Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0559270 | APD76301.1 | 99.810 | 525 | 1 | 0 | 1 | 525 | 1 | 525 | 0.0 | 1074 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0559270 | sp|B7TWW5|SQE2_PANGI | 76.923 | 533 | 108 | 7 | 4 | 524 | 12 | 541 | 0.0 | 840 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0559270 | A0A1J0REM1 | 99.810 | 525 | 1 | 0 | 1 | 525 | 1 | 525 | 0.0 | 1074 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022230 | Msa0559270 | 0.810126 | 1.345573e-50 | -8.615850e-47 |
| Msa0091300 | Msa0559270 | 0.817567 | 3.083660e-52 | -8.615850e-47 |
| Msa0123310 | Msa0559270 | 0.815047 | 1.129462e-51 | -8.615850e-47 |
| Msa0167800 | Msa0559270 | 0.802447 | 5.586505e-49 | -8.615850e-47 |
| Msa0172110 | Msa0559270 | 0.802947 | 4.405155e-49 | -8.615850e-47 |
| Msa0412480 | Msa0559270 | 0.819021 | 1.444982e-52 | -8.615850e-47 |
| Msa0456950 | Msa0559270 | 0.821729 | 3.458090e-53 | -8.615850e-47 |
| Msa0506090 | Msa0559270 | 0.808197 | 3.485650e-50 | -8.615850e-47 |
| Msa0539570 | Msa0559270 | 0.832187 | 1.090472e-55 | -8.615850e-47 |
| Msa0559270 | Msa0559280 | 0.823296 | 1.495324e-53 | -8.615850e-47 |
| Msa0559270 | Msa0561750 | 0.838888 | 2.199720e-57 | -8.615850e-47 |
| Msa0559270 | Msa0568260 | 0.832766 | 7.836155e-56 | -8.615850e-47 |
| Msa0559270 | Msa0570310 | 0.806262 | 8.960314e-50 | -8.615850e-47 |
| Msa0559270 | Msa0654570 | 0.815984 | 6.985126e-52 | -8.615850e-47 |
| Msa0559270 | Msa0655080 | 0.819834 | 9.430172e-53 | -8.615850e-47 |
| Msa0559270 | Msa0655150 | 0.805538 | 1.271822e-49 | -8.615850e-47 |
| Msa0559270 | Msa0742690 | 0.800620 | 1.323199e-48 | -8.615850e-47 |
| Msa0559270 | Msa0752490 | 0.819172 | 1.335421e-52 | -8.615850e-47 |
| Msa0559270 | Msa0779830 | 0.818780 | 1.639893e-52 | -8.615850e-47 |
| Msa0559270 | Msa0812020 | 0.803698 | 3.078734e-49 | -8.615850e-47 |
| Msa0559270 | Msa0906100 | 0.802004 | 6.890019e-49 | -8.615850e-47 |
| Msa0559270 | Msa0906180 | 0.834355 | 3.145247e-56 | -8.615850e-47 |
| Msa0559270 | Msa0938150 | 0.804308 | 2.299474e-49 | -8.615850e-47 |
| Msa0559270 | Msa0938190 | 0.812405 | 4.309604e-51 | -8.615850e-47 |
| Msa0559270 | Msa1260520 | 0.814942 | 1.191468e-51 | -8.615850e-47 |
| Msa0559270 | Msa1360070 | 0.802398 | 5.716521e-49 | -8.615850e-47 |
| Msa0559270 | Msa1381870 | 0.814574 | 1.437363e-51 | -8.615850e-47 |
| Msa0559270 | Msa1412800 | 0.813695 | 2.247055e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0559270 | MtrunA17_Chr4g0049291 | 98.286 | 525 | 9 | 0 | 1 | 525 | 1 | 525 | 0.0 | 1058 |
| Msa0559270 | MtrunA17_Chr3g0135201 | 78.613 | 519 | 98 | 3 | 9 | 523 | 8 | 517 | 0.0 | 833 |
| Msa0559270 | MtrunA17_Chr1g0152061 | 78.585 | 523 | 108 | 4 | 5 | 525 | 4 | 524 | 0.0 | 807 |
| Msa0559270 | MtrunA17_Chr6g0463581 | 77.387 | 199 | 45 | 0 | 327 | 525 | 1 | 199 | 1.15e-107 | 319 |
| Msa0559270 | MtrunA17_Chr6g0463781 | 79.459 | 185 | 38 | 0 | 307 | 491 | 21 | 205 | 3.90e-100 | 301 |
| Msa0559270 | MtrunA17_Chr6g0463601 | 76.882 | 186 | 31 | 4 | 1 | 179 | 1 | 181 | 1.74e-90 | 275 |
| Msa0559270 | MtrunA17_Chr6g0463751 | 85.859 | 99 | 14 | 0 | 81 | 179 | 38 | 136 | 1.09e-57 | 188 |
| Msa0559270 | MtrunA17_Chr5g0411591 | 92.857 | 84 | 6 | 0 | 400 | 483 | 35 | 118 | 1.79e-47 | 161 |
| Msa0559270 | MtrunA17_Chr7g0240231 | 86.905 | 84 | 11 | 0 | 398 | 481 | 33 | 116 | 1.14e-42 | 147 |
| Msa0559270 | MtrunA17_Chr6g0463771 | 69.072 | 97 | 30 | 0 | 232 | 328 | 11 | 107 | 8.37e-41 | 144 |
| Msa0559270 | MtrunA17_Chr6g0463591 | 82.895 | 76 | 13 | 0 | 232 | 307 | 5 | 80 | 2.26e-39 | 138 |
| Msa0559270 | MtrunA17_Chr6g0463761 | 86.207 | 58 | 8 | 0 | 176 | 233 | 24 | 81 | 2.06e-28 | 108 |
| Msa0559270 | MtrunA17_Chr6g0463741 | 63.218 | 87 | 20 | 4 | 1 | 80 | 1 | 82 | 3.62e-23 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0559270 | AT1G58440.1 | 77.822 | 505 | 105 | 4 | 21 | 523 | 24 | 523 | 0.0 | 805 |
| Msa0559270 | AT4G37760.1 | 74.563 | 515 | 120 | 2 | 6 | 520 | 11 | 514 | 0.0 | 768 |
| Msa0559270 | AT2G22830.1 | 75.202 | 496 | 116 | 3 | 32 | 523 | 93 | 585 | 0.0 | 750 |
| Msa0559270 | AT5G24150.1 | 51.540 | 487 | 232 | 3 | 37 | 520 | 23 | 508 | 1.83e-180 | 517 |
| Msa0559270 | AT5G24160.1 | 49.390 | 492 | 239 | 5 | 33 | 520 | 24 | 509 | 4.04e-172 | 496 |
| Msa0559270 | AT5G24150.2 | 51.502 | 466 | 222 | 3 | 37 | 499 | 23 | 487 | 5.26e-171 | 492 |
| Msa0559270 | AT5G24140.1 | 45.793 | 511 | 260 | 5 | 15 | 520 | 12 | 510 | 3.03e-161 | 468 |
| Msa0559270 | AT5G24160.3 | 48.730 | 433 | 217 | 4 | 92 | 520 | 1 | 432 | 3.72e-150 | 437 |
| Msa0559270 | AT5G24160.2 | 50.270 | 370 | 174 | 5 | 33 | 398 | 24 | 387 | 6.95e-128 | 379 |
| Msa0559270 | AT5G24155.2 | 68.421 | 57 | 18 | 0 | 61 | 117 | 49 | 105 | 1.61e-20 | 87.4 |
| Msa0559270 | AT5G24155.1 | 68.421 | 57 | 18 | 0 | 61 | 117 | 49 | 105 | 3.06e-20 | 87.0 |
| Msa0559270 | AT5G24155.3 | 68.421 | 57 | 18 | 0 | 61 | 117 | 49 | 105 | 3.78e-20 | 86.7 |
Find 150 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCAATTAGTGGGCCATATT+TGG | 0.166717 | 4_1:+58472281 | None:intergenic |
| CGAATCTCGGTACTACTTAT+AGG | 0.199019 | 4_1:+58473936 | None:intergenic |
| ACATCGTTACTTGAAGAAAA+TGG | 0.216396 | 4_1:-58474288 | Msa0559270:CDS |
| GTCATTCCTCCTCCTGTTAA+AGG | 0.228288 | 4_1:+58473480 | None:intergenic |
| ACTTATAGGGTAAAACAAAA+TGG | 0.229140 | 4_1:+58473950 | None:intergenic |
| TGTCTTCAAAATGTTCAATT+TGG | 0.231666 | 4_1:-58472043 | Msa0559270:three_prime_UTR |
| ATAAAAGAAGCTTGCAGTTC+TGG | 0.264689 | 4_1:+58473615 | None:intergenic |
| GAAGTGTGAAGATTTGAAAA+AGG | 0.270242 | 4_1:+58471909 | None:intergenic |
| ATTTGCACCATGCGTTTCTT+AGG | 0.282850 | 4_1:+58472304 | None:intergenic |
| TAATATGCTGGCACACTTGC+TGG | 0.295840 | 4_1:+58472354 | None:intergenic |
| GATGCAGGCATGCTTCTATT+TGG | 0.299001 | 4_1:+58473558 | None:intergenic |
| GTTTGGCTATGCACTTTATA+AGG | 0.306005 | 4_1:-58474552 | Msa0559270:CDS |
| AATATGCGTCATCCTTTAAC+AGG | 0.308584 | 4_1:-58473492 | Msa0559270:CDS |
| GCAAAGACATCATCAGAAAA+TGG | 0.314469 | 4_1:-58475630 | Msa0559270:CDS |
| TTTATTGCAGCAGTTGATAA+AGG | 0.324523 | 4_1:-58473597 | Msa0559270:CDS |
| AGGGATTCTGGCTTGTAGTT+TGG | 0.330230 | 4_1:-58475733 | Msa0559270:CDS |
| GCTCCGATCCACATTCGTTT+TGG | 0.330287 | 4_1:+58472709 | None:intergenic |
| GTATATTCTAGGAGGGATTC+TGG | 0.331402 | 4_1:-58475745 | Msa0559270:CDS |
| AAAACAACCATCACATACTA+TGG | 0.340829 | 4_1:+58474200 | None:intergenic |
| CACTCCTTCAGCCTTGATAA+TGG | 0.342933 | 4_1:+58472392 | None:intergenic |
| CAATCAAATCTTAGGTACTA+TGG | 0.346233 | 4_1:-58471936 | Msa0559270:three_prime_UTR |
| GCATGGTGCAAATCCAAATA+TGG | 0.347910 | 4_1:-58472294 | Msa0559270:three_prime_UTR |
| ACTCCTTCAGCCTTGATAAT+GGG | 0.353925 | 4_1:+58472393 | None:intergenic |
| AAGTTTGACTCGGATGTATC+TGG | 0.355255 | 4_1:-58474494 | Msa0559270:CDS |
| AACCTAACCAATCAAATCTT+AGG | 0.360628 | 4_1:-58471944 | Msa0559270:three_prime_UTR |
| ATGGATTATCAGTATATTCT+AGG | 0.363275 | 4_1:-58475756 | Msa0559270:CDS |
| TTTGGAGAAAAGAAGAAAAC+AGG | 0.363799 | 4_1:-58475687 | Msa0559270:CDS |
| CATAGTACCTAAGATTTGAT+TGG | 0.366565 | 4_1:+58471937 | None:intergenic |
| AGTCCACCACACATCCGTTT+TGG | 0.367037 | 4_1:+58472260 | None:intergenic |
| AGATATATGATACTAAGTTT+TGG | 0.370517 | 4_1:+58471830 | None:intergenic |
| TTCTTCGCAGTGGCTGTATA+CGG | 0.371187 | 4_1:-58472763 | Msa0559270:CDS |
| TACTTAACTCATAAGTATAT+AGG | 0.371294 | 4_1:+58475901 | None:intergenic |
| GAATCTCGGTACTACTTATA+GGG | 0.374713 | 4_1:+58473937 | None:intergenic |
| CTTAGGACATGTTAATGAAC+AGG | 0.376921 | 4_1:+58472321 | None:intergenic |
| ACTTAACTCATAAGTATATA+GGG | 0.382329 | 4_1:+58475902 | None:intergenic |
| TATTTGAAGTTACTTGAGTT+GGG | 0.387474 | 4_1:-58474849 | Msa0559270:CDS |
| ATTGTAGGTGCCGGAGTTGC+TGG | 0.396463 | 4_1:-58475567 | Msa0559270:CDS |
| AGTAACTACATACAATTAGT+TGG | 0.397579 | 4_1:+58472114 | None:intergenic |
| TCTGACACGCAATCAACTTA+AGG | 0.397975 | 4_1:-58472164 | Msa0559270:three_prime_UTR |
| CTATTTGAAGTTACTTGAGT+TGG | 0.409758 | 4_1:-58474850 | Msa0559270:CDS |
| ATGACATTTCAGGGTGCATC+AGG | 0.413074 | 4_1:-58472426 | Msa0559270:intron |
| GTGTTTGTTATGTATAGTTT+TGG | 0.413692 | 4_1:-58475705 | Msa0559270:CDS |
| TAGTACCGAGATTCGTTGTT+TGG | 0.413764 | 4_1:-58473928 | Msa0559270:CDS |
| TTCCAAGGGATAAGACAGTT+TGG | 0.414928 | 4_1:+58474517 | None:intergenic |
| ATCTCCCATCAGAAGAGCTC+CGG | 0.419343 | 4_1:+58473521 | None:intergenic |
| AATTCACCCACAATTCTATC+AGG | 0.425034 | 4_1:+58474888 | None:intergenic |
| GGCTATGCACTTTATAAGGA+TGG | 0.431044 | 4_1:-58474548 | Msa0559270:CDS |
| ATTGATGCTCAAAGAGTGTT+TGG | 0.434501 | 4_1:-58474569 | Msa0559270:CDS |
| GTGATTCAAAATGAAGTTGT+AGG | 0.442580 | 4_1:+58471782 | None:intergenic |
| TTACTTGAGTTGGGTCTTGA+GGG | 0.443470 | 4_1:-58474840 | Msa0559270:intron |
| AAATCATGGACATGTTATCT+TGG | 0.449608 | 4_1:-58473985 | Msa0559270:CDS |
| TTCTCTTGGTAACGGCGAAA+TGG | 0.452517 | 4_1:-58473877 | Msa0559270:CDS |
| GAAAACAGGTTCAAGTTCAA+TGG | 0.452744 | 4_1:-58475673 | Msa0559270:CDS |
| CTGACACGCAATCAACTTAA+GGG | 0.457171 | 4_1:-58472163 | Msa0559270:three_prime_UTR |
| CATACAAAGAATGCGAGAAA+AGG | 0.459472 | 4_1:-58474447 | Msa0559270:CDS |
| TACCAAACTGTCTTATCCCT+TGG | 0.460598 | 4_1:-58474519 | Msa0559270:CDS |
| CGGCGCATTTCAATGCTAGC+TGG | 0.465823 | 4_1:+58472886 | None:intergenic |
| ATTTGTTCACAAGAGGTTGT+TGG | 0.466336 | 4_1:-58475606 | Msa0559270:CDS |
| CTTATAGGGTAAAACAAAAT+GGG | 0.467121 | 4_1:+58473951 | None:intergenic |
| CTTGGAGGTGTTTGCTCAGA+CGG | 0.468969 | 4_1:-58472841 | Msa0559270:CDS |
| ATTTCAATGCTAGCTGGATC+AGG | 0.470527 | 4_1:+58472892 | None:intergenic |
| ACCGAGCCTGATAGAATTGT+GGG | 0.474299 | 4_1:-58474894 | Msa0559270:CDS |
| GAAACAGATATCATCATTGT+AGG | 0.477088 | 4_1:-58475582 | Msa0559270:CDS |
| GAAAACTGTGGTAGCTCCCC+AGG | 0.478112 | 4_1:-58473844 | Msa0559270:intron |
| TACCTAAGATTTGATTGGTT+AGG | 0.478658 | 4_1:+58471942 | None:intergenic |
| AGACCGGAGAGTAGAGCTAT+TGG | 0.479940 | 4_1:+58472817 | None:intergenic |
| CTACTACTTTACATCACATA+AGG | 0.483780 | 4_1:-58471863 | Msa0559270:three_prime_UTR |
| GTTACTTGAGTTGGGTCTTG+AGG | 0.485508 | 4_1:-58474841 | Msa0559270:CDS |
| TTTGATTATTTGAGCCTTGG+AGG | 0.486117 | 4_1:-58472856 | Msa0559270:CDS |
| TCTCCCATCAGAAGAGCTCC+GGG | 0.491647 | 4_1:+58473522 | None:intergenic |
| GTAACTACATACAATTAGTT+GGG | 0.496593 | 4_1:+58472115 | None:intergenic |
| TGTTTGGTCGATGTGCCTAC+TGG | 0.501821 | 4_1:-58473912 | Msa0559270:CDS |
| TCAATGGATGTGAAAAGTAA+TGG | 0.505232 | 4_1:-58475657 | Msa0559270:CDS |
| GCTGCTCTTGCTTATACACT+TGG | 0.506736 | 4_1:-58475543 | Msa0559270:CDS |
| AAATGTAAAACCAAGCTCAA+TGG | 0.510665 | 4_1:+58472784 | None:intergenic |
| TGGCCCACTAATTGCCAAAA+CGG | 0.510864 | 4_1:-58472274 | Msa0559270:three_prime_UTR |
| GAATCCGCGTCCATTGAGCT+TGG | 0.512697 | 4_1:-58472794 | Msa0559270:CDS |
| GCTATGCACTTTATAAGGAT+GGG | 0.512908 | 4_1:-58474547 | Msa0559270:CDS |
| AATCTTCCACATGCAAATCA+TGG | 0.513553 | 4_1:-58473999 | Msa0559270:CDS |
| TCTACAATAAACACATTAGC+AGG | 0.520455 | 4_1:-58472943 | Msa0559270:CDS |
| AAGAGCAGCACCAGCAACTC+CGG | 0.522278 | 4_1:+58475557 | None:intergenic |
| GAAGAAAATGGAACTATCAA+AGG | 0.527154 | 4_1:-58474276 | Msa0559270:CDS |
| GGGGTGGGATAAGGTGATGC+AGG | 0.527706 | 4_1:+58473543 | None:intergenic |
| CGTCATCCTTTAACAGGAGG+AGG | 0.532176 | 4_1:-58473486 | Msa0559270:CDS |
| GCGTGTCAGAAGGCCATTGT+GGG | 0.532656 | 4_1:+58472177 | None:intergenic |
| GATATCATCATTGTAGGTGC+CGG | 0.533101 | 4_1:-58475576 | Msa0559270:CDS |
| CTCCTTCAGCCTTGATAATG+GGG | 0.533319 | 4_1:+58472394 | None:intergenic |
| TCCCTTGGAAAAGTTTGACT+CGG | 0.534269 | 4_1:-58474504 | Msa0559270:CDS |
| GCGTTCTCTTTGTAACCCTA+AGG | 0.534721 | 4_1:-58474166 | Msa0559270:intron |
| TAAAGGATGACGCATATTGA+AGG | 0.537263 | 4_1:+58473497 | None:intergenic |
| TTCCCCATTATCAAGGCTGA+AGG | 0.539446 | 4_1:-58472396 | Msa0559270:CDS |
| CTTGTTTGTTGCAGGATGGA+CGG | 0.540600 | 4_1:-58474944 | Msa0559270:intron |
| ACCCACAATTCTATCAGGCT+CGG | 0.542032 | 4_1:+58474893 | None:intergenic |
| AACCGAGCCTGATAGAATTG+TGG | 0.542650 | 4_1:-58474895 | Msa0559270:CDS |
| GTGTTTATTGTAGATGCCAC+TGG | 0.545278 | 4_1:+58472952 | None:intergenic |
| GCAGTGGCTGTATACGGTGT+TGG | 0.546963 | 4_1:-58472757 | Msa0559270:CDS |
| AAATGGAATTTGTTCACAAG+AGG | 0.548076 | 4_1:-58475613 | Msa0559270:CDS |
| TTCCTTCTCCAAAACGAATG+TGG | 0.549297 | 4_1:-58472717 | Msa0559270:CDS |
| ATCGACCAAACAACGAATCT+CGG | 0.549356 | 4_1:+58473923 | None:intergenic |
| TCAAATAATCAAAACATGCT+CGG | 0.551515 | 4_1:+58472866 | None:intergenic |
| CCTCTCACCATAGTATGTGA+TGG | 0.552875 | 4_1:-58474207 | Msa0559270:CDS |
| TTGAATTATTGCAGATTGTG+TGG | 0.554505 | 4_1:-58474597 | Msa0559270:intron |
| GCATCACCTTATCCCACCCC+CGG | 0.555456 | 4_1:-58473540 | Msa0559270:CDS |
| TAAGTTGATTGCGTGTCAGA+AGG | 0.555667 | 4_1:+58472167 | None:intergenic |
| ATTTCCTTAATTAGAAGGGA+AGG | 0.558441 | 4_1:-58475974 | None:intergenic |
| AATCATGGACATGTTATCTT+GGG | 0.559662 | 4_1:-58473984 | Msa0559270:CDS |
| AAATTACCTTCTCTTGGTAA+CGG | 0.560735 | 4_1:-58473885 | Msa0559270:CDS |
| GGAGGCATTCTGTAATATGC+TGG | 0.562084 | 4_1:+58472342 | None:intergenic |
| ATGAAAGAACATATTTGAAG+AGG | 0.563464 | 4_1:+58471747 | None:intergenic |
| CAATGGACGCGGATTCAGAC+CGG | 0.575137 | 4_1:+58472801 | None:intergenic |
| ACAAAGAGAACGCCTCAAGT+TGG | 0.580768 | 4_1:+58474176 | None:intergenic |
| TCTTGCTTATACACTTGGAA+AGG | 0.583251 | 4_1:-58475538 | Msa0559270:intron |
| AATCAATCCAACAAAATGAG+AGG | 0.583831 | 4_1:+58474034 | None:intergenic |
| AAAACCAAGCTCAATGGACG+CGG | 0.590106 | 4_1:+58472790 | None:intergenic |
| GGGTAAAACAAAATGGGTGA+AGG | 0.590534 | 4_1:+58473957 | None:intergenic |
| TGGTCAAGAGTTCACAGCAA+AGG | 0.591363 | 4_1:-58474232 | Msa0559270:CDS |
| ATATACTACTTACCTTGCGT+AGG | 0.594095 | 4_1:+58473355 | None:intergenic |
| ATCAATCCAACAAAATGAGA+GGG | 0.594183 | 4_1:+58474035 | None:intergenic |
| TCCCATCAGAAGAGCTCCGG+GGG | 0.596245 | 4_1:+58473524 | None:intergenic |
| AAAGAAGCTTGCAGTTCTGG+AGG | 0.598501 | 4_1:+58473618 | None:intergenic |
| AAATCAAATTTAACCCACAA+TGG | 0.601600 | 4_1:-58472190 | Msa0559270:three_prime_UTR |
| ATTTCGCCGTTACCAAGAGA+AGG | 0.601851 | 4_1:+58473879 | None:intergenic |
| CGTCTGAGCAAACACCTCCA+AGG | 0.602662 | 4_1:+58472842 | None:intergenic |
| GGCAAATTATTTGAAAACTG+TGG | 0.606606 | 4_1:-58473856 | Msa0559270:CDS |
| TATACTACTTACCTTGCGTA+GGG | 0.606767 | 4_1:+58473356 | None:intergenic |
| ATTATCAGTATATTCTAGGA+GGG | 0.608177 | 4_1:-58475752 | Msa0559270:CDS |
| TGCGTGTCAGAAGGCCATTG+TGG | 0.617757 | 4_1:+58472176 | None:intergenic |
| GATTATCAGTATATTCTAGG+AGG | 0.622192 | 4_1:-58475753 | Msa0559270:CDS |
| TGCAGTGTTAAATTAGAACA+AGG | 0.622507 | 4_1:-58474318 | Msa0559270:intron |
| TCTCCAAAACGAATGTGGAT+CGG | 0.626029 | 4_1:-58472712 | Msa0559270:CDS |
| GGACCAATAGCTCTACTCTC+CGG | 0.637723 | 4_1:-58472820 | Msa0559270:CDS |
| GAGAAGGAAACGGTATCAAG+AGG | 0.638267 | 4_1:+58472731 | None:intergenic |
| CCATCACATACTATGGTGAG+AGG | 0.648098 | 4_1:+58474207 | None:intergenic |
| AGGACATGTTAATGAACAGG+AGG | 0.653771 | 4_1:+58472324 | None:intergenic |
| CAAAAGAGTTGAAAATATAG+CGG | 0.657312 | 4_1:+58471714 | None:intergenic |
| ATGCGTCATCCTTTAACAGG+AGG | 0.657566 | 4_1:-58473489 | Msa0559270:CDS |
| GCTACAGTTCAAGCTCTCTG+AGG | 0.658862 | 4_1:-58471971 | Msa0559270:three_prime_UTR |
| TTGCCAAAACGGATGTGTGG+TGG | 0.660636 | 4_1:-58472263 | Msa0559270:three_prime_UTR |
| GTCGTTCTACACCCTACGCA+AGG | 0.662169 | 4_1:-58473367 | Msa0559270:intron |
| AAGGAAACGGTATCAAGAGG+CGG | 0.664438 | 4_1:+58472734 | None:intergenic |
| AGTAACTTCAAATAGCCACC+AGG | 0.665041 | 4_1:+58474858 | None:intergenic |
| GTAGGGTGTAGAACGACTCA+AGG | 0.681615 | 4_1:+58473373 | None:intergenic |
| ACATGTCCATGATTTGCATG+TGG | 0.682646 | 4_1:+58473993 | None:intergenic |
| GTGGGTGAATTGCTACAACC+TGG | 0.687984 | 4_1:-58474876 | Msa0559270:CDS |
| TAATTGCCAAAACGGATGTG+TGG | 0.708333 | 4_1:-58472266 | Msa0559270:three_prime_UTR |
| GCATCATGCAGATTACGCAG+AGG | 0.710857 | 4_1:+58473414 | None:intergenic |
| CTCCCATCAGAAGAGCTCCG+GGG | 0.711011 | 4_1:+58473523 | None:intergenic |
| AACATGTCCTAAGAAACGCA+TGG | 0.713703 | 4_1:-58472311 | Msa0559270:three_prime_UTR |
| GGTGAATTGCTACAACCTGG+TGG | 0.730275 | 4_1:-58474873 | Msa0559270:CDS |
| AACAGGAGGAGGAATGACTG+TGG | 0.731980 | 4_1:-58473475 | Msa0559270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAAAAATCTTTGAGA+TGG | - | chr4_1:58471762-58471781 | Msa0559270:three_prime_UTR | 15.0% |
| !! | ACAAATAAATTTGTATACTT+CGG | + | chr4_1:58473127-58473146 | None:intergenic | 15.0% |
| !! | TAAATCAAGATAAATAACAT+TGG | + | chr4_1:58473419-58473438 | None:intergenic | 15.0% |
| !! | TTATAATTTGACAACAATTT+AGG | + | chr4_1:58473808-58473827 | None:intergenic | 15.0% |
| !! | TAAACATATATTTGTTTGTT+TGG | - | chr4_1:58474895-58474914 | Msa0559270:CDS | 15.0% |
| !! | ACTTAACTCATAAGTATATA+GGG | + | chr4_1:58471638-58471657 | None:intergenic | 20.0% |
| !! | TACTTAACTCATAAGTATAT+AGG | + | chr4_1:58471639-58471658 | None:intergenic | 20.0% |
| !!! | TCTTTCTTTACTTTTTATAG+CGG | + | chr4_1:58471694-58471713 | None:intergenic | 20.0% |
| !! | GCATAAACTCAAAAAATAAA+AGG | + | chr4_1:58472040-58472059 | None:intergenic | 20.0% |
| !! | TTAAATTGATCATCTAAACA+AGG | + | chr4_1:58472194-58472213 | None:intergenic | 20.0% |
| !! | ATATTTAACCCTTTACTATA+TGG | - | chr4_1:58472811-58472830 | Msa0559270:CDS | 20.0% |
| !! | ATAATGTTCCATATAGTAAA+GGG | + | chr4_1:58472822-58472841 | None:intergenic | 20.0% |
| !! | TTGAAGTATATATGTTTCTT+AGG | - | chr4_1:58472849-58472868 | Msa0559270:CDS | 20.0% |
| !!! | TCTCAATTTTTTTTACCTTA+GGG | + | chr4_1:58473389-58473408 | None:intergenic | 20.0% |
| !!! | TTCTCAATTTTTTTTACCTT+AGG | + | chr4_1:58473390-58473409 | None:intergenic | 20.0% |
| !!! | AGGTAGAATTTTCATTATTT+TGG | + | chr4_1:58473721-58473740 | None:intergenic | 20.0% |
| !!! | TAAGTTTTTTCGTTCTATTT+TGG | + | chr4_1:58474476-58474495 | None:intergenic | 20.0% |
| !! | AAATAGAACGAAAAAACTTA+AGG | - | chr4_1:58474476-58474495 | Msa0559270:CDS | 20.0% |
| !! | AATAGAACGAAAAAACTTAA+GGG | - | chr4_1:58474477-58474496 | Msa0559270:CDS | 20.0% |
| !! | AATATATGTTTAAGCACATA+GGG | + | chr4_1:58474887-58474906 | None:intergenic | 20.0% |
| !! | AAATATATGTTTAAGCACAT+AGG | + | chr4_1:58474888-58474907 | None:intergenic | 20.0% |
| !!! | CCTTTTTTCTTATATTAAGA+AGG | + | chr4_1:58475316-58475335 | None:intergenic | 20.0% |
| !! | CCTTCTTAATATAAGAAAAA+AGG | - | chr4_1:58475313-58475332 | Msa0559270:intron | 20.0% |
| !!! | AGATATATGATACTAAGTTT+TGG | + | chr4_1:58475710-58475729 | None:intergenic | 20.0% |
| !! | ATGGATTATCAGTATATTCT+AGG | - | chr4_1:58471781-58471800 | Msa0559270:three_prime_UTR | 25.0% |
| !! | ATTATCAGTATATTCTAGGA+GGG | - | chr4_1:58471785-58471804 | Msa0559270:three_prime_UTR | 25.0% |
| !!! | GTGTTTGTTATGTATAGTTT+TGG | - | chr4_1:58471832-58471851 | Msa0559270:three_prime_UTR | 25.0% |
| ! | TATGCATTTCATCAATATGA+TGG | - | chr4_1:58472055-58472074 | Msa0559270:three_prime_UTR | 25.0% |
| ! | ATATGTTCCAATGAAAAGAT+TGG | - | chr4_1:58472139-58472158 | Msa0559270:three_prime_UTR | 25.0% |
| ! | GTTGTTAAGACTAATATCTT+AGG | - | chr4_1:58472168-58472187 | Msa0559270:three_prime_UTR | 25.0% |
| ! | ATTGCAAGAAAATATGTGTT+GGG | - | chr4_1:58472517-58472536 | Msa0559270:intron | 25.0% |
| ! | ATGTTATGCAAAAACTAACA+AGG | + | chr4_1:58472547-58472566 | None:intergenic | 25.0% |
| !! | TATTTGAAGTTACTTGAGTT+GGG | - | chr4_1:58472688-58472707 | Msa0559270:intron | 25.0% |
| !!! | TGAAAATTCGTGAGTTTTAT+AGG | - | chr4_1:58472780-58472799 | Msa0559270:CDS | 25.0% |
| ! | CATAATGTTCCATATAGTAA+AGG | + | chr4_1:58472823-58472842 | None:intergenic | 25.0% |
| ! | TAGATCTAATTTATTTGTGC+AGG | - | chr4_1:58473471-58473490 | Msa0559270:CDS | 25.0% |
| !!! | TCATTTTGTTGGATTGATTT+TGG | - | chr4_1:58473507-58473526 | Msa0559270:CDS | 25.0% |
| ! | CTTATAGGGTAAAACAAAAT+GGG | + | chr4_1:58473589-58473608 | None:intergenic | 25.0% |
| ! | ACTTATAGGGTAAAACAAAA+TGG | + | chr4_1:58473590-58473609 | None:intergenic | 25.0% |
| !!! | TTTTCATTATTTTGGTACCT+GGG | + | chr4_1:58473713-58473732 | None:intergenic | 25.0% |
| !!! | ATTTTCATTATTTTGGTACC+TGG | + | chr4_1:58473714-58473733 | None:intergenic | 25.0% |
| ! | ATTGAGTGAATTATATGTTC+AGG | - | chr4_1:58473894-58473913 | Msa0559270:CDS | 25.0% |
| ! | TACTTTCTGTAATGCTAAAA+TGG | - | chr4_1:58474292-58474311 | Msa0559270:CDS | 25.0% |
| ! | TCAAATAATCAAAACATGCT+CGG | + | chr4_1:58474674-58474693 | None:intergenic | 25.0% |
| !! | TTTGAAATTGAAACATCCTA+AGG | + | chr4_1:58474988-58475007 | None:intergenic | 25.0% |
| ! | CATCAGATACTAATAGTTAT+TGG | - | chr4_1:58475039-58475058 | Msa0559270:intron | 25.0% |
| !! | TTAATTTTCCATGACATTTC+AGG | - | chr4_1:58475101-58475120 | Msa0559270:intron | 25.0% |
| !! | TAATTTTCCATGACATTTCA+GGG | - | chr4_1:58475102-58475121 | Msa0559270:intron | 25.0% |
| ! | AAATCAAATTTAACCCACAA+TGG | - | chr4_1:58475347-58475366 | Msa0559270:intron | 25.0% |
| !! | TAGTTGGGAAAACATTTTTA+AGG | + | chr4_1:58475410-58475429 | None:intergenic | 25.0% |
| ! | GTAACTACATACAATTAGTT+GGG | + | chr4_1:58475425-58475444 | None:intergenic | 25.0% |
| ! | AGTAACTACATACAATTAGT+TGG | + | chr4_1:58475426-58475445 | None:intergenic | 25.0% |
| ! | TGTCTTCAAAATGTTCAATT+TGG | - | chr4_1:58475494-58475513 | Msa0559270:intron | 25.0% |
| ! | AAGTGTGAAGATTTGAAAAA+GGG | + | chr4_1:58475630-58475649 | None:intergenic | 25.0% |
| !! | TACAACTTCATTTTGAATCA+CGG | - | chr4_1:58475757-58475776 | Msa0559270:CDS | 25.0% |
| ! | ATGAAAGAACATATTTGAAG+AGG | + | chr4_1:58475793-58475812 | None:intergenic | 25.0% |
| ! | CAAAAGAGTTGAAAATATAG+CGG | + | chr4_1:58475826-58475845 | None:intergenic | 25.0% |
| ! | AATGATACCAAATGAAAGAA+TGG | + | chr4_1:58475903-58475922 | None:intergenic | 25.0% |
| GATTATCAGTATATTCTAGG+AGG | - | chr4_1:58471784-58471803 | Msa0559270:three_prime_UTR | 30.0% | |
| TTTGGAGAAAAGAAGAAAAC+AGG | - | chr4_1:58471850-58471869 | Msa0559270:three_prime_UTR | 30.0% | |
| TCAATGGATGTGAAAAGTAA+TGG | - | chr4_1:58471880-58471899 | Msa0559270:three_prime_UTR | 30.0% | |
| ! | AAATGGAATTTGTTCACAAG+AGG | - | chr4_1:58471924-58471943 | Msa0559270:three_prime_UTR | 30.0% |
| GAAACAGATATCATCATTGT+AGG | - | chr4_1:58471955-58471974 | Msa0559270:three_prime_UTR | 30.0% | |
| ATGAATGTGATAGAGAAACA+AGG | - | chr4_1:58472409-58472428 | Msa0559270:CDS | 30.0% | |
| TGAATGTGATAGAGAAACAA+GGG | - | chr4_1:58472410-58472429 | Msa0559270:CDS | 30.0% | |
| GATTGCAAGAAAATATGTGT+TGG | - | chr4_1:58472516-58472535 | Msa0559270:intron | 30.0% | |
| TTGCAAGAAAATATGTGTTG+GGG | - | chr4_1:58472518-58472537 | Msa0559270:intron | 30.0% | |
| CATATGATTTGAGAATGACT+TGG | - | chr4_1:58472564-58472583 | Msa0559270:intron | 30.0% | |
| ! | CTATTTGAAGTTACTTGAGT+TGG | - | chr4_1:58472687-58472706 | Msa0559270:intron | 30.0% |
| TTGAATTATTGCAGATTGTG+TGG | - | chr4_1:58472940-58472959 | Msa0559270:CDS | 30.0% | |
| TGCAGTGTTAAATTAGAACA+AGG | - | chr4_1:58473219-58473238 | Msa0559270:intron | 30.0% | |
| ACATCGTTACTTGAAGAAAA+TGG | - | chr4_1:58473249-58473268 | Msa0559270:intron | 30.0% | |
| GAAGAAAATGGAACTATCAA+AGG | - | chr4_1:58473261-58473280 | Msa0559270:intron | 30.0% | |
| GTGAACTACAAAAATAAGAG+TGG | - | chr4_1:58473285-58473304 | Msa0559270:intron | 30.0% | |
| AAAACAACCATCACATACTA+TGG | + | chr4_1:58473340-58473359 | None:intergenic | 30.0% | |
| ATCAATCCAACAAAATGAGA+GGG | + | chr4_1:58473505-58473524 | None:intergenic | 30.0% | |
| AATCAATCCAACAAAATGAG+AGG | + | chr4_1:58473506-58473525 | None:intergenic | 30.0% | |
| AAATCATGGACATGTTATCT+TGG | - | chr4_1:58473552-58473571 | Msa0559270:CDS | 30.0% | |
| AATCATGGACATGTTATCTT+GGG | - | chr4_1:58473553-58473572 | Msa0559270:CDS | 30.0% | |
| ! | TACCAAGAGAAGGTAATTTT+TGG | + | chr4_1:58473651-58473670 | None:intergenic | 30.0% |
| AAATTACCTTCTCTTGGTAA+CGG | - | chr4_1:58473652-58473671 | Msa0559270:intron | 30.0% | |
| GGCAAATTATTTGAAAACTG+TGG | - | chr4_1:58473681-58473700 | Msa0559270:intron | 30.0% | |
| !!! | TTTCATTATTTTGGTACCTG+GGG | + | chr4_1:58473712-58473731 | None:intergenic | 30.0% |
| !! | TTTATTGCAGCAGTTGATAA+AGG | - | chr4_1:58473940-58473959 | Msa0559270:CDS | 30.0% |
| GACTCAAGTATAAAACAGTT+AGG | - | chr4_1:58474318-58474337 | Msa0559270:intron | 30.0% | |
| ! | TTCTCTGTGATATCATGTTT+TGG | - | chr4_1:58474386-58474405 | Msa0559270:intron | 30.0% |
| AAAAACTTAAGGGACTAAAG+TGG | - | chr4_1:58474487-58474506 | Msa0559270:CDS | 30.0% | |
| TTAGTCAAATAAAAACCCAG+CGG | - | chr4_1:58474541-58474560 | Msa0559270:CDS | 30.0% | |
| TCTACAATAAACACATTAGC+AGG | - | chr4_1:58474594-58474613 | Msa0559270:intron | 30.0% | |
| !!! | TGTTTTGATTATTTGAGCCT+TGG | - | chr4_1:58474678-58474697 | Msa0559270:intron | 30.0% |
| AAATGTAAAACCAAGCTCAA+TGG | + | chr4_1:58474756-58474775 | None:intergenic | 30.0% | |
| ! | TATCATTTTCCCCATTATCA+AGG | - | chr4_1:58475134-58475153 | Msa0559270:intron | 30.0% |
| TATAAGAAAAAAGGATGCTG+TGG | - | chr4_1:58475322-58475341 | Msa0559270:intron | 30.0% | |
| AACCTAACCAATCAAATCTT+AGG | - | chr4_1:58475593-58475612 | Msa0559270:CDS | 30.0% | |
| ! | TACCTAAGATTTGATTGGTT+AGG | + | chr4_1:58475598-58475617 | None:intergenic | 30.0% |
| CATAGTACCTAAGATTTGAT+TGG | + | chr4_1:58475603-58475622 | None:intergenic | 30.0% | |
| CAATCAAATCTTAGGTACTA+TGG | - | chr4_1:58475601-58475620 | Msa0559270:CDS | 30.0% | |
| GAAGTGTGAAGATTTGAAAA+AGG | + | chr4_1:58475631-58475650 | None:intergenic | 30.0% | |
| CTACTACTTTACATCACATA+AGG | - | chr4_1:58475674-58475693 | Msa0559270:CDS | 30.0% | |
| GTGATTCAAAATGAAGTTGT+AGG | + | chr4_1:58475758-58475777 | None:intergenic | 30.0% | |
| GTTAAGTCCATTCTTTCATT+TGG | - | chr4_1:58475893-58475912 | Msa0559270:intron | 30.0% | |
| ! | GAAAACAGGTTCAAGTTCAA+TGG | - | chr4_1:58471864-58471883 | Msa0559270:three_prime_UTR | 35.0% |
| GCAAAGACATCATCAGAAAA+TGG | - | chr4_1:58471907-58471926 | Msa0559270:three_prime_UTR | 35.0% | |
| ATTTGTTCACAAGAGGTTGT+TGG | - | chr4_1:58471931-58471950 | Msa0559270:three_prime_UTR | 35.0% | |
| TCTTGCTTATACACTTGGAA+AGG | - | chr4_1:58471999-58472018 | Msa0559270:three_prime_UTR | 35.0% | |
| ! | CATGACACCAATCTTTTCAT+TGG | + | chr4_1:58472149-58472168 | None:intergenic | 35.0% |
| !! | GCTGTTTTCATAAGCTATCT+TGG | - | chr4_1:58472266-58472285 | Msa0559270:three_prime_UTR | 35.0% |
| TGCAAGAAAATATGTGTTGG+GGG | - | chr4_1:58472519-58472538 | Msa0559270:intron | 35.0% | |
| AATTCACCCACAATTCTATC+AGG | + | chr4_1:58472652-58472671 | None:intergenic | 35.0% | |
| TTCTGCTGCTCAAATTCATA+TGG | - | chr4_1:58472898-58472917 | Msa0559270:CDS | 35.0% | |
| !! | ATTGATGCTCAAAGAGTGTT+TGG | - | chr4_1:58472968-58472987 | Msa0559270:intron | 35.0% |
| GTTTGGCTATGCACTTTATA+AGG | - | chr4_1:58472985-58473004 | Msa0559270:intron | 35.0% | |
| GCTATGCACTTTATAAGGAT+GGG | - | chr4_1:58472990-58473009 | Msa0559270:intron | 35.0% | |
| ! | TCTGGAAGAAGTTTTCACAA+TGG | - | chr4_1:58473061-58473080 | Msa0559270:intron | 35.0% |
| CATACAAAGAATGCGAGAAA+AGG | - | chr4_1:58473090-58473109 | Msa0559270:intron | 35.0% | |
| AACACTGCATTAATGCAAGA+AGG | + | chr4_1:58473208-58473227 | None:intergenic | 35.0% | |
| !!! | ATGGTTGTTTTTCCAACTTG+AGG | - | chr4_1:58473349-58473368 | Msa0559270:intron | 35.0% |
| AATCTTCCACATGCAAATCA+TGG | - | chr4_1:58473538-58473557 | Msa0559270:CDS | 35.0% | |
| GAATCTCGGTACTACTTATA+GGG | + | chr4_1:58473603-58473622 | None:intergenic | 35.0% | |
| ! | TACTAGTATCTAGCTTGAGT+AGG | + | chr4_1:58473741-58473760 | None:intergenic | 35.0% |
| ATAAAAGAAGCTTGCAGTTC+TGG | + | chr4_1:58473925-58473944 | None:intergenic | 35.0% | |
| TAAAGGATGACGCATATTGA+AGG | + | chr4_1:58474043-58474062 | None:intergenic | 35.0% | |
| AATATGCGTCATCCTTTAAC+AGG | - | chr4_1:58474045-58474064 | Msa0559270:CDS | 35.0% | |
| TATACTACTTACCTTGCGTA+GGG | + | chr4_1:58474184-58474203 | None:intergenic | 35.0% | |
| ATATACTACTTACCTTGCGT+AGG | + | chr4_1:58474185-58474204 | None:intergenic | 35.0% | |
| TTTGATTATTTGAGCCTTGG+AGG | - | chr4_1:58474681-58474700 | Msa0559270:intron | 35.0% | |
| !!! | ATTCGTTTTGGAGAAGGAAA+CGG | + | chr4_1:58474819-58474838 | None:intergenic | 35.0% |
| CTATGTATCAAACTCACCTT+AGG | - | chr4_1:58474969-58474988 | Msa0559270:intron | 35.0% | |
| CTTAGGACATGTTAATGAAC+AGG | + | chr4_1:58475219-58475238 | None:intergenic | 35.0% | |
| ! | GTATATTCTAGGAGGGATTC+TGG | - | chr4_1:58471792-58471811 | Msa0559270:three_prime_UTR | 40.0% |
| GATATCATCATTGTAGGTGC+CGG | - | chr4_1:58471961-58471980 | Msa0559270:three_prime_UTR | 40.0% | |
| AGTAACTTCAAATAGCCACC+AGG | + | chr4_1:58472682-58472701 | None:intergenic | 40.0% | |
| !! | TTACTTGAGTTGGGTCTTGA+GGG | - | chr4_1:58472697-58472716 | Msa0559270:CDS | 40.0% |
| TGAATTTGAGCAGCAGAATC+AGG | + | chr4_1:58472896-58472915 | None:intergenic | 40.0% | |
| GGCTATGCACTTTATAAGGA+TGG | - | chr4_1:58472989-58473008 | Msa0559270:intron | 40.0% | |
| TACCAAACTGTCTTATCCCT+TGG | - | chr4_1:58473018-58473037 | Msa0559270:intron | 40.0% | |
| TTCCAAGGGATAAGACAGTT+TGG | + | chr4_1:58473023-58473042 | None:intergenic | 40.0% | |
| TCCCTTGGAAAAGTTTGACT+CGG | - | chr4_1:58473033-58473052 | Msa0559270:intron | 40.0% | |
| ! | TCCGAGTCAAACTTTTCCAA+GGG | + | chr4_1:58473037-58473056 | None:intergenic | 40.0% |
| ! | ATCCGAGTCAAACTTTTCCA+AGG | + | chr4_1:58473038-58473057 | None:intergenic | 40.0% |
| !! | AAGTTTGACTCGGATGTATC+TGG | - | chr4_1:58473043-58473062 | Msa0559270:intron | 40.0% |
| ! | GAAGTTCCCTCTCATTTTGT+TGG | - | chr4_1:58473496-58473515 | Msa0559270:CDS | 40.0% |
| ! | ACATGTCCATGATTTGCATG+TGG | + | chr4_1:58473547-58473566 | None:intergenic | 40.0% |
| GGGTAAAACAAAATGGGTGA+AGG | + | chr4_1:58473583-58473602 | None:intergenic | 40.0% | |
| CGAATCTCGGTACTACTTAT+AGG | + | chr4_1:58473604-58473623 | None:intergenic | 40.0% | |
| ! | TAGTACCGAGATTCGTTGTT+TGG | - | chr4_1:58473609-58473628 | Msa0559270:CDS | 40.0% |
| ATCGACCAAACAACGAATCT+CGG | + | chr4_1:58473617-58473636 | None:intergenic | 40.0% | |
| !!! | GAAGGTAATTTTTGGCCAGT+AGG | + | chr4_1:58473643-58473662 | None:intergenic | 40.0% |
| GGCCAAAAATTACCTTCTCT+TGG | - | chr4_1:58473646-58473665 | Msa0559270:intron | 40.0% | |
| !! | TGTCTGACATTGTTTTGCTG+AGG | - | chr4_1:58474088-58474107 | Msa0559270:intron | 40.0% |
| ! | CATTGTTTTCTGTGTGAGCT+TGG | - | chr4_1:58474355-58474374 | Msa0559270:intron | 40.0% |
| GTGTTTATTGTAGATGCCAC+TGG | + | chr4_1:58474588-58474607 | None:intergenic | 40.0% | |
| ATTTCAATGCTAGCTGGATC+AGG | + | chr4_1:58474648-58474667 | None:intergenic | 40.0% | |
| ! | GGTTTTACATTTCTTCGCAG+TGG | - | chr4_1:58474764-58474783 | Msa0559270:intron | 40.0% |
| TTCCTTCTCCAAAACGAATG+TGG | - | chr4_1:58474820-58474839 | Msa0559270:intron | 40.0% | |
| !!! | ATCCACATTCGTTTTGGAGA+AGG | + | chr4_1:58474825-58474844 | None:intergenic | 40.0% |
| TCTCCAAAACGAATGTGGAT+CGG | - | chr4_1:58474825-58474844 | Msa0559270:intron | 40.0% | |
| ! | ACTCCTTCAGCCTTGATAAT+GGG | + | chr4_1:58475147-58475166 | None:intergenic | 40.0% |
| AGGACATGTTAATGAACAGG+AGG | + | chr4_1:58475216-58475235 | None:intergenic | 40.0% | |
| AACATGTCCTAAGAAACGCA+TGG | - | chr4_1:58475226-58475245 | Msa0559270:intron | 40.0% | |
| ATTTGCACCATGCGTTTCTT+AGG | + | chr4_1:58475236-58475255 | None:intergenic | 40.0% | |
| GCATGGTGCAAATCCAAATA+TGG | - | chr4_1:58475243-58475262 | Msa0559270:intron | 40.0% | |
| !! | CATCCGTTTTGGCAATTAGT+GGG | + | chr4_1:58475269-58475288 | None:intergenic | 40.0% |
| !! | ACATCCGTTTTGGCAATTAG+TGG | + | chr4_1:58475270-58475289 | None:intergenic | 40.0% |
| TAATTGCCAAAACGGATGTG+TGG | - | chr4_1:58475271-58475290 | Msa0559270:intron | 40.0% | |
| !! | TAAGTTGATTGCGTGTCAGA+AGG | + | chr4_1:58475373-58475392 | None:intergenic | 40.0% |
| TCTGACACGCAATCAACTTA+AGG | - | chr4_1:58475373-58475392 | Msa0559270:intron | 40.0% | |
| CTGACACGCAATCAACTTAA+GGG | - | chr4_1:58475374-58475393 | Msa0559270:intron | 40.0% | |
| !! | AGGGATTCTGGCTTGTAGTT+TGG | - | chr4_1:58471804-58471823 | Msa0559270:three_prime_UTR | 45.0% |
| GCTGCTCTTGCTTATACACT+TGG | - | chr4_1:58471994-58472013 | Msa0559270:three_prime_UTR | 45.0% | |
| !! | GATAAGCACTTGTTGTGCGA+CGG | + | chr4_1:58472326-58472345 | None:intergenic | 45.0% |
| ! | GGATTGTGCTTGTTTGTTGC+AGG | - | chr4_1:58472585-58472604 | Msa0559270:intron | 45.0% |
| ! | TGTGCTTGTTTGTTGCAGGA+TGG | - | chr4_1:58472589-58472608 | Msa0559270:intron | 45.0% |
| ! | CTTGTTTGTTGCAGGATGGA+CGG | - | chr4_1:58472593-58472612 | Msa0559270:intron | 45.0% |
| AACCGAGCCTGATAGAATTG+TGG | - | chr4_1:58472642-58472661 | Msa0559270:intron | 45.0% | |
| ACCGAGCCTGATAGAATTGT+GGG | - | chr4_1:58472643-58472662 | Msa0559270:intron | 45.0% | |
| ACCCACAATTCTATCAGGCT+CGG | + | chr4_1:58472647-58472666 | None:intergenic | 45.0% | |
| !! | GTTACTTGAGTTGGGTCTTG+AGG | - | chr4_1:58472696-58472715 | Msa0559270:CDS | 45.0% |
| TGGTCAAGAGTTCACAGCAA+AGG | - | chr4_1:58473305-58473324 | Msa0559270:intron | 45.0% | |
| CCATCACATACTATGGTGAG+AGG | + | chr4_1:58473333-58473352 | None:intergenic | 45.0% | |
| CCTCTCACCATAGTATGTGA+TGG | - | chr4_1:58473330-58473349 | Msa0559270:intron | 45.0% | |
| ACAAAGAGAACGCCTCAAGT+TGG | + | chr4_1:58473364-58473383 | None:intergenic | 45.0% | |
| GCGTTCTCTTTGTAACCCTA+AGG | - | chr4_1:58473371-58473390 | Msa0559270:CDS | 45.0% | |
| ATTTCGCCGTTACCAAGAGA+AGG | + | chr4_1:58473661-58473680 | None:intergenic | 45.0% | |
| !! | TTCTCTTGGTAACGGCGAAA+TGG | - | chr4_1:58473660-58473679 | Msa0559270:intron | 45.0% |
| ! | AAAGAAGCTTGCAGTTCTGG+AGG | + | chr4_1:58473922-58473941 | None:intergenic | 45.0% |
| GATGCAGGCATGCTTCTATT+TGG | + | chr4_1:58473982-58474001 | None:intergenic | 45.0% | |
| ATGCGTCATCCTTTAACAGG+AGG | - | chr4_1:58474048-58474067 | Msa0559270:intron | 45.0% | |
| GTCATTCCTCCTCCTGTTAA+AGG | + | chr4_1:58474060-58474079 | None:intergenic | 45.0% | |
| ATAGAGTCAAGCAAACCGCT+GGG | + | chr4_1:58474559-58474578 | None:intergenic | 45.0% | |
| AATAGAGTCAAGCAAACCGC+TGG | + | chr4_1:58474560-58474579 | None:intergenic | 45.0% | |
| TTGACTCTATTTGCAGCCAG+TGG | - | chr4_1:58474569-58474588 | Msa0559270:CDS | 45.0% | |
| AAAACCAAGCTCAATGGACG+CGG | + | chr4_1:58474750-58474769 | None:intergenic | 45.0% | |
| TTCTTCGCAGTGGCTGTATA+CGG | - | chr4_1:58474774-58474793 | Msa0559270:intron | 45.0% | |
| AAGGAAACGGTATCAAGAGG+CGG | + | chr4_1:58474806-58474825 | None:intergenic | 45.0% | |
| GAGAAGGAAACGGTATCAAG+AGG | + | chr4_1:58474809-58474828 | None:intergenic | 45.0% | |
| TGATGCACCCTGAAATGTCA+TGG | + | chr4_1:58475112-58475131 | None:intergenic | 45.0% | |
| ATGACATTTCAGGGTGCATC+AGG | - | chr4_1:58475111-58475130 | Msa0559270:intron | 45.0% | |
| TTCCCCATTATCAAGGCTGA+AGG | - | chr4_1:58475141-58475160 | Msa0559270:intron | 45.0% | |
| !! | CTCCTTCAGCCTTGATAATG+GGG | + | chr4_1:58475146-58475165 | None:intergenic | 45.0% |
| CACTCCTTCAGCCTTGATAA+TGG | + | chr4_1:58475148-58475167 | None:intergenic | 45.0% | |
| TAATATGCTGGCACACTTGC+TGG | + | chr4_1:58475186-58475205 | None:intergenic | 45.0% | |
| !! | GGAGGCATTCTGTAATATGC+TGG | + | chr4_1:58475198-58475217 | None:intergenic | 45.0% |
| ! | GGCAATTAGTGGGCCATATT+TGG | + | chr4_1:58475259-58475278 | None:intergenic | 45.0% |
| TGGCCCACTAATTGCCAAAA+CGG | - | chr4_1:58475263-58475282 | Msa0559270:intron | 45.0% | |
| GTGGGTGAATTGCTACAACC+TGG | - | chr4_1:58472661-58472680 | Msa0559270:intron | 50.0% | |
| GGTGAATTGCTACAACCTGG+TGG | - | chr4_1:58472664-58472683 | Msa0559270:intron | 50.0% | |
| TGTTTGGTCGATGTGCCTAC+TGG | - | chr4_1:58473625-58473644 | Msa0559270:intron | 50.0% | |
| ATCTCCCATCAGAAGAGCTC+CGG | + | chr4_1:58474019-58474038 | None:intergenic | 50.0% | |
| CGTCATCCTTTAACAGGAGG+AGG | - | chr4_1:58474051-58474070 | Msa0559270:intron | 50.0% | |
| AACAGGAGGAGGAATGACTG+TGG | - | chr4_1:58474062-58474081 | Msa0559270:intron | 50.0% | |
| GCATCATGCAGATTACGCAG+AGG | + | chr4_1:58474126-58474145 | None:intergenic | 50.0% | |
| GTAGGGTGTAGAACGACTCA+AGG | + | chr4_1:58474167-58474186 | None:intergenic | 50.0% | |
| !! | CTTGGAGGTGTTTGCTCAGA+CGG | - | chr4_1:58474696-58474715 | Msa0559270:intron | 50.0% |
| ! | GGACCAATAGCTCTACTCTC+CGG | - | chr4_1:58474717-58474736 | Msa0559270:intron | 50.0% |
| AGACCGGAGAGTAGAGCTAT+TGG | + | chr4_1:58474723-58474742 | None:intergenic | 50.0% | |
| ! | GCTCCGATCCACATTCGTTT+TGG | + | chr4_1:58474831-58474850 | None:intergenic | 50.0% |
| TTGCCAAAACGGATGTGTGG+TGG | - | chr4_1:58475274-58475293 | Msa0559270:intron | 50.0% | |
| ! | AGTCCACCACACATCCGTTT+TGG | + | chr4_1:58475280-58475299 | None:intergenic | 50.0% |
| GCTACAGTTCAAGCTCTCTG+AGG | - | chr4_1:58475566-58475585 | Msa0559270:CDS | 50.0% | |
| !! | ATTGTAGGTGCCGGAGTTGC+TGG | - | chr4_1:58471970-58471989 | Msa0559270:three_prime_UTR | 55.0% |
| AAGAGCAGCACCAGCAACTC+CGG | + | chr4_1:58471983-58472002 | None:intergenic | 55.0% | |
| GAAAACTGTGGTAGCTCCCC+AGG | - | chr4_1:58473693-58473712 | Msa0559270:intron | 55.0% | |
| TCTCCCATCAGAAGAGCTCC+GGG | + | chr4_1:58474018-58474037 | None:intergenic | 55.0% | |
| GTCGTTCTACACCCTACGCA+AGG | - | chr4_1:58474170-58474189 | Msa0559270:CDS | 55.0% | |
| CGGCGCATTTCAATGCTAGC+TGG | + | chr4_1:58474654-58474673 | None:intergenic | 55.0% | |
| CGTCTGAGCAAACACCTCCA+AGG | + | chr4_1:58474698-58474717 | None:intergenic | 55.0% | |
| CAATGGACGCGGATTCAGAC+CGG | + | chr4_1:58474739-58474758 | None:intergenic | 55.0% | |
| GAATCCGCGTCCATTGAGCT+TGG | - | chr4_1:58474743-58474762 | Msa0559270:intron | 55.0% | |
| GCAGTGGCTGTATACGGTGT+TGG | - | chr4_1:58474780-58474799 | Msa0559270:intron | 55.0% | |
| GCGTGTCAGAAGGCCATTGT+GGG | + | chr4_1:58475363-58475382 | None:intergenic | 55.0% | |
| TGCGTGTCAGAAGGCCATTG+TGG | + | chr4_1:58475364-58475383 | None:intergenic | 55.0% | |
| GGGGTGGGATAAGGTGATGC+AGG | + | chr4_1:58473997-58474016 | None:intergenic | 60.0% | |
| GCATCACCTTATCCCACCCC+CGG | - | chr4_1:58473997-58474016 | Msa0559270:CDS | 60.0% | |
| ATCAGAAGAGCTCCGGGGGT+GGG | + | chr4_1:58474012-58474031 | None:intergenic | 60.0% | |
| ACCCCCGGAGCTCTTCTGAT+GGG | - | chr4_1:58474012-58474031 | Msa0559270:CDS | 60.0% | |
| TCCCATCAGAAGAGCTCCGG+GGG | + | chr4_1:58474016-58474035 | None:intergenic | 60.0% | |
| CTCCCATCAGAAGAGCTCCG+GGG | + | chr4_1:58474017-58474036 | None:intergenic | 60.0% | |
| AGAGCTCCGGGGGTGGGATA+AGG | + | chr4_1:58474006-58474025 | None:intergenic | 65.0% | |
| CATCAGAAGAGCTCCGGGGG+TGG | + | chr4_1:58474013-58474032 | None:intergenic | 65.0% | |
| CACCCCCGGAGCTCTTCTGA+TGG | - | chr4_1:58474011-58474030 | Msa0559270:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 58471576 | 58475983 | 58471576 | ID=Msa0559270;Name=Msa0559270 |
| chr4_1 | mRNA | 58471576 | 58475983 | 58471576 | ID=Msa0559270-mRNA-1;Parent=Msa0559270;Name=Msa0559270-mRNA-1;_AED=0.10;_eAED=0.10;_QI=182|1|1|1|0.77|0.6|10|717|525 |
| chr4_1 | exon | 58471576 | 58471644 | 58471576 | ID=Msa0559270-mRNA-1:exon:17781;Parent=Msa0559270-mRNA-1 |
| chr4_1 | exon | 58471684 | 58472436 | 58471684 | ID=Msa0559270-mRNA-1:exon:17780;Parent=Msa0559270-mRNA-1 |
| chr4_1 | exon | 58472696 | 58472974 | 58472696 | ID=Msa0559270-mRNA-1:exon:17779;Parent=Msa0559270-mRNA-1 |
| chr4_1 | exon | 58473368 | 58473643 | 58473368 | ID=Msa0559270-mRNA-1:exon:17778;Parent=Msa0559270-mRNA-1 |
| chr4_1 | exon | 58473845 | 58474066 | 58473845 | ID=Msa0559270-mRNA-1:exon:17777;Parent=Msa0559270-mRNA-1 |
| chr4_1 | exon | 58474167 | 58474335 | 58474167 | ID=Msa0559270-mRNA-1:exon:17776;Parent=Msa0559270-mRNA-1 |
| chr4_1 | exon | 58474431 | 58474605 | 58474431 | ID=Msa0559270-mRNA-1:exon:17775;Parent=Msa0559270-mRNA-1 |
| chr4_1 | exon | 58474841 | 58474952 | 58474841 | ID=Msa0559270-mRNA-1:exon:17774;Parent=Msa0559270-mRNA-1 |
| chr4_1 | exon | 58475539 | 58475884 | 58475539 | ID=Msa0559270-mRNA-1:exon:17773;Parent=Msa0559270-mRNA-1 |
| chr4_1 | exon | 58475908 | 58475983 | 58475908 | ID=Msa0559270-mRNA-1:exon:17772;Parent=Msa0559270-mRNA-1 |
| chr4_1 | five_prime_UTR | 58475908 | 58475983 | 58475908 | ID=Msa0559270-mRNA-1:five_prime_utr;Parent=Msa0559270-mRNA-1 |
| chr4_1 | five_prime_UTR | 58475779 | 58475884 | 58475779 | ID=Msa0559270-mRNA-1:five_prime_utr;Parent=Msa0559270-mRNA-1 |
| chr4_1 | CDS | 58475539 | 58475778 | 58475539 | ID=Msa0559270-mRNA-1:cds;Parent=Msa0559270-mRNA-1 |
| chr4_1 | CDS | 58474841 | 58474952 | 58474841 | ID=Msa0559270-mRNA-1:cds;Parent=Msa0559270-mRNA-1 |
| chr4_1 | CDS | 58474431 | 58474605 | 58474431 | ID=Msa0559270-mRNA-1:cds;Parent=Msa0559270-mRNA-1 |
| chr4_1 | CDS | 58474167 | 58474335 | 58474167 | ID=Msa0559270-mRNA-1:cds;Parent=Msa0559270-mRNA-1 |
| chr4_1 | CDS | 58473845 | 58474066 | 58473845 | ID=Msa0559270-mRNA-1:cds;Parent=Msa0559270-mRNA-1 |
| chr4_1 | CDS | 58473368 | 58473643 | 58473368 | ID=Msa0559270-mRNA-1:cds;Parent=Msa0559270-mRNA-1 |
| chr4_1 | CDS | 58472696 | 58472974 | 58472696 | ID=Msa0559270-mRNA-1:cds;Parent=Msa0559270-mRNA-1 |
| chr4_1 | CDS | 58472332 | 58472436 | 58472332 | ID=Msa0559270-mRNA-1:cds;Parent=Msa0559270-mRNA-1 |
| chr4_1 | three_prime_UTR | 58471684 | 58472331 | 58471684 | ID=Msa0559270-mRNA-1:three_prime_utr;Parent=Msa0559270-mRNA-1 |
| chr4_1 | three_prime_UTR | 58471576 | 58471644 | 58471576 | ID=Msa0559270-mRNA-1:three_prime_utr;Parent=Msa0559270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
