AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0955310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0955310 MtrunA17_Chr6g0480631 92.986 499 7 2 1 471 1 499 0.0 945
Msa0955310 MtrunA17_Chr3g0109901 68.885 511 116 6 1 471 1 508 0.0 704
Msa0955310 MtrunA17_Chr8g0375301 66.094 466 121 4 17 445 14 479 0.0 625
Msa0955310 MtrunA17_Chr5g0433931 66.093 407 115 3 88 471 3 409 0.0 554
Msa0955310 MtrunA17_Chr5g0433921 75.862 87 18 1 1 87 1 84 6.30e-40 139
Msa0955310 MtrunA17_Chr7g0222381 26.837 313 199 9 113 408 200 499 7.28e-16 80.1
Msa0955310 MtrunA17_Chr5g0432951 76.923 39 9 0 227 265 15 53 3.12e-15 71.2
Msa0955310 MtrunA17_Chr5g0432961 52.174 69 33 0 347 415 13 81 1.92e-14 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0955310 AT2G02010.2 72.121 495 101 4 1 467 53 538 0.0 733
Msa0955310 AT2G02010.1 72.121 495 101 4 1 467 1 486 0.0 733
Msa0955310 AT3G17760.2 72.597 489 99 5 14 471 10 494 0.0 716
Msa0955310 AT3G17760.1 72.597 489 99 5 14 471 10 494 0.0 716
Msa0955310 AT5G17330.1 70.923 509 103 7 1 471 1 502 0.0 715
Msa0955310 AT2G02000.1 70.040 494 111 4 1 466 1 485 0.0 713
Msa0955310 AT1G65960.2 70.858 501 109 6 1 471 1 494 0.0 704
Msa0955310 AT1G65960.1 72.283 368 82 4 121 471 1 365 0.0 531
Msa0955310 AT1G65960.3 72.283 368 82 4 121 471 1 365 0.0 531
Msa0955310 AT1G65960.4 72.283 368 82 4 121 471 1 365 0.0 531
Msa0955310 AT3G17720.1 65.806 155 35 2 88 227 34 185 1.11e-63 205
Msa0955310 AT1G27980.1 25.228 329 211 10 100 406 185 500 2.20e-12 69.7

Find 140 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTGTCTCCTTGTTCTTCT+TGG 0.118106 6_3:-59318343 None:intergenic
CATCTGTGTTGCAGCCATTT+TGG 0.165886 6_3:+59318266 Msa0955310:CDS
ACATGGGTAAATAGTCATTT+TGG 0.217526 6_3:-59315534 None:intergenic
TTCCATTGTTGCTTTATCTA+TGG 0.221404 6_3:+59319585 Msa0955310:three_prime_UTR
CTGGTATTGGTTGGGTTGTT+TGG 0.223066 6_3:+59318505 Msa0955310:CDS
TTCTCTACCCTGATCTTCTA+TGG 0.227683 6_3:+59318418 Msa0955310:CDS
TTCATTCATTCATATAAATA+TGG 0.237410 6_3:-59319640 None:intergenic
CTCAATACTACCAATTTATA+CGG 0.248455 6_3:+59318784 Msa0955310:CDS
AGTTGAAGAAATCACCATTT+TGG 0.255929 6_3:-59315716 None:intergenic
ATCTGATATGCTGCATCTTT+TGG 0.270173 6_3:-59315942 None:intergenic
AACCGCAACATGAGCATCTT+TGG 0.297910 6_3:-59319364 None:intergenic
CGAAGCCAAGCCGTATAAAT+TGG 0.316347 6_3:-59318794 None:intergenic
CCGTCCTCCGAGTGGTGATT+AGG 0.325686 6_3:+59319250 Msa0955310:CDS
TGTGCAAGTCATGGGATAAA+AGG 0.332953 6_3:+59315045 None:intergenic
TTCTAGATACGTGCGTGAAC+AGG 0.356943 6_3:+59315786 Msa0955310:CDS
AGAGTCAAGCTGAGATTCTT+AGG 0.358334 6_3:+59319430 Msa0955310:CDS
CGGAAATCCCATAGAAGATC+AGG 0.359620 6_3:-59318426 None:intergenic
GGTCTTGTTTACCCTGGTAT+TGG 0.363471 6_3:+59318492 Msa0955310:CDS
CTCGCAGCATCCACATGAAT+TGG 0.372368 6_3:-59318375 None:intergenic
GAGGCATAAAGCTGACTTGC+CGG 0.372412 6_3:+59318527 Msa0955310:CDS
AGTCAGCGTTGAACCCAAAA+TGG 0.376738 6_3:-59318280 None:intergenic
AATGATGAGTTGATGTTAGA+TGG 0.378531 6_3:+59315969 Msa0955310:CDS
CATCTATTCAATGCTCCTAT+TGG 0.380720 6_3:+59316820 Msa0955310:CDS
GTTTGTGGGTGAAGTAGATT+TGG 0.381006 6_3:-59315079 None:intergenic
TGGCTTCATTTGTTACTACT+TGG 0.383718 6_3:+59316009 Msa0955310:CDS
CGTCCTCCGAGTGGTGATTA+GGG 0.385244 6_3:+59319251 Msa0955310:CDS
CAGAACTCATCCAACCAAAA+TGG 0.395608 6_3:+59315702 Msa0955310:exon
ACCATTTCAACAGCTTTCAA+TGG 0.408300 6_3:-59318231 None:intergenic
CAAGCTACATTATGTGTCAT+AGG 0.414559 6_3:-59315363 None:intergenic
TACTACCAATTTATACGGCT+TGG 0.415144 6_3:+59318789 Msa0955310:CDS
TGTGTGATCACTTATTCTTA+AGG 0.420391 6_3:+59315554 Msa0955310:five_prime_UTR
GCAGACCATTTAAGAAAATA+CGG 0.420756 6_3:+59319180 Msa0955310:CDS
TTGTTTACCCTGGTATTGGT+TGG 0.425703 6_3:+59318496 Msa0955310:CDS
AACGCTGACTGGAGAGTTTG+AGG 0.427297 6_3:+59318293 Msa0955310:CDS
AAAATACGGGTGGATTGTTC+CGG 0.427853 6_3:+59319194 Msa0955310:CDS
GTCTCTACAACTATTTATAG+AGG 0.430459 6_3:+59315215 Msa0955310:five_prime_UTR
TGTTTACCCTGGTATTGGTT+GGG 0.431991 6_3:+59318497 Msa0955310:CDS
GATAAGCCTAACATAGTTAC+CGG 0.434270 6_3:+59316961 Msa0955310:CDS
TTAGCTCCGGTAACTATGTT+AGG 0.434904 6_3:-59316967 None:intergenic
GAGAAATTCAATGTGAAAGT+TGG 0.439670 6_3:-59318591 None:intergenic
AAGGAAGGAATTGAGAAAAC+AGG 0.440850 6_3:+59319069 Msa0955310:CDS
AAGCTGAGATTCTTAGGTAC+TGG 0.444819 6_3:+59319436 Msa0955310:CDS
ATTTATACGGCTTGGCTTCG+AGG 0.445868 6_3:+59318797 Msa0955310:CDS
TTCATTTGTTACTACTTGGA+TGG 0.447228 6_3:+59316013 Msa0955310:CDS
ATGATGTTGATCATGTTTCA+AGG 0.449196 6_3:-59315105 None:intergenic
TGGAAAACCAAGGCTTAACT+TGG 0.451331 6_3:+59315989 Msa0955310:CDS
TACTGGAAGAAGCTTGTTGA+TGG 0.452812 6_3:+59319453 Msa0955310:CDS
GCAGTTTCCTCTGCACCAAT+AGG 0.455267 6_3:-59316835 None:intergenic
CGAATGAGCAACGCTATGTT+GGG 0.460650 6_3:-59315263 None:intergenic
TCTCTACCCTGATCTTCTAT+GGG 0.463816 6_3:+59318419 Msa0955310:CDS
ATGGGATTTCCGTTTGCCAT+TGG 0.465556 6_3:+59318437 Msa0955310:CDS
ACTATGTTAGGCTTATCATA+AGG 0.466884 6_3:-59316955 None:intergenic
CTTGTTGATGGCAAGAGAGT+TGG 0.470062 6_3:+59319465 Msa0955310:CDS
GTATTGGTTGGGTTGTTTGG+AGG 0.473665 6_3:+59318508 Msa0955310:CDS
AATGAAGCCAAGTTAAGCCT+TGG 0.475959 6_3:-59315996 None:intergenic
CATAATTGCTAGGTTTATTG+AGG 0.476798 6_3:-59315305 None:intergenic
GCATATATTTGATGTGTGTA+AGG 0.480662 6_3:+59319558 Msa0955310:three_prime_UTR
GCAGTAGGTGTTGGAACTGT+AGG 0.480901 6_3:+59316856 Msa0955310:CDS
TCTTTGGAATTGATAGAACT+TGG 0.481455 6_3:-59319348 None:intergenic
CAAGAGAGTTGGAGCATGCT+AGG 0.485182 6_3:+59319476 Msa0955310:CDS
CAAACAACCCAACCAATACC+AGG 0.491052 6_3:-59318504 None:intergenic
GGAGGATTTCAGCTGTAGCT+TGG 0.492243 6_3:+59319272 Msa0955310:CDS
TCCATTGAAAGCTGTTGAAA+TGG 0.494508 6_3:+59318230 Msa0955310:CDS
TATGTCAGAAACAAGTCTTT+CGG 0.499448 6_3:-59319295 None:intergenic
AAAATTGTCTCCAAGGACAT+AGG 0.500052 6_3:+59319099 Msa0955310:CDS
ATGTTTCAAGGATTGTTTGT+GGG 0.500425 6_3:-59315093 None:intergenic
ACGAATGAGCAACGCTATGT+TGG 0.509959 6_3:-59315264 None:intergenic
GAAATAACATGTGCAAGTCA+TGG 0.510606 6_3:+59315036 None:intergenic
TGCGTCCGCTGGCATTGTGT+AGG 0.512284 6_3:-59319217 None:intergenic
AAAGCCACTCACAACAATCA+AGG 0.512318 6_3:-59319527 None:intergenic
AAGGTTTAAAATTGTCTCCA+AGG 0.518110 6_3:+59319092 Msa0955310:CDS
TCCGCTGGCATTGTGTAGGC+CGG 0.520444 6_3:-59319213 None:intergenic
ACTGATCTTTGTGAAGATAG+AGG 0.525765 6_3:-59315616 None:intergenic
CTCCATAGATAAAGCAACAA+TGG 0.526759 6_3:-59319587 None:intergenic
AAGTGGCACACCTATGTCCT+TGG 0.528819 6_3:-59319109 None:intergenic
GTCATCAGAGGCAATAATGC+TGG 0.532016 6_3:+59316879 Msa0955310:CDS
TGAGTGTGATAAGCTTATCA+TGG 0.535116 6_3:+59316040 Msa0955310:CDS
GCTGCTGTCTTTCAGAGAGA+AGG 0.536335 6_3:-59319136 None:intergenic
AGAAGATCAGGGTAGAGAAA+CGG 0.536404 6_3:-59318414 None:intergenic
GAGGAAACTGCAGTAGGTGT+TGG 0.536508 6_3:+59316847 Msa0955310:CDS
ATCAACCTGCACATTAGCTC+CGG 0.537707 6_3:-59316980 None:intergenic
CATGTTTCAAGGATTGTTTG+TGG 0.542523 6_3:-59315094 None:intergenic
CAGTAGGTGTTGGAACTGTA+GGG 0.543728 6_3:+59316857 Msa0955310:CDS
ACCAAGAAGAACAAGGAGAC+AGG 0.547623 6_3:+59318342 Msa0955310:CDS
AAATGTGATGGAAAATTGCT+TGG 0.550366 6_3:+59319029 Msa0955310:CDS
AATGTTAGCGGTCACAAGTA+CGG 0.552630 6_3:+59318471 Msa0955310:CDS
AAATAACATGTGCAAGTCAT+GGG 0.553359 6_3:+59315037 None:intergenic
GTTCATAGATGCATAGACAT+TGG 0.558039 6_3:-59319618 None:intergenic
CACAGAGGATTACTATGTGA+TGG 0.560082 6_3:+59318206 Msa0955310:CDS
AGAAGAACAAGGAGACAGGA+TGG 0.560336 6_3:+59318346 Msa0955310:CDS
AAACCCTTGATTGTTGTGAG+TGG 0.565159 6_3:+59319523 Msa0955310:three_prime_UTR
GTGAAAAGTATCAATGTTAG+CGG 0.565895 6_3:+59318459 Msa0955310:CDS
AGTTGTATGACATAATTGCT+AGG 0.566470 6_3:-59315315 None:intergenic
TTCACATTGAATTTCTCCAA+AGG 0.571801 6_3:+59318597 Msa0955310:CDS
CAATGCTCCTATTGGTGCAG+AGG 0.575155 6_3:+59316828 Msa0955310:CDS
TTCCAAAGATGCTCATGTTG+CGG 0.577794 6_3:+59319362 Msa0955310:CDS
TTCATCATAAATGTATGCAA+AGG 0.581572 6_3:-59319680 None:intergenic
CAAAATGGCTGCAACACAGA+TGG 0.582491 6_3:-59318265 None:intergenic
TCAGAGGCAATAATGCTGGC+TGG 0.584457 6_3:+59316883 Msa0955310:CDS
GTTGCTCATTCGTCAAGAAG+TGG 0.586479 6_3:+59315274 Msa0955310:five_prime_UTR
GGCGAACACAAGAATTCTGA+AGG 0.590261 6_3:+59319050 Msa0955310:CDS
AACACAAGAATTCTGAAGGA+AGG 0.596220 6_3:+59319054 Msa0955310:CDS
ACCATTTAAGAAAATACGGG+TGG 0.597652 6_3:+59319184 Msa0955310:CDS
CAGACCATTTAAGAAAATAC+GGG 0.597766 6_3:+59319181 Msa0955310:CDS
CCTAATCACCACTCGGAGGA+CGG 0.599220 6_3:-59319250 None:intergenic
ATGATAAGCTTATCACACTC+AGG 0.609818 6_3:-59316038 None:intergenic
TCAACTGTCACACATCCAGA+TGG 0.610258 6_3:+59315733 Msa0955310:CDS
AAGCCACTCACAACAATCAA+GGG 0.612864 6_3:-59319526 None:intergenic
GATCACTTATTCTTAAGGAG+TGG 0.615220 6_3:+59315559 Msa0955310:five_prime_UTR
AAGGAATTGAGAAAACAGGA+AGG 0.618569 6_3:+59319073 Msa0955310:CDS
TTGCTCATTCGTCAAGAAGT+GGG 0.620054 6_3:+59315275 Msa0955310:five_prime_UTR
TCTTTCATAAAATCAAGTAG+TGG 0.621670 6_3:+59315592 Msa0955310:five_prime_UTR
GAAGAACAAGGAGACAGGAT+GGG 0.623633 6_3:+59318347 Msa0955310:CDS
GGAAATCCCATAGAAGATCA+GGG 0.625993 6_3:-59318425 None:intergenic
AGTTACCGGAGCTAATGTGC+AGG 0.628397 6_3:+59316975 Msa0955310:CDS
CATGTGGATGCTGCGAGCGG+TGG 0.629625 6_3:+59318381 Msa0955310:CDS
ATGGGATACTCCAATTCATG+TGG 0.632127 6_3:+59318365 Msa0955310:CDS
TTATAGAGGACTAATAATGT+CGG 0.635631 6_3:+59315229 Msa0955310:five_prime_UTR
AAGTACGGTCTTGTTTACCC+TGG 0.636562 6_3:+59318486 Msa0955310:CDS
TAAGAATAAGTGATCACACA+TGG 0.643620 6_3:-59315551 None:intergenic
TTCAGAGAGAAGGCTACAAG+TGG 0.654016 6_3:-59319126 None:intergenic
AAAACTGTTGTCGATCGATG+AGG 0.657169 6_3:-59315406 None:intergenic
GGTGCAGAGGAAACTGCAGT+AGG 0.659345 6_3:+59316841 Msa0955310:CDS
AATCCTCCCTAATCACCACT+CGG 0.661532 6_3:-59319257 None:intergenic
CCTCCGAGTGGTGATTAGGG+AGG 0.671048 6_3:+59319254 Msa0955310:CDS
TGGAACTGTAGGGTCATCAG+AGG 0.671933 6_3:+59316867 Msa0955310:CDS
AAGAATAAGTGATCACACAT+GGG 0.672044 6_3:-59315550 None:intergenic
GTAACAGCGAGGTGTAGAGT+CGG 0.678953 6_3:+59315508 Msa0955310:five_prime_UTR
GCTTCTTACCAAGAAGAACA+AGG 0.684448 6_3:+59318335 Msa0955310:CDS
CAGACTAAGAGAAAATCAGA+AGG 0.687264 6_3:+59316928 Msa0955310:CDS
GTGCTATTATATTCACACAC+CGG 0.687463 6_3:-59316798 None:intergenic
TGATGTTAGATGGAAAACCA+AGG 0.691803 6_3:+59315979 Msa0955310:CDS
ATTCATGTGGATGCTGCGAG+CGG 0.696037 6_3:+59318378 Msa0955310:CDS
AAACAACCCAACCAATACCA+GGG 0.700278 6_3:-59318503 None:intergenic
CAAAGATCATTGTAACAGCG+AGG 0.709268 6_3:+59315497 Msa0955310:five_prime_UTR
TCCGGCCTACACAATGCCAG+CGG 0.712880 6_3:+59319212 Msa0955310:CDS
TATCGCGAGTGAGACAAGTG+AGG 0.713496 6_3:+59319386 Msa0955310:CDS
CCTCCCTAATCACCACTCGG+AGG 0.723923 6_3:-59319254 None:intergenic
TCATAAACTAATCCACACTG+AGG 0.756505 6_3:+59315124 Msa0955310:five_prime_UTR
AAAGGAAGTGAAACTCACAG+AGG 0.773932 6_3:+59318191 Msa0955310:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTGTTTTTTTAAGAAAAAA+AGG - chr6_3:59315827-59315846 None:intergenic 15.0%
!!! ATACAAAATCTTAATTTTTC+TGG - chr6_3:59317268-59317287 None:intergenic 15.0%
!! TTCATTCATTCATATAAATA+TGG - chr6_3:59319643-59319662 None:intergenic 15.0%
!!! AATGTTTTAGCAGTAAATTT+TGG + chr6_3:59315193-59315212 Msa0955310:five_prime_UTR 20.0%
!!! GATTTTATGAAAGAAAAAAG+AGG - chr6_3:59315586-59315605 None:intergenic 20.0%
!!! ATATGTTTATGTGTTGATAT+AGG + chr6_3:59315895-59315914 Msa0955310:intron 20.0%
!! TAACAAGAATTATGTTGATA+TGG + chr6_3:59316070-59316089 Msa0955310:intron 20.0%
!!! TTGATCAAGATTTTAAATTG+TGG + chr6_3:59316146-59316165 Msa0955310:intron 20.0%
!! AATTATTATTGCACAGTAAA+AGG + chr6_3:59316409-59316428 Msa0955310:intron 20.0%
!! ATTATTATTGCACAGTAAAA+GGG + chr6_3:59316410-59316429 Msa0955310:intron 20.0%
!!! GGGAAAATATCATTTTTTAA+TGG + chr6_3:59316555-59316574 Msa0955310:intron 20.0%
!!! TTGTAAGTATCAAATTTTGA+GGG - chr6_3:59316588-59316607 None:intergenic 20.0%
!!! TTTTTTAGATCTTTTGTGTT+TGG + chr6_3:59316612-59316631 Msa0955310:intron 20.0%
!! CTGTTACAATTTAAATATCT+TGG + chr6_3:59316683-59316702 Msa0955310:intron 20.0%
!! ATATTTGTTCAACAAAATGA+AGG - chr6_3:59317686-59317705 None:intergenic 20.0%
!! TCAAGTAAATATATTACCTT+TGG - chr6_3:59318616-59318635 None:intergenic 20.0%
!! CAATTTATGACAAAATTCAA+AGG - chr6_3:59318645-59318664 None:intergenic 20.0%
!!! CTTTGAATTTTGTCATAAAT+TGG + chr6_3:59318643-59318662 Msa0955310:intron 20.0%
!! TAAATACAAAGCAACATTAA+GGG - chr6_3:59318737-59318756 None:intergenic 20.0%
!! ATGTATAAGAAAACAAGTAA+CGG - chr6_3:59318977-59318996 None:intergenic 20.0%
! CTACTGTTTGAAGAAAAATT+TGG - chr6_3:59315167-59315186 None:intergenic 25.0%
! TTATAGAGGACTAATAATGT+CGG + chr6_3:59315229-59315248 Msa0955310:five_prime_UTR 25.0%
! TCTTTCATAAAATCAAGTAG+TGG + chr6_3:59315592-59315611 Msa0955310:five_prime_UTR 25.0%
! AATAAGACTAAGTACATGTT+TGG + chr6_3:59316215-59316234 Msa0955310:intron 25.0%
!!! GATCAAGACTTTTAAAGAAA+AGG - chr6_3:59316323-59316342 None:intergenic 25.0%
! CATAAGTGTACTTATTTATC+TGG - chr6_3:59316368-59316387 None:intergenic 25.0%
! CAGATAAATAAGTACACTTA+TGG + chr6_3:59316366-59316385 Msa0955310:intron 25.0%
!!! AAGTTGCTTTTTTGAAGAAA+GGG + chr6_3:59316535-59316554 Msa0955310:intron 25.0%
!! GTTGTAAGTATCAAATTTTG+AGG - chr6_3:59316589-59316608 None:intergenic 25.0%
!!! AATTTTGATTCTACGATACT+GGG - chr6_3:59317788-59317807 None:intergenic 25.0%
!! TTAAAGTGATTGTCGTATTT+TGG + chr6_3:59317816-59317835 Msa0955310:intron 25.0%
! TTAAACGACATTAAACATAG+AGG - chr6_3:59318117-59318136 None:intergenic 25.0%
!! GTTTTTCACATCAATTATCT+TGG + chr6_3:59318558-59318577 Msa0955310:CDS 25.0%
! GTAATATATTTACTTGACAC+AGG + chr6_3:59318619-59318638 Msa0955310:intron 25.0%
! GTAAATACAAAGCAACATTA+AGG - chr6_3:59318738-59318757 None:intergenic 25.0%
! CTCAATACTACCAATTTATA+CGG + chr6_3:59318784-59318803 Msa0955310:CDS 25.0%
!!! TGTTATTTTTCTTGCTCTTA+AGG + chr6_3:59318999-59319018 Msa0955310:intron 25.0%
!!! GTTATTTTTCTTGCTCTTAA+GGG + chr6_3:59319000-59319019 Msa0955310:intron 25.0%
! TTCATCATAAATGTATGCAA+AGG - chr6_3:59319683-59319702 None:intergenic 25.0%
ATGTTTCAAGGATTGTTTGT+GGG - chr6_3:59315096-59315115 None:intergenic 30.0%
ATGATGTTGATCATGTTTCA+AGG - chr6_3:59315108-59315127 None:intergenic 30.0%
CTGTTTGAAGAAAAATTTGG+TGG - chr6_3:59315164-59315183 None:intergenic 30.0%
GTCTCTACAACTATTTATAG+AGG + chr6_3:59315215-59315234 Msa0955310:five_prime_UTR 30.0%
CATAATTGCTAGGTTTATTG+AGG - chr6_3:59315308-59315327 None:intergenic 30.0%
AGTTGTATGACATAATTGCT+AGG - chr6_3:59315318-59315337 None:intergenic 30.0%
! ACATGGGTAAATAGTCATTT+TGG - chr6_3:59315537-59315556 None:intergenic 30.0%
AAGAATAAGTGATCACACAT+GGG - chr6_3:59315553-59315572 None:intergenic 30.0%
TAAGAATAAGTGATCACACA+TGG - chr6_3:59315554-59315573 None:intergenic 30.0%
TGTGTGATCACTTATTCTTA+AGG + chr6_3:59315554-59315573 Msa0955310:five_prime_UTR 30.0%
! AGTTGAAGAAATCACCATTT+TGG - chr6_3:59315719-59315738 None:intergenic 30.0%
GAAAAAAAGGACACTTACTT+AGG - chr6_3:59315814-59315833 None:intergenic 30.0%
! TCTTTTGGTATAGAATTCTC+TGG - chr6_3:59315930-59315949 None:intergenic 30.0%
!! AATGATGAGTTGATGTTAGA+TGG + chr6_3:59315969-59315988 Msa0955310:CDS 30.0%
! TTCATTTGTTACTACTTGGA+TGG + chr6_3:59316013-59316032 Msa0955310:CDS 30.0%
AGATAGGATCTTTGATATTG+CGG + chr6_3:59316179-59316198 Msa0955310:intron 30.0%
ATTATGCAAAAGCTACATCA+GGG - chr6_3:59316276-59316295 None:intergenic 30.0%
! ATGTAGCTTTTGCATAATCA+GGG + chr6_3:59316278-59316297 Msa0955310:intron 30.0%
!! TTGATCTTTGAAGCTTTGTT+TGG + chr6_3:59316337-59316356 Msa0955310:intron 30.0%
!!! CAAGTTGCTTTTTTGAAGAA+AGG + chr6_3:59316534-59316553 Msa0955310:intron 30.0%
! TTTAGATCTTTTGTGTTTGG+TGG + chr6_3:59316615-59316634 Msa0955310:intron 30.0%
!! TCAGTACTTTCAAGTTTCAA+TGG - chr6_3:59316741-59316760 None:intergenic 30.0%
TTTGTTCAATTATGCAGAAC+CGG + chr6_3:59316779-59316798 Msa0955310:intron 30.0%
!!! GTTTAGCTTTTAAAAGGAAG+TGG + chr6_3:59316905-59316924 Msa0955310:CDS 30.0%
ACTATGTTAGGCTTATCATA+AGG - chr6_3:59316958-59316977 None:intergenic 30.0%
ATGATCACATCATGAGAAAT+AGG + chr6_3:59317059-59317078 Msa0955310:intron 30.0%
! AATAGGTAGAAGTGTATGTT+TGG + chr6_3:59317076-59317095 Msa0955310:intron 30.0%
! GAGTACATCTGAAATGATTT+GGG - chr6_3:59317243-59317262 None:intergenic 30.0%
! TGAGTACATCTGAAATGATT+TGG - chr6_3:59317244-59317263 None:intergenic 30.0%
!! TGAAGAATTTTTGTGCCATT+CGG + chr6_3:59317314-59317333 Msa0955310:intron 30.0%
ACACCTTTGATCAAAATTGT+TGG + chr6_3:59317537-59317556 Msa0955310:intron 30.0%
GGTGAAACAATCAATTTAGT+GGG - chr6_3:59317665-59317684 None:intergenic 30.0%
AGGTGAAACAATCAATTTAG+TGG - chr6_3:59317666-59317685 None:intergenic 30.0%
GAACAAATATTGCACATATG+AGG + chr6_3:59317696-59317715 Msa0955310:intron 30.0%
!!! GAATTTTGATTCTACGATAC+TGG - chr6_3:59317789-59317808 None:intergenic 30.0%
ACAGAATTCATAAGCTATCA+TGG - chr6_3:59317962-59317981 None:intergenic 30.0%
! TAGAGGTATAATGATCTGTT+TGG - chr6_3:59318100-59318119 None:intergenic 30.0%
GTCGTTTAAATATACTACAC+AGG + chr6_3:59318128-59318147 Msa0955310:intron 30.0%
AATATACTACACAGGTTTGT+TGG + chr6_3:59318136-59318155 Msa0955310:intron 30.0%
! ATATACTACACAGGTTTGTT+GGG + chr6_3:59318137-59318156 Msa0955310:intron 30.0%
! ACATTGATACTTTTCACCAA+TGG - chr6_3:59318456-59318475 None:intergenic 30.0%
!! GTGAAAAGTATCAATGTTAG+CGG + chr6_3:59318459-59318478 Msa0955310:CDS 30.0%
ATGTGAAAAACAAGATCATC+CGG - chr6_3:59318549-59318568 None:intergenic 30.0%
GAGAAATTCAATGTGAAAGT+TGG - chr6_3:59318594-59318613 None:intergenic 30.0%
TTCACATTGAATTTCTCCAA+AGG + chr6_3:59318597-59318616 Msa0955310:CDS 30.0%
! AAATGTGATGGAAAATTGCT+TGG + chr6_3:59319029-59319048 Msa0955310:CDS 30.0%
! AAGGTTTAAAATTGTCTCCA+AGG + chr6_3:59319092-59319111 Msa0955310:CDS 30.0%
GCAGACCATTTAAGAAAATA+CGG + chr6_3:59319180-59319199 Msa0955310:CDS 30.0%
CAGACCATTTAAGAAAATAC+GGG + chr6_3:59319181-59319200 Msa0955310:CDS 30.0%
TATGTCAGAAACAAGTCTTT+CGG - chr6_3:59319298-59319317 None:intergenic 30.0%
AGAAAAAGTTGTGAATCTCT+TGG + chr6_3:59319317-59319336 Msa0955310:CDS 30.0%
!! TCTTTGGAATTGATAGAACT+TGG - chr6_3:59319351-59319370 None:intergenic 30.0%
GCATATATTTGATGTGTGTA+AGG + chr6_3:59319558-59319577 Msa0955310:three_prime_UTR 30.0%
!! TTCCATTGTTGCTTTATCTA+TGG + chr6_3:59319585-59319604 Msa0955310:three_prime_UTR 30.0%
CATGTTTCAAGGATTGTTTG+TGG - chr6_3:59315097-59315116 None:intergenic 35.0%
TCATAAACTAATCCACACTG+AGG + chr6_3:59315124-59315143 Msa0955310:five_prime_UTR 35.0%
CAAGCTACATTATGTGTCAT+AGG - chr6_3:59315366-59315385 None:intergenic 35.0%
! GATGAGGTGACAAATGTTTT+AGG - chr6_3:59315393-59315412 None:intergenic 35.0%
GATCACTTATTCTTAAGGAG+TGG + chr6_3:59315559-59315578 Msa0955310:five_prime_UTR 35.0%
ACTGATCTTTGTGAAGATAG+AGG - chr6_3:59315619-59315638 None:intergenic 35.0%
!! GAAGAAATCACCATTTTGGT+TGG - chr6_3:59315715-59315734 None:intergenic 35.0%
! ATCTGATATGCTGCATCTTT+TGG - chr6_3:59315945-59315964 None:intergenic 35.0%
TGATGTTAGATGGAAAACCA+AGG + chr6_3:59315979-59315998 Msa0955310:CDS 35.0%
! TGGCTTCATTTGTTACTACT+TGG + chr6_3:59316009-59316028 Msa0955310:CDS 35.0%
ATGATAAGCTTATCACACTC+AGG - chr6_3:59316041-59316060 None:intergenic 35.0%
TGAGTGTGATAAGCTTATCA+TGG + chr6_3:59316040-59316059 Msa0955310:CDS 35.0%
GATTATGCAAAAGCTACATC+AGG - chr6_3:59316277-59316296 None:intergenic 35.0%
! GATGTAGCTTTTGCATAATC+AGG + chr6_3:59316277-59316296 Msa0955310:intron 35.0%
AGCAGAGAATGATAGTTTCA+GGG - chr6_3:59316514-59316533 None:intergenic 35.0%
! TTGGTGGTTGGATGAAAATT+TGG + chr6_3:59316631-59316650 Msa0955310:intron 35.0%
! GTGCTATTATATTCACACAC+CGG - chr6_3:59316801-59316820 None:intergenic 35.0%
CATCTATTCAATGCTCCTAT+TGG + chr6_3:59316820-59316839 Msa0955310:CDS 35.0%
!!! TGGCTGGTTTAGCTTTTAAA+AGG + chr6_3:59316899-59316918 Msa0955310:CDS 35.0%
CAGACTAAGAGAAAATCAGA+AGG + chr6_3:59316928-59316947 Msa0955310:CDS 35.0%
GATAAGCCTAACATAGTTAC+CGG + chr6_3:59316961-59316980 Msa0955310:CDS 35.0%
! ACAAAAGCATGATACTGTCA+TGG - chr6_3:59317124-59317143 None:intergenic 35.0%
! TACATCTGAAATGATTTGGG+TGG - chr6_3:59317240-59317259 None:intergenic 35.0%
ATTGTCCAGATGTGTAAGTT+AGG + chr6_3:59317286-59317305 Msa0955310:intron 35.0%
TTTGACCTAACTTACACATC+TGG - chr6_3:59317294-59317313 None:intergenic 35.0%
TGGAGTTTCTTAGAAATGTG+AGG + chr6_3:59317358-59317377 Msa0955310:intron 35.0%
GGAGTTTCTTAGAAATGTGA+GGG + chr6_3:59317359-59317378 Msa0955310:intron 35.0%
GAGTTTCTTAGAAATGTGAG+GGG + chr6_3:59317360-59317379 Msa0955310:intron 35.0%
TTGTTATGAAATGCAGTAGC+AGG + chr6_3:59317416-59317435 Msa0955310:intron 35.0%
!! ATTTTGATCAAAGGTGTGTG+TGG - chr6_3:59317534-59317553 None:intergenic 35.0%
!! GCACCAACAATTTTGATCAA+AGG - chr6_3:59317543-59317562 None:intergenic 35.0%
! GCACATACACTTTTGATCAA+AGG - chr6_3:59317605-59317624 None:intergenic 35.0%
! CAAAAGTGTATGTGCTTCAT+AGG + chr6_3:59317610-59317629 Msa0955310:intron 35.0%
!! ACTTTAGGATTCACATATCC+TGG + chr6_3:59317756-59317775 Msa0955310:intron 35.0%
AAACAGTTTCACAAGTGTCT+AGG - chr6_3:59317896-59317915 None:intergenic 35.0%
TAGACACTTGTGAAACTGTT+TGG + chr6_3:59317895-59317914 Msa0955310:intron 35.0%
AGACACTTGTGAAACTGTTT+GGG + chr6_3:59317896-59317915 Msa0955310:intron 35.0%
TTTGTTGGGAAAAATTTGCC+AGG + chr6_3:59318151-59318170 Msa0955310:intron 35.0%
AAAATTTGCCAGGTACTTTG+AGG + chr6_3:59318161-59318180 Msa0955310:intron 35.0%
TCCATTGAAAGCTGTTGAAA+TGG + chr6_3:59318230-59318249 Msa0955310:CDS 35.0%
ACCATTTCAACAGCTTTCAA+TGG - chr6_3:59318234-59318253 None:intergenic 35.0%
! TACTTTTCACCAATGGCAAA+CGG - chr6_3:59318449-59318468 None:intergenic 35.0%
TGCTTTGTATTTACTTCGAC+AGG + chr6_3:59318744-59318763 Msa0955310:intron 35.0%
TACTACCAATTTATACGGCT+TGG + chr6_3:59318789-59318808 Msa0955310:CDS 35.0%
TCAAGCACATACTTGAGATT+CGG - chr6_3:59318845-59318864 None:intergenic 35.0%
TAAGGGCTACAAAAATGTGA+TGG + chr6_3:59319017-59319036 Msa0955310:intron 35.0%
! AACACAAGAATTCTGAAGGA+AGG + chr6_3:59319054-59319073 Msa0955310:CDS 35.0%
AAGGAAGGAATTGAGAAAAC+AGG + chr6_3:59319069-59319088 Msa0955310:CDS 35.0%
AAGGAATTGAGAAAACAGGA+AGG + chr6_3:59319073-59319092 Msa0955310:CDS 35.0%
AAAATTGTCTCCAAGGACAT+AGG + chr6_3:59319099-59319118 Msa0955310:CDS 35.0%
ACCATTTAAGAAAATACGGG+TGG + chr6_3:59319184-59319203 Msa0955310:CDS 35.0%
! TCCACCCGTATTTTCTTAAA+TGG - chr6_3:59319188-59319207 None:intergenic 35.0%
CTCCATAGATAAAGCAACAA+TGG - chr6_3:59319590-59319609 None:intergenic 35.0%
GTTCATAGATGCATAGACAT+TGG - chr6_3:59319621-59319640 None:intergenic 35.0%
GTTTGTGGGTGAAGTAGATT+TGG - chr6_3:59315082-59315101 None:intergenic 40.0%
!!! GATCTTTTTTGTCCTCAGTG+TGG - chr6_3:59315139-59315158 None:intergenic 40.0%
TTGCTCATTCGTCAAGAAGT+GGG + chr6_3:59315275-59315294 Msa0955310:five_prime_UTR 40.0%
AAAACTGTTGTCGATCGATG+AGG - chr6_3:59315409-59315428 None:intergenic 40.0%
CAAAGATCATTGTAACAGCG+AGG + chr6_3:59315497-59315516 Msa0955310:five_prime_UTR 40.0%
CAGAACTCATCCAACCAAAA+TGG + chr6_3:59315702-59315721 Msa0955310:exon 40.0%
! ATGTTCTCGTTTTGTCCATC+TGG - chr6_3:59315751-59315770 None:intergenic 40.0%
TGGAAAACCAAGGCTTAACT+TGG + chr6_3:59315989-59316008 Msa0955310:CDS 40.0%
AATGAAGCCAAGTTAAGCCT+TGG - chr6_3:59315999-59316018 None:intergenic 40.0%
TGGTATCACAGTGAGTTTGT+TGG + chr6_3:59316235-59316254 Msa0955310:intron 40.0%
TAAAGAAAAGGCCTGCATCA+GGG - chr6_3:59316311-59316330 None:intergenic 40.0%
TTAAAGAAAAGGCCTGCATC+AGG - chr6_3:59316312-59316331 None:intergenic 40.0%
GAGCAGAGAATGATAGTTTC+AGG - chr6_3:59316515-59316534 None:intergenic 40.0%
!! GATCTTTTGTGTTTGGTGGT+TGG + chr6_3:59316619-59316638 Msa0955310:intron 40.0%
TTAGCTCCGGTAACTATGTT+AGG - chr6_3:59316970-59316989 None:intergenic 40.0%
GTTAAAGCTCTCAAATCGTG+CGG + chr6_3:59317142-59317161 Msa0955310:intron 40.0%
AATTCCTCCCAATGCATGTT+TGG - chr6_3:59317207-59317226 None:intergenic 40.0%
! ATCTGAAATGATTTGGGTGG+CGG - chr6_3:59317237-59317256 None:intergenic 40.0%
!!! AAGCACTTGTTTTAGGCCTT+CGG + chr6_3:59317463-59317482 Msa0955310:intron 40.0%
GGACACAAAATGGATGATGT+CGG + chr6_3:59317505-59317524 Msa0955310:intron 40.0%
!! CTTTTGATCAAAGGTGTGTG+TGG - chr6_3:59317596-59317615 None:intergenic 40.0%
!! ATGTAGTGGATGAGTGTAGT+AGG - chr6_3:59317636-59317655 None:intergenic 40.0%
TTAGTGGGATGTGTATGTAG+TGG - chr6_3:59317650-59317669 None:intergenic 40.0%
!! GTGAACAAAGCTTTGAGACA+GGG - chr6_3:59317722-59317741 None:intergenic 40.0%
!! AGTGAACAAAGCTTTGAGAC+AGG - chr6_3:59317723-59317742 None:intergenic 40.0%
!! CTCAAAGCTTTGTTCACTCT+CGG + chr6_3:59317725-59317744 Msa0955310:intron 40.0%
!! TCAAAGCTTTGTTCACTCTC+GGG + chr6_3:59317726-59317745 Msa0955310:intron 40.0%
!!! ATTTTGGTGCCTTTTCCCTT+AGG + chr6_3:59317832-59317851 Msa0955310:intron 40.0%
CAAATAAACCAGTCCAAGCA+GGG - chr6_3:59317858-59317877 None:intergenic 40.0%
TCAAATAAACCAGTCCAAGC+AGG - chr6_3:59317859-59317878 None:intergenic 40.0%
AAGCTATCATGGAGAGCTTA+TGG - chr6_3:59317951-59317970 None:intergenic 40.0%
!! GTACTTTGAGGTTGAGCTAA+AGG + chr6_3:59318173-59318192 Msa0955310:intron 40.0%
AAAGGAAGTGAAACTCACAG+AGG + chr6_3:59318191-59318210 Msa0955310:intron 40.0%
CACAGAGGATTACTATGTGA+TGG + chr6_3:59318206-59318225 Msa0955310:CDS 40.0%
!! ATCTGTGTTGCAGCCATTTT+GGG + chr6_3:59318267-59318286 Msa0955310:CDS 40.0%
GCTTCTTACCAAGAAGAACA+AGG + chr6_3:59318335-59318354 Msa0955310:CDS 40.0%
ATGGGATACTCCAATTCATG+TGG + chr6_3:59318365-59318384 Msa0955310:CDS 40.0%
AGAAGATCAGGGTAGAGAAA+CGG - chr6_3:59318417-59318436 None:intergenic 40.0%
TTCTCTACCCTGATCTTCTA+TGG + chr6_3:59318418-59318437 Msa0955310:CDS 40.0%
TCTCTACCCTGATCTTCTAT+GGG + chr6_3:59318419-59318438 Msa0955310:CDS 40.0%
GGAAATCCCATAGAAGATCA+GGG - chr6_3:59318428-59318447 None:intergenic 40.0%
AATGTTAGCGGTCACAAGTA+CGG + chr6_3:59318471-59318490 Msa0955310:CDS 40.0%
!! TTGTTTACCCTGGTATTGGT+TGG + chr6_3:59318496-59318515 Msa0955310:CDS 40.0%
!! TGTTTACCCTGGTATTGGTT+GGG + chr6_3:59318497-59318516 Msa0955310:CDS 40.0%
AAACAACCCAACCAATACCA+GGG - chr6_3:59318506-59318525 None:intergenic 40.0%
!! AAAATACGGGTGGATTGTTC+CGG + chr6_3:59319194-59319213 Msa0955310:CDS 40.0%
TTCCAAAGATGCTCATGTTG+CGG + chr6_3:59319362-59319381 Msa0955310:CDS 40.0%
AGAGTCAAGCTGAGATTCTT+AGG + chr6_3:59319430-59319449 Msa0955310:CDS 40.0%
AAGCTGAGATTCTTAGGTAC+TGG + chr6_3:59319436-59319455 Msa0955310:CDS 40.0%
!! TACTGGAAGAAGCTTGTTGA+TGG + chr6_3:59319453-59319472 Msa0955310:CDS 40.0%
AAACCCTTGATTGTTGTGAG+TGG + chr6_3:59319523-59319542 Msa0955310:three_prime_UTR 40.0%
AAGCCACTCACAACAATCAA+GGG - chr6_3:59319529-59319548 None:intergenic 40.0%
AAAGCCACTCACAACAATCA+AGG - chr6_3:59319530-59319549 None:intergenic 40.0%
CGAATGAGCAACGCTATGTT+GGG - chr6_3:59315266-59315285 None:intergenic 45.0%
ACGAATGAGCAACGCTATGT+TGG - chr6_3:59315267-59315286 None:intergenic 45.0%
GTTGCTCATTCGTCAAGAAG+TGG + chr6_3:59315274-59315293 Msa0955310:five_prime_UTR 45.0%
TCAACTGTCACACATCCAGA+TGG + chr6_3:59315733-59315752 Msa0955310:CDS 45.0%
TTCTAGATACGTGCGTGAAC+AGG + chr6_3:59315786-59315805 Msa0955310:CDS 45.0%
!! CAGTAGGTGTTGGAACTGTA+GGG + chr6_3:59316857-59316876 Msa0955310:CDS 45.0%
GTCATCAGAGGCAATAATGC+TGG + chr6_3:59316879-59316898 Msa0955310:CDS 45.0%
ATCAACCTGCACATTAGCTC+CGG - chr6_3:59316983-59317002 None:intergenic 45.0%
!! GCCAGACAAGCACTTGTTTT+AGG + chr6_3:59317456-59317475 Msa0955310:intron 45.0%
GCCTAAAACAAGTGCTTGTC+TGG - chr6_3:59317460-59317479 None:intergenic 45.0%
CATGGACACTGGACACAAAA+TGG + chr6_3:59317495-59317514 Msa0955310:intron 45.0%
TTGATTCTACGATACTGGGC+TGG - chr6_3:59317784-59317803 None:intergenic 45.0%
! TAGCTCAACCTCAAAGTACC+TGG - chr6_3:59318172-59318191 None:intergenic 45.0%
CAAAATGGCTGCAACACAGA+TGG - chr6_3:59318268-59318287 None:intergenic 45.0%
! CATCTGTGTTGCAGCCATTT+TGG + chr6_3:59318266-59318285 Msa0955310:CDS 45.0%
! AGTCAGCGTTGAACCCAAAA+TGG - chr6_3:59318283-59318302 None:intergenic 45.0%
!!! ATTTTGGGTTCAACGCTGAC+TGG + chr6_3:59318282-59318301 Msa0955310:CDS 45.0%
ACCAAGAAGAACAAGGAGAC+AGG + chr6_3:59318342-59318361 Msa0955310:CDS 45.0%
TCCTGTCTCCTTGTTCTTCT+TGG - chr6_3:59318346-59318365 None:intergenic 45.0%
AGAAGAACAAGGAGACAGGA+TGG + chr6_3:59318346-59318365 Msa0955310:CDS 45.0%
GAAGAACAAGGAGACAGGAT+GGG + chr6_3:59318347-59318366 Msa0955310:CDS 45.0%
CGGAAATCCCATAGAAGATC+AGG - chr6_3:59318429-59318448 None:intergenic 45.0%
ATGGGATTTCCGTTTGCCAT+TGG + chr6_3:59318437-59318456 Msa0955310:CDS 45.0%
!! AAGTACGGTCTTGTTTACCC+TGG + chr6_3:59318486-59318505 Msa0955310:CDS 45.0%
!! GGTCTTGTTTACCCTGGTAT+TGG + chr6_3:59318492-59318511 Msa0955310:CDS 45.0%
CAAACAACCCAACCAATACC+AGG - chr6_3:59318507-59318526 None:intergenic 45.0%
!! CTGGTATTGGTTGGGTTGTT+TGG + chr6_3:59318505-59318524 Msa0955310:CDS 45.0%
!! GTATTGGTTGGGTTGTTTGG+AGG + chr6_3:59318508-59318527 Msa0955310:CDS 45.0%
CGAAGCCAAGCCGTATAAAT+TGG - chr6_3:59318797-59318816 None:intergenic 45.0%
! ATTTATACGGCTTGGCTTCG+AGG + chr6_3:59318797-59318816 Msa0955310:CDS 45.0%
GGCGAACACAAGAATTCTGA+AGG + chr6_3:59319050-59319069 Msa0955310:CDS 45.0%
TTCAGAGAGAAGGCTACAAG+TGG - chr6_3:59319129-59319148 None:intergenic 45.0%
AATCCTCCCTAATCACCACT+CGG - chr6_3:59319260-59319279 None:intergenic 45.0%
AACCGCAACATGAGCATCTT+TGG - chr6_3:59319367-59319386 None:intergenic 45.0%
!! CTTGTTGATGGCAAGAGAGT+TGG + chr6_3:59319465-59319484 Msa0955310:CDS 45.0%
GTAACAGCGAGGTGTAGAGT+CGG + chr6_3:59315508-59315527 Msa0955310:five_prime_UTR 50.0%
TCCTGTCACTACTGAGCTTC+AGG + chr6_3:59316100-59316119 Msa0955310:intron 50.0%
ACCTGAAGCTCAGTAGTGAC+AGG - chr6_3:59316104-59316123 None:intergenic 50.0%
TTGTGGTTGCGATCGCAGAT+AGG + chr6_3:59316163-59316182 Msa0955310:intron 50.0%
CAATGCTCCTATTGGTGCAG+AGG + chr6_3:59316828-59316847 Msa0955310:CDS 50.0%
GCAGTTTCCTCTGCACCAAT+AGG - chr6_3:59316838-59316857 None:intergenic 50.0%
GAGGAAACTGCAGTAGGTGT+TGG + chr6_3:59316847-59316866 Msa0955310:CDS 50.0%
!! GCAGTAGGTGTTGGAACTGT+AGG + chr6_3:59316856-59316875 Msa0955310:CDS 50.0%
TGGAACTGTAGGGTCATCAG+AGG + chr6_3:59316867-59316886 Msa0955310:CDS 50.0%
TCAGAGGCAATAATGCTGGC+TGG + chr6_3:59316883-59316902 Msa0955310:CDS 50.0%
AGTTACCGGAGCTAATGTGC+AGG + chr6_3:59316975-59316994 Msa0955310:CDS 50.0%
!! CCAATGCATGTTTGGCTTGG+CGG - chr6_3:59317199-59317218 None:intergenic 50.0%
CGCCAAGCCAAACATGCATT+GGG + chr6_3:59317197-59317216 Msa0955310:intron 50.0%
CTCCCAATGCATGTTTGGCT+TGG - chr6_3:59317202-59317221 None:intergenic 50.0%
CAAGCCAAACATGCATTGGG+AGG + chr6_3:59317200-59317219 Msa0955310:intron 50.0%
! TGAAATGATTTGGGTGGCGG+TGG - chr6_3:59317234-59317253 None:intergenic 50.0%
TCTCGAAGCACACATCCGAA+TGG - chr6_3:59317332-59317351 None:intergenic 50.0%
TGTGTGCTTCGAGAGTCATG+TGG + chr6_3:59317338-59317357 Msa0955310:intron 50.0%
!! TCTGGCCTTACCTTTGGTTC+GGG - chr6_3:59317442-59317461 None:intergenic 50.0%
!! GTCTGGCCTTACCTTTGGTT+CGG - chr6_3:59317443-59317462 None:intergenic 50.0%
!! TGCTTGTCTGGCCTTACCTT+TGG - chr6_3:59317448-59317467 None:intergenic 50.0%
GTCCATGCTTCATAAGCCGA+AGG - chr6_3:59317482-59317501 None:intergenic 50.0%
GGCTTATGAAGCATGGACAC+TGG + chr6_3:59317484-59317503 Msa0955310:intron 50.0%
CTCTCGGGTCAGCTAACTTT+AGG + chr6_3:59317741-59317760 Msa0955310:intron 50.0%
! AACGCTGACTGGAGAGTTTG+AGG + chr6_3:59318293-59318312 Msa0955310:CDS 50.0%
CTCGCAGCATCCACATGAAT+TGG - chr6_3:59318378-59318397 None:intergenic 50.0%
ATTCATGTGGATGCTGCGAG+CGG + chr6_3:59318378-59318397 Msa0955310:CDS 50.0%
!! GAGGCATAAAGCTGACTTGC+CGG + chr6_3:59318527-59318546 Msa0955310:CDS 50.0%
AAGTGGCACACCTATGTCCT+TGG - chr6_3:59319112-59319131 None:intergenic 50.0%
GCTGCTGTCTTTCAGAGAGA+AGG - chr6_3:59319139-59319158 None:intergenic 50.0%
GGAGGATTTCAGCTGTAGCT+TGG + chr6_3:59319272-59319291 Msa0955310:CDS 50.0%
TATCGCGAGTGAGACAAGTG+AGG + chr6_3:59319386-59319405 Msa0955310:CDS 50.0%
CAAGAGAGTTGGAGCATGCT+AGG + chr6_3:59319476-59319495 Msa0955310:CDS 50.0%
AGAAAAGGCCTGCATCAGGG+TGG - chr6_3:59316308-59316327 None:intergenic 55.0%
GGTGCAGAGGAAACTGCAGT+AGG + chr6_3:59316841-59316860 Msa0955310:CDS 55.0%
!! ATGTTTGGCTTGGCGGTGAC+TGG - chr6_3:59317192-59317211 None:intergenic 55.0%
CCGCCAAGCCAAACATGCAT+TGG + chr6_3:59317196-59317215 Msa0955310:intron 55.0%
GGCCTTCGGCTTATGAAGCA+TGG + chr6_3:59317477-59317496 Msa0955310:intron 55.0%
CAAGCAGGGCCTAAGGGAAA+AGG - chr6_3:59317844-59317863 None:intergenic 55.0%
! CTTTTCCCTTAGGCCCTGCT+TGG + chr6_3:59317842-59317861 Msa0955310:intron 55.0%
CCTAATCACCACTCGGAGGA+CGG - chr6_3:59319253-59319272 None:intergenic 55.0%
CGTCCTCCGAGTGGTGATTA+GGG + chr6_3:59319251-59319270 Msa0955310:CDS 55.0%
CAGTAGCAGGCCCGAACCAA+AGG + chr6_3:59317429-59317448 Msa0955310:intron 60.0%
GCAGGCCCGAACCAAAGGTA+AGG + chr6_3:59317434-59317453 Msa0955310:intron 60.0%
!! TACGATACTGGGCTGGCTCC+AGG - chr6_3:59317777-59317796 None:intergenic 60.0%
CCAGTCCAAGCAGGGCCTAA+GGG - chr6_3:59317850-59317869 None:intergenic 60.0%
ACCAGTCCAAGCAGGGCCTA+AGG - chr6_3:59317851-59317870 None:intergenic 60.0%
TCCGGCCTACACAATGCCAG+CGG + chr6_3:59319212-59319231 Msa0955310:CDS 60.0%
TCCGCTGGCATTGTGTAGGC+CGG - chr6_3:59319216-59319235 None:intergenic 60.0%
TGCGTCCGCTGGCATTGTGT+AGG - chr6_3:59319220-59319239 None:intergenic 60.0%
! GCGATGTGTTTTGCGTCCGC+TGG - chr6_3:59319231-59319250 None:intergenic 60.0%
CCGTCCTCCGAGTGGTGATT+AGG + chr6_3:59319250-59319269 Msa0955310:CDS 60.0%
CCTCCCTAATCACCACTCGG+AGG - chr6_3:59319257-59319276 None:intergenic 60.0%
CCTCCGAGTGGTGATTAGGG+AGG + chr6_3:59319254-59319273 Msa0955310:CDS 60.0%
AGGGTGAGCCACCCTGATGC+AGG + chr6_3:59316297-59316316 Msa0955310:intron 65.0%
CCCTTAGGCCCTGCTTGGAC+TGG + chr6_3:59317847-59317866 Msa0955310:intron 65.0%
CATGTGGATGCTGCGAGCGG+TGG + chr6_3:59318381-59318400 Msa0955310:CDS 65.0%
ACACATCGCCGTCCTCCGAG+TGG + chr6_3:59319242-59319261 Msa0955310:CDS 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 59315048 59319720 59315048 ID=Msa0955310;Name=Msa0955310
chr6_3 mRNA 59315048 59319720 59315048 ID=Msa0955310-mRNA-1;Parent=Msa0955310;Name=Msa0955310-mRNA-1;_AED=0.25;_eAED=0.25;_QI=653|0.66|0.71|1|0.83|0.71|7|223|471
chr6_3 exon 59315048 59315662 59315048 ID=Msa0955310-mRNA-1:exon:11717;Parent=Msa0955310-mRNA-1
chr6_3 exon 59315683 59315815 59315683 ID=Msa0955310-mRNA-1:exon:11718;Parent=Msa0955310-mRNA-1
chr6_3 exon 59315917 59316082 59315917 ID=Msa0955310-mRNA-1:exon:11719;Parent=Msa0955310-mRNA-1
chr6_3 exon 59316796 59316996 59316796 ID=Msa0955310-mRNA-1:exon:11720;Parent=Msa0955310-mRNA-1
chr6_3 exon 59318195 59318618 59318195 ID=Msa0955310-mRNA-1:exon:11721;Parent=Msa0955310-mRNA-1
chr6_3 exon 59318766 59318818 59318766 ID=Msa0955310-mRNA-1:exon:11722;Parent=Msa0955310-mRNA-1
chr6_3 exon 59319021 59319720 59319021 ID=Msa0955310-mRNA-1:exon:11723;Parent=Msa0955310-mRNA-1
chr6_3 five_prime_UTR 59315048 59315662 59315048 ID=Msa0955310-mRNA-1:five_prime_utr;Parent=Msa0955310-mRNA-1
chr6_3 five_prime_UTR 59315683 59315720 59315683 ID=Msa0955310-mRNA-1:five_prime_utr;Parent=Msa0955310-mRNA-1
chr6_3 CDS 59315721 59315815 59315721 ID=Msa0955310-mRNA-1:cds;Parent=Msa0955310-mRNA-1
chr6_3 CDS 59315917 59316082 59315917 ID=Msa0955310-mRNA-1:cds;Parent=Msa0955310-mRNA-1
chr6_3 CDS 59316796 59316996 59316796 ID=Msa0955310-mRNA-1:cds;Parent=Msa0955310-mRNA-1
chr6_3 CDS 59318195 59318618 59318195 ID=Msa0955310-mRNA-1:cds;Parent=Msa0955310-mRNA-1
chr6_3 CDS 59318766 59318818 59318766 ID=Msa0955310-mRNA-1:cds;Parent=Msa0955310-mRNA-1
chr6_3 CDS 59319021 59319497 59319021 ID=Msa0955310-mRNA-1:cds;Parent=Msa0955310-mRNA-1
chr6_3 three_prime_UTR 59319498 59319720 59319498 ID=Msa0955310-mRNA-1:three_prime_utr;Parent=Msa0955310-mRNA-1
Gene Sequence

>Msa0955310

ATGGTGATTTCTTCAACTGTCACACATCCAGATGGACAAAACGAGAACATAGCATGCACTTTCGCTTCTAGATACGTGCGTGAACAGGTTCCTAAGTTCAAGATGCCAGAGAATTCTATACCAAAAGATGCAGCATATCAGATAATAAATGATGAGTTGATGTTAGATGGAAAACCAAGGCTTAACTTGGCTTCATTTGTTACTACTTGGATGGAACCTGAGTGTGATAAGCTTATCATGGATTCACTTAACAAGAATTATAACCGGTGTGTGAATATAATAGCACATCTATTCAATGCTCCTATTGGTGCAGAGGAAACTGCAGTAGGTGTTGGAACTGTAGGGTCATCAGAGGCAATAATGCTGGCTGGTTTAGCTTTTAAAAGGAAGTGGCAGACTAAGAGAAAATCAGAAGGCAAACCTTATGATAAGCCTAACATAGTTACCGGAGCTAATGTGCAGGAAGTGAAACTCACAGAGGATTACTATGTGATGGATCCATTGAAAGCTGTTGAAATGGTAGATGAGAACACCATCTGTGTTGCAGCCATTTTGGGTTCAACGCTGACTGGAGAGTTTGAGGATGTGAAGCTTCTCAACGAGCTTCTTACCAAGAAGAACAAGGAGACAGGATGGGATACTCCAATTCATGTGGATGCTGCGAGCGGTGGATTTGTTGCTCCGTTTCTCTACCCTGATCTTCTATGGGATTTCCGTTTGCCATTGGTGAAAAGTATCAATGTTAGCGGTCACAAGTACGGTCTTGTTTACCCTGGTATTGGTTGGGTTGTTTGGAGGCATAAAGCTGACTTGCCGGATGATCTTGTTTTTCACATCAATTATCTTGGATCTGATCAACCAACTTTCACATTGAATTTCTCCAAAGGATCGAGTCAAATCATTGCTCAATACTACCAATTTATACGGCTTGGCTTCGAGGGCTACAAAAATGTGATGGAAAATTGCTTGGCGAACACAAGAATTCTGAAGGAAGGAATTGAGAAAACAGGAAGGTTTAAAATTGTCTCCAAGGACATAGGTGTGCCACTTGTAGCCTTCTCTCTGAAAGACAGCAGCAAACACACAGTGTTCGAGATAGCAGACCATTTAAGAAAATACGGGTGGATTGTTCCGGCCTACACAATGCCAGCGGACGCAAAACACATCGCCGTCCTCCGAGTGGTGATTAGGGAGGATTTCAGCTGTAGCTTGGCCGAAAGACTTGTTTCTGACATAGAAAAAGTTGTGAATCTCTTGGACACACTTCCAAGTTCTATCAATTCCAAAGATGCTCATGTTGCGGTTATCGCGAGTGAGACAAGTGAGGAAGTTAAGAAAGATATTACTGAGAGTCAAGCTGAGATTCTTAGGTACTGGAAGAAGCTTGTTGATGGCAAGAGAGTTGGAGCATGCTAG

Protein sequence

>Msa0955310

MVISSTVTHPDGQNENIACTFASRYVREQVPKFKMPENSIPKDAAYQIINDELMLDGKPRLNLASFVTTWMEPECDKLIMDSLNKNYNRCVNIIAHLFNAPIGAEETAVGVGTVGSSEAIMLAGLAFKRKWQTKRKSEGKPYDKPNIVTGANVQEVKLTEDYYVMDPLKAVEMVDENTICVAAILGSTLTGEFEDVKLLNELLTKKNKETGWDTPIHVDAASGGFVAPFLYPDLLWDFRLPLVKSINVSGHKYGLVYPGIGWVVWRHKADLPDDLVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNVMENCLANTRILKEGIEKTGRFKIVSKDIGVPLVAFSLKDSSKHTVFEIADHLRKYGWIVPAYTMPADAKHIAVLRVVIREDFSCSLAERLVSDIEKVVNLLDTLPSSINSKDAHVAVIASETSEEVKKDITESQAEILRYWKKLVDGKRVGAC*