859390 MtrunA17_Chr5g0405831 40.223 358 205 4 3 353 10 365 4.75e-92 280
Msa0859390 MtrunA17_Chr5g0432101 41.265 332 191 3 25 353 26 356 1.25e-90 276
Msa0859390 MtrunA17_Chr4g0046151 42.730 337 169 6 15 336 20 347 1.25e-88 271
Msa0859390 MtrunA17_Chr2g0320671 41.463 328 192 0 15 342 13 340 1.95e-88 270
Msa0859390 MtrunA17_Chr2g0283191 42.151 344 185 6 3 336 12 351 3.25e-88 270
Msa0859390 MtrunA17_Chr1g0156901 38.827 358 211 3 3 353 14 370 9.90e-87 266
Msa0859390 MtrunA17_Chr1g0156891 40.426 329 194 2 27 354 38 365 2.90e-85 262
Msa0859390 MtrunA17_Chr3g0142921 40.432 324 191 2 31 353 35 357 1.61e-84 260
Msa0859390 MtrunA17_Chr1g0156911 38.415 328 201 1 27 354 32 358 3.18e-83 256
Msa0859390 MtrunA17_Chr3g0142941 39.692 325 191 2 30 354 45 364 5.48e-81 251
Msa0859390 MtrunA17_Chr4g0027521 37.681 345 210 3 9 350 6 348 1.15e-77 242
Msa0859390 MtrunA17_Chr5g0396511 40.127 314 182 6 35 345 49 359 3.25e-72 229
Msa0859390 MtrunA17_Chr5g0437421 37.353 340 202 5 24 354 22 359 6.31e-70 223
Msa0859390 MtrunA17_Chr7g0275021 35.542 332 198 7 26 351 28 349 7.27e-69 220
Msa0859390 MtrunA17_Chr1g0157001 36.449 321 190 5 37 355 41 349 1.21e-68 220
Msa0859390 MtrunA17_Chr2g0301641 39.759 332 186 7 21 343 30 356 1.50e-68 220
Msa0859390 MtrunA17_Chr4g0008851 35.629 334 204 8 16 342 15 344 6.50e-68 218
Msa0859390 MtrunA17_Chr7g0274991 33.621 348 222 7 1 343 1 344 5.95e-67 215
Msa0859390 MtrunA17_Chr7g0275011 34.513 339 210 6 15 347 17 349 1.03e-66 214
Msa0859390 MtrunA17_Chr2g0285061 36.036 333 205 6 15 343 15 343 5.95e-66 213
Msa0859390 MtrunA17_Chr1g0182811 34.848 330 203 7 25 349 26 348 1.23e-64 209
Msa0859390 MtrunA17_Chr1g0189901 36.522 345 208 9 5 343 3 342 2.46e-64 208
Msa0859390 MtrunA17_Chr7g0275001 34.925 335 211 6 17 347 10 341 3.33e-64 208
Msa0859390 MtrunA17_Chr6g0457921 33.429 347 222 7 5 346 2 344 1.12e-63 206
Msa0859390 MtrunA17_Chr8g0374101 33.983 359 219 8 6 347 2 359 1.12e-63 207
Msa0859390 MtrunA17_Chr5g0434621 34.639 332 208 8 15 343 9 334 3.48e-63 205
Msa0859390 MtrunA17_Chr2g0294301 35.530 349 216 6 3 346 6 350 2.00e-61 201
Msa0859390 MtrunA17_Chr8g0380041 36.232 345 202 9 6 343 8 341 2.31e-61 201
Msa0859390 MtrunA17_Chr3g0086641 35.088 342 212 8 7 343 12 348 1.20e-60 199
Msa0859390 MtrunA17_Chr1g0189931 35.110 319 199 6 32 346 32 346 1.29e-60 199
Msa0859390 MtrunA17_Chr1g0189891 36.957 322 184 9 32 346 29 338 3.59e-60 197
Msa0859390 MtrunA17_Chr8g0380031 36.957 322 176 8 29 342 81 383 4.12e-58 193
Msa0859390 MtrunA17_Chr4g0017431 32.440 336 221 5 15 347 14 346 2.04e-57 190
Msa0859390 MtrunA17_Chr4g0068441 33.433 335 214 6 18 347 21 351 2.20e-57 190
Msa0859390 MtrunA17_Chr3g0092131 33.229 319 203 8 35 348 26 339 2.38e-57 190
Msa0859390 MtrunA17_Chr3g0131321 33.754 317 201 6 32 342 34 347 2.30e-56 188
Msa0859390 MtrunA17_Chr4g0027571 43.396 212 120 0 135 346 3 214 2.62e-56 183
Msa0859390 MtrunA17_Chr7g0215961 32.209 326 200 7 25 346 26 334 9.43e-55 183
Msa0859390 MtrunA17_Chr2g0294311 32.370 346 216 7 17 347 14 356 2.24e-54 182
Msa0859390 MtrunA17_Chr4g0060811 32.704 318 204 8 35 347 30 342 6.55e-54 181
Msa0859390 MtrunA17_Chr3g0077571 32.448 339 218 8 8 343 6 336 7.39e-53 178
Msa0859390 MtrunA17_Chr5g0444401 33.430 344 211 9 6 340 4 338 4.67e-52 176
Msa0859390 MtrunA17_Chr2g0284921 34.688 320 190 9 29 342 31 337 1.25e-51 175
Msa0859390 MtrunA17_Chr8g0370951 36.250 320 187 10 27 335 26 339 2.87e-50 172
Msa0859390 MtrunA17_Chr3g0099161 33.535 331 203 9 15 335 74 397 4.93e-50 172
Msa0859390 MtrunA17_Chr8g0344941 34.839 310 191 7 32 335 41 345 1.94e-49 170
Msa0859390 MtrunA17_Chr2g0284951 35.650 331 188 13 19 342 20 332 6.85e-48 166
Msa0859390 MtrunA17_Chr2g0284991 36.025 322 185 11 28 342 29 336 2.94e-47 164
Msa0859390 MtrunA17_Chr3g0099231 30.904 343 218 9 8 342 8 339 5.36e-47 164
Msa0859390 MtrunA17_Chr3g0077581 32.298 322 207 9 29 343 33 350 1.70e-46 162
Msa0859390 MtrunA17_Chr8g0344931 34.891 321 193 7 29 345 34 342 3.01e-46 161
Msa0859390 MtrunA17_Chr3g0099151 32.641 337 209 10 15 340 69 398 2.84e-45 160
Msa0859390 MtrunA17_Chr7g0229591 39.024 205 123 1 1 205 1 203 1.01e-44 152
Msa0859390 MtrunA17_Chr8g0349341 31.056 322 202 9 32 345 37 346 1.03e-43 154
Msa0859390 MtrunA17_Chr8g0349321 31.875 320 198 9 32 343 37 344 3.00e-43 153
Msa0859390 MtrunA17_Chr3g0085881 32.298 322 195 11 26 342 27 330 2.65e-42 150
Msa0859390 MtrunA17_Chr2g0285001 32.647 340 206 14 13 342 11 337 6.01e-41 147
Msa0859390 MtrunA17_Chr5g0420811 31.661 319 201 9 27 342 28 332 6.55e-41 147
Msa0859390 MtrunA17_Chr3g0085231 31.503 346 207 11 6 342 5 329 1.03e-40 146
Msa0859390 MtrunA17_Chr7g0229581 47.518 141 74 0 206 346 7 147 1.78e-40 140
Msa0859390 MtrunA17_Chr8g0370981 28.606 409 213 11 4 347 8 402 7.31e-40 145
Msa0859390 MtrunA17_Chr8g0349301 31.449 283 179 8 32 311 37 307 1.17e-39 142
Msa0859390 MtrunA17_Chr2g0284941 32.177 317 169 15 28 335 29 308 7.75e-35 130
Msa0859390 MtrunA17_Chr7g0226911 28.297 364 195 13 27 347 30 370 1.85e-32 125
Msa0859390 MtrunA17_Chr5g0440501 33.180 217 137 3 134 343 13 228 4.77e-32 120
Msa0859390 MtrunA17_Chr4g0018571 41.139 158 93 0 194 351 18 175 7.48e-32 118
Msa0859390 MtrunA17_Chr1g0160011 30.383 339 193 14 31 341 39 362 3.23e-31 121
Msa0859390 MtrunA17_Chr8g0364141 72.603 73 20 0 272 344 63 135 9.13e-31 114
Msa0859390 MtrunA17_Chr8g0381581 29.107 347 202 13 31 346 39 372 1.87e-30 119
Msa0859390 MtrunA17_Chr1g0160031 27.568 370 213 13 15 350 22 370 2.14e-30 119
Msa0859390 MtrunA17_Chr8g0349331 27.726 321 184 10 32 345 35 314 5.26e-30 117
Msa0859390 MtrunA17_Chr6g0469521 46.154 130 70 0 198 327 23 152 1.63e-29 111
Msa0859390 MtrunA17_Chr1g0159981 28.739 341 198 12 31 341 45 370 1.74e-29 117
Msa0859390 MtrunA17_Chr7g0226931 27.624 362 199 15 32 346 38 383 1.79e-29 117
Msa0859390 MtrunA17_Chr1g0159991 29.326 341 196 12 31 341 35 360 1.35e-28 114
Msa0859390 MtrunA17_Chr7g0271551 27.761 335 213 12 27 347 31 350 3.17e-28 113
Msa0859390 MtrunA17_Chr8g0370961 28.899 218 149 4 126 342 11 223 6.09e-28 109
Msa0859390 MtrunA17_Chr7g0254461 25.729 377 233 12 10 351 17 381 8.05e-28 112
Msa0859390 MtrunA17_Chr1g0159971 28.488 344 193 13 32 341 47 371 8.74e-28 112
Msa0859390 MtrunA17_Chr1g0160101 27.895 380 213 15 5 341 6 367 1.09e-27 112
Msa0859390 MtrunA17_Chr1g0178941 29.609 358 195 14 22 354 33 358 1.55e-27 111
Msa0859390 MtrunA17_Chr6g0469511 42.400 125 72 0 20 144 18 142 2.38e-27 105
Msa0859390 MtrunA17_Chr8g0347751 25.714 350 217 10 32 351 36 372 6.71e-27 109
Msa0859390 MtrunA17_Chr6g0459921 31.050 219 140 7 130 342 127 340 9.61e-27 108
Msa0859390 MtrunA17_Chr7g0275291 25.843 356 223 13 13 341 14 355 1.87e-26 108
Msa0859390 MtrunA17_Chr6g0455661 30.594 219 141 7 130 342 238 451 1.50e-25 107
Msa0859390 MtrunA17_Chr6g0455661 49.057 106 46 4 31 132 30 131 6.60e-19 87.8
Msa0859390 MtrunA17_Chr4g0027561 40.323 124 72 1 1 124 1 122 2.77e-25 99.8
Msa0859390 MtrunA17_Chr3g0104821 27.954 347 209 14 32 351 44 376 2.68e-24 102
Msa0859390 MtrunA17_Chr7g0273101 25.956 366 218 13 13 346 15 359 2.89e-24 102
Msa0859390 MtrunA17_Chr2g0317271 29.141 326 201 12 36 347 34 343 3.06e-24 102
Msa0859390 MtrunA17_Chr6g0450721 26.230 366 230 13 1 347 1 345 3.39e-24 101
Msa0859390 MtrunA17_Chr0c01g0489581 28.963 328 199 12 36 347 34 343 3.96e-24 101
Msa0859390 MtrunA17_Chr2g0317261 28.291 357 224 13 7 347 3 343 4.42e-24 101
Msa0859390 MtrunA17_Chr3g0112821 27.711 332 221 9 32 351 30 354 7.23e-24 100
Msa0859390 MtrunA17_Chr0c01g0489571 28.963 328 199 12 36 347 34 343 7.31e-24 100
Msa0859390 MtrunA17_Chr6g0450731 25.429 350 231 11 12 347 14 347 7.59e-24 100
Msa0859390 MtrunA17_Chr1g0191461 25.556 360 227 11 15 346 14 360 8.13e-24 100
Msa0859390 MtrunA17_Chr3g0093031 27.945 365 237 12 6 351 2 359 9.44e-24 100
Msa0859390 MtrunA17_Chr2g0283481 27.941 340 219 12 26 346 41 373 2.62e-23 99.8
Msa0859390 MtrunA17_Chr7g0266061 28.571 329 194 14 22 335 32 334 2.68e-23 99.4
Msa0859390 MtrunA17_Chr2g0301581 28.158 380 215 17 1 352 1 350 7.14e-23 98.2
Msa0859390 MtrunA17_Chr7g0226941 25.788 349 217 11 27 346 28 363 9.30e-23 98.2
Msa0859390 MtrunA17_Chr6g0450711 25.788 349 219 11 24 347 114 447 3.44e-22 97.4
Msa0859390 MtrunA17_Chr2g0283511 27.545 334 210 14 37 347 36 360 3.75e-22 96.3
Msa0859390 MtrunA17_Chr8g0352901 24.513 359 236 11 14 346 8 357 4.31e-22 95.9
Msa0859390 MtrunA17_Chr2g0283501 26.816 358 223 12 16 347 15 359 4.53e-22 95.9
Msa0859390 MtrunA17_Chr1g0178931 27.385 325 192 14 33 341 38 334 6.36e-22 95.1
Msa0859390 MtrunA17_Chr6g0463261 39.344 122 74 0 84 205 3 124 8.75e-22 89.7
Msa0859390 MtrunA17_Chr2g0301541 27.632 380 217 17 1 352 1 350 3.22e-21 93.6
Msa0859390 MtrunA17_Chr4g0057991 25.294 340 221 12 33 352 40 366 3.65e-20 90.5
Msa0859390 MtrunA17_Chr6g0450701 25.714 350 216 12 24 346 31 363 4.11e-20 90.5
Msa0859390 MtrunA17_Chr4g0027581 33.333 147 76 1 222 346 41 187 6.26e-20 87.0
Msa0859390 MtrunA17_Chr2g0321991 47.778 90 45 2 30 118 31 119 1.53e-19 83.6
Msa0859390 MtrunA17_Chr2g0283531 27.697 343 204 15 32 346 31 357 1.91e-19 88.6
Msa0859390 MtrunA17_Chr1g0198381 27.019 322 205 12 33 345 3 303 2.32e-19 87.4
Msa0859390 MtrunA17_Chr3g0112691 26.503 366 239 12 6 351 2 357 4.78e-18 84.3
Msa0859390 MtrunA17_Chr3g0096551 27.621 391 216 19 6 351 2 370 9.86e-18 83.6
Msa0859390 MtrunA17_Chr1g0189921 39.496 119 71 1 5 123 4 121 3.82e-16 74.7
Msa0859390 MtrunA17_Chr4g0018561 49.206 63 32 0 20 82 18 80 2.57e-15 70.9
Msa0859390 MtrunA17_Chr8g0370971 36.620 142 78 3 7 139 16 154 7.36e-15 71.6
Msa0859390 MtrunA17_Chr2g0301571 26.846 298 165 14 82 353 37 307 2.78e-14 72.8
Msa0859390 MtrunA17_Chr2g0301551 26.936 297 164 14 82 352 37 306 3.00e-14 72.8
Msa0859390 MtrunA17_Chr2g0301591 27.848 316 169 15 1 290 1 283 2.43e-13 69.7
Msa0859390 MtrunA17_Chr8g0339251 23.708 329 222 11 14 326 8 323 3.00e-13 69.7
Msa0859390 MtrunA17_Chr1g0198391 26.190 336 189 15 33 335 34 343 4.48e-13 69.7
Msa0859390 MtrunA17_Chr2g0308201 43.678 87 43 2 4 85 2 87 6.13e-13 64.3
Msa0859390 MtrunA17_Chr5g0432081 47.619 63 32 1 291 353 10 71 7.27e-13 63.5
Msa0859390 MtrunA17_Chr1g0178961 25.743 202 139 6 159 354 22 218 2.99e-12 65.5
Msa0859390 MtrunA17_Chr3g0104831 29.487 156 95 5 206 347 137 291 7.82e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0859390 AT2G04570.1 63.824 340 120 1 18 354 11 350 1.51e-166 469
Msa0859390 AT2G42990.1 60.417 336 132 1 15 349 10 345 7.82e-159 449
Msa0859390 AT4G26790.1 60.182 329 131 0 25 353 22 350 2.97e-148 422
Msa0859390 AT4G26790.2 60.182 329 131 0 25 353 22 350 2.97e-148 422
Msa0859390 AT5G03810.1 42.262 336 192 2 9 343 8 342 4.12e-94 285
Msa0859390 AT3G16370.1 42.138 318 183 1 30 346 28 345 2.27e-91 278
Msa0859390 AT5G03820.1 40.698 344 198 2 7 346 8 349 2.39e-91 278
Msa0859390 AT5G03820.2 41.056 341 195 2 7 343 36 374 9.18e-91 277
Msa0859390 AT1G59406.1 39.385 358 200 6 1 352 1 347 7.10e-90 274
Msa0859390 AT1G59030.1 39.385 358 200 6 1 352 1 347 7.10e-90 274
Msa0859390 AT1G58725.1 39.385 358 200 6 1 352 1 347 7.10e-90 274
Msa0859390 AT1G75900.1 40.308 325 193 1 30 354 41 364 1.39e-89 273
Msa0859390 AT3G14820.1 42.229 341 182 4 15 344 9 345 1.67e-89 273
Msa0859390 AT3G53100.1 42.296 331 190 1 13 342 9 339 7.03e-87 266
Msa0859390 AT1G75880.2 41.049 324 191 0 30 353 50 373 1.74e-86 266
Msa0859390 AT1G58520.3 39.634 328 184 5 27 352 25 340 2.67e-86 264
Msa0859390 AT1G58525.1 39.634 328 184 5 27 352 25 340 2.67e-86 264
Msa0859390 AT1G06990.1 40.798 326 187 3 31 351 36 360 3.01e-86 265
Msa0859390 AT5G42170.1 38.462 325 197 1 30 354 48 369 1.25e-85 263
Msa0859390 AT5G22810.1 41.433 321 185 1 25 342 27 347 1.52e-85 263
Msa0859390 AT2G31540.1 40.549 328 187 5 31 353 34 358 1.63e-85 263
Msa0859390 AT1G75880.1 40.923 325 191 1 30 353 50 374 3.75e-85 263
Msa0859390 AT5G45960.1 41.693 319 178 4 25 337 40 356 7.48e-84 259
Msa0859390 AT1G20120.1 39.077 325 198 0 31 355 77 401 3.55e-82 256
Msa0859390 AT3G43570.1 38.037 326 170 4 27 352 25 318 7.61e-82 252
Msa0859390 AT5G45950.1 39.650 343 197 6 15 354 21 356 1.00e-81 253
Msa0859390 AT1G75890.2 40.810 321 188 2 31 349 46 366 3.22e-81 252
Msa0859390 AT2G24560.1 39.752 322 190 4 31 349 33 353 3.57e-81 252
Msa0859390 AT1G75890.3 40.810 321 188 2 31 349 75 395 5.74e-81 252
Msa0859390 AT1G20132.1 37.539 317 198 0 31 347 60 376 4.72e-79 247
Msa0859390 AT2G30220.1 39.403 335 195 5 24 355 25 354 9.63e-79 245
Msa0859390 AT2G30310.1 38.994 318 190 4 31 345 33 349 3.11e-78 244
Msa0859390 AT1G75890.1 39.222 334 188 3 31 349 46 379 4.91e-78 244
Msa0859390 AT5G63170.1 41.801 311 167 4 27 336 23 320 1.15e-76 239
Msa0859390 AT1G58430.1 38.941 321 192 4 25 342 28 347 3.66e-76 239
Msa0859390 AT1G20130.2 36.607 336 197 3 30 352 182 514 1.78e-74 239
Msa0859390 AT1G20130.1 36.607 336 197 3 30 352 202 534 2.53e-74 239
Msa0859390 AT1G20135.1 38.390 323 185 4 15 336 12 321 1.12e-73 231
Msa0859390 AT2G40250.1 36.474 329 201 3 27 349 31 357 2.94e-73 231
Msa0859390 AT1G73610.1 36.765 340 195 4 20 353 18 343 4.55e-71 225
Msa0859390 AT3G43550.1 43.182 264 143 4 30 291 28 286 9.82e-71 223
Msa0859390 AT1G23500.1 37.394 353 204 4 1 349 1 340 1.58e-69 221
Msa0859390 AT1G75910.1 36.000 350 202 6 10 349 1 338 1.63e-67 216
Msa0859390 AT2G24560.2 40.977 266 154 3 31 293 33 298 2.54e-66 212
Msa0859390 AT5G33370.1 35.860 343 210 7 8 346 8 344 2.15e-65 211
Msa0859390 AT4G10950.2 36.050 319 198 6 30 345 69 384 2.33e-65 213
Msa0859390 AT1G75920.2 35.328 351 209 5 3 349 2 338 2.43e-65 211
Msa0859390 AT2G23540.1 34.743 331 207 6 24 346 40 369 6.37e-64 208
Msa0859390 AT1G29670.2 36.676 349 209 8 1 343 67 409 1.60e-63 208
Msa0859390 AT1G29670.1 36.705 346 207 8 4 343 2 341 3.39e-63 206
Msa0859390 AT3G04290.1 34.024 338 215 6 13 346 10 343 1.59e-62 204
Msa0859390 AT4G10950.1 35.423 319 196 6 30 345 69 380 2.20e-62 204
Msa0859390 AT3G50400.1 36.533 323 193 8 30 342 32 352 1.47e-61 202
Msa0859390 AT5G18430.1 32.704 318 210 3 32 346 28 344 6.34e-60 197
Msa0859390 AT1G75920.1 34.615 338 190 5 31 349 23 348 7.17e-60 197
Msa0859390 AT4G28780.1 32.132 333 222 4 16 346 15 345 9.96e-60 197
Msa0859390 AT1G29660.1 35.057 348 215 7 1 343 1 342 1.63e-58 193
Msa0859390 AT5G37690.1 33.127 323 208 6 26 345 21 338 1.93e-58 193
Msa0859390 AT1G75930.1 34.930 355 205 9 3 349 2 338 6.73e-58 191
Msa0859390 AT1G74460.1 33.236 343 217 10 11 348 4 339 1.28e-56 189
Msa0859390 AT5G41890.1 32.670 352 215 10 11 347 14 358 1.28e-55 186
Msa0859390 AT5G15720.1 35.780 327 182 9 31 342 29 342 1.84e-55 186
Msa0859390 AT1G71691.2 35.562 329 198 10 20 343 43 362 2.11e-55 186
Msa0859390 AT5G45670.1 33.234 334 213 7 15 343 12 340 3.97e-55 184
Msa0859390 AT5G08460.1 32.123 358 224 6 2 342 8 363 8.08e-55 184
Msa0859390 AT1G71250.1 34.049 326 207 6 22 343 31 352 4.35e-54 182
Msa0859390 AT5G37690.2 32.198 323 203 7 26 345 21 330 1.53e-53 180
Msa0859390 AT4G18970.1 34.277 318 199 7 31 343 27 339 4.52e-53 179
Msa0859390 AT1G75920.4 34.899 298 178 4 56 349 25 310 1.26e-52 177
Msa0859390 AT4G18970.2 34.385 317 198 7 31 342 27 338 1.98e-52 179
Msa0859390 AT1G33811.1 34.347 329 201 11 25 343 27 350 3.08e-52 177
Msa0859390 AT5G33370.2 35.764 288 176 6 8 291 8 290 6.54e-50 170
Msa0859390 AT1G71120.1 34.049 326 200 6 23 343 22 337 2.03e-48 167
Msa0859390 AT1G75920.3 30.199 351 196 6 3 349 2 307 5.92e-48 164
Msa0859390 AT1G53920.1 31.412 347 218 8 13 345 21 361 1.60e-47 165
Msa0859390 AT2G31550.1 35.616 219 134 4 139 353 2 217 2.17e-45 155
Msa0859390 AT2G19010.1 31.515 330 202 10 29 352 27 338 3.06e-44 155
Msa0859390 AT2G19010.2 31.515 330 202 10 29 352 57 368 4.18e-44 156
Msa0859390 AT5G40990.1 32.609 322 205 6 32 345 37 354 2.09e-43 154
Msa0859390 AT1G53940.2 33.951 324 198 10 32 345 39 356 1.73e-42 152
Msa0859390 AT4G16230.1 34.538 249 156 4 5 248 2 248 2.02e-42 148
Msa0859390 AT3G14225.2 31.889 323 206 7 32 345 37 354 4.76e-42 150
Msa0859390 AT1G71691.3 35.379 277 166 9 20 291 43 311 7.29e-42 149
Msa0859390 AT3G14225.1 32.110 327 204 8 32 345 37 358 1.38e-41 149
Msa0859390 AT5G55050.1 31.627 332 210 10 28 350 35 358 2.56e-41 149
Msa0859390 AT2G19060.1 30.581 327 191 11 30 343 28 331 7.88e-41 147
Msa0859390 AT2G19050.1 30.462 325 194 9 29 343 28 330 9.62e-41 146
Msa0859390 AT5G15720.2 35.507 276 151 8 31 291 29 292 1.69e-40 145
Msa0859390 AT2G03980.2 31.677 322 198 12 31 342 42 351 4.62e-39 142
Msa0859390 AT2G03980.3 31.677 322 198 12 31 342 42 351 4.62e-39 142
Msa0859390 AT2G03980.1 31.677 322 198 12 31 342 42 351 4.62e-39 142
Msa0859390 AT2G03980.4 31.677 322 198 12 31 342 42 351 4.62e-39 142
Msa0859390 AT4G30140.1 31.250 320 196 11 29 343 30 330 1.19e-37 138
Msa0859390 AT2G19050.2 33.600 250 149 8 29 273 28 265 2.00e-34 128
Msa0859390 AT1G53990.1 30.341 323 204 8 32 345 35 345 2.72e-34 130
Msa0859390 AT1G71691.1 31.128 257 165 8 92 343 12 261 8.64e-33 124
Msa0859390 AT5G15720.3 30.827 266 159 7 92 342 56 311 8.75e-33 125
Msa0859390 AT1G53940.1 35.094 265 161 9 32 291 39 297 1.17e-31 121
Msa0859390 AT2G04020.1 36.816 201 116 7 31 227 42 235 1.78e-31 119
Msa0859390 AT2G04020.2 36.364 209 122 7 31 235 42 243 2.92e-31 120
Msa0859390 AT1G54020.2 28.363 342 212 13 15 345 11 330 1.43e-30 120
Msa0859390 AT1G09390.1 28.443 334 207 12 31 347 36 354 1.71e-29 117
Msa0859390 AT1G56670.1 28.701 331 210 12 31 347 39 357 2.43e-29 116
Msa0859390 AT1G28640.1 28.800 375 229 17 5 351 3 367 2.81e-29 116
Msa0859390 AT1G54010.1 27.729 339 220 9 10 340 12 333 1.83e-28 114
Msa0859390 AT1G54030.1 29.582 311 188 12 33 338 53 337 2.39e-28 114
Msa0859390 AT3G14220.1 27.964 329 200 11 27 342 27 331 2.54e-28 113
Msa0859390 AT3G26430.1 29.189 370 218 15 7 345 6 362 4.07e-28 113
Msa0859390 AT1G54790.3 25.205 365 237 10 8 346 8 362 4.37e-28 113
Msa0859390 AT3G27950.1 27.954 347 209 12 26 347 26 356 1.38e-27 112
Msa0859390 AT1G28660.1 29.491 373 219 18 5 346 3 362 1.83e-27 111
Msa0859390 AT3G05180.1 26.685 356 209 12 25 346 29 366 2.77e-27 111
Msa0859390 AT1G28650.1 29.377 337 207 16 29 343 34 361 8.65e-27 109
Msa0859390 AT1G28600.1 29.268 369 217 16 10 346 1 357 9.97e-27 109
Msa0859390 AT1G28610.2 28.415 366 220 15 5 342 2 353 1.24e-26 109
Msa0859390 AT1G31550.2 28.530 347 198 15 32 347 36 363 1.76e-26 108
Msa0859390 AT5G14450.1 25.745 369 233 11 12 350 18 375 1.98e-26 108
Msa0859390 AT5G03610.1 28.829 333 209 12 33 355 44 358 2.10e-26 108
Msa0859390 AT1G28660.2 29.491 373 218 19 5 346 3 361 3.31e-26 108
Msa0859390 AT1G28570.1 29.565 345 198 16 32 347 34 362 3.77e-26 108
Msa0859390 AT1G28670.1 30.084 359 214 17 5 335 3 352 1.28e-25 106
Msa0859390 AT1G67830.1 26.316 342 208 12 31 341 29 357 1.56e-25 106
Msa0859390 AT1G28580.1 28.280 343 203 15 32 346 37 364 1.67e-25 106
Msa0859390 AT1G54000.1 26.393 341 226 9 10 342 12 335 4.40e-25 105
Msa0859390 AT3G62280.1 27.941 340 209 13 27 350 31 350 6.96e-25 104
Msa0859390 AT1G31550.1 27.746 346 199 15 32 347 36 360 8.81e-24 101
Msa0859390 AT2G27360.1 28.488 344 208 14 32 351 33 362 1.46e-23 100
Msa0859390 AT1G54790.1 23.416 363 239 11 13 346 9 361 2.01e-23 100
Msa0859390 AT5G45910.1 29.855 345 214 15 25 346 23 362 2.33e-23 100
Msa0859390 AT4G01130.1 26.016 369 228 14 12 347 10 366 1.83e-22 97.8
Msa0859390 AT3G14210.1 30.211 331 196 14 26 342 28 337 3.25e-22 97.1
Msa0859390 AT3G09930.2 27.479 353 209 14 22 354 29 354 3.42e-21 93.6
Msa0859390 AT3G09930.1 27.479 353 209 14 22 354 29 354 3.42e-21 93.6
Msa0859390 AT1G28590.1 26.100 341 215 13 32 347 36 364 8.56e-21 93.2
Msa0859390 AT3G48460.1 25.485 361 227 13 16 347 15 362 8.63e-20 90.1
Msa0859390 AT1G54790.2 22.365 389 237 13 13 346 9 387 3.20e-19 88.6
Msa0859390 AT1G54030.2 28.992 238 143 9 33 266 53 268 3.35e-19 87.4
Msa0859390 AT4G16220.1 39.496 119 69 2 5 122 2 118 2.02e-17 81.3
Msa0859390 AT1G54020.1 25.000 264 173 8 87 345 1 244 4.30e-17 80.9
Msa0859390 AT1G54020.5 25.000 264 173 8 87 345 1 244 4.30e-17 80.9
Msa0859390 AT1G54020.3 25.000 264 173 8 87 345 1 244 4.30e-17 80.9
Msa0859390 AT1G56670.2 27.306 271 175 11 31 291 39 297 1.34e-16 79.7
Msa0859390 AT1G54020.4 26.562 192 130 5 159 345 10 195 8.11e-16 76.3
Msa0859390 AT4G01130.2 26.269 335 197 13 12 325 10 315 8.25e-16 77.8
Msa0859390 AT4G16233.1 37.143 105 64 2 240 343 6 109 3.63e-15 72.0
Msa0859390 AT4G01130.3 23.810 273 174 8 104 347 13 280 4.22e-15 75.5
Msa0859390 AT5G03980.1 23.176 233 161 7 131 353 94 318 5.92e-15 75.1
Msa0859390 AT5G03600.1 25.228 329 188 14 29 336 11 302 1.16e-14 74.3
Msa0859390 AT5G03600.2 25.228 329 188 14 29 336 46 337 1.21e-14 74.7
Msa0859390 AT1G28580.2 24.739 287 183 12 82 346 8 283 4.00e-14 72.8
Msa0859390 AT2G36325.1 26.625 323 197 15 29 336 44 341 4.23e-14 73.2
Msa0859390 AT1G28570.2 26.316 209 131 9 155 347 89 290 4.22e-12 66.6
Msa0859390 AT1G28570.3 26.829 205 127 9 159 347 2 199 7.34e-12 64.7
Msa0859390 AT3G14210.2 28.272 191 127 6 159 342 22 209 6.30e-11 62.8

Find 96 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTATTATCTATGCAATTTA+TGG 0.107024 5_4:-57726495 Msa0859390:five_prime_UTR
CCACAGATAGAAAGCCTTTA+TGG 0.183346 5_4:+57723712 None:intergenic
GTTAGGAGTATACTTATTTA+TGG 0.203845 5_4:+57726430 None:intergenic
GAAAACACCAATTTCATATC+AGG 0.225456 5_4:+57724142 None:intergenic
ATCAGTACACCTTATGAGTA+TGG 0.279152 5_4:-57724458 Msa0859390:CDS
GATGTGCAACATAATGTAAT+AGG 0.286354 5_4:+57724114 None:intergenic
GTGTATTGTGATGCCCTTCC+TGG 0.317232 5_4:+57724400 None:intergenic
ATGCTTCAAAGTTTGTCTTT+TGG 0.324981 5_4:-57723881 Msa0859390:CDS
AGAATTTGTGCCTGCTTACT+TGG 0.325164 5_4:-57726059 Msa0859390:CDS
GTTCAAGTTTATAGAGATCT+AGG 0.332757 5_4:-57723511 Msa0859390:three_prime_UTR
TGAGTATACGTAAGTGAGTA+TGG 0.336965 5_4:+57726365 None:intergenic
TGGAATGAAGTTGTTGTTCC+CGG 0.361945 5_4:+57726201 None:intergenic
ACTTGTGAAGAAATAAATAT+TGG 0.366952 5_4:+57726408 None:intergenic
GATTTCATAGCAGAATCTTT+TGG 0.368924 5_4:-57726088 Msa0859390:CDS
GGAGCTCCCTGATATGAAAT+TGG 0.378851 5_4:-57724149 Msa0859390:CDS
ATGTGCAACATAATGTAATA+GGG 0.391121 5_4:+57724115 None:intergenic
GATATGAACTTAGATTCTTT+TGG 0.398361 5_4:+57724515 None:intergenic
AAAATCTGAAATATTATACT+TGG 0.402632 5_4:+57726033 None:intergenic
CTATTCCAGCAAGAAAAGTT+TGG 0.411958 5_4:+57724365 None:intergenic
TGCAGTCTGTGATACCATTA+TGG 0.412290 5_4:-57724564 Msa0859390:intron
TCTCCCATTTGAGAATCTTC+CGG 0.414628 5_4:+57726120 None:intergenic
TGAAGAAATAAATATTGGTT+AGG 0.415153 5_4:+57726413 None:intergenic
AATTCGGGTGAATAAGTTGT+TGG 0.416748 5_4:+57726469 None:intergenic
AAGAATCTAAGTTCATATCT+TGG 0.420264 5_4:-57724511 Msa0859390:CDS
TACTCTAATTGCTTCCATAA+TGG 0.422659 5_4:+57724550 None:intergenic
CCATGGGTGGTAACCCTCCC+AGG 0.433970 5_4:+57724293 None:intergenic
CGTTTGTTCCCATACTCATA+AGG 0.435161 5_4:+57724449 None:intergenic
AAATCAACTAATGTCACCTT+TGG 0.437296 5_4:-57726563 Msa0859390:five_prime_UTR
ATAAGGAATCTATATGCTCT+TGG 0.438892 5_4:-57724331 Msa0859390:CDS
AAGTGCTATGTTATTAAAGT+TGG 0.444135 5_4:+57724216 None:intergenic
ACTCATAAGGTGTACTGATT+CGG 0.453701 5_4:+57724462 None:intergenic
TCAGTGGCATGTTGTGCTAC+TGG 0.455491 5_4:-57723957 Msa0859390:CDS
TCTCCGAACACGATTATTGC+TGG 0.455962 5_4:+57726238 None:intergenic
AGATGGGTTATGCATGCAGC+AGG 0.458302 5_4:-57723926 Msa0859390:CDS
CCGTATGGACGTGACTTTCA+AGG 0.470414 5_4:-57726154 Msa0859390:CDS
TGCTACTGGAATGTTTGAGA+TGG 0.473918 5_4:-57723943 Msa0859390:CDS
ATTCGGGTGAATAAGTTGTT+GGG 0.474727 5_4:+57726470 None:intergenic
GGAGACTCCTCCGTTGATGC+CGG 0.479996 5_4:-57726220 Msa0859390:CDS
GCGACCGGAAGATTCTCAAA+TGG 0.482919 5_4:-57726124 Msa0859390:CDS
CTCCAATGGCAAACATCCCA+TGG 0.486462 5_4:+57724276 None:intergenic
CGACCGGAAGATTCTCAAAT+GGG 0.487611 5_4:-57726123 Msa0859390:CDS
AAGGTGTACTGATTCGGATA+TGG 0.497094 5_4:+57724468 None:intergenic
GAGAATTACTATACCATGCC+AGG 0.498472 5_4:-57724418 Msa0859390:CDS
TATTACCACTAAGCTCAATC+AGG 0.501679 5_4:-57724170 Msa0859390:CDS
AAAACACCAATTTCATATCA+GGG 0.503521 5_4:+57724143 None:intergenic
CCTGGGAGGGTTACCACCCA+TGG 0.510734 5_4:-57724293 Msa0859390:CDS
CCATAAAGGCTTTCTATCTG+TGG 0.515732 5_4:-57723712 Msa0859390:three_prime_UTR
TGGTGCTAGAAAGATATCCC+TGG 0.520711 5_4:-57724311 Msa0859390:CDS
ACCCATGGGATGTTTGCCAT+TGG 0.522109 5_4:-57724278 Msa0859390:CDS
AAATTGCTCCGTGCAACCGT+TGG 0.523069 5_4:+57726181 None:intergenic
CTTCCATTCCCACCGCAAAA+CGG 0.523363 5_4:-57726529 Msa0859390:five_prime_UTR
GAGACTCCTCCGTTGATGCC+GGG 0.523625 5_4:-57726219 Msa0859390:CDS
GTTCCAGCAATAATCGTGTT+CGG 0.526753 5_4:-57726241 Msa0859390:CDS
GAGCTCCTGATTGAGCTTAG+TGG 0.529769 5_4:+57724165 None:intergenic
TTGTGATGCCCTTCCTGGCA+TGG 0.538947 5_4:+57724405 None:intergenic
AGTAACATACCATAGAGGTC+AGG 0.548702 5_4:+57724082 None:intergenic
TACTTGGGATCCAAGTAAGC+AGG 0.549355 5_4:+57726049 None:intergenic
AAATTTGTAGTTCTCTCCAA+TGG 0.550093 5_4:+57724262 None:intergenic
ATAAATAGTACTACTACTTG+TGG 0.558506 5_4:-57723774 Msa0859390:three_prime_UTR
CCTTGAAAGTCACGTCCATA+CGG 0.564611 5_4:+57726154 None:intergenic
GATTCTGCTATGAAATCAGT+TGG 0.565554 5_4:+57726094 None:intergenic
TTTCAAGGCGGAAAAGCGAC+CGG 0.566456 5_4:-57726139 Msa0859390:CDS
GCTACTGGAATGTTTGAGAT+GGG 0.566722 5_4:-57723942 Msa0859390:CDS
TTTGAACAAGGCAAGTGCAA+AGG 0.567797 5_4:-57726263 Msa0859390:CDS
GAATAGCTGAGAATTTCATA+AGG 0.571068 5_4:-57724348 Msa0859390:CDS
AAATCTGAAATATTATACTT+GGG 0.571126 5_4:+57726034 None:intergenic
ATTACTATACCATGCCAGGA+AGG 0.575232 5_4:-57724414 Msa0859390:CDS
GTTGTTGTTCCCGGCATCAA+CGG 0.579965 5_4:+57726210 None:intergenic
AGAAAAGTTTGGTACTGTTG+AGG 0.580826 5_4:+57724376 None:intergenic
ACTTCATTCCAACGGTTGCA+CGG 0.585179 5_4:-57726189 Msa0859390:CDS
TCAGTACACCTTATGAGTAT+GGG 0.589424 5_4:-57724457 Msa0859390:CDS
GCATGGTATAGTAATTCTCT+AGG 0.589788 5_4:+57724422 None:intergenic
GTATGGAGTGTGTGTTAAAG+AGG 0.593761 5_4:+57726382 None:intergenic
TTACTATACCATGCCAGGAA+GGG 0.595748 5_4:-57724413 Msa0859390:CDS
ATGGGTTATGCATGCAGCAG+GGG 0.597736 5_4:-57723924 Msa0859390:CDS
CTGGGAGGGTTACCACCCAT+GGG 0.599154 5_4:-57724292 Msa0859390:CDS
GGTGCTAGAAAGATATCCCT+GGG 0.601039 5_4:-57724310 Msa0859390:CDS
TTATGGTGAATGTGCAAAAG+TGG 0.605008 5_4:+57723729 None:intergenic
AAAGAGGCACAAAATGTGAA+AGG 0.607423 5_4:+57726294 None:intergenic
TCCAATGGCAAACATCCCAT+GGG 0.610270 5_4:+57724277 None:intergenic
TAACATTGTTGCAAAGTATG+TGG 0.619153 5_4:-57723829 Msa0859390:CDS
TGGAGTGTGTGTTAAAGAGG+TGG 0.621345 5_4:+57726385 None:intergenic
GATGGGTTATGCATGCAGCA+GGG 0.629763 5_4:-57723925 Msa0859390:CDS
GTTGTTCCCGGCATCAACGG+AGG 0.634142 5_4:+57726213 None:intergenic
CTAGAAAGATATCCCTGGGA+GGG 0.636827 5_4:-57724306 Msa0859390:CDS
AATGGCAAACATCCCATGGG+TGG 0.645847 5_4:+57724280 None:intergenic
AGGGTTTGAATCAGCCTCAG+TGG 0.649535 5_4:-57723973 Msa0859390:CDS
CATGGGTGGTAACCCTCCCA+GGG 0.659719 5_4:+57724294 None:intergenic
GAACAACAACTTCATTCCAA+CGG 0.663264 5_4:-57726197 Msa0859390:CDS
CATTGTTGCAAAGTATGTGG+TGG 0.685608 5_4:-57723826 Msa0859390:CDS
GTTGCAGTAACATACCATAG+AGG 0.695475 5_4:+57724077 None:intergenic
GAAGCAATTAGAGTACTACA+AGG 0.704539 5_4:-57724542 Msa0859390:CDS
ATTTGAAGACGAATACACAA+AGG 0.706835 5_4:+57723564 None:intergenic
AGTAGCACAACATGCCACTG+AGG 0.730566 5_4:+57723959 None:intergenic
GCTAGAAAGATATCCCTGGG+AGG 0.731178 5_4:-57724307 Msa0859390:CDS
TATGGACGTGACTTTCAAGG+CGG 0.774143 5_4:-57726151 Msa0859390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATAAAATAAAAATATTA+TGG - chr5_4:57725332-57725351 Msa0859390:intron 0.0%
!!! AAAATTGTTTTGTTTTTAAT+TGG - chr5_4:57724508-57724527 Msa0859390:CDS 10.0%
!! AATATTTATGAAAACTAATT+TGG - chr5_4:57724810-57724829 Msa0859390:intron 10.0%
!! ATATTTATGAAAACTAATTT+GGG - chr5_4:57724811-57724830 Msa0859390:intron 10.0%
!! GTTAATTCAAAATAAATAAA+TGG - chr5_4:57724950-57724969 Msa0859390:intron 10.0%
!! AGAAATTAAAAAAATTTAGA+GGG + chr5_4:57725047-57725066 None:intergenic 10.0%
!! AAGAAATTAAAAAAATTTAG+AGG + chr5_4:57725048-57725067 None:intergenic 10.0%
!!! AAAATTTTTCATTTTGTTTT+TGG + chr5_4:57725223-57725242 None:intergenic 10.0%
!!! AAATCTGAAATATTATACTT+GGG + chr5_4:57724045-57724064 None:intergenic 15.0%
!!! AAAATCTGAAATATTATACT+TGG + chr5_4:57724046-57724065 None:intergenic 15.0%
!!! CAATTTTTTTTAAACTCATT+TGG + chr5_4:57724495-57724514 None:intergenic 15.0%
!! ACAAATTAATTAAAAGGAAA+TGG + chr5_4:57724912-57724931 None:intergenic 15.0%
!! ATTAATATGAACATAAAGTA+GGG + chr5_4:57725073-57725092 None:intergenic 15.0%
!! TTTATGTTCATATTAATGTA+AGG - chr5_4:57725076-57725095 Msa0859390:intron 15.0%
!!! CTCTAAAAATATAGTAAATT+TGG + chr5_4:57725284-57725303 None:intergenic 15.0%
!!! AATATTTTTCTTTTGTTAAC+AGG - chr5_4:57726083-57726102 Msa0859390:CDS 15.0%
!!! ATATTTTTCTTTTGTTAACA+GGG - chr5_4:57726084-57726103 Msa0859390:CDS 15.0%
!! AGTATTATCTATGCAATTTA+TGG - chr5_4:57723581-57723600 Msa0859390:three_prime_UTR 20.0%
!!! AAGTTTGATCTTTTGAAATT+CGG + chr5_4:57723626-57723645 None:intergenic 20.0%
!!! TGAAGAAATAAATATTGGTT+AGG + chr5_4:57723666-57723685 None:intergenic 20.0%
!! ACTTGTGAAGAAATAAATAT+TGG + chr5_4:57723671-57723690 None:intergenic 20.0%
!!! TACAATACATGTTTAGTTTT+AGG - chr5_4:57724184-57724203 Msa0859390:CDS 20.0%
!!! TTAGTTTTAGGAACTTTTTT+TGG - chr5_4:57724196-57724215 Msa0859390:CDS 20.0%
!! AAAAAAAAAAGTGAAGTAAG+TGG + chr5_4:57724276-57724295 None:intergenic 20.0%
!!! TTTTTTTTCATGCAAGATTT+TGG - chr5_4:57724292-57724311 Msa0859390:CDS 20.0%
!! ATTTGGTCATAAAATTATGA+TGG - chr5_4:57724570-57724589 Msa0859390:intron 20.0%
!! GTGGAAAATATAACTAAAAA+TGG + chr5_4:57724728-57724747 None:intergenic 20.0%
!!! AGTTATATTTTCCACAAATA+TGG - chr5_4:57724733-57724752 Msa0859390:intron 20.0%
!! TCATAAATATTTAAAGACAC+CGG + chr5_4:57724801-57724820 None:intergenic 20.0%
!! TGAAATCAAAATTCACTTTA+TGG + chr5_4:57724994-57725013 None:intergenic 20.0%
!! TCAGTCTCTTAAAAATAAAA+CGG - chr5_4:57725011-57725030 Msa0859390:intron 20.0%
!! CATTAATATGAACATAAAGT+AGG + chr5_4:57725074-57725093 None:intergenic 20.0%
!!! CAAAATGAAAAATTTTTCGA+AGG - chr5_4:57725227-57725246 Msa0859390:intron 20.0%
!!! TTTAGAGTTTAATAAGTTCT+TGG + chr5_4:57725308-57725327 None:intergenic 20.0%
!!! ATTTTAAAAGTATATGTGTG+TGG - chr5_4:57725356-57725375 Msa0859390:intron 20.0%
!! ATTTATAATGTGCTTCATAA+TGG + chr5_4:57726060-57726079 None:intergenic 20.0%
!!! AGAATATAAGTCATTTTGTT+TGG - chr5_4:57726472-57726491 Msa0859390:five_prime_UTR 20.0%
!!! AGTTTGATCTTTTGAAATTC+GGG + chr5_4:57723625-57723644 None:intergenic 25.0%
!! GTTAGGAGTATACTTATTTA+TGG + chr5_4:57723649-57723668 None:intergenic 25.0%
! ACTCAAAAATTTACACAACA+TGG - chr5_4:57723729-57723748 Msa0859390:three_prime_UTR 25.0%
! TGTTCAAATGAAACAAAAAG+AGG + chr5_4:57723801-57723820 None:intergenic 25.0%
!!! CTTTTTGTTTCATTTGAACA+AGG - chr5_4:57723801-57723820 Msa0859390:CDS 25.0%
!! AATATTTCAGATTTTGCAAC+TGG - chr5_4:57724051-57724070 Msa0859390:intron 25.0%
!! ATATTTCAGATTTTGCAACT+GGG - chr5_4:57724052-57724071 Msa0859390:intron 25.0%
!!! TTTTAGGAACTTTTTTTGGT+TGG - chr5_4:57724200-57724219 Msa0859390:CDS 25.0%
! ACTGAAAACAAGAAATGTAA+AGG - chr5_4:57724363-57724382 Msa0859390:CDS 25.0%
! CTGAAAACAAGAAATGTAAA+GGG - chr5_4:57724364-57724383 Msa0859390:CDS 25.0%
! TGAAAACAAGAAATGTAAAG+GGG - chr5_4:57724365-57724384 Msa0859390:CDS 25.0%
! TTGTACAAAAATTGAAGAGA+AGG - chr5_4:57724608-57724627 Msa0859390:intron 25.0%
! TGTACAAAAATTGAAGAGAA+GGG - chr5_4:57724609-57724628 Msa0859390:intron 25.0%
! TTTATACGTTTCCATATTTG+TGG + chr5_4:57724747-57724766 None:intergenic 25.0%
!!! TTTTTGCTATAGTAGAAACA+TGG + chr5_4:57724843-57724862 None:intergenic 25.0%
! CAGTCTCTTAAAAATAAAAC+GGG - chr5_4:57725012-57725031 Msa0859390:intron 25.0%
! ACATTTCTTGAACACAATAT+GGG + chr5_4:57725167-57725186 None:intergenic 25.0%
! TGTCAAAAATTATGTCCATT+AGG - chr5_4:57725195-57725214 Msa0859390:intron 25.0%
! GTCAAAAATTATGTCCATTA+GGG - chr5_4:57725196-57725215 Msa0859390:intron 25.0%
!! GATATGAACTTAGATTCTTT+TGG + chr5_4:57725564-57725583 None:intergenic 25.0%
! AAGAATCTAAGTTCATATCT+TGG - chr5_4:57725565-57725584 Msa0859390:intron 25.0%
!! GAGAGAACTACAAATTTTAT+GGG - chr5_4:57725820-57725839 Msa0859390:intron 25.0%
! AAGTGCTATGTTATTAAAGT+TGG + chr5_4:57725863-57725882 None:intergenic 25.0%
! AAAACACCAATTTCATATCA+GGG + chr5_4:57725936-57725955 None:intergenic 25.0%
! ATGTGCAACATAATGTAATA+GGG + chr5_4:57725964-57725983 None:intergenic 25.0%
!!! ATGTTATTTGTTTTCTCTGT+GGG + chr5_4:57726233-57726252 None:intergenic 25.0%
!!! AATGTTATTTGTTTTCTCTG+TGG + chr5_4:57726234-57726253 None:intergenic 25.0%
! ATAAATAGTACTACTACTTG+TGG - chr5_4:57726302-57726321 Msa0859390:CDS 25.0%
AAATCAACTAATGTCACCTT+TGG - chr5_4:57723513-57723532 Msa0859390:three_prime_UTR 30.0%
! GATTTCATAGCAGAATCTTT+TGG - chr5_4:57723988-57724007 Msa0859390:intron 30.0%
! TATTTCAGATTTTGCAACTG+GGG - chr5_4:57724053-57724072 Msa0859390:intron 30.0%
GTTTGAGTATTAAGAGAAGA+TGG + chr5_4:57724138-57724157 None:intergenic 30.0%
!!! TTCTTGTTTTCAGTTTCACT+TGG + chr5_4:57724357-57724376 None:intergenic 30.0%
!! TCTCTTGTTATTGTTTCTCT+AGG - chr5_4:57724430-57724449 Msa0859390:CDS 30.0%
!! GACACATTTTGAAGATACAA+GGG + chr5_4:57725108-57725127 None:intergenic 30.0%
!! AGACACATTTTGAAGATACA+AGG + chr5_4:57725109-57725128 None:intergenic 30.0%
GACATTTCTTGAACACAATA+TGG + chr5_4:57725168-57725187 None:intergenic 30.0%
ATTGTGTTCAAGAAATGTCA+TGG - chr5_4:57725169-57725188 Msa0859390:intron 30.0%
!!! ATTTTGTTTTTGGTCCCTAA+TGG + chr5_4:57725213-57725232 None:intergenic 30.0%
TACTCTAATTGCTTCCATAA+TGG + chr5_4:57725529-57725548 None:intergenic 30.0%
GAATAGCTGAGAATTTCATA+AGG - chr5_4:57725728-57725747 Msa0859390:intron 30.0%
ATAAGGAATCTATATGCTCT+TGG - chr5_4:57725745-57725764 Msa0859390:intron 30.0%
AAATTTGTAGTTCTCTCCAA+TGG + chr5_4:57725817-57725836 None:intergenic 30.0%
! GGAGAGAACTACAAATTTTA+TGG - chr5_4:57725819-57725838 Msa0859390:intron 30.0%
! ACAAATTTTATGGGTCAGAA+TGG - chr5_4:57725829-57725848 Msa0859390:intron 30.0%
GAAAACACCAATTTCATATC+AGG + chr5_4:57725937-57725956 None:intergenic 30.0%
GATGTGCAACATAATGTAAT+AGG + chr5_4:57725965-57725984 None:intergenic 30.0%
ATAAAAAAACCTGACCTCTA+TGG - chr5_4:57725985-57726004 Msa0859390:CDS 30.0%
! ATGCTTCAAAGTTTGTCTTT+TGG - chr5_4:57726195-57726214 Msa0859390:CDS 30.0%
! TGCTTCAAAGTTTGTCTTTT+GGG - chr5_4:57726196-57726215 Msa0859390:CDS 30.0%
TAACATTGTTGCAAAGTATG+TGG - chr5_4:57726247-57726266 Msa0859390:CDS 30.0%
ATTTGAAGACGAATACACAA+AGG + chr5_4:57726515-57726534 None:intergenic 30.0%
ATTCGGGTGAATAAGTTGTT+GGG + chr5_4:57723609-57723628 None:intergenic 35.0%
AATTCGGGTGAATAAGTTGT+TGG + chr5_4:57723610-57723629 None:intergenic 35.0%
TGAGTATACGTAAGTGAGTA+TGG + chr5_4:57723714-57723733 None:intergenic 35.0%
! AAAGAGGCACAAAATGTGAA+AGG + chr5_4:57723785-57723804 None:intergenic 35.0%
GAACAACAACTTCATTCCAA+CGG - chr5_4:57723879-57723898 Msa0859390:CDS 35.0%
GATTCTGCTATGAAATCAGT+TGG + chr5_4:57723985-57724004 None:intergenic 35.0%
TTGAACACAATATGGGCATA+CGG + chr5_4:57725160-57725179 None:intergenic 35.0%
! TGAAAACATCCTGGGTTTTT+AGG - chr5_4:57725250-57725269 Msa0859390:intron 35.0%
! GATTTAGTTCCTAAAAACCC+AGG + chr5_4:57725262-57725281 None:intergenic 35.0%
! GAAGCAATTAGAGTACTACA+AGG - chr5_4:57725534-57725553 Msa0859390:intron 35.0%
!! ACTCATAAGGTGTACTGATT+CGG + chr5_4:57725617-57725636 None:intergenic 35.0%
ATCAGTACACCTTATGAGTA+TGG - chr5_4:57725618-57725637 Msa0859390:intron 35.0%
TCAGTACACCTTATGAGTAT+GGG - chr5_4:57725619-57725638 Msa0859390:intron 35.0%
GCATGGTATAGTAATTCTCT+AGG + chr5_4:57725657-57725676 None:intergenic 35.0%
AGAAAAGTTTGGTACTGTTG+AGG + chr5_4:57725703-57725722 None:intergenic 35.0%
CTATTCCAGCAAGAAAAGTT+TGG + chr5_4:57725714-57725733 None:intergenic 35.0%
TATTACCACTAAGCTCAATC+AGG - chr5_4:57725906-57725925 Msa0859390:intron 35.0%
!! TATTTGTTTTCTCTGTGGGA+TGG + chr5_4:57726229-57726248 None:intergenic 35.0%
TTATGGTGAATGTGCAAAAG+TGG + chr5_4:57726350-57726369 None:intergenic 35.0%
! CTTTTGCACATTCACCATAA+AGG - chr5_4:57726350-57726369 Msa0859390:exon 35.0%
! GGAAGTTTTCTCTTAGCCAA+AGG + chr5_4:57723532-57723551 None:intergenic 40.0%
! TAGCACAACTAACCGTTTTG+CGG + chr5_4:57723562-57723581 None:intergenic 40.0%
GTATGGAGTGTGTGTTAAAG+AGG + chr5_4:57723697-57723716 None:intergenic 40.0%
TTTGAACAAGGCAAGTGCAA+AGG - chr5_4:57723813-57723832 Msa0859390:CDS 40.0%
GTTCCAGCAATAATCGTGTT+CGG - chr5_4:57723835-57723854 Msa0859390:CDS 40.0%
! TGGAATGAAGTTGTTGTTCC+CGG + chr5_4:57723878-57723897 None:intergenic 40.0%
TCTCCCATTTGAGAATCTTC+CGG + chr5_4:57723959-57723978 None:intergenic 40.0%
AGAATTTGTGCCTGCTTACT+TGG - chr5_4:57724017-57724036 Msa0859390:intron 40.0%
GTACATTTCATCCATCACAC+CGG - chr5_4:57724779-57724798 Msa0859390:intron 40.0%
ATTTAAAGACACCGGTGTGA+TGG + chr5_4:57724793-57724812 None:intergenic 40.0%
TGAACACAATATGGGCATAC+GGG + chr5_4:57725159-57725178 None:intergenic 40.0%
TTTCGAAGGTGAAAACATCC+TGG - chr5_4:57725241-57725260 Msa0859390:intron 40.0%
TTCGAAGGTGAAAACATCCT+GGG - chr5_4:57725242-57725261 Msa0859390:intron 40.0%
GAGAAACAGAGAAGAAGCAA+AGG + chr5_4:57725384-57725403 None:intergenic 40.0%
TGCAGTCTGTGATACCATTA+TGG - chr5_4:57725512-57725531 Msa0859390:intron 40.0%
! GGATATGGTCTCTTTTGCTT+TGG + chr5_4:57725596-57725615 None:intergenic 40.0%
!! AAGGTGTACTGATTCGGATA+TGG + chr5_4:57725611-57725630 None:intergenic 40.0%
CGTTTGTTCCCATACTCATA+AGG + chr5_4:57725630-57725649 None:intergenic 40.0%
GAGAATTACTATACCATGCC+AGG - chr5_4:57725658-57725677 Msa0859390:intron 40.0%
ATTACTATACCATGCCAGGA+AGG - chr5_4:57725662-57725681 Msa0859390:intron 40.0%
TTACTATACCATGCCAGGAA+GGG - chr5_4:57725663-57725682 Msa0859390:intron 40.0%
! CAGTACCAAACTTTTCTTGC+TGG - chr5_4:57725706-57725725 Msa0859390:intron 40.0%
AGTAACATACCATAGAGGTC+AGG + chr5_4:57725997-57726016 None:intergenic 40.0%
GTTGCAGTAACATACCATAG+AGG + chr5_4:57726002-57726021 None:intergenic 40.0%
TGCTACTGGAATGTTTGAGA+TGG - chr5_4:57726133-57726152 Msa0859390:CDS 40.0%
! GCTACTGGAATGTTTGAGAT+GGG - chr5_4:57726134-57726153 Msa0859390:CDS 40.0%
CATTGTTGCAAAGTATGTGG+TGG - chr5_4:57726250-57726269 Msa0859390:CDS 40.0%
CCACAGATAGAAAGCCTTTA+TGG + chr5_4:57726367-57726386 None:intergenic 40.0%
CCATAAAGGCTTTCTATCTG+TGG - chr5_4:57726364-57726383 Msa0859390:five_prime_UTR 40.0%
! ACAACTAACCGTTTTGCGGT+GGG + chr5_4:57723558-57723577 None:intergenic 45.0%
TGGAGTGTGTGTTAAAGAGG+TGG + chr5_4:57723694-57723713 None:intergenic 45.0%
TCTCCGAACACGATTATTGC+TGG + chr5_4:57723841-57723860 None:intergenic 45.0%
ACTTCATTCCAACGGTTGCA+CGG - chr5_4:57723887-57723906 Msa0859390:CDS 45.0%
CCTTGAAAGTCACGTCCATA+CGG + chr5_4:57723925-57723944 None:intergenic 45.0%
TATGGACGTGACTTTCAAGG+CGG - chr5_4:57723925-57723944 Msa0859390:CDS 45.0%
CGACCGGAAGATTCTCAAAT+GGG - chr5_4:57723953-57723972 Msa0859390:CDS 45.0%
TACTTGGGATCCAAGTAAGC+AGG + chr5_4:57724030-57724049 None:intergenic 45.0%
! AGTTTTGCTTCTGCTGCTAC+TGG - chr5_4:57724078-57724097 Msa0859390:intron 45.0%
GAACACAATATGGGCATACG+GGG + chr5_4:57725158-57725177 None:intergenic 45.0%
! TGGTGCTAGAAAGATATCCC+TGG - chr5_4:57725765-57725784 Msa0859390:intron 45.0%
GGTGCTAGAAAGATATCCCT+GGG - chr5_4:57725766-57725785 Msa0859390:intron 45.0%
CTAGAAAGATATCCCTGGGA+GGG - chr5_4:57725770-57725789 Msa0859390:intron 45.0%
TCCAATGGCAAACATCCCAT+GGG + chr5_4:57725802-57725821 None:intergenic 45.0%
GGAGCTCCCTGATATGAAAT+TGG - chr5_4:57725927-57725946 Msa0859390:intron 45.0%
!!! GTTTTAAAAATTAAAAAATT+TGG - chr5_4:57724553-57724572 Msa0859390:CDS 5.0%
!!! TTTTATACAAATTAATTAAA+AGG + chr5_4:57724918-57724937 None:intergenic 5.0%
CTTCCATTCCCACCGCAAAA+CGG - chr5_4:57723547-57723566 Msa0859390:three_prime_UTR 50.0%
! TAACCGTTTTGCGGTGGGAA+TGG + chr5_4:57723553-57723572 None:intergenic 50.0%
! CACAACTAACCGTTTTGCGG+TGG + chr5_4:57723559-57723578 None:intergenic 50.0%
! GTTGTTGTTCCCGGCATCAA+CGG + chr5_4:57723869-57723888 None:intergenic 50.0%
AAATTGCTCCGTGCAACCGT+TGG + chr5_4:57723898-57723917 None:intergenic 50.0%
! CGGAGCAATTTTCAGCCGTA+TGG - chr5_4:57723907-57723926 Msa0859390:CDS 50.0%
CCGTATGGACGTGACTTTCA+AGG - chr5_4:57723922-57723941 Msa0859390:CDS 50.0%
TTTCAAGGCGGAAAAGCGAC+CGG - chr5_4:57723937-57723956 Msa0859390:CDS 50.0%
GCGACCGGAAGATTCTCAAA+TGG - chr5_4:57723952-57723971 Msa0859390:CDS 50.0%
GTGTATTGTGATGCCCTTCC+TGG + chr5_4:57725679-57725698 None:intergenic 50.0%
GCTAGAAAGATATCCCTGGG+AGG - chr5_4:57725769-57725788 Msa0859390:intron 50.0%
AATGGCAAACATCCCATGGG+TGG + chr5_4:57725799-57725818 None:intergenic 50.0%
ACCCATGGGATGTTTGCCAT+TGG - chr5_4:57725798-57725817 Msa0859390:intron 50.0%
CTCCAATGGCAAACATCCCA+TGG + chr5_4:57725803-57725822 None:intergenic 50.0%
GAGCTCCTGATTGAGCTTAG+TGG + chr5_4:57725914-57725933 None:intergenic 50.0%
AGGGTTTGAATCAGCCTCAG+TGG - chr5_4:57726103-57726122 Msa0859390:CDS 50.0%
AGTAGCACAACATGCCACTG+AGG + chr5_4:57726120-57726139 None:intergenic 50.0%
TCAGTGGCATGTTGTGCTAC+TGG - chr5_4:57726119-57726138 Msa0859390:CDS 50.0%
!! AGATGGGTTATGCATGCAGC+AGG - chr5_4:57726150-57726169 Msa0859390:CDS 50.0%
!! GATGGGTTATGCATGCAGCA+GGG - chr5_4:57726151-57726170 Msa0859390:CDS 50.0%
! ATGGGTTATGCATGCAGCAG+GGG - chr5_4:57726152-57726171 Msa0859390:CDS 50.0%
TTGTGATGCCCTTCCTGGCA+TGG + chr5_4:57725674-57725693 None:intergenic 55.0%
GGAGACTCCTCCGTTGATGC+CGG - chr5_4:57723856-57723875 Msa0859390:CDS 60.0%
GAGACTCCTCCGTTGATGCC+GGG - chr5_4:57723857-57723876 Msa0859390:CDS 60.0%
GTTGTTCCCGGCATCAACGG+AGG + chr5_4:57723866-57723885 None:intergenic 60.0%
CATGGGTGGTAACCCTCCCA+GGG + chr5_4:57725785-57725804 None:intergenic 60.0%
CTGGGAGGGTTACCACCCAT+GGG - chr5_4:57725784-57725803 Msa0859390:intron 60.0%
CCATGGGTGGTAACCCTCCC+AGG + chr5_4:57725786-57725805 None:intergenic 65.0%
CCTGGGAGGGTTACCACCCA+TGG - chr5_4:57725783-57725802 Msa0859390:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 57723511 57726587 57723511 ID=Msa0859390;Name=Msa0859390
chr5_4 mRNA 57723511 57726587 57723511 ID=Msa0859390-mRNA-1;Parent=Msa0859390;Name=Msa0859390-mRNA-1;_AED=0.04;_eAED=0.04;_QI=237|1|1|1|1|1|3|286|355
chr5_4 exon 57723511 57723993 57723511 ID=Msa0859390-mRNA-1:exon:17586;Parent=Msa0859390-mRNA-1
chr5_4 exon 57724092 57724581 57724092 ID=Msa0859390-mRNA-1:exon:17585;Parent=Msa0859390-mRNA-1
chr5_4 exon 57725970 57726587 57725970 ID=Msa0859390-mRNA-1:exon:17584;Parent=Msa0859390-mRNA-1
chr5_4 five_prime_UTR 57726351 57726587 57726351 ID=Msa0859390-mRNA-1:five_prime_utr;Parent=Msa0859390-mRNA-1
chr5_4 CDS 57725970 57726350 57725970 ID=Msa0859390-mRNA-1:cds;Parent=Msa0859390-mRNA-1
chr5_4 CDS 57724092 57724581 57724092 ID=Msa0859390-mRNA-1:cds;Parent=Msa0859390-mRNA-1
chr5_4 CDS 57723797 57723993 57723797 ID=Msa0859390-mRNA-1:cds;Parent=Msa0859390-mRNA-1
chr5_4 three_prime_UTR 57723511 57723796 57723511 ID=Msa0859390-mRNA-1:three_prime_utr;Parent=Msa0859390-mRNA-1
Gene Sequence

>Msa0859390

ATGGAATTTCAATCAAAGCTATTTGCATTATGCTCCTTTCACATTTTGTGCCTCTTTTTGTTTCATTTGAACAAGGCAAGTGCAAAGGTTCCAGCAATAATCGTGTTCGGAGACTCCTCCGTTGATGCCGGGAACAACAACTTCATTCCAACGGTTGCACGGAGCAATTTTCAGCCGTATGGACGTGACTTTCAAGGCGGAAAAGCGACCGGAAGATTCTCAAATGGGAGAATACCAACTGATTTCATAGCAGAATCTTTTGGTATAAAAGAATTTGTGCCTGCTTACTTGGATCCCAAGTATAATATTTCAGATTTTGCAACTGGGGTCAGTTTTGCTTCTGCTGCTACTGGTTATGATAATGCAACTTCAGATGTACTTTCTGTGATACCATTATGGAAGCAATTAGAGTACTACAAGGACTACCAAAAGAATCTAAGTTCATATCTTGGTGAAACCAAAGCAAAAGAGACCATATCCGAATCAGTACACCTTATGAGTATGGGAACAAACGATTTCCTAGAGAATTACTATACCATGCCAGGAAGGGCATCACAATACACACCTCAACAGTACCAAACTTTTCTTGCTGGAATAGCTGAGAATTTCATAAGGAATCTATATGCTCTTGGTGCTAGAAAGATATCCCTGGGAGGGTTACCACCCATGGGATGTTTGCCATTGGAGAGAACTACAAATTTTATGGGTCAGAATGGTTGTGTTGCCAACTTTAATAACATAGCACTTGAGTTCAATGATAAGCTCAAGAATATTACCACTAAGCTCAATCAGGAGCTCCCTGATATGAAATTGGTGTTTTCAAATCCCTATTACATTATGTTGCACATCATAAAAAAACCTGACCTCTATGGGTTTGAATCAGCCTCAGTGGCATGTTGTGCTACTGGAATGTTTGAGATGGGTTATGCATGCAGCAGGGGCAGCATGTTCAGTTGCACAGATGCTTCAAAGTTTGTCTTTTGGGACTCTTTCCATCCCACAGAGAAAACAAATAACATTGTTGCAAAGTATGTGGTGGAGCATGTGTTAGCTCAATTTTTAGAATAA
Protein sequence

>Msa0859390

MEFQSKLFALCSFHILCLFLFHLNKASAKVPAIIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFQGGKATGRFSNGRIPTDFIAESFGIKEFVPAYLDPKYNISDFATGVSFASAATGYDNATSDVLSVIPLWKQLEYYKDYQKNLSSYLGETKAKETISESVHLMSMGTNDFLENYYTMPGRASQYTPQQYQTFLAGIAENFIRNLYALGARKISLGGLPPMGCLPLERTTNFMGQNGCVANFNNIALEFNDKLKNITTKLNQELPDMKLVFSNPYYIMLHIIKKPDLYGFESASVACCATGMFEMGYACSRGSMFSCTDASKFVFWDSFHPTEKTNNIVAKYVVEHVLAQFLE*