Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027320 | XP_024635315.1 | 99.525 | 421 | 2 | 0 | 1 | 421 | 1 | 421 | 0.0 | 848 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027320 | sp|Q6K9N6|SUCB_ORYSJ | 86.158 | 419 | 58 | 0 | 1 | 419 | 1 | 419 | 0.0 | 749 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027320 | A0A072VL01 | 99.525 | 421 | 2 | 0 | 1 | 421 | 1 | 421 | 0.0 | 848 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007990 | Msa0027320 | 0.815296 | 9.942978e-52 | -8.615850e-47 |
| Msa0022550 | Msa0027320 | 0.800811 | 1.209387e-48 | -8.615850e-47 |
| Msa0027320 | Msa0035120 | 0.803840 | 2.876218e-49 | -8.615850e-47 |
| Msa0027320 | Msa0039250 | 0.810185 | 1.307150e-50 | -8.615850e-47 |
| Msa0027320 | Msa0043500 | 0.826043 | 3.369189e-54 | -8.615850e-47 |
| Msa0027320 | Msa0043650 | 0.816930 | 4.288877e-52 | -8.615850e-47 |
| Msa0027320 | Msa0046760 | 0.803253 | 3.808127e-49 | -8.615850e-47 |
| Msa0027320 | Msa0051630 | 0.800201 | 1.610540e-48 | -8.615850e-47 |
| Msa0027320 | Msa0052870 | 0.808022 | 3.798661e-50 | -8.615850e-47 |
| Msa0027320 | Msa0054820 | 0.825341 | 4.941879e-54 | -8.615850e-47 |
| Msa0027320 | Msa0056450 | 0.838555 | 2.682162e-57 | -8.615850e-47 |
| Msa0027320 | Msa0077540 | 0.806050 | 9.929382e-50 | -8.615850e-47 |
| Msa0027320 | Msa0100160 | 0.806010 | 1.012514e-49 | -8.615850e-47 |
| Msa0027320 | Msa0118000 | 0.803724 | 3.041000e-49 | -8.615850e-47 |
| Msa0027320 | Msa0133720 | 0.814341 | 1.618581e-51 | -8.615850e-47 |
| Msa0027320 | Msa0133820 | 0.817996 | 2.467703e-52 | -8.615850e-47 |
| Msa0027320 | Msa0141400 | 0.811943 | 5.436571e-51 | -8.615850e-47 |
| Msa0027320 | Msa0144360 | 0.818137 | 2.293222e-52 | -8.615850e-47 |
| Msa0027320 | Msa0149300 | 0.815230 | 1.028188e-51 | -8.615850e-47 |
| Msa0027320 | Msa0165300 | 0.805898 | 1.068985e-49 | -8.615850e-47 |
| Msa0027320 | Msa0181230 | 0.819613 | 1.059516e-52 | -8.615850e-47 |
| Msa0027320 | Msa0187030 | 0.819399 | 1.185474e-52 | -8.615850e-47 |
| Msa0027320 | Msa0197780 | 0.805855 | 1.091015e-49 | -8.615850e-47 |
| Msa0027320 | Msa0230370 | 0.801091 | 1.060330e-48 | -8.615850e-47 |
| Msa0027320 | Msa0245940 | 0.803195 | 3.914742e-49 | -8.615850e-47 |
| Msa0027320 | Msa0304100 | 0.805392 | 1.364526e-49 | -8.615850e-47 |
| Msa0027320 | Msa0307570 | 0.807692 | 4.463908e-50 | -8.615850e-47 |
| Msa0027320 | Msa0317740 | 0.803290 | 3.740147e-49 | -8.615850e-47 |
| Msa0027320 | Msa0329320 | 0.800343 | 1.506631e-48 | -8.615850e-47 |
| Msa0027320 | Msa0342010 | 0.808439 | 3.095371e-50 | -8.615850e-47 |
| Msa0027320 | Msa0346990 | 0.817164 | 3.801334e-52 | -8.615850e-47 |
| Msa0027320 | Msa0363400 | 0.806949 | 6.415396e-50 | -8.615850e-47 |
| Msa0027320 | Msa0363810 | 0.802790 | 4.745399e-49 | -8.615850e-47 |
| Msa0027320 | Msa0372420 | 0.800551 | 1.366694e-48 | -8.615850e-47 |
| Msa0027320 | Msa0389910 | 0.829471 | 5.054007e-55 | -8.615850e-47 |
| Msa0027320 | Msa0392200 | 0.818692 | 1.716338e-52 | -8.615850e-47 |
| Msa0027320 | Msa0411410 | 0.801255 | 9.814542e-49 | -8.615850e-47 |
| Msa0027320 | Msa0432170 | 0.821957 | 3.062911e-53 | -8.615850e-47 |
| Msa0027320 | Msa0455740 | 0.806897 | 6.580014e-50 | -8.615850e-47 |
| Msa0027320 | Msa0473980 | 0.800108 | 1.682391e-48 | -8.615850e-47 |
| Msa0027320 | Msa0480780 | 0.811399 | 7.139353e-51 | -8.615850e-47 |
| Msa0027320 | Msa0483740 | 0.804831 | 1.788426e-49 | -8.615850e-47 |
| Msa0027320 | Msa0510290 | 0.830443 | 2.928313e-55 | -8.615850e-47 |
| Msa0027320 | Msa0516120 | 0.803659 | 3.136713e-49 | -8.615850e-47 |
| Msa0027320 | Msa0521020 | 0.806246 | 9.027352e-50 | -8.615850e-47 |
| Msa0027320 | Msa0521670 | 0.801656 | 8.124702e-49 | -8.615850e-47 |
| Msa0027320 | Msa0541580 | 0.800183 | 1.623897e-48 | -8.615850e-47 |
| Msa0027320 | Msa0548150 | 0.806167 | 9.379497e-50 | -8.615850e-47 |
| Msa0027320 | Msa0576680 | 0.812968 | 3.245666e-51 | -8.615850e-47 |
| Msa0027320 | Msa0581530 | 0.815444 | 9.215152e-52 | -8.615850e-47 |
| Msa0027320 | Msa0581690 | 0.814185 | 1.752482e-51 | -8.615850e-47 |
| Msa0027320 | Msa0636020 | 0.800852 | 1.186478e-48 | -8.615850e-47 |
| Msa0027320 | Msa0652450 | 0.812246 | 4.668127e-51 | -8.615850e-47 |
| Msa0027320 | Msa0652690 | 0.808900 | 2.467328e-50 | -8.615850e-47 |
| Msa0027320 | Msa0661320 | 0.831090 | 2.032229e-55 | -8.615850e-47 |
| Msa0027320 | Msa0686180 | 0.809006 | 2.341994e-50 | -8.615850e-47 |
| Msa0027320 | Msa0689760 | 0.849302 | 3.527911e-60 | -8.615850e-47 |
| Msa0027320 | Msa0704600 | 0.804691 | 1.913014e-49 | -8.615850e-47 |
| Msa0027320 | Msa0710270 | 0.814738 | 1.322386e-51 | -8.615850e-47 |
| Msa0027320 | Msa0716860 | 0.848795 | 4.881864e-60 | -8.615850e-47 |
| Msa0027320 | Msa0737570 | 0.811308 | 7.470399e-51 | -8.615850e-47 |
| Msa0027320 | Msa0751260 | 0.801764 | 7.720751e-49 | -8.615850e-47 |
| Msa0027320 | Msa0757800 | 0.839533 | 1.497361e-57 | -8.615850e-47 |
| Msa0027320 | Msa0795070 | 0.815098 | 1.100225e-51 | -8.615850e-47 |
| Msa0027320 | Msa0800700 | 0.808743 | 2.666201e-50 | -8.615850e-47 |
| Msa0027320 | Msa0818630 | 0.800090 | 1.696832e-48 | -8.615850e-47 |
| Msa0027320 | Msa0828660 | 0.804342 | 2.261879e-49 | -8.615850e-47 |
| Msa0027320 | Msa0846140 | 0.801435 | 9.015523e-49 | -8.615850e-47 |
| Msa0027320 | Msa0856920 | 0.810885 | 9.227126e-51 | -8.615850e-47 |
| Msa0027320 | Msa0868160 | 0.831302 | 1.802909e-55 | -8.615850e-47 |
| Msa0027320 | Msa0868440 | 0.812098 | 5.029935e-51 | -8.615850e-47 |
| Msa0027320 | Msa0873860 | 0.826944 | 2.053848e-54 | -8.615850e-47 |
| Msa0027320 | Msa0879080 | 0.817690 | 2.892738e-52 | -8.615850e-47 |
| Msa0027320 | Msa0888940 | 0.803835 | 2.884374e-49 | -8.615850e-47 |
| Msa0027320 | Msa0900620 | 0.808997 | 2.352194e-50 | -8.615850e-47 |
| Msa0027320 | Msa0906690 | 0.803929 | 2.756930e-49 | -8.615850e-47 |
| Msa0027320 | Msa0926470 | 0.808188 | 3.500652e-50 | -8.615850e-47 |
| Msa0027320 | Msa0932350 | 0.810493 | 1.121396e-50 | -8.615850e-47 |
| Msa0027320 | Msa0944660 | 0.841564 | 4.401832e-58 | -8.615850e-47 |
| Msa0027320 | Msa0945240 | 0.811013 | 8.656206e-51 | -8.615850e-47 |
| Msa0027320 | Msa0975940 | 0.817375 | 3.407140e-52 | -8.615850e-47 |
| Msa0027320 | Msa1010070 | 0.835169 | 1.962166e-56 | -8.615850e-47 |
| Msa0027320 | Msa1022820 | 0.814204 | 1.735255e-51 | -8.615850e-47 |
| Msa0027320 | Msa1036410 | 0.827459 | 1.546034e-54 | -8.615850e-47 |
| Msa0027320 | Msa1036440 | 0.805623 | 1.220792e-49 | -8.615850e-47 |
| Msa0027320 | Msa1038080 | 0.849544 | 3.020829e-60 | -8.615850e-47 |
| Msa0027320 | Msa1082290 | 0.809079 | 2.259147e-50 | -8.615850e-47 |
| Msa0027320 | Msa1129690 | 0.851734 | 7.315100e-61 | -8.615850e-47 |
| Msa0027320 | Msa1176270 | 0.800001 | 1.768826e-48 | -8.615850e-47 |
| Msa0027320 | Msa1199570 | 0.801400 | 9.166741e-49 | -8.615850e-47 |
| Msa0027320 | Msa1201640 | 0.801528 | 8.627634e-49 | -8.615850e-47 |
| Msa0027320 | Msa1267020 | 0.801392 | 9.199470e-49 | -8.615850e-47 |
| Msa0027320 | Msa1282500 | 0.822104 | 2.831317e-53 | -8.615850e-47 |
| Msa0027320 | Msa1286550 | 0.809515 | 1.821777e-50 | -8.615850e-47 |
| Msa0027320 | Msa1328640 | 0.806180 | 9.324340e-50 | -8.615850e-47 |
| Msa0027320 | Msa1332000 | 0.806100 | 9.689941e-50 | -8.615850e-47 |
| Msa0027320 | Msa1346750 | 0.801687 | 8.004754e-49 | -8.615850e-47 |
| Msa0027320 | Msa1349520 | 0.803777 | 2.965401e-49 | -8.615850e-47 |
| Msa0027320 | Msa1365600 | 0.814791 | 1.287113e-51 | -8.615850e-47 |
| Msa0027320 | Msa1365760 | 0.812933 | 3.303943e-51 | -8.615850e-47 |
| Msa0027320 | Msa1393820 | 0.800366 | 1.490702e-48 | -8.615850e-47 |
| Msa0027320 | Msa1408010 | 0.813866 | 2.060759e-51 | -8.615850e-47 |
| Msa0027320 | Msa1420250 | 0.845442 | 4.051114e-59 | -8.615850e-47 |
| Msa0027320 | Msa1422910 | 0.805207 | 1.491989e-49 | -8.615850e-47 |
| Msa0027320 | Msa1446780 | 0.853919 | 1.737420e-61 | -8.615850e-47 |
| Msa0027320 | Msa1464290 | 0.803178 | 3.945403e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027320 | MtrunA17_Chr1g0183491 | 99.525 | 421 | 2 | 0 | 1 | 421 | 1 | 421 | 0.0 | 848 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027320 | AT2G20420.1 | 85.885 | 418 | 59 | 0 | 2 | 419 | 1 | 418 | 0.0 | 747 |
Find 106 sgRNAs with CRISPR-Local
Find 343 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGGAAAGTGTTTACTTAT+TGG | 0.141400 | 1_1:-51646002 | None:intergenic |
| TTCAAATTTGAATGTTTAAT+TGG | 0.150084 | 1_1:+51646210 | Msa0027320:three_prime_UTR |
| GAAGTTTGAATATCTCTTTC+TGG | 0.175075 | 1_1:-51643780 | None:intergenic |
| GACCATTGTTGTTAGGGTTT+TGG | 0.196821 | 1_1:-51641168 | None:intergenic |
| GCTTATTATTGCTTGTAAAA+AGG | 0.207735 | 1_1:+51643304 | Msa0027320:intron |
| AAGGCAGATTTAAATTATAT+TGG | 0.212296 | 1_1:+51644726 | Msa0027320:CDS |
| TATAGGTCTTTCTTCAACTA+TGG | 0.221689 | 1_1:-51641104 | None:intergenic |
| TGAGGATCTTCAATTTATTT+TGG | 0.228148 | 1_1:+51646179 | Msa0027320:three_prime_UTR |
| TGACAAAGTGAAGGCTATTT+TGG | 0.228396 | 1_1:+51645122 | Msa0027320:CDS |
| ATTGGGTTAGATGGAGAAAT+TGG | 0.248780 | 1_1:+51644744 | Msa0027320:CDS |
| TTAAATTATATTGGGTTAGA+TGG | 0.259385 | 1_1:+51644735 | Msa0027320:CDS |
| ATTTCCAGATATGATTATTA+AGG | 0.260056 | 1_1:+51643358 | Msa0027320:CDS |
| TGATTCTGACTGCACTCTTT+TGG | 0.271327 | 1_1:+51643582 | Msa0027320:CDS |
| TTCCACATTATTGTTCAATT+AGG | 0.296568 | 1_1:+51646018 | Msa0027320:three_prime_UTR |
| TGATTTCTATCAGCCACTTT+AGG | 0.310229 | 1_1:-51643520 | None:intergenic |
| ATTAATAACGGCTGAAGATT+TGG | 0.314200 | 1_1:+51645809 | Msa0027320:CDS |
| GCTGAATTGATGAGCAAATA+TGG | 0.315960 | 1_1:+51641421 | Msa0027320:CDS |
| AGGCAGATTTAAATTATATT+GGG | 0.326373 | 1_1:+51644727 | Msa0027320:CDS |
| ATCCTCTGACCATTGTTGTT+AGG | 0.334086 | 1_1:-51641175 | None:intergenic |
| TCTTTCTTACATTTCAAGAT+AGG | 0.335092 | 1_1:+51646064 | Msa0027320:three_prime_UTR |
| ACCACCGACATCCAGAAAAT+TGG | 0.337667 | 1_1:-51644838 | None:intergenic |
| CCTTCAAGACGAACTATTAC+TGG | 0.352447 | 1_1:-51645624 | None:intergenic |
| ATCTTACATTTGGTTCCATT+TGG | 0.353516 | 1_1:+51646253 | Msa0027320:three_prime_UTR |
| AAATTGCGTTGTAACTAAAC+TGG | 0.366199 | 1_1:-51645896 | None:intergenic |
| TTAGCCGGTGGACGAGGATT+GGG | 0.369874 | 1_1:+51641908 | Msa0027320:CDS |
| ACCGGGGAATGCATCTTTGA+TGG | 0.376142 | 1_1:-51641497 | None:intergenic |
| TGCAAAGGTTGTTGATGGTT+TGG | 0.380876 | 1_1:+51643495 | Msa0027320:CDS |
| TGAGGAAACCGCTACGCCTC+TGG | 0.390330 | 1_1:-51641455 | None:intergenic |
| TCTCAACATCCACGAGTATC+AGG | 0.395102 | 1_1:+51641265 | Msa0027320:CDS |
| TCCTCTGACCATTGTTGTTA+GGG | 0.398230 | 1_1:-51641174 | None:intergenic |
| TACAAAACAGTCAGGTCCTC+AGG | 0.399292 | 1_1:+51642258 | Msa0027320:CDS |
| TTCTGCAAGGTCTTCAATGC+TGG | 0.400023 | 1_1:-51643333 | None:intergenic |
| CAAACCTTAATAATCATATC+TGG | 0.400091 | 1_1:-51643362 | None:intergenic |
| TTTAGCCGGTGGACGAGGAT+TGG | 0.412502 | 1_1:+51641907 | Msa0027320:CDS |
| AATACAGTCTGTTGAACATA+TGG | 0.417523 | 1_1:+51646124 | Msa0027320:three_prime_UTR |
| CTCTCTCCGTCGCCGGCACA+TGG | 0.417809 | 1_1:+51641222 | Msa0027320:CDS |
| GAACTTGATTCGATCGATAT+AGG | 0.423710 | 1_1:-51641121 | None:intergenic |
| CCAGTAATAGTTCGTCTTGA+AGG | 0.437190 | 1_1:+51645624 | Msa0027320:CDS |
| AACAAAATAAACTTAAACCT+TGG | 0.446297 | 1_1:-51646289 | None:intergenic |
| AATGTACTTTGCTATAACTC+TGG | 0.458552 | 1_1:+51643092 | Msa0027320:CDS |
| TGAACATATGGTTCACCGAT+TGG | 0.464525 | 1_1:+51646136 | Msa0027320:three_prime_UTR |
| GATGCTGCAAAGGTTGTTGA+TGG | 0.481004 | 1_1:+51643490 | Msa0027320:CDS |
| GGCTGCATGGTGAATGGAGC+AGG | 0.482177 | 1_1:+51644765 | Msa0027320:CDS |
| GGATCGTAAGACTGCTGGTC+CGG | 0.485726 | 1_1:+51643113 | Msa0027320:CDS |
| TAGCATCAGCAGCTACTAGT+TGG | 0.488406 | 1_1:-51643726 | None:intergenic |
| TTATCAGCTGTCTCCGCCAT+GGG | 0.493856 | 1_1:-51643703 | None:intergenic |
| TCGTCAATAATTTGTAACTC+AGG | 0.496657 | 1_1:-51645921 | None:intergenic |
| GTTATCAGCTGTCTCCGCCA+TGG | 0.498469 | 1_1:-51643704 | None:intergenic |
| GAAGGCACCAATGTTGATCA+AGG | 0.499839 | 1_1:+51645642 | Msa0027320:CDS |
| GGATCAGGTGGCTGCTGCAA+AGG | 0.506091 | 1_1:+51644707 | Msa0027320:intron |
| AATAGTGAATGCTGCAAAGC+AGG | 0.513542 | 1_1:+51645191 | Msa0027320:CDS |
| GCCATCAAAGATGCATTCCC+CGG | 0.516361 | 1_1:+51641496 | Msa0027320:CDS |
| GAAATTGGCTGCATGGTGAA+TGG | 0.525680 | 1_1:+51644759 | Msa0027320:CDS |
| GAGGAAACCGCTACGCCTCT+GGG | 0.528679 | 1_1:-51641454 | None:intergenic |
| GGTTCACCGATTGGACAAAA+CGG | 0.536083 | 1_1:+51646145 | Msa0027320:three_prime_UTR |
| CTGTTGATTCTGCCATGTGC+CGG | 0.536899 | 1_1:-51641234 | None:intergenic |
| AAAATTCTAGGGTGTAGTAT+TGG | 0.538094 | 1_1:+51641053 | Msa0027320:five_prime_UTR |
| TGATGGTTTGGCTCCTAAAG+TGG | 0.542936 | 1_1:+51643507 | Msa0027320:CDS |
| ACTCTGGATCGTAAGACTGC+TGG | 0.543398 | 1_1:+51643108 | Msa0027320:CDS |
| AAGTGGTATGGCATTAATAA+CGG | 0.545339 | 1_1:+51645797 | Msa0027320:CDS |
| TAGCCGGTGGACGAGGATTG+GGG | 0.546458 | 1_1:+51641909 | Msa0027320:CDS |
| TCTCGCTCTCTCTCCGTCGC+CGG | 0.547633 | 1_1:+51641215 | Msa0027320:CDS |
| GTTACAAATTATTGACGAGA+AGG | 0.549098 | 1_1:+51645926 | Msa0027320:three_prime_UTR |
| GTTTCAACAGGAAAGTGGTA+TGG | 0.559539 | 1_1:+51645785 | Msa0027320:intron |
| AGCCTTCACTTTGTCATCAG+CGG | 0.561020 | 1_1:-51645115 | None:intergenic |
| AGTCCCCAATCCTCGTCCAC+CGG | 0.563023 | 1_1:-51641912 | None:intergenic |
| GGTTTATGCATGTGATTGCA+TGG | 0.563716 | 1_1:+51646039 | Msa0027320:three_prime_UTR |
| TGGTGCTGCCTCTGAAAACC+AGG | 0.565708 | 1_1:+51644857 | Msa0027320:CDS |
| TTACAAATTATTGACGAGAA+GGG | 0.567596 | 1_1:+51645927 | Msa0027320:three_prime_UTR |
| ATACTAGTTACAAAACAGTC+AGG | 0.567777 | 1_1:+51642250 | Msa0027320:CDS |
| TGAATGTTTCAACAGGAAAG+TGG | 0.569848 | 1_1:+51645780 | Msa0027320:intron |
| ATTCTGCCATGTGCCGGCGA+CGG | 0.571062 | 1_1:-51641228 | None:intergenic |
| GACCAGGTTGAAGATATAGC+TGG | 0.576329 | 1_1:+51641977 | Msa0027320:CDS |
| AAGTGTGATGTTATAGCAAG+TGG | 0.576361 | 1_1:+51645168 | Msa0027320:CDS |
| ATGGATATAATTAAGTTGCA+TGG | 0.580190 | 1_1:+51644804 | Msa0027320:CDS |
| CAACTTAATTATATCCATTG+TGG | 0.580693 | 1_1:-51644799 | None:intergenic |
| AACCTAATTGAACAATAATG+TGG | 0.581936 | 1_1:-51646020 | None:intergenic |
| TACTGATGAAGATGCTGCAA+AGG | 0.593207 | 1_1:+51643480 | Msa0027320:CDS |
| ACAAAACAGTCAGGTCCTCA+GGG | 0.599578 | 1_1:+51642259 | Msa0027320:CDS |
| GGATTGGGGACTTTCAAAAG+TGG | 0.603342 | 1_1:+51641923 | Msa0027320:CDS |
| ACTTCGTGATACAACACAAG+AGG | 0.604434 | 1_1:+51643798 | Msa0027320:CDS |
| TAACGTTCCCAGAGGCGTAG+CGG | 0.610301 | 1_1:+51641447 | Msa0027320:CDS |
| TCTTTCACAGATCAATCCCA+TGG | 0.610578 | 1_1:+51643687 | Msa0027320:intron |
| GCATTTAACTATACCTCTCG+AGG | 0.610638 | 1_1:-51643823 | None:intergenic |
| TCAAGGGAAAAGCATTCTGA+AGG | 0.611993 | 1_1:+51645659 | Msa0027320:CDS |
| TATCTCTTTCTGGCGATATG+CGG | 0.620041 | 1_1:-51643770 | None:intergenic |
| AACCGCTGATGACAAAGTGA+AGG | 0.621215 | 1_1:+51645113 | Msa0027320:CDS |
| AGATGGAGAAATTGGCTGCA+TGG | 0.622314 | 1_1:+51644752 | Msa0027320:CDS |
| AAGGCACCAATGTTGATCAA+GGG | 0.623746 | 1_1:+51645643 | Msa0027320:CDS |
| CCGACATCCAGAAAATTGGC+AGG | 0.624013 | 1_1:-51644834 | None:intergenic |
| AAATGCTTTAATAGCTACTG+CGG | 0.631453 | 1_1:-51645979 | None:intergenic |
| TGCATTCCCCGGTCAAAACG+AGG | 0.636965 | 1_1:+51641507 | Msa0027320:CDS |
| AGGGTTAGCAATGGCCACAA+TGG | 0.643855 | 1_1:+51644785 | Msa0027320:CDS |
| CGAGAGGGACCTGATACTCG+TGG | 0.643858 | 1_1:-51641274 | None:intergenic |
| ACCCTAACAACAATGGTCAG+AGG | 0.649848 | 1_1:+51641173 | Msa0027320:exon |
| GAATGGAGCAGGGTTAGCAA+TGG | 0.649914 | 1_1:+51644776 | Msa0027320:CDS |
| GCACATTGTTAAGACTGACC+AGG | 0.652128 | 1_1:+51641961 | Msa0027320:CDS |
| TACCAGCTATATCTTCAACC+TGG | 0.653753 | 1_1:-51641979 | None:intergenic |
| ATCCAAAACCCTAACAACAA+TGG | 0.659235 | 1_1:+51641166 | Msa0027320:exon |
| GATACTCGTGGATGTTGAGA+CGG | 0.670255 | 1_1:-51641262 | None:intergenic |
| AACACAAGAGGATCCTCGAG+AGG | 0.699355 | 1_1:+51643810 | Msa0027320:CDS |
| ACTCGTGGATGTTGAGACGG+CGG | 0.714705 | 1_1:-51641259 | None:intergenic |
| GATATAATTAAGTTGCATGG+CGG | 0.729232 | 1_1:+51644807 | Msa0027320:CDS |
| GCTGCATGGTGAATGGAGCA+GGG | 0.729760 | 1_1:+51644766 | Msa0027320:CDS |
| TTCACAGATCAATCCCATGG+CGG | 0.738791 | 1_1:+51643690 | Msa0027320:intron |
| TATGGAGTTAACGTTCCCAG+AGG | 0.766145 | 1_1:+51641439 | Msa0027320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAATAAAAATAAAAATTCT+AGG | + | chr1_1:51641041-51641060 | Msa0027320:five_prime_UTR | 10.0% |
| !! | AATAAATTAATACTTATGAA+TGG | - | chr1_1:51642093-51642112 | None:intergenic | 10.0% |
| !! | GTATATATAAATAAAACAAT+TGG | - | chr1_1:51642799-51642818 | None:intergenic | 10.0% |
| !!! | AAAATAAGATTTTAATAATC+AGG | - | chr1_1:51644615-51644634 | None:intergenic | 10.0% |
| !!! | TTTTTTTGTTTAACTAATTG+AGG | + | chr1_1:51641635-51641654 | Msa0027320:intron | 15.0% |
| !!! | ATTAAAACATTTTGCAATTA+TGG | - | chr1_1:51641679-51641698 | None:intergenic | 15.0% |
| !!! | ATTTTTTGGTGATTTTTTTT+TGG | + | chr1_1:51642160-51642179 | Msa0027320:intron | 15.0% |
| !! | AAAAAAATAAATAATCCAGT+TGG | - | chr1_1:51642703-51642722 | None:intergenic | 15.0% |
| !!! | TTTAAAATAAAATGGAAGAT+CGG | - | chr1_1:51642916-51642935 | None:intergenic | 15.0% |
| !! | TACGTATATATAAAAAAAAG+TGG | - | chr1_1:51642960-51642979 | None:intergenic | 15.0% |
| !! | TGTAAAAAAAATTAGACAAT+TGG | - | chr1_1:51643036-51643055 | None:intergenic | 15.0% |
| !!! | AATTGTCTAATTTTTTTTAC+AGG | + | chr1_1:51643035-51643054 | Msa0027320:intron | 15.0% |
| !! | TTATTATTGGTCAAATTTAA+AGG | - | chr1_1:51643241-51643260 | None:intergenic | 15.0% |
| !!! | TTATTTTATTTTAAAAGCAC+TGG | + | chr1_1:51645544-51645563 | Msa0027320:intron | 15.0% |
| !!! | TATTTTATTTTAAAAGCACT+GGG | + | chr1_1:51645545-51645564 | Msa0027320:intron | 15.0% |
| !! | TTCAAATTTGAATGTTTAAT+TGG | + | chr1_1:51646210-51646229 | Msa0027320:three_prime_UTR | 15.0% |
| !!! | TAAAGTTTTTATCTTACATT+TGG | + | chr1_1:51646243-51646262 | Msa0027320:three_prime_UTR | 15.0% |
| !!! | TTTTCAATTTTCGTGAAATT+AGG | + | chr1_1:51641396-51641415 | Msa0027320:intron | 20.0% |
| !!! | TTTCAATTTTCGTGAAATTA+GGG | + | chr1_1:51641397-51641416 | Msa0027320:intron | 20.0% |
| !!! | AAAATGTTTTAATGCATGTT+TGG | + | chr1_1:51641686-51641705 | Msa0027320:intron | 20.0% |
| !!! | AGTATAACCTTTAAAATTCA+CGG | - | chr1_1:51641747-51641766 | None:intergenic | 20.0% |
| !! | CATCTTATATAGAATTAGAA+AGG | - | chr1_1:51642065-51642084 | None:intergenic | 20.0% |
| !! | TATTCAATTTGAATTTAGAG+AGG | + | chr1_1:51642109-51642128 | Msa0027320:intron | 20.0% |
| !!! | ACTTGATAATCTAGATTTTT+TGG | + | chr1_1:51642146-51642165 | Msa0027320:intron | 20.0% |
| !!! | TTTTAGAGAACAAAATTGTT+TGG | - | chr1_1:51642354-51642373 | None:intergenic | 20.0% |
| !!! | AAAGTTTAGTCATTTTTTTC+TGG | + | chr1_1:51642555-51642574 | Msa0027320:intron | 20.0% |
| !! | TATACACTTAAAACCATTTA+TGG | + | chr1_1:51642758-51642777 | Msa0027320:intron | 20.0% |
| !! | TTAAAACCATTTATGGTATT+TGG | + | chr1_1:51642765-51642784 | Msa0027320:intron | 20.0% |
| !! | TTAAAATAAAATGGAAGATC+GGG | - | chr1_1:51642915-51642934 | None:intergenic | 20.0% |
| !!! | GTATGCGTTTTAAAATAAAA+TGG | - | chr1_1:51642924-51642943 | None:intergenic | 20.0% |
| !! | ATAAAGTAATATACTGACAT+AGG | - | chr1_1:51643146-51643165 | None:intergenic | 20.0% |
| !! | CTTATTATTGCTTGTAAAAA+GGG | + | chr1_1:51643305-51643324 | Msa0027320:CDS | 20.0% |
| !! | ATTTCCAGATATGATTATTA+AGG | + | chr1_1:51643358-51643377 | Msa0027320:CDS | 20.0% |
| !!! | ATTTCTGTTTTATATTACAC+AGG | + | chr1_1:51643852-51643871 | Msa0027320:intron | 20.0% |
| !!! | TTGTGTCTTTTAACTTTTTT+TGG | + | chr1_1:51644686-51644705 | Msa0027320:intron | 20.0% |
| !! | AAGGCAGATTTAAATTATAT+TGG | + | chr1_1:51644726-51644745 | Msa0027320:CDS | 20.0% |
| !! | AGGCAGATTTAAATTATATT+GGG | + | chr1_1:51644727-51644746 | Msa0027320:CDS | 20.0% |
| !!! | TTAAATTATATTGGGTTAGA+TGG | + | chr1_1:51644735-51644754 | Msa0027320:CDS | 20.0% |
| !! | TTACTATAATTATGTGAATC+AGG | + | chr1_1:51645068-51645087 | Msa0027320:intron | 20.0% |
| !! | ACTATATAAAACTGCTAATA+AGG | - | chr1_1:51645348-51645367 | None:intergenic | 20.0% |
| !!! | TTATTAGCAGTTTTATATAG+TGG | + | chr1_1:51645347-51645366 | Msa0027320:intron | 20.0% |
| !!! | TTTATATAGTGGTTTTTGTT+TGG | + | chr1_1:51645358-51645377 | Msa0027320:intron | 20.0% |
| !!! | ATTTTATTTTAAAAGCACTG+GGG | + | chr1_1:51645546-51645565 | Msa0027320:intron | 20.0% |
| !!! | TAATCTTGCTGTTATTTTTT+AGG | + | chr1_1:51645587-51645606 | Msa0027320:intron | 20.0% |
| !! | AACAAAATAAACTTAAACCT+TGG | - | chr1_1:51646292-51646311 | None:intergenic | 20.0% |
| ! | TATGGAAAACTTCATAACAA+AGG | - | chr1_1:51641661-51641680 | None:intergenic | 25.0% |
| !! | TAGCTTTTACAAAATCACAA+TGG | + | chr1_1:51641770-51641789 | Msa0027320:intron | 25.0% |
| ! | TATATAGAATTAGAAAGGCA+TGG | - | chr1_1:51642060-51642079 | None:intergenic | 25.0% |
| ! | TTTGAATTTAGAGAGGTTAT+AGG | + | chr1_1:51642116-51642135 | Msa0027320:intron | 25.0% |
| !!! | TTGGTGATTTTTTTTTGGTT+TGG | + | chr1_1:51642165-51642184 | Msa0027320:intron | 25.0% |
| !!! | TTTGTCATTGTTGTTTTTTC+AGG | + | chr1_1:51642211-51642230 | Msa0027320:intron | 25.0% |
| !!! | TTGTCATTGTTGTTTTTTCA+GGG | + | chr1_1:51642212-51642231 | Msa0027320:intron | 25.0% |
| !! | TTCTCTAAAAATCGAAATTC+TGG | + | chr1_1:51642364-51642383 | Msa0027320:intron | 25.0% |
| !! | TATTTGAAATTTACACCCTT+TGG | + | chr1_1:51642452-51642471 | Msa0027320:intron | 25.0% |
| !!! | ATGGTTTTAAGTGTATAACT+TGG | - | chr1_1:51642755-51642774 | None:intergenic | 25.0% |
| ! | ATACGTAGAATATATATGCA+AGG | + | chr1_1:51642973-51642992 | Msa0027320:intron | 25.0% |
| ! | TACGTAGAATATATATGCAA+GGG | + | chr1_1:51642974-51642993 | Msa0027320:intron | 25.0% |
| ! | GCAACATAGATGTTTATTAT+TGG | - | chr1_1:51643254-51643273 | None:intergenic | 25.0% |
| ! | GCTTATTATTGCTTGTAAAA+AGG | + | chr1_1:51643304-51643323 | Msa0027320:intron | 25.0% |
| ! | CAAACCTTAATAATCATATC+TGG | - | chr1_1:51643365-51643384 | None:intergenic | 25.0% |
| !! | AACATCTTTTGTAACAATCA+GGG | + | chr1_1:51644019-51644038 | Msa0027320:intron | 25.0% |
| ! | CGAAATAATAACCCAATATT+TGG | - | chr1_1:51644184-51644203 | None:intergenic | 25.0% |
| ! | AAATACATCATGTGAAATCT+TGG | - | chr1_1:51644589-51644608 | None:intergenic | 25.0% |
| ! | AACTGATGATAAGAAACAAA+AGG | - | chr1_1:51644644-51644663 | None:intergenic | 25.0% |
| !!! | CTTTTAACTTTTTTTGGATC+AGG | + | chr1_1:51644692-51644711 | Msa0027320:intron | 25.0% |
| ! | CAACTTAATTATATCCATTG+TGG | - | chr1_1:51644802-51644821 | None:intergenic | 25.0% |
| !! | ATGGATATAATTAAGTTGCA+TGG | + | chr1_1:51644804-51644823 | Msa0027320:CDS | 25.0% |
| ! | ATATGAACAAAAACATCTCA+AGG | - | chr1_1:51645048-51645067 | None:intergenic | 25.0% |
| ! | AGAATAAAGCTGTGTTTAAA+CGG | - | chr1_1:51645259-51645278 | None:intergenic | 25.0% |
| ! | TGGAACTATTTGATATTGAA+AGG | + | chr1_1:51645378-51645397 | Msa0027320:intron | 25.0% |
| !!! | TTTAATTTTGATCTATGACG+TGG | + | chr1_1:51645453-51645472 | Msa0027320:intron | 25.0% |
| !!! | TTAATTTTGATCTATGACGT+GGG | + | chr1_1:51645454-51645473 | Msa0027320:intron | 25.0% |
| !!! | ACAAACCATCTCTTTTAAAA+AGG | + | chr1_1:51645711-51645730 | Msa0027320:intron | 25.0% |
| ! | TTACAAATTATTGACGAGAA+GGG | + | chr1_1:51645927-51645946 | Msa0027320:three_prime_UTR | 25.0% |
| ! | TTCCACATTATTGTTCAATT+AGG | + | chr1_1:51646018-51646037 | Msa0027320:three_prime_UTR | 25.0% |
| ! | AACCTAATTGAACAATAATG+TGG | - | chr1_1:51646023-51646042 | None:intergenic | 25.0% |
| ! | TCTTTCTTACATTTCAAGAT+AGG | + | chr1_1:51646064-51646083 | Msa0027320:three_prime_UTR | 25.0% |
| !! | TGAGGATCTTCAATTTATTT+TGG | + | chr1_1:51646179-51646198 | Msa0027320:three_prime_UTR | 25.0% |
| ! | GGAAAAAAAACTTTACCAAA+TGG | - | chr1_1:51646271-51646290 | None:intergenic | 25.0% |
| !!! | TTGGTAAAGTTTTTTTTCCA+AGG | + | chr1_1:51646272-51646291 | Msa0027320:three_prime_UTR | 25.0% |
| !! | AAAATTCTAGGGTGTAGTAT+TGG | + | chr1_1:51641053-51641072 | Msa0027320:five_prime_UTR | 30.0% |
| TATAGGTCTTTCTTCAACTA+TGG | - | chr1_1:51641107-51641126 | None:intergenic | 30.0% | |
| AATTATGGTCTACAGAATCA+TGG | - | chr1_1:51641537-51641556 | None:intergenic | 30.0% | |
| !! | GTTAAGAGTCAAATTTTAGC+CGG | + | chr1_1:51641893-51641912 | Msa0027320:CDS | 30.0% |
| ! | ACTTTCAAAAGTGGTTTTCA+GGG | + | chr1_1:51641932-51641951 | Msa0027320:CDS | 30.0% |
| TTGAACTGAGAAACAACAAA+GGG | - | chr1_1:51642014-51642033 | None:intergenic | 30.0% | |
| ATTGAACTGAGAAACAACAA+AGG | - | chr1_1:51642015-51642034 | None:intergenic | 30.0% | |
| ATGGACATGAAATGAAAACA+AGG | - | chr1_1:51642041-51642060 | None:intergenic | 30.0% | |
| ATACTAGTTACAAAACAGTC+AGG | + | chr1_1:51642250-51642269 | Msa0027320:CDS | 30.0% | |
| TGTAAAGAAAAAAAGTCCCA+CGG | - | chr1_1:51642484-51642503 | None:intergenic | 30.0% | |
| TTTACATGCAATATGTCTGT+CGG | + | chr1_1:51642498-51642517 | Msa0027320:intron | 30.0% | |
| !!! | TTTTTTTAAAAGTGGCCAAC+TGG | + | chr1_1:51642718-51642737 | Msa0027320:intron | 30.0% |
| AACCATTTATGGTATTTGGT+AGG | + | chr1_1:51642769-51642788 | Msa0027320:intron | 30.0% | |
| AAAAACCACTTGGAATCTAA+CGG | - | chr1_1:51642824-51642843 | None:intergenic | 30.0% | |
| TGATCAATACAAAAACCACT+TGG | - | chr1_1:51642834-51642853 | None:intergenic | 30.0% | |
| !! | AGTGGTTTTTGTATTGATCA+TGG | + | chr1_1:51642834-51642853 | Msa0027320:intron | 30.0% |
| ! | GGAAGTAAATTTTCGTCAAT+TGG | + | chr1_1:51642855-51642874 | Msa0027320:intron | 30.0% |
| ACGTAGAATATATATGCAAG+GGG | + | chr1_1:51642975-51642994 | Msa0027320:intron | 30.0% | |
| ! | AATGTACTTTGCTATAACTC+TGG | + | chr1_1:51643092-51643111 | Msa0027320:CDS | 30.0% |
| ATTATTGCTTGTAAAAAGGG+AGG | + | chr1_1:51643308-51643327 | Msa0027320:CDS | 30.0% | |
| ! | TATCTGGAAATTTTTCTGCA+AGG | - | chr1_1:51643349-51643368 | None:intergenic | 30.0% |
| ! | TGTTACTCTTGACATTTTTC+TGG | + | chr1_1:51643383-51643402 | Msa0027320:intron | 30.0% |
| ! | GTTACTCTTGACATTTTTCT+GGG | + | chr1_1:51643384-51643403 | Msa0027320:intron | 30.0% |
| GAAGTTTGAATATCTCTTTC+TGG | - | chr1_1:51643783-51643802 | None:intergenic | 30.0% | |
| ! | GAACATCTTTTGTAACAATC+AGG | + | chr1_1:51644018-51644037 | Msa0027320:intron | 30.0% |
| TCTGCATGTAAACCAAATAT+TGG | + | chr1_1:51644169-51644188 | Msa0027320:intron | 30.0% | |
| CTGCATGTAAACCAAATATT+GGG | + | chr1_1:51644170-51644189 | Msa0027320:intron | 30.0% | |
| ATTGGGTTATTATTTCGACA+AGG | + | chr1_1:51644187-51644206 | Msa0027320:intron | 30.0% | |
| AATTGTCCTGGATAAAATGT+TGG | + | chr1_1:51644221-51644240 | Msa0027320:intron | 30.0% | |
| TTGTGCTTATGATACAGTTA+TGG | + | chr1_1:51644374-51644393 | Msa0027320:intron | 30.0% | |
| TGTATGTAGCTAATTAAGCT+AGG | - | chr1_1:51644469-51644488 | None:intergenic | 30.0% | |
| TTGTGCTTATGATACAGTTA+TGG | + | chr1_1:51644374-51644393 | Msa0027320:intron | 30.0% | |
| !!! | TTAACTTTTTTTGGATCAGG+TGG | + | chr1_1:51644695-51644714 | Msa0027320:intron | 30.0% |
| ! | GATATAATTAAGTTGCATGG+CGG | + | chr1_1:51644807-51644826 | Msa0027320:CDS | 30.0% |
| ATAAAAACCCTCTGAATTTC+AGG | - | chr1_1:51644963-51644982 | None:intergenic | 30.0% | |
| CTATAATTATGTGAATCAGG+TGG | + | chr1_1:51645071-51645090 | Msa0027320:intron | 30.0% | |
| !!! | GCTATTTTGGTTAACATCTT+TGG | + | chr1_1:51645135-51645154 | Msa0027320:CDS | 30.0% |
| !!! | ATTTTGGTTAACATCTTTGG+CGG | + | chr1_1:51645138-51645157 | Msa0027320:CDS | 30.0% |
| !! | AAACGGCATCAATTTTGTTT+TGG | - | chr1_1:51645242-51645261 | None:intergenic | 30.0% |
| TTCTTTCTCCTACATATGAT+AGG | + | chr1_1:51645275-51645294 | Msa0027320:intron | 30.0% | |
| TCTTTCTCCTACATATGATA+GGG | + | chr1_1:51645276-51645295 | Msa0027320:intron | 30.0% | |
| !! | TGCTTCCTTTTTAAAAGAGA+TGG | - | chr1_1:51645719-51645738 | None:intergenic | 30.0% |
| TTCATTGTGAATGTTTCAAC+AGG | + | chr1_1:51645773-51645792 | Msa0027320:intron | 30.0% | |
| AAGTGGTATGGCATTAATAA+CGG | + | chr1_1:51645797-51645816 | Msa0027320:CDS | 30.0% | |
| ATTAATAACGGCTGAAGATT+TGG | + | chr1_1:51645809-51645828 | Msa0027320:CDS | 30.0% | |
| AAATTGCGTTGTAACTAAAC+TGG | - | chr1_1:51645899-51645918 | None:intergenic | 30.0% | |
| ! | TCGTCAATAATTTGTAACTC+AGG | - | chr1_1:51645924-51645943 | None:intergenic | 30.0% |
| GTTACAAATTATTGACGAGA+AGG | + | chr1_1:51645926-51645945 | Msa0027320:three_prime_UTR | 30.0% | |
| AAATGCTTTAATAGCTACTG+CGG | - | chr1_1:51645982-51646001 | None:intergenic | 30.0% | |
| !! | TGTGGAAAGTGTTTACTTAT+TGG | - | chr1_1:51646005-51646024 | None:intergenic | 30.0% |
| AATACAGTCTGTTGAACATA+TGG | + | chr1_1:51646124-51646143 | Msa0027320:three_prime_UTR | 30.0% | |
| ! | ATCTTACATTTGGTTCCATT+TGG | + | chr1_1:51646253-51646272 | Msa0027320:three_prime_UTR | 30.0% |
| ! | GAACTTGATTCGATCGATAT+AGG | - | chr1_1:51641124-51641143 | None:intergenic | 35.0% |
| !!! | TTGTTGTTAGGGTTTTGGAT+CGG | - | chr1_1:51641166-51641185 | None:intergenic | 35.0% |
| ATCCAAAACCCTAACAACAA+TGG | + | chr1_1:51641166-51641185 | Msa0027320:exon | 35.0% | |
| TGAATAAACGAATCTCGAGA+GGG | - | chr1_1:51641292-51641311 | None:intergenic | 35.0% | |
| GCTGAATTGATGAGCAAATA+TGG | + | chr1_1:51641421-51641440 | Msa0027320:CDS | 35.0% | |
| ! | TTTTCTGACTTCTTCAACTG+AGG | - | chr1_1:51641476-51641495 | None:intergenic | 35.0% |
| ! | TCAAGTGATGGTGTGAATTA+TGG | - | chr1_1:51641552-51641571 | None:intergenic | 35.0% |
| TTTCAGCAAACATCAAGTGA+TGG | - | chr1_1:51641564-51641583 | None:intergenic | 35.0% | |
| TTAAAATTCACGGTAGCTCA+CGG | - | chr1_1:51641737-51641756 | None:intergenic | 35.0% | |
| ! | TGAGCTACCGTGAATTTTAA+AGG | + | chr1_1:51641737-51641756 | Msa0027320:intron | 35.0% |
| AATTGGGATTATTGTGCAGT+TGG | + | chr1_1:51641868-51641887 | Msa0027320:intron | 35.0% | |
| ! | GACTTTCAAAAGTGGTTTTC+AGG | + | chr1_1:51641931-51641950 | Msa0027320:CDS | 35.0% |
| !!! | TTTTTTCAGGGAAGATGCTT+GGG | + | chr1_1:51642224-51642243 | Msa0027320:intron | 35.0% |
| ! | TTGCTAACAATTTTTCCCTG+AGG | - | chr1_1:51642277-51642296 | None:intergenic | 35.0% |
| TCAGGGAAAAATTGTTAGCA+AGG | + | chr1_1:51642276-51642295 | Msa0027320:CDS | 35.0% | |
| TTGGATAACAAATGTCCAGT+TGG | - | chr1_1:51642736-51642755 | None:intergenic | 35.0% | |
| AGCCTACCAAATACCATAAA+TGG | - | chr1_1:51642774-51642793 | None:intergenic | 35.0% | |
| CGTAGAATATATATGCAAGG+GGG | + | chr1_1:51642976-51642995 | Msa0027320:intron | 35.0% | |
| TACTGACATAGGAAACTTAC+CGG | - | chr1_1:51643135-51643154 | None:intergenic | 35.0% | |
| ! | ATGCATTCCTTCTTTCTAGT+AGG | + | chr1_1:51643432-51643451 | Msa0027320:intron | 35.0% |
| !! | GTACCTGTTGATGTTTTTGA+AGG | + | chr1_1:51643454-51643473 | Msa0027320:CDS | 35.0% |
| AGTCCTTCAAAAACATCAAC+AGG | - | chr1_1:51643460-51643479 | None:intergenic | 35.0% | |
| ! | TGATTTCTATCAGCCACTTT+AGG | - | chr1_1:51643523-51643542 | None:intergenic | 35.0% |
| CCCAACCCAAAAATATATCA+GGG | - | chr1_1:51643944-51643963 | None:intergenic | 35.0% | |
| !!! | CCCTGATATATTTTTGGGTT+GGG | + | chr1_1:51643941-51643960 | Msa0027320:intron | 35.0% |
| ACCCAACCCAAAAATATATC+AGG | - | chr1_1:51643945-51643964 | None:intergenic | 35.0% | |
| GTTGGGTTCAATTCACATTT+CGG | + | chr1_1:51643958-51643977 | Msa0027320:intron | 35.0% | |
| TTGGGTTCAATTCACATTTC+GGG | + | chr1_1:51643959-51643978 | Msa0027320:intron | 35.0% | |
| GATGTTCTACAATATTGTGC+AGG | - | chr1_1:51644005-51644024 | None:intergenic | 35.0% | |
| ! | CATTTTATCCAGGACAATTC+TGG | - | chr1_1:51644220-51644239 | None:intergenic | 35.0% |
| ! | CACAATCCAACATTTTATCC+AGG | - | chr1_1:51644230-51644249 | None:intergenic | 35.0% |
| ! | TTTAGGAGTGTGTATAAGAC+AGG | - | chr1_1:51644285-51644304 | None:intergenic | 35.0% |
| !! | TTAAGCTAGGCTCTAAGTTT+AGG | - | chr1_1:51644302-51644321 | None:intergenic | 35.0% |
| !! | TAAGCTAGGCTCTAAGTTTA+GGG | - | chr1_1:51644301-51644320 | None:intergenic | 35.0% |
| !! | TTAAGCTAGGCTCTAAGTTT+AGG | - | chr1_1:51644302-51644321 | None:intergenic | 35.0% |
| CTTATGATACAGTTATGGAG+TGG | + | chr1_1:51644379-51644398 | Msa0027320:intron | 35.0% | |
| ! | ATTGGGTTAGATGGAGAAAT+TGG | + | chr1_1:51644744-51644763 | Msa0027320:CDS | 35.0% |
| !! | ATACATTACCTGGTTTTCAG+AGG | - | chr1_1:51644868-51644887 | None:intergenic | 35.0% |
| CTTGTCTGTAATACATTACC+TGG | - | chr1_1:51644878-51644897 | None:intergenic | 35.0% | |
| ! | AGACAAGATTGCTCTCATTT+TGG | + | chr1_1:51644891-51644910 | Msa0027320:intron | 35.0% |
| TGCATTAACCTGAAATTCAG+AGG | + | chr1_1:51644952-51644971 | Msa0027320:intron | 35.0% | |
| GCATTAACCTGAAATTCAGA+GGG | + | chr1_1:51644953-51644972 | Msa0027320:intron | 35.0% | |
| TAGTGAGTAGCAACAACTAA+AGG | - | chr1_1:51644997-51645016 | None:intergenic | 35.0% | |
| AGATACCACCTTCAATGATT+TGG | + | chr1_1:51645016-51645035 | Msa0027320:intron | 35.0% | |
| ! | TGACAAAGTGAAGGCTATTT+TGG | + | chr1_1:51645122-51645141 | Msa0027320:CDS | 35.0% |
| AAGTGTGATGTTATAGCAAG+TGG | + | chr1_1:51645168-51645187 | Msa0027320:CDS | 35.0% | |
| GTTCATTCCCTATCATATGT+AGG | - | chr1_1:51645286-51645305 | None:intergenic | 35.0% | |
| ACATATGATAGGGAATGAAC+AGG | + | chr1_1:51645286-51645305 | Msa0027320:intron | 35.0% | |
| CATATGATAGGGAATGAACA+GGG | + | chr1_1:51645287-51645306 | Msa0027320:intron | 35.0% | |
| TATGACGTGGGTTTAGATAT+TGG | + | chr1_1:51645466-51645485 | Msa0027320:intron | 35.0% | |
| !!! | TATTTTAAAAGCACTGGGGT+CGG | + | chr1_1:51645550-51645569 | Msa0027320:intron | 35.0% |
| TGAATGTTTCAACAGGAAAG+TGG | + | chr1_1:51645780-51645799 | Msa0027320:intron | 35.0% | |
| ! | GACTGTATTTTCATGTTCAC+TGG | - | chr1_1:51646113-51646132 | None:intergenic | 35.0% |
| !!! | AAAACGGCTGCTTTTAATTG+AGG | + | chr1_1:51646161-51646180 | Msa0027320:three_prime_UTR | 35.0% |
| CGGATTCGATTGAGGAAAAA+TGG | - | chr1_1:51641146-51641165 | None:intergenic | 40.0% | |
| ! | TTTTGGATCGGATTCGATTG+AGG | - | chr1_1:51641154-51641173 | None:intergenic | 40.0% |
| !! | GACCATTGTTGTTAGGGTTT+TGG | - | chr1_1:51641171-51641190 | None:intergenic | 40.0% |
| ! | TCCTCTGACCATTGTTGTTA+GGG | - | chr1_1:51641177-51641196 | None:intergenic | 40.0% |
| ! | ATCCTCTGACCATTGTTGTT+AGG | - | chr1_1:51641178-51641197 | None:intergenic | 40.0% |
| GTGAATAAACGAATCTCGAG+AGG | - | chr1_1:51641293-51641312 | None:intergenic | 40.0% | |
| !! | ATGGATTACCTCGTTTTGAC+CGG | - | chr1_1:51641518-51641537 | None:intergenic | 40.0% |
| ATGCATGTTTGGTATCACGA+CGG | + | chr1_1:51641697-51641716 | Msa0027320:intron | 40.0% | |
| ACAGTGATACTGAACATGAG+TGG | + | chr1_1:51641816-51641835 | Msa0027320:intron | 40.0% | |
| !!! | GGAGAATTTTGACTGTGATG+AGG | + | chr1_1:51641837-51641856 | Msa0027320:intron | 40.0% |
| !!! | ATTTTGACTGTGATGAGGAG+TGG | + | chr1_1:51641842-51641861 | Msa0027320:intron | 40.0% |
| TGATGAGGAGTGGTGTAATT+GGG | + | chr1_1:51641852-51641871 | Msa0027320:intron | 40.0% | |
| !! | AAGAGTCAAATTTTAGCCGG+TGG | + | chr1_1:51641896-51641915 | Msa0027320:CDS | 40.0% |
| !! | TTCAAAAGTGGTTTTCAGGG+AGG | + | chr1_1:51641935-51641954 | Msa0027320:CDS | 40.0% |
| TACCAGCTATATCTTCAACC+TGG | - | chr1_1:51641982-51642001 | None:intergenic | 40.0% | |
| ATGACGATGACAACAGCAAT+AGG | - | chr1_1:51642192-51642211 | None:intergenic | 40.0% | |
| !!! | GTTTTTTCAGGGAAGATGCT+TGG | + | chr1_1:51642223-51642242 | Msa0027320:intron | 40.0% |
| AAGAAAAAAAGTCCCACGGT+GGG | - | chr1_1:51642480-51642499 | None:intergenic | 40.0% | |
| AAAGAAAAAAAGTCCCACGG+TGG | - | chr1_1:51642481-51642500 | None:intergenic | 40.0% | |
| AGCACTTGAAACTGGTAAAC+CGG | + | chr1_1:51642654-51642673 | Msa0027320:intron | 40.0% | |
| AACTGGTAAACCGGTACAAA+TGG | + | chr1_1:51642663-51642682 | Msa0027320:intron | 40.0% | |
| TACTTCCGTTAGATTCCAAG+TGG | + | chr1_1:51642816-51642835 | Msa0027320:intron | 40.0% | |
| CTAGAAAGAAGGAATGCATC+AGG | - | chr1_1:51643431-51643450 | None:intergenic | 40.0% | |
| ACAGGTACCTACTAGAAAGA+AGG | - | chr1_1:51643442-51643461 | None:intergenic | 40.0% | |
| TACTGATGAAGATGCTGCAA+AGG | + | chr1_1:51643480-51643499 | Msa0027320:CDS | 40.0% | |
| !! | TGCAAAGGTTGTTGATGGTT+TGG | + | chr1_1:51643495-51643514 | Msa0027320:CDS | 40.0% |
| ! | TGATTCTGACTGCACTCTTT+TGG | + | chr1_1:51643582-51643601 | Msa0027320:CDS | 40.0% |
| TCTTTCACAGATCAATCCCA+TGG | + | chr1_1:51643687-51643706 | Msa0027320:intron | 40.0% | |
| ! | TATCTCTTTCTGGCGATATG+CGG | - | chr1_1:51643773-51643792 | None:intergenic | 40.0% |
| ACTTCGTGATACAACACAAG+AGG | + | chr1_1:51643798-51643817 | Msa0027320:CDS | 40.0% | |
| GCATTTAACTATACCTCTCG+AGG | - | chr1_1:51643826-51643845 | None:intergenic | 40.0% | |
| ! | TGGACTCAAGTTGTAATGAC+GGG | - | chr1_1:51643905-51643924 | None:intergenic | 40.0% |
| ! | CTGGACTCAAGTTGTAATGA+CGG | - | chr1_1:51643906-51643925 | None:intergenic | 40.0% |
| GTCATTACAACTTGAGTCCA+GGG | + | chr1_1:51643905-51643924 | Msa0027320:intron | 40.0% | |
| TCATTACAACTTGAGTCCAG+GGG | + | chr1_1:51643906-51643925 | Msa0027320:intron | 40.0% | |
| ! | AGCCAGCCCTGATATATTTT+TGG | + | chr1_1:51643935-51643954 | Msa0027320:intron | 40.0% |
| ! | GCCAGCCCTGATATATTTTT+GGG | + | chr1_1:51643936-51643955 | Msa0027320:intron | 40.0% |
| ACCCAAAAATATATCAGGGC+TGG | - | chr1_1:51643940-51643959 | None:intergenic | 40.0% | |
| !!! | GCCCTGATATATTTTTGGGT+TGG | + | chr1_1:51643940-51643959 | Msa0027320:intron | 40.0% |
| GTGTATAAGACAGGATGAGA+TGG | - | chr1_1:51644276-51644295 | None:intergenic | 40.0% | |
| CGCAAGTAGCTAATTAAGCT+AGG | - | chr1_1:51644315-51644334 | None:intergenic | 40.0% | |
| ACACTGATGCTTTCGATATC+TGG | + | chr1_1:51644348-51644367 | Msa0027320:intron | 40.0% | |
| TACAGTTATGGAGTGAAGTG+AGG | + | chr1_1:51644386-51644405 | Msa0027320:intron | 40.0% | |
| GAGTGAAGTGAGGTTCTATA+TGG | + | chr1_1:51644396-51644415 | Msa0027320:intron | 40.0% | |
| !! | TTTAGGGGTGCTTATGAAAC+AGG | - | chr1_1:51644439-51644458 | None:intergenic | 40.0% |
| !! | AAGCTAGGCTCTAAGTTTAG+GGG | - | chr1_1:51644300-51644319 | None:intergenic | 40.0% |
| AGAGACCAAATCATTGAAGG+TGG | - | chr1_1:51645024-51645043 | None:intergenic | 40.0% | |
| AATAGTGAATGCTGCAAAGC+AGG | + | chr1_1:51645191-51645210 | Msa0027320:CDS | 40.0% | |
| !!! | ATTTTAAAAGCACTGGGGTC+GGG | + | chr1_1:51645551-51645570 | Msa0027320:intron | 40.0% |
| CCTTCAAGACGAACTATTAC+TGG | - | chr1_1:51645627-51645646 | None:intergenic | 40.0% | |
| CCAGTAATAGTTCGTCTTGA+AGG | + | chr1_1:51645624-51645643 | Msa0027320:CDS | 40.0% | |
| ! | AAGGCACCAATGTTGATCAA+GGG | + | chr1_1:51645643-51645662 | Msa0027320:CDS | 40.0% |
| ! | GCTTTTCCCTTGATCAACAT+TGG | - | chr1_1:51645652-51645671 | None:intergenic | 40.0% |
| !! | TCAAGGGAAAAGCATTCTGA+AGG | + | chr1_1:51645659-51645678 | Msa0027320:CDS | 40.0% |
| GTTTCAACAGGAAAGTGGTA+TGG | + | chr1_1:51645785-51645804 | Msa0027320:intron | 40.0% | |
| GGTTTATGCATGTGATTGCA+TGG | + | chr1_1:51646039-51646058 | Msa0027320:three_prime_UTR | 40.0% | |
| TGAACATATGGTTCACCGAT+TGG | + | chr1_1:51646136-51646155 | Msa0027320:three_prime_UTR | 40.0% | |
| ACCCTAACAACAATGGTCAG+AGG | + | chr1_1:51641173-51641192 | Msa0027320:exon | 45.0% | |
| GATACTCGTGGATGTTGAGA+CGG | - | chr1_1:51641265-51641284 | None:intergenic | 45.0% | |
| TCTCAACATCCACGAGTATC+AGG | + | chr1_1:51641265-51641284 | Msa0027320:CDS | 45.0% | |
| TATGGAGTTAACGTTCCCAG+AGG | + | chr1_1:51641439-51641458 | Msa0027320:CDS | 45.0% | |
| !! | TGGATTACCTCGTTTTGACC+GGG | - | chr1_1:51641517-51641536 | None:intergenic | 45.0% |
| TGCATGTTTGGTATCACGAC+GGG | + | chr1_1:51641698-51641717 | Msa0027320:intron | 45.0% | |
| ACAATGGCTCAATGTGACTC+TGG | + | chr1_1:51641786-51641805 | Msa0027320:intron | 45.0% | |
| GTGATGAGGAGTGGTGTAAT+TGG | + | chr1_1:51641851-51641870 | Msa0027320:intron | 45.0% | |
| TGGGATTATTGTGCAGTTGG+TGG | + | chr1_1:51641871-51641890 | Msa0027320:intron | 45.0% | |
| GGATTGGGGACTTTCAAAAG+TGG | + | chr1_1:51641923-51641942 | Msa0027320:CDS | 45.0% | |
| GCACATTGTTAAGACTGACC+AGG | + | chr1_1:51641961-51641980 | Msa0027320:CDS | 45.0% | |
| ! | GACCAGGTTGAAGATATAGC+TGG | + | chr1_1:51641977-51641996 | Msa0027320:CDS | 45.0% |
| TACAAAACAGTCAGGTCCTC+AGG | + | chr1_1:51642258-51642277 | Msa0027320:CDS | 45.0% | |
| ACAAAACAGTCAGGTCCTCA+GGG | + | chr1_1:51642259-51642278 | Msa0027320:CDS | 45.0% | |
| ATGCAATATGTCTGTCGGAG+AGG | + | chr1_1:51642503-51642522 | Msa0027320:intron | 45.0% | |
| ! | TTTTTCTGGACTGATCCTGC+TGG | + | chr1_1:51642569-51642588 | Msa0027320:intron | 45.0% |
| CTGAAATCCAACGCCCAAAT+TGG | - | chr1_1:51642620-51642639 | None:intergenic | 45.0% | |
| !! | TACCAGTTTCAAGTGCTGGA+CGG | - | chr1_1:51642651-51642670 | None:intergenic | 45.0% |
| ! | GGTTTACCAGTTTCAAGTGC+TGG | - | chr1_1:51642655-51642674 | None:intergenic | 45.0% |
| TTCTGCAAGGTCTTCAATGC+TGG | - | chr1_1:51643336-51643355 | None:intergenic | 45.0% | |
| GATGCTGCAAAGGTTGTTGA+TGG | + | chr1_1:51643490-51643509 | Msa0027320:CDS | 45.0% | |
| ! | TGATGGTTTGGCTCCTAAAG+TGG | + | chr1_1:51643507-51643526 | Msa0027320:CDS | 45.0% |
| TTCACAGATCAATCCCATGG+CGG | + | chr1_1:51643690-51643709 | Msa0027320:intron | 45.0% | |
| TAGCATCAGCAGCTACTAGT+TGG | - | chr1_1:51643729-51643748 | None:intergenic | 45.0% | |
| ! | TCAAGTTGTAATGACGGGGT+GGG | - | chr1_1:51643900-51643919 | None:intergenic | 45.0% |
| ! | GGACTCAAGTTGTAATGACG+GGG | - | chr1_1:51643904-51643923 | None:intergenic | 45.0% |
| CGTCATTACAACTTGAGTCC+AGG | + | chr1_1:51643904-51643923 | Msa0027320:intron | 45.0% | |
| TACAGTTATGGAGTGGAGTG+AGG | + | chr1_1:51644548-51644567 | Msa0027320:intron | 45.0% | |
| !! | GAGTGGAGTGAGGTTCTAAA+TGG | + | chr1_1:51644558-51644577 | Msa0027320:intron | 45.0% |
| AGATGGAGAAATTGGCTGCA+TGG | + | chr1_1:51644752-51644771 | Msa0027320:CDS | 45.0% | |
| GAAATTGGCTGCATGGTGAA+TGG | + | chr1_1:51644759-51644778 | Msa0027320:CDS | 45.0% | |
| ! | CCTGCCAATTTTCTGGATGT+CGG | + | chr1_1:51644834-51644853 | Msa0027320:CDS | 45.0% |
| ACCACCGACATCCAGAAAAT+TGG | - | chr1_1:51644841-51644860 | None:intergenic | 45.0% | |
| GGCAGAGACCAAATCATTGA+AGG | - | chr1_1:51645027-51645046 | None:intergenic | 45.0% | |
| AACCGCTGATGACAAAGTGA+AGG | + | chr1_1:51645113-51645132 | Msa0027320:CDS | 45.0% | |
| AGCCTTCACTTTGTCATCAG+CGG | - | chr1_1:51645118-51645137 | None:intergenic | 45.0% | |
| !! | GAAGGCACCAATGTTGATCA+AGG | + | chr1_1:51645642-51645661 | Msa0027320:CDS | 45.0% |
| ! | GGTTCACCGATTGGACAAAA+CGG | + | chr1_1:51646145-51646164 | Msa0027320:three_prime_UTR | 45.0% |
| !! | AAGCAGCCGTTTTGTCCAAT+CGG | - | chr1_1:51646154-51646173 | None:intergenic | 45.0% |
| !! | AAATAAAAATAAAAATTCTA+GGG | + | chr1_1:51641042-51641061 | Msa0027320:five_prime_UTR | 5.0% |
| !!! | TATTTATTTTTTTTTAAAAG+TGG | + | chr1_1:51642710-51642729 | Msa0027320:intron | 5.0% |
| !!! | ATGAAATTTAAAATAAAAAA+AGG | - | chr1_1:51644139-51644158 | None:intergenic | 5.0% |
| !!! | TTTTAAAATAAAATAAAGAA+AGG | - | chr1_1:51645540-51645559 | None:intergenic | 5.0% |
| !! | CTGTTGATTCTGCCATGTGC+CGG | - | chr1_1:51641237-51641256 | None:intergenic | 50.0% |
| GCCATCAAAGATGCATTCCC+CGG | + | chr1_1:51641496-51641515 | Msa0027320:CDS | 50.0% | |
| ACCGGGGAATGCATCTTTGA+TGG | - | chr1_1:51641500-51641519 | None:intergenic | 50.0% | |
| !! | GGATTACCTCGTTTTGACCG+GGG | - | chr1_1:51641516-51641535 | None:intergenic | 50.0% |
| !! | CAAATTTTAGCCGGTGGACG+AGG | + | chr1_1:51641902-51641921 | Msa0027320:CDS | 50.0% |
| AGTTTACCAGTCCAACCAGC+AGG | - | chr1_1:51642587-51642606 | None:intergenic | 50.0% | |
| !! | TGCTGGTTGGACTGGTAAAC+TGG | + | chr1_1:51642586-51642605 | Msa0027320:intron | 50.0% |
| AACTGGCCACCAGACCAATT+TGG | + | chr1_1:51642603-51642622 | Msa0027320:intron | 50.0% | |
| ACTGGCCACCAGACCAATTT+GGG | + | chr1_1:51642604-51642623 | Msa0027320:intron | 50.0% | |
| ATCCAACGCCCAAATTGGTC+TGG | - | chr1_1:51642615-51642634 | None:intergenic | 50.0% | |
| AACCGTCCAGCACTTGAAAC+TGG | + | chr1_1:51642646-51642665 | Msa0027320:intron | 50.0% | |
| TCCAACGACGCCATTTGTAC+CGG | - | chr1_1:51642676-51642695 | None:intergenic | 50.0% | |
| ACTCTGGATCGTAAGACTGC+TGG | + | chr1_1:51643108-51643127 | Msa0027320:CDS | 50.0% | |
| TTATCAGCTGTCTCCGCCAT+GGG | - | chr1_1:51643706-51643725 | None:intergenic | 50.0% | |
| AACACAAGAGGATCCTCGAG+AGG | + | chr1_1:51643810-51643829 | Msa0027320:CDS | 50.0% | |
| ! | CTCAAGTTGTAATGACGGGG+TGG | - | chr1_1:51643901-51643920 | None:intergenic | 50.0% |
| ! | CATTTCGGGTAAGCCCAAGT+CGG | + | chr1_1:51643973-51643992 | Msa0027320:intron | 50.0% |
| GTCTGTCTCCAGAATTGTCC+TGG | + | chr1_1:51644209-51644228 | Msa0027320:intron | 50.0% | |
| ! | GAATGGAGCAGGGTTAGCAA+TGG | + | chr1_1:51644776-51644795 | Msa0027320:CDS | 50.0% |
| ! | AGGGTTAGCAATGGCCACAA+TGG | + | chr1_1:51644785-51644804 | Msa0027320:CDS | 50.0% |
| ! | CGGTACTCCTGCCAATTTTC+TGG | + | chr1_1:51644827-51644846 | Msa0027320:CDS | 50.0% |
| CCGACATCCAGAAAATTGGC+AGG | - | chr1_1:51644837-51644856 | None:intergenic | 50.0% | |
| ! | GCCAATTTTCTGGATGTCGG+TGG | + | chr1_1:51644837-51644856 | Msa0027320:CDS | 50.0% |
| ACTCGTGGATGTTGAGACGG+CGG | - | chr1_1:51641262-51641281 | None:intergenic | 55.0% | |
| ! | TAACGTTCCCAGAGGCGTAG+CGG | + | chr1_1:51641447-51641466 | Msa0027320:CDS | 55.0% |
| TGCATTCCCCGGTCAAAACG+AGG | + | chr1_1:51641507-51641526 | Msa0027320:CDS | 55.0% | |
| TTTAGCCGGTGGACGAGGAT+TGG | + | chr1_1:51641907-51641926 | Msa0027320:CDS | 55.0% | |
| TTAGCCGGTGGACGAGGATT+GGG | + | chr1_1:51641908-51641927 | Msa0027320:CDS | 55.0% | |
| TCTGGACTGATCCTGCTGGT+TGG | + | chr1_1:51642573-51642592 | Msa0027320:intron | 55.0% | |
| ! | ACTGATCCTGCTGGTTGGAC+TGG | + | chr1_1:51642578-51642597 | Msa0027320:intron | 55.0% |
| ! | CAACGCCCAAATTGGTCTGG+TGG | - | chr1_1:51642612-51642631 | None:intergenic | 55.0% |
| CACCAGACCAATTTGGGCGT+TGG | + | chr1_1:51642610-51642629 | Msa0027320:intron | 55.0% | |
| ACCGGTACAAATGGCGTCGT+TGG | + | chr1_1:51642672-51642691 | Msa0027320:intron | 55.0% | |
| GGATCGTAAGACTGCTGGTC+CGG | + | chr1_1:51643113-51643132 | Msa0027320:CDS | 55.0% | |
| GTTATCAGCTGTCTCCGCCA+TGG | - | chr1_1:51643707-51643726 | None:intergenic | 55.0% | |
| ! | GTAATGACGGGGTGGGTCTA+GGG | - | chr1_1:51643893-51643912 | None:intergenic | 55.0% |
| ! | TGTAATGACGGGGTGGGTCT+AGG | - | chr1_1:51643894-51643913 | None:intergenic | 55.0% |
| !! | GTGCAGGATAGTGCCGACTT+GGG | - | chr1_1:51643989-51644008 | None:intergenic | 55.0% |
| !! | TGTGCAGGATAGTGCCGACT+TGG | - | chr1_1:51643990-51644009 | None:intergenic | 55.0% |
| GCTGCATGGTGAATGGAGCA+GGG | + | chr1_1:51644766-51644785 | Msa0027320:CDS | 55.0% | |
| !! | TGGTGCTGCCTCTGAAAACC+AGG | + | chr1_1:51644857-51644876 | Msa0027320:CDS | 55.0% |
| ! | ATTCTGCCATGTGCCGGCGA+CGG | - | chr1_1:51641231-51641250 | None:intergenic | 60.0% |
| CGAGAGGGACCTGATACTCG+TGG | - | chr1_1:51641277-51641296 | None:intergenic | 60.0% | |
| GAGGAAACCGCTACGCCTCT+GGG | - | chr1_1:51641457-51641476 | None:intergenic | 60.0% | |
| TGAGGAAACCGCTACGCCTC+TGG | - | chr1_1:51641458-51641477 | None:intergenic | 60.0% | |
| TAGCCGGTGGACGAGGATTG+GGG | + | chr1_1:51641909-51641928 | Msa0027320:CDS | 60.0% | |
| AGTCCCCAATCCTCGTCCAC+CGG | - | chr1_1:51641915-51641934 | None:intergenic | 60.0% | |
| ACACCCTTTGGATCCCACCG+TGG | + | chr1_1:51642464-51642483 | Msa0027320:intron | 60.0% | |
| CACCCTTTGGATCCCACCGT+GGG | + | chr1_1:51642465-51642484 | Msa0027320:intron | 60.0% | |
| GTCCCACGGTGGGATCCAAA+GGG | - | chr1_1:51642470-51642489 | None:intergenic | 60.0% | |
| AGTCCCACGGTGGGATCCAA+AGG | - | chr1_1:51642471-51642490 | None:intergenic | 60.0% | |
| !! | GCGTCGTTGGACTAGCCAAC+TGG | + | chr1_1:51642685-51642704 | Msa0027320:intron | 60.0% |
| !! | AGGGCTGGCTAGAAAACCCC+TGG | - | chr1_1:51643925-51643944 | None:intergenic | 60.0% |
| GGATCAGGTGGCTGCTGCAA+AGG | + | chr1_1:51644707-51644726 | Msa0027320:intron | 60.0% | |
| GGCTGCATGGTGAATGGAGC+AGG | + | chr1_1:51644765-51644784 | Msa0027320:CDS | 60.0% | |
| TCTCGCTCTCTCTCCGTCGC+CGG | + | chr1_1:51641215-51641234 | Msa0027320:CDS | 65.0% | |
| CTCTCTCCGTCGCCGGCACA+TGG | + | chr1_1:51641222-51641241 | Msa0027320:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 51641031 | 51646345 | 51641031 | ID=Msa0027320;Name=Msa0027320 |
| chr1_1 | mRNA | 51641031 | 51646345 | 51641031 | ID=Msa0027320-mRNA-1;Parent=Msa0027320;Name=Msa0027320-mRNA-1;_AED=0.08;_eAED=0.08;_QI=154|1|1|1|1|1|12|476|421 |
| chr1_1 | exon | 51641031 | 51641286 | 51641031 | ID=Msa0027320-mRNA-1:exon:15118;Parent=Msa0027320-mRNA-1 |
| chr1_1 | exon | 51641418 | 51641528 | 51641418 | ID=Msa0027320-mRNA-1:exon:15119;Parent=Msa0027320-mRNA-1 |
| chr1_1 | exon | 51641887 | 51641998 | 51641887 | ID=Msa0027320-mRNA-1:exon:15120;Parent=Msa0027320-mRNA-1 |
| chr1_1 | exon | 51642233 | 51642297 | 51642233 | ID=Msa0027320-mRNA-1:exon:15121;Parent=Msa0027320-mRNA-1 |
| chr1_1 | exon | 51643057 | 51643134 | 51643057 | ID=Msa0027320-mRNA-1:exon:15122;Parent=Msa0027320-mRNA-1 |
| chr1_1 | exon | 51643305 | 51643379 | 51643305 | ID=Msa0027320-mRNA-1:exon:15123;Parent=Msa0027320-mRNA-1 |
| chr1_1 | exon | 51643454 | 51643606 | 51643454 | ID=Msa0027320-mRNA-1:exon:15124;Parent=Msa0027320-mRNA-1 |
| chr1_1 | exon | 51643697 | 51643831 | 51643697 | ID=Msa0027320-mRNA-1:exon:15125;Parent=Msa0027320-mRNA-1 |
| chr1_1 | exon | 51644714 | 51644878 | 51644714 | ID=Msa0027320-mRNA-1:exon:15126;Parent=Msa0027320-mRNA-1 |
| chr1_1 | exon | 51645090 | 51645212 | 51645090 | ID=Msa0027320-mRNA-1:exon:15127;Parent=Msa0027320-mRNA-1 |
| chr1_1 | exon | 51645609 | 51645680 | 51645609 | ID=Msa0027320-mRNA-1:exon:15128;Parent=Msa0027320-mRNA-1 |
| chr1_1 | exon | 51645795 | 51646345 | 51645795 | ID=Msa0027320-mRNA-1:exon:15129;Parent=Msa0027320-mRNA-1 |
| chr1_1 | five_prime_UTR | 51641031 | 51641184 | 51641031 | ID=Msa0027320-mRNA-1:five_prime_utr;Parent=Msa0027320-mRNA-1 |
| chr1_1 | CDS | 51641185 | 51641286 | 51641185 | ID=Msa0027320-mRNA-1:cds;Parent=Msa0027320-mRNA-1 |
| chr1_1 | CDS | 51641418 | 51641528 | 51641418 | ID=Msa0027320-mRNA-1:cds;Parent=Msa0027320-mRNA-1 |
| chr1_1 | CDS | 51641887 | 51641998 | 51641887 | ID=Msa0027320-mRNA-1:cds;Parent=Msa0027320-mRNA-1 |
| chr1_1 | CDS | 51642233 | 51642297 | 51642233 | ID=Msa0027320-mRNA-1:cds;Parent=Msa0027320-mRNA-1 |
| chr1_1 | CDS | 51643057 | 51643134 | 51643057 | ID=Msa0027320-mRNA-1:cds;Parent=Msa0027320-mRNA-1 |
| chr1_1 | CDS | 51643305 | 51643379 | 51643305 | ID=Msa0027320-mRNA-1:cds;Parent=Msa0027320-mRNA-1 |
| chr1_1 | CDS | 51643454 | 51643606 | 51643454 | ID=Msa0027320-mRNA-1:cds;Parent=Msa0027320-mRNA-1 |
| chr1_1 | CDS | 51643697 | 51643831 | 51643697 | ID=Msa0027320-mRNA-1:cds;Parent=Msa0027320-mRNA-1 |
| chr1_1 | CDS | 51644714 | 51644878 | 51644714 | ID=Msa0027320-mRNA-1:cds;Parent=Msa0027320-mRNA-1 |
| chr1_1 | CDS | 51645090 | 51645212 | 51645090 | ID=Msa0027320-mRNA-1:cds;Parent=Msa0027320-mRNA-1 |
| chr1_1 | CDS | 51645609 | 51645680 | 51645609 | ID=Msa0027320-mRNA-1:cds;Parent=Msa0027320-mRNA-1 |
| chr1_1 | CDS | 51645795 | 51645869 | 51645795 | ID=Msa0027320-mRNA-1:cds;Parent=Msa0027320-mRNA-1 |
| chr1_1 | three_prime_UTR | 51645870 | 51646345 | 51645870 | ID=Msa0027320-mRNA-1:three_prime_utr;Parent=Msa0027320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
