AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0906100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0906100 MtrunA17_Chr6g0454011 94.904 471 3 1 1 471 52 501 0.0 900
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0906100 AT3G01060.1 73.950 476 92 6 3 471 4 454 0.0 680
Msa0906100 AT3G01060.2 72.269 476 92 7 3 471 4 446 0.0 655
Msa0906100 AT3G01060.3 73.475 377 68 6 3 372 4 355 0.0 523

Find 150 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTAAAATCTGGCGGATTA+TGG 0.128307 6_2:+4626077 Msa0906100:CDS
TCAGACCTACTTGCGTTTAT+TGG 0.157234 6_2:-4628582 None:intergenic
TCTTGGTCCATCTAATCTTT+TGG 0.218848 6_2:+4628039 Msa0906100:CDS
AAGAAGAGATTCATTCAATT+TGG 0.224656 6_2:+4624371 Msa0906100:CDS
TTATATTAACACACTATTTC+GGG 0.225635 6_2:-4629050 None:intergenic
GCTTCTGCCACAAGTTCTTC+TGG 0.237288 6_2:+4624399 Msa0906100:CDS
ATTATATTAACACACTATTT+CGG 0.244417 6_2:-4629051 None:intergenic
ACACGTGGAATATTGGTCTT+AGG 0.264222 6_2:-4624102 None:intergenic
AACTTACCTTTAGAATTCTT+TGG 0.273137 6_2:+4627215 Msa0906100:CDS
CAAGCCTTCAAGGACATTAT+TGG 0.280700 6_2:+4627701 Msa0906100:CDS
ACTAAAATCTGGCGGATTAT+GGG 0.304739 6_2:+4626078 Msa0906100:CDS
CTTGCAGCTTATCAAAGAAT+TGG 0.308243 6_2:+4627064 Msa0906100:intron
CGCTTATTTCCTTAGGAATT+GGG 0.323622 6_2:+4627652 Msa0906100:intron
TATGTTGTTCATTTCATATC+AGG 0.333041 6_2:+4628950 Msa0906100:three_prime_UTR
TTGCAGCTTATCAAAGAATT+GGG 0.346242 6_2:+4627065 Msa0906100:intron
TAATGATCATTACCAACTTC+TGG 0.350183 6_2:-4627320 None:intergenic
CTTTCTACCACAAGCCTTCA+AGG 0.353925 6_2:+4627691 Msa0906100:CDS
TTTGTTGGTGGTTCTTTAAA+GGG 0.354232 6_2:+4624318 Msa0906100:CDS
TCCTCAATAGACTCACTATT+AGG 0.356240 6_2:+4624490 Msa0906100:CDS
CTACGCGTCAGTTCATGTTC+AGG 0.357359 6_2:+4626936 Msa0906100:CDS
TCCAACTGATGAGTGTATTC+AGG 0.357974 6_2:+4626117 Msa0906100:CDS
AGAATATTTATTAAAATCCT+TGG 0.358759 6_2:-4629228 None:intergenic
ATACACACGGGTGGCTGTTT+CGG 0.365078 6_2:-4627747 None:intergenic
AACAAAAGAAACCTGCAAAA+AGG 0.366200 6_2:+4627864 Msa0906100:CDS
TTCTTCAAAAGTGTGGAATT+TGG 0.367618 6_2:-4624264 None:intergenic
TGGCCGTTACGCACGGGTGC+TGG 0.368646 6_2:+4629391 Msa0906100:three_prime_UTR
ATTAAAATCCTTGGACCATT+GGG 0.372877 6_2:-4629219 None:intergenic
CTCTGACATTTGTTCAAAGC+TGG 0.386422 6_2:-4628071 None:intergenic
CACTCATCAGTTGGAGCTAT+AGG 0.386652 6_2:-4626109 None:intergenic
GTGCGCATTTCCCTCGCAAT+GGG 0.390728 6_2:+4629161 Msa0906100:three_prime_UTR
TATTAAAATCCTTGGACCAT+TGG 0.396698 6_2:-4629220 None:intergenic
GGAACAACAAGCAGCGCTAA+TGG 0.398091 6_2:+4624420 Msa0906100:CDS
TTGGAAATTGCAGGAGCAAT+TGG 0.399577 6_2:+4629326 Msa0906100:three_prime_UTR
AGGCCGTGAAGGGTTGTATA+TGG 0.404912 6_2:+4625987 Msa0906100:intron
TTGTCAATTACAGGTTCATC+AGG 0.412901 6_2:-4627843 None:intergenic
AAGAAAATTTCCGCGTGCTC+AGG 0.420797 6_2:+4627157 Msa0906100:CDS
GTCTGACACATGCGCAGGTT+TGG 0.426500 6_2:+4629255 Msa0906100:three_prime_UTR
CTGGTTAGAAAGAACACTAT+TGG 0.426974 6_2:+4629307 Msa0906100:three_prime_UTR
AATTTCCGCGTGCTCAGGTA+TGG 0.430756 6_2:+4627162 Msa0906100:CDS
ACAGTTATTAAACTAAAATC+TGG 0.436974 6_2:+4626067 Msa0906100:CDS
TTAGGCTCCAAAAGATTAGA+TGG 0.438673 6_2:-4628046 None:intergenic
GTCACCAATAATGTCCTTGA+AGG 0.441505 6_2:-4627705 None:intergenic
ATGAGGATTTATCCACTCCT+TGG 0.444928 6_2:+4627264 Msa0906100:CDS
TTGTGCTCGTAAGCAAAAGT+AGG 0.446804 6_2:-4627113 None:intergenic
ATTTGTTCAAAGCTGGCATT+AGG 0.452992 6_2:-4628064 None:intergenic
TTGACAGTATTTCGCGCGAT+TGG 0.454758 6_2:+4628523 Msa0906100:CDS
CGATGATTCAGGTAAAAGAC+TGG 0.456397 6_2:+4628499 Msa0906100:intron
CTTAGGAATTGGGCCATATG+TGG 0.458324 6_2:+4627662 Msa0906100:intron
TTCGAACAAGAGCAGGCATT+AGG 0.461274 6_2:+4626013 Msa0906100:CDS
TACGCGTCAGTTCATGTTCA+GGG 0.461352 6_2:+4626937 Msa0906100:CDS
TGGACGACCGGTATGATGCT+TGG 0.463217 6_2:+4628640 Msa0906100:CDS
AGGAAAGGACCAAGTGGAAA+AGG 0.464210 6_2:-4624471 None:intergenic
TGAGGATTTATCCACTCCTT+GGG 0.466492 6_2:+4627265 Msa0906100:CDS
GTCATCAGGAGGAAAGTAAC+TGG 0.467030 6_2:-4628706 None:intergenic
ATTGCAATTACTTGTCAACT+TGG 0.469215 6_2:+4628837 Msa0906100:three_prime_UTR
GCTGTGAAGAAAACTGTTGC+AGG 0.470318 6_2:+4628774 Msa0906100:CDS
AGAACACTATTGGAAATTGC+AGG 0.472015 6_2:+4629317 Msa0906100:three_prime_UTR
TCATAAACTAACTAATGTAC+TGG 0.474013 6_2:-4624186 None:intergenic
TAGAAAGCAACCTCCACATA+TGG 0.476242 6_2:-4627675 None:intergenic
AAACTCATCAAGAGACGATA+AGG 0.479502 6_2:-4628736 None:intergenic
CTTCATATTGAAGGTGTGTC+CGG 0.482214 6_2:+4626883 Msa0906100:intron
TGGGAAAGACGCAACAGTCC+TGG 0.485042 6_2:-4629200 None:intergenic
GGCTGTAAAGATTCTTAGCA+AGG 0.487404 6_2:+4627809 Msa0906100:CDS
AATTCTAAAGGTAAGTTCAA+TGG 0.489115 6_2:-4627209 None:intergenic
GTCTAGAGTTCTGACTTTGG+TGG 0.489872 6_2:-4629013 None:intergenic
GGCCGGTGAAATAGAGCAAA+AGG 0.491840 6_2:+4627286 Msa0906100:CDS
TGGACTTGCCACAGGAGTAC+TGG 0.497188 6_2:+4629288 Msa0906100:three_prime_UTR
TGCTCTATTTCACCGGCCCA+AGG 0.499248 6_2:-4627281 None:intergenic
GCAACTCAGAAACGTACCTT+TGG 0.499786 6_2:+4629371 Msa0906100:three_prime_UTR
ATTGGTGCGGAGAAGTGAGC+TGG 0.500223 6_2:-4628564 None:intergenic
GATAAGGTTCTCATGTCATC+AGG 0.500570 6_2:-4628720 None:intergenic
TAGCCATATACAACCCTTCA+CGG 0.506857 6_2:-4625990 None:intergenic
TATGGGTGGCACCGAGGCAA+TGG 0.508704 6_2:+4627180 Msa0906100:CDS
GTTCTAAGCTCACCAGAAGT+TGG 0.509275 6_2:+4627308 Msa0906100:CDS
CTTCAGCAAAGTTCCTGAAA+AGG 0.514868 6_2:+4628129 Msa0906100:CDS
GACTGTTGCGTCTTTCCCAA+TGG 0.517072 6_2:+4629204 Msa0906100:three_prime_UTR
GTACCTTTGGCCGTTACGCA+CGG 0.517230 6_2:+4629384 Msa0906100:three_prime_UTR
TTAATCATTGTAGGCCGTGA+AGG 0.519335 6_2:+4625976 Msa0906100:intron
TACCTTTGGCCGTTACGCAC+GGG 0.520728 6_2:+4629385 Msa0906100:three_prime_UTR
TTCACCTATCGTCAAGACTC+TGG 0.524890 6_2:+4628105 Msa0906100:CDS
TGGCACCGAGGCAATGGAGT+TGG 0.525912 6_2:+4627186 Msa0906100:CDS
ATCTGCAGGATGGGAAAGAA+TGG 0.526729 6_2:+4628000 Msa0906100:intron
GTAGACGGTGTTGGTGGTAT+CGG 0.526787 6_2:-4626917 None:intergenic
AAAATGCCAAAGAATTCTAA+AGG 0.528304 6_2:-4627221 None:intergenic
ACTGTCTAGAGTTCTGACTT+TGG 0.529148 6_2:-4629016 None:intergenic
TGCAGCTTATCAAAGAATTG+GGG 0.531720 6_2:+4627066 Msa0906100:intron
TATATGATCTCCCTTGGTCG+TGG 0.534470 6_2:+4629104 Msa0906100:three_prime_UTR
GGGAGGACGATGTATTCAAC+CGG 0.537132 6_2:-4627092 None:intergenic
GCGTCTTTCCCAATGGTCCA+AGG 0.537402 6_2:+4629211 Msa0906100:three_prime_UTR
ACCTGAATACACTCATCAGT+TGG 0.537948 6_2:-4626118 None:intergenic
AACATGAACTGACGCGTAGA+CGG 0.538795 6_2:-4626932 None:intergenic
GATTCTTAGCAAGGGAAAAG+AGG 0.539442 6_2:+4627818 Msa0906100:CDS
ATGGCTATTCGAACAAGAGC+AGG 0.541631 6_2:+4626006 Msa0906100:CDS
TTCAAGGACATTATTGGTGA+CGG 0.541943 6_2:+4627707 Msa0906100:CDS
TCATGGTATATGATCTCCCT+TGG 0.543054 6_2:+4629098 Msa0906100:three_prime_UTR
CACCCGTGCGTAACGGCCAA+AGG 0.546111 6_2:-4629387 None:intergenic
GCAGGTTTGGATACGACTAC+TGG 0.547549 6_2:+4629268 Msa0906100:three_prime_UTR
GATTTATCCACTCCTTGGGC+CGG 0.550233 6_2:+4627269 Msa0906100:CDS
AAAGGTACGTTTCTGAGTTG+CGG 0.552699 6_2:-4629369 None:intergenic
TGACGCGTAGACGGTGTTGG+TGG 0.553395 6_2:-4626923 None:intergenic
TCCTAATAGTGAGTCTATTG+AGG 0.554177 6_2:-4624491 None:intergenic
ACGACTACTGGACTTGCCAC+AGG 0.558396 6_2:+4629280 Msa0906100:three_prime_UTR
GGGACTGTTAACTTCAAGCC+AGG 0.559277 6_2:+4629182 Msa0906100:three_prime_UTR
GCTGTAAAGATTCTTAGCAA+GGG 0.559862 6_2:+4627810 Msa0906100:CDS
TGTGCTCGTAAGCAAAAGTA+GGG 0.562067 6_2:-4627112 None:intergenic
TTTGATTGATGAAAACAGAA+GGG 0.567871 6_2:-4628673 None:intergenic
GGATTCTTTGTTAATACACA+CGG 0.567921 6_2:-4627760 None:intergenic
CTCATAGAATCCACGACCAA+GGG 0.571934 6_2:-4629114 None:intergenic
ATTTCCGCGTGCTCAGGTAT+GGG 0.573729 6_2:+4627163 Msa0906100:CDS
TATTTCACCGGCCCAAGGAG+TGG 0.574665 6_2:-4627276 None:intergenic
TGTGCGCATTTCCCTCGCAA+TGG 0.577033 6_2:+4629160 Msa0906100:three_prime_UTR
GTGAAGGCCAAGCATCATAC+CGG 0.577363 6_2:-4628647 None:intergenic
TCAGCGTCTGACACATGCGC+AGG 0.582447 6_2:+4629250 Msa0906100:three_prime_UTR
AATGGCCAACTCCATTGCCT+CGG 0.585261 6_2:-4627191 None:intergenic
CCGTTACGCACGGGTGCTGG+AGG 0.586138 6_2:+4629394 Msa0906100:three_prime_UTR
TAATCATTGTAGGCCGTGAA+GGG 0.590590 6_2:+4625977 Msa0906100:intron
CCTCCAGCACCCGTGCGTAA+CGG 0.590922 6_2:-4629394 None:intergenic
TAGGTACATACATGGAGTGA+AGG 0.591757 6_2:-4624155 None:intergenic
CCGCACCAATAAACGCAAGT+AGG 0.592444 6_2:+4628577 Msa0906100:CDS
AAGACCAGAGTCTTGACGAT+AGG 0.605351 6_2:-4628109 None:intergenic
AGTTAACAGTCCCCATTGCG+AGG 0.609758 6_2:-4629172 None:intergenic
ATAATGTCCTTGAAGGCTTG+TGG 0.611563 6_2:-4627698 None:intergenic
GTTATTAAACTAAAATCTGG+CGG 0.611634 6_2:+4626070 Msa0906100:CDS
TCCGCGTGCTCAGGTATGGG+TGG 0.616846 6_2:+4627166 Msa0906100:CDS
ATAGTGAGTCTATTGAGGAA+AGG 0.617010 6_2:-4624486 None:intergenic
CTTTCTAACCAGTACTCCTG+TGG 0.617928 6_2:-4629296 None:intergenic
AGGAATTGGGCCATATGTGG+AGG 0.619830 6_2:+4627665 Msa0906100:intron
CCTACTTGCGTTTATTGGTG+CGG 0.626930 6_2:-4628577 None:intergenic
GATTCTTTGTTAATACACAC+GGG 0.629086 6_2:-4627759 None:intergenic
GATGATTCAGGTAAAAGACT+GGG 0.634111 6_2:+4628500 Msa0906100:intron
TTGGTGCGGAGAAGTGAGCT+GGG 0.636413 6_2:-4628563 None:intergenic
ACTCATAGAATCCACGACCA+AGG 0.637373 6_2:-4629115 None:intergenic
AATGCGCACATCGTCATCTG+AGG 0.637469 6_2:-4629147 None:intergenic
TGAAGAAAACTGTTGCAGGA+AGG 0.642462 6_2:+4628778 Msa0906100:CDS
TGTTGTTCCAGAAGAACTTG+TGG 0.643404 6_2:-4624406 None:intergenic
GTTAACAGTCCCCATTGCGA+GGG 0.643919 6_2:-4629171 None:intergenic
GCAGCTTATCAAAGAATTGG+GGG 0.644987 6_2:+4627067 Msa0906100:intron
CTCAGGTATGGGTGGCACCG+AGG 0.654459 6_2:+4627174 Msa0906100:CDS
AACTGACGCGTAGACGGTGT+TGG 0.654554 6_2:-4626926 None:intergenic
GATGTGGTTCTTCAAAAGTG+TGG 0.655033 6_2:-4624271 None:intergenic
GAAAACAGAAGGGAAAGTGA+AGG 0.656206 6_2:-4628663 None:intergenic
AAGGTTCTCATGTCATCAGG+AGG 0.664702 6_2:-4628717 None:intergenic
GCCACCCATACCTGAGCACG+CGG 0.672524 6_2:-4627167 None:intergenic
TGCGCATTTCCCTCGCAATG+GGG 0.676662 6_2:+4629162 Msa0906100:three_prime_UTR
GGTATCGGTCTGTCAAACAC+CGG 0.679615 6_2:-4626902 None:intergenic
TAGACTCACTATTAGGACTG+AGG 0.692333 6_2:+4624497 Msa0906100:CDS
TCTTTGTTAATACACACGGG+TGG 0.695600 6_2:-4627756 None:intergenic
CTATTGAGGAAAGGACCAAG+TGG 0.697181 6_2:-4624477 None:intergenic
GCTCGTAAGCAAAAGTAGGG+AGG 0.715485 6_2:-4627109 None:intergenic
GTTGCGGTGTCGATGATGAG+CGG 0.734889 6_2:-4629353 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTGATTTTTCTTATAAT+TGG + chr6_2:4624528-4624547 Msa0906100:intron 10.0%
!! AAAAAAAACATTATTGGATA+TGG - chr6_2:4624133-4624152 None:intergenic 15.0%
!! AAGGAAAAAAAAAACATTAT+TGG - chr6_2:4624139-4624158 None:intergenic 15.0%
!! TTTAAAAAACTGAAAAACTT+AGG - chr6_2:4624867-4624886 None:intergenic 15.0%
!!! TCAGTTATTTAGTTTAATTT+TGG + chr6_2:4625872-4625891 Msa0906100:intron 15.0%
!!! TTGATTTAGAATTTATTGAT+TGG + chr6_2:4626775-4626794 Msa0906100:intron 15.0%
!!! TGATTTAGAATTTATTGATT+GGG + chr6_2:4626776-4626795 Msa0906100:intron 15.0%
!! ATAAAATCCATATTATTGAT+AGG + chr6_2:4627000-4627019 Msa0906100:intron 15.0%
!! TAAAATCCATATTATTGATA+GGG + chr6_2:4627001-4627020 Msa0906100:intron 15.0%
!!! AAAATGTAAATGTTTTACTA+TGG + chr6_2:4628915-4628934 Msa0906100:three_prime_UTR 15.0%
!! ATTATATTAACACACTATTT+CGG - chr6_2:4629054-4629073 None:intergenic 15.0%
!! AGAATATTTATTAAAATCCT+TGG - chr6_2:4629231-4629250 None:intergenic 15.0%
!! CAACAAAAAAGTAACAAAAA+TGG + chr6_2:4624218-4624237 Msa0906100:exon 20.0%
!!! TTGAATGTTTTAAATTGATG+TGG - chr6_2:4624290-4624309 None:intergenic 20.0%
!!! GTTTCTTTTTATTACTCAAT+TGG + chr6_2:4624555-4624574 Msa0906100:intron 20.0%
!!! TTTTTATTACTCAATTGGTT+TGG + chr6_2:4624560-4624579 Msa0906100:intron 20.0%
!! TATCATATTATGTCACAAAT+TGG - chr6_2:4624613-4624632 None:intergenic 20.0%
!!! TGATTTTCTCAAATTATTAG+TGG - chr6_2:4624992-4625011 None:intergenic 20.0%
!!! CTATACAAAAATTGGTTTTT+AGG + chr6_2:4625117-4625136 Msa0906100:intron 20.0%
!! ATTATCCACTTTATATAACA+AGG - chr6_2:4625282-4625301 None:intergenic 20.0%
!! TCAAAATCCAATAAAAGTAA+AGG - chr6_2:4625370-4625389 None:intergenic 20.0%
!!! ATAATAATTAAGGGTACTAT+TGG - chr6_2:4625568-4625587 None:intergenic 20.0%
!!! TAGTAAAAGTATCATATCTT+TGG + chr6_2:4625659-4625678 Msa0906100:intron 20.0%
!! ACAGTTATTAAACTAAAATC+TGG + chr6_2:4626067-4626086 Msa0906100:CDS 20.0%
!! AAAGAATTCCAATAAAAAAG+GGG - chr6_2:4626671-4626690 None:intergenic 20.0%
!! GAAAGAATTCCAATAAAAAA+GGG - chr6_2:4626672-4626691 None:intergenic 20.0%
!! AGAAAGAATTCCAATAAAAA+AGG - chr6_2:4626673-4626692 None:intergenic 20.0%
!! TTCTAAATCAAATCTGAAAA+TGG - chr6_2:4626766-4626785 None:intergenic 20.0%
!! ACAAAGATTAAAGTTCTATT+TGG - chr6_2:4627608-4627627 None:intergenic 20.0%
!! TTATTACCTAATATAGTGTT+AGG + chr6_2:4628205-4628224 Msa0906100:intron 20.0%
!! TATTACCTAATATAGTGTTA+GGG + chr6_2:4628206-4628225 Msa0906100:intron 20.0%
!!! GCATATAGTTTTGTTAATTT+AGG + chr6_2:4628873-4628892 Msa0906100:three_prime_UTR 20.0%
!!! TATAGTTTTGTTAATTTAGG+AGG + chr6_2:4628876-4628895 Msa0906100:three_prime_UTR 20.0%
!!! TAAATGTTTTACTATGGAAT+AGG + chr6_2:4628921-4628940 Msa0906100:three_prime_UTR 20.0%
!! TTATATTAACACACTATTTC+GGG - chr6_2:4629053-4629072 None:intergenic 20.0%
!!! GTTATAATTTTATGAGTTCA+TGG + chr6_2:4629081-4629100 Msa0906100:three_prime_UTR 20.0%
!!! TTTTGTTTTAGGTACATACA+TGG - chr6_2:4624166-4624185 None:intergenic 25.0%
!!! TAATGTACTGGTTTTGTTTT+AGG - chr6_2:4624177-4624196 None:intergenic 25.0%
! TCATAAACTAACTAATGTAC+TGG - chr6_2:4624189-4624208 None:intergenic 25.0%
!! CATTCAAGTACAAATTTTGT+TGG + chr6_2:4624303-4624322 Msa0906100:CDS 25.0%
! AAGAAGAGATTCATTCAATT+TGG + chr6_2:4624371-4624390 Msa0906100:CDS 25.0%
! TGACATGTAATATGTGAAAA+TGG + chr6_2:4624671-4624690 Msa0906100:intron 25.0%
! AAGTGATTGAATATAATCAC+CGG + chr6_2:4624694-4624713 Msa0906100:intron 25.0%
! ATATAATCACCGGTAATAAT+TGG + chr6_2:4624704-4624723 Msa0906100:intron 25.0%
!! CCATTTTATCCAATTATTAC+CGG - chr6_2:4624716-4624735 None:intergenic 25.0%
!!! TTTTTTAAACTGCAATGCTA+AGG + chr6_2:4624878-4624897 Msa0906100:intron 25.0%
! ATTTCCTTTACTGAATTCTA+TGG + chr6_2:4625242-4625261 Msa0906100:intron 25.0%
! TTTCCTTTACTGAATTCTAT+GGG + chr6_2:4625243-4625262 Msa0906100:intron 25.0%
! GTGTGGACAATAATAATTAA+GGG - chr6_2:4625577-4625596 None:intergenic 25.0%
! TGTGTGGACAATAATAATTA+AGG - chr6_2:4625578-4625597 None:intergenic 25.0%
! CATTGTACAAAATGATACTT+TGG - chr6_2:4625605-4625624 None:intergenic 25.0%
! CTACAATGATTAACACAAAA+AGG - chr6_2:4625969-4625988 None:intergenic 25.0%
!! CTTTTTGTGTTAATCATTGT+AGG + chr6_2:4625967-4625986 Msa0906100:intron 25.0%
! GTTATTAAACTAAAATCTGG+CGG + chr6_2:4626070-4626089 Msa0906100:CDS 25.0%
!! TAAGAGATTGGTAATCATAA+TGG - chr6_2:4626148-4626167 None:intergenic 25.0%
!!! TAACTTTGAATGGTCTTTTT+TGG + chr6_2:4626171-4626190 Msa0906100:intron 25.0%
!! TTTCTTCTCTTTCACATTTT+TGG + chr6_2:4626227-4626246 Msa0906100:intron 25.0%
!! TCTATGAATTCCACATATTT+TGG + chr6_2:4626690-4626709 Msa0906100:intron 25.0%
!! ATTTTGGACCATTGTTTATT+TGG + chr6_2:4626706-4626725 Msa0906100:intron 25.0%
! AAATCACCCTATCAATAATA+TGG - chr6_2:4627010-4627029 None:intergenic 25.0%
!! AATTCTAAAGGTAAGTTCAA+TGG - chr6_2:4627212-4627231 None:intergenic 25.0%
!!! AACTTACCTTTAGAATTCTT+TGG + chr6_2:4627215-4627234 Msa0906100:CDS 25.0%
! AAAATGCCAAAGAATTCTAA+AGG - chr6_2:4627224-4627243 None:intergenic 25.0%
!!! TGGTAATGATCATTAGTTTT+TGG + chr6_2:4627328-4627347 Msa0906100:intron 25.0%
! GGATATTATCATACTAAGTT+TGG + chr6_2:4627349-4627368 Msa0906100:intron 25.0%
! AATAAGCTAAAAGCAGTTTA+GGG - chr6_2:4627457-4627476 None:intergenic 25.0%
! AAATAAGCTAAAAGCAGTTT+AGG - chr6_2:4627458-4627477 None:intergenic 25.0%
!!! ATTTTTTGCAGATGCTAAAA+GGG - chr6_2:4627784-4627803 None:intergenic 25.0%
!!! TTTCTTTTGTTGTCAATTAC+AGG - chr6_2:4627855-4627874 None:intergenic 25.0%
!!! GTTCTACAAATTTTGTTTCT+TGG + chr6_2:4628022-4628041 Msa0906100:CDS 25.0%
! TAAAATTAGTCAATCCAAAC+AGG - chr6_2:4628232-4628251 None:intergenic 25.0%
! TATGGAAATAAGCTAGAAAA+GGG - chr6_2:4628274-4628293 None:intergenic 25.0%
! TTATGGAAATAAGCTAGAAA+AGG - chr6_2:4628275-4628294 None:intergenic 25.0%
! TTTGATTGATGAAAACAGAA+GGG - chr6_2:4628676-4628695 None:intergenic 25.0%
!!! TTTTGATTGATGAAAACAGA+AGG - chr6_2:4628677-4628696 None:intergenic 25.0%
! TATGTTGTTCATTTCATATC+AGG + chr6_2:4628950-4628969 Msa0906100:three_prime_UTR 25.0%
! TTCTTCAAAAGTGTGGAATT+TGG - chr6_2:4624267-4624286 None:intergenic 30.0%
! TCAAGTACAAATTTTGTTGG+TGG + chr6_2:4624306-4624325 Msa0906100:CDS 30.0%
!!! TTTTGTTGGTGGTTCTTTAA+AGG + chr6_2:4624317-4624336 Msa0906100:CDS 30.0%
!! TTTGTTGGTGGTTCTTTAAA+GGG + chr6_2:4624318-4624337 Msa0906100:CDS 30.0%
! AGATTTTACTTCAACTTCAC+TGG + chr6_2:4624444-4624463 Msa0906100:CDS 30.0%
!! TACTCAATTGGTTTGGTTAT+TGG + chr6_2:4624567-4624586 Msa0906100:intron 30.0%
CCGGTAATAATTGGATAAAA+TGG + chr6_2:4624713-4624732 Msa0906100:intron 30.0%
! CATTAGATTAAAGGTGTGTT+TGG - chr6_2:4624813-4624832 None:intergenic 30.0%
CCTTTAATCTAATGAAGTGT+CGG + chr6_2:4624819-4624838 Msa0906100:intron 30.0%
ATATCCGTGCATAATAGATT+TGG - chr6_2:4624933-4624952 None:intergenic 30.0%
AAATCTATTATGCACGGATA+TGG + chr6_2:4624932-4624951 Msa0906100:intron 30.0%
TCTCAAATTATTAGTGGTGT+CGG - chr6_2:4624986-4625005 None:intergenic 30.0%
AATTCAGTGTAATTATGTGC+CGG + chr6_2:4625015-4625034 Msa0906100:intron 30.0%
CTTAGGGTCTATACAAAAAT+TGG + chr6_2:4625109-4625128 Msa0906100:intron 30.0%
TGTAGGTGAGAAAGAATAAA+TGG - chr6_2:4625172-4625191 None:intergenic 30.0%
!!! CCAAAGATTGTCATTTTTGT+AGG - chr6_2:4625189-4625208 None:intergenic 30.0%
CCTACAAAAATGACAATCTT+TGG + chr6_2:4625186-4625205 Msa0906100:intron 30.0%
TCCACTTTATATAACAAGGA+AGG - chr6_2:4625278-4625297 None:intergenic 30.0%
GATCTTCTCAACATTTGAAA+AGG - chr6_2:4625340-4625359 None:intergenic 30.0%
AAATGTTGAGAAGATCACAA+TGG + chr6_2:4625344-4625363 Msa0906100:intron 30.0%
!! ACAATGGCCTTTACTTTTAT+TGG + chr6_2:4625360-4625379 Msa0906100:intron 30.0%
! AAAATAGCCTTGCTAGTTAT+TGG - chr6_2:4625640-4625659 None:intergenic 30.0%
TCAAAGTTAGCATAAGAGAT+TGG - chr6_2:4626160-4626179 None:intergenic 30.0%
TCTCTTATGCTAACTTTGAA+TGG + chr6_2:4626161-4626180 Msa0906100:intron 30.0%
ACAACTTGAATAGACTATTC+TGG - chr6_2:4626260-4626279 None:intergenic 30.0%
AACATAATGCGATCTACAAT+AGG + chr6_2:4626302-4626321 Msa0906100:intron 30.0%
ACATAATGCGATCTACAATA+GGG + chr6_2:4626303-4626322 Msa0906100:intron 30.0%
AGTTTCTTCATAAGCTATCA+TGG + chr6_2:4626443-4626462 Msa0906100:intron 30.0%
AATAAGCTGAAAACAGCTTA+TGG + chr6_2:4626478-4626497 Msa0906100:intron 30.0%
TAATCAAGTGTGAGACTATT+TGG - chr6_2:4626534-4626553 None:intergenic 30.0%
TCAAAGTCATTACAGATCTA+GGG - chr6_2:4626594-4626613 None:intergenic 30.0%
TTCAAAGTCATTACAGATCT+AGG - chr6_2:4626595-4626614 None:intergenic 30.0%
TAATGACTTTGAATCTTTCC+TGG + chr6_2:4626602-4626621 Msa0906100:intron 30.0%
AAACAATGGTCCAAAATATG+TGG - chr6_2:4626703-4626722 None:intergenic 30.0%
AGATAGCTCCAAATAAACAA+TGG - chr6_2:4626717-4626736 None:intergenic 30.0%
!! ATCTGAGTTCTTTTGATTCA+AGG + chr6_2:4626733-4626752 Msa0906100:intron 30.0%
TTGCAGCTTATCAAAGAATT+GGG + chr6_2:4627065-4627084 Msa0906100:intron 30.0%
! TACGAGCACAAAATTTTTGT+CGG + chr6_2:4627125-4627144 Msa0906100:CDS 30.0%
! CGCAAAAACTTTAAAAGATG+AGG + chr6_2:4627247-4627266 Msa0906100:CDS 30.0%
TAATGATCATTACCAACTTC+TGG - chr6_2:4627323-4627342 None:intergenic 30.0%
GATTCTTTGTTAATACACAC+GGG - chr6_2:4627762-4627781 None:intergenic 30.0%
GGATTCTTTGTTAATACACA+CGG - chr6_2:4627763-4627782 None:intergenic 30.0%
!!! CATTTTTTGCAGATGCTAAA+AGG - chr6_2:4627785-4627804 None:intergenic 30.0%
! CTTTTAGCATCTGCAAAAAA+TGG + chr6_2:4627783-4627802 Msa0906100:CDS 30.0%
AACAAAAGAAACCTGCAAAA+AGG + chr6_2:4627864-4627883 Msa0906100:CDS 30.0%
! GAGTTTGAAATGAAACTTGA+TGG + chr6_2:4627972-4627991 Msa0906100:intron 30.0%
! AGGAAGAATATTACCTTTTC+AGG - chr6_2:4628145-4628164 None:intergenic 30.0%
CTACATTGCAATTTGATTAG+TGG - chr6_2:4628185-4628204 None:intergenic 30.0%
ATCTTATAAGTAAGCGCTTA+TGG - chr6_2:4628420-4628439 None:intergenic 30.0%
TTCTCAAAGTCATAATATCG+AGG + chr6_2:4628439-4628458 Msa0906100:intron 30.0%
!! TGCATTTTTGGATGAGTTTT+TGG + chr6_2:4628620-4628639 Msa0906100:CDS 30.0%
ATTGCAATTACTTGTCAACT+TGG + chr6_2:4628837-4628856 Msa0906100:three_prime_UTR 30.0%
ATTAAAATCCTTGGACCATT+GGG - chr6_2:4629222-4629241 None:intergenic 30.0%
TATTAAAATCCTTGGACCAT+TGG - chr6_2:4629223-4629242 None:intergenic 30.0%
ATAGTGAGTCTATTGAGGAA+AGG - chr6_2:4624489-4624508 None:intergenic 35.0%
TCCTCAATAGACTCACTATT+AGG + chr6_2:4624490-4624509 Msa0906100:CDS 35.0%
TCCTAATAGTGAGTCTATTG+AGG - chr6_2:4624494-4624513 None:intergenic 35.0%
CCGACACTTCATTAGATTAA+AGG - chr6_2:4624822-4624841 None:intergenic 35.0%
TAAACTGCAATGCTAAGGAA+TGG + chr6_2:4624883-4624902 Msa0906100:intron 35.0%
AAACTGCAATGCTAAGGAAT+GGG + chr6_2:4624884-4624903 Msa0906100:intron 35.0%
GACACCAAATCTATTATGCA+CGG + chr6_2:4624926-4624945 Msa0906100:intron 35.0%
! GCCTTCCTTGTTATATAAAG+TGG + chr6_2:4625274-4625293 Msa0906100:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - chr6_2:4625722-4625741 None:intergenic 35.0%
! ATGATACTTTGGAAGTTGTG+TGG - chr6_2:4625594-4625613 None:intergenic 35.0%
AAATGCACCAATAACTAGCA+AGG + chr6_2:4625630-4625649 Msa0906100:intron 35.0%
!! TTCCTTAATTTGCGTGCAAT+TGG + chr6_2:4625696-4625715 Msa0906100:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr6_2:4625722-4625741 Msa0906100:intron 35.0%
GACAATGCTTAATAGCATGT+TGG + chr6_2:4625899-4625918 Msa0906100:intron 35.0%
!! AACTAAAATCTGGCGGATTA+TGG + chr6_2:4626077-4626096 Msa0906100:CDS 35.0%
!! ACTAAAATCTGGCGGATTAT+GGG + chr6_2:4626078-4626097 Msa0906100:CDS 35.0%
!!! AATAGGGCTCTTTTGGTTTT+AGG + chr6_2:4626319-4626338 Msa0906100:intron 35.0%
AAGCTATCATGGAAAGCTTA+TGG + chr6_2:4626454-4626473 Msa0906100:intron 35.0%
!! GATCTAGGGTCAATTTTGAT+TGG - chr6_2:4626580-4626599 None:intergenic 35.0%
!!! CATGGTTTCCCCTTTTTTAT+TGG + chr6_2:4626660-4626679 Msa0906100:intron 35.0%
CTAAGGAATGAAAGTTTGCA+TGG - chr6_2:4626810-4626829 None:intergenic 35.0%
TTTGATAAGCTGCAAGAAAC+GGG - chr6_2:4627060-4627079 None:intergenic 35.0%
CTTTGATAAGCTGCAAGAAA+CGG - chr6_2:4627061-4627080 None:intergenic 35.0%
CTTGCAGCTTATCAAAGAAT+TGG + chr6_2:4627064-4627083 Msa0906100:intron 35.0%
TGCAGCTTATCAAAGAATTG+GGG + chr6_2:4627066-4627085 Msa0906100:intron 35.0%
! GCGGAAATTTTCTTGAAAAC+GGG - chr6_2:4627151-4627170 None:intergenic 35.0%
! CGCGGAAATTTTCTTGAAAA+CGG - chr6_2:4627152-4627171 None:intergenic 35.0%
! AACCTTTTGCTCTATTTCAC+CGG - chr6_2:4627291-4627310 None:intergenic 35.0%
! CTTATTTGCACAAGTTTTCC+AGG + chr6_2:4627471-4627490 Msa0906100:intron 35.0%
! ACTGTTTTCATAAGCTATCC+TGG - chr6_2:4627492-4627511 None:intergenic 35.0%
TCTCATTCGCTTATTTCCTT+AGG + chr6_2:4627645-4627664 Msa0906100:intron 35.0%
TCGCTTATTTCCTTAGGAAT+TGG + chr6_2:4627651-4627670 Msa0906100:intron 35.0%
CGCTTATTTCCTTAGGAATT+GGG + chr6_2:4627652-4627671 Msa0906100:intron 35.0%
TTCAAGGACATTATTGGTGA+CGG + chr6_2:4627707-4627726 Msa0906100:CDS 35.0%
AGCATCTGCAAAAAATGGTT+TGG + chr6_2:4627788-4627807 Msa0906100:CDS 35.0%
GCTGTAAAGATTCTTAGCAA+GGG + chr6_2:4627810-4627829 Msa0906100:CDS 35.0%
TTGTCAATTACAGGTTCATC+AGG - chr6_2:4627846-4627865 None:intergenic 35.0%
! TCTTGGTCCATCTAATCTTT+TGG + chr6_2:4628039-4628058 Msa0906100:CDS 35.0%
TTAGGCTCCAAAAGATTAGA+TGG - chr6_2:4628049-4628068 None:intergenic 35.0%
ATTTGTTCAAAGCTGGCATT+AGG - chr6_2:4628067-4628086 None:intergenic 35.0%
CACTATTTGCATAGCTATCA+TGG - chr6_2:4628303-4628322 None:intergenic 35.0%
!! GCATTGTTTTACGATGATTC+AGG + chr6_2:4628488-4628507 Msa0906100:intron 35.0%
GATGATTCAGGTAAAAGACT+GGG + chr6_2:4628500-4628519 Msa0906100:intron 35.0%
CTCATCCAAAAATGCAAATG+CGG - chr6_2:4628616-4628635 None:intergenic 35.0%
AAACTCATCAAGAGACGATA+AGG - chr6_2:4628739-4628758 None:intergenic 35.0%
! ATCGTCTCTTGATGAGTTTT+TGG + chr6_2:4628740-4628759 Msa0906100:CDS 35.0%
CTGGTTAGAAAGAACACTAT+TGG + chr6_2:4629307-4629326 Msa0906100:three_prime_UTR 35.0%
AGAACACTATTGGAAATTGC+AGG + chr6_2:4629317-4629336 Msa0906100:three_prime_UTR 35.0%
!! ACACGTGGAATATTGGTCTT+AGG - chr6_2:4624105-4624124 None:intergenic 40.0%
!! GGTTTTGACACGTGGAATAT+TGG - chr6_2:4624112-4624131 None:intergenic 40.0%
!!! TTGGATATGGTTTTGACACG+TGG - chr6_2:4624120-4624139 None:intergenic 40.0%
TAGGTACATACATGGAGTGA+AGG - chr6_2:4624158-4624177 None:intergenic 40.0%
GATGTGGTTCTTCAAAAGTG+TGG - chr6_2:4624274-4624293 None:intergenic 40.0%
TGTTGTTCCAGAAGAACTTG+TGG - chr6_2:4624409-4624428 None:intergenic 40.0%
!!! ACTGGTTTTCCTTTTCCACT+TGG + chr6_2:4624462-4624481 Msa0906100:CDS 40.0%
TAGACTCACTATTAGGACTG+AGG + chr6_2:4624497-4624516 Msa0906100:CDS 40.0%
GTCGATGTCATGTTAGTGTT+TGG + chr6_2:4624760-4624779 Msa0906100:intron 40.0%
ATTATGCACGGATATGGACA+TGG + chr6_2:4624938-4624957 Msa0906100:intron 40.0%
GTGCCCATAGAATTCAGTAA+AGG - chr6_2:4625249-4625268 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr6_2:4625726-4625745 None:intergenic 40.0%
AGCCAATTGCACGCAAATTA+AGG - chr6_2:4625701-4625720 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr6_2:4625726-4625745 Msa0906100:intron 40.0%
TTAATCATTGTAGGCCGTGA+AGG + chr6_2:4625976-4625995 Msa0906100:intron 40.0%
TAATCATTGTAGGCCGTGAA+GGG + chr6_2:4625977-4625996 Msa0906100:intron 40.0%
TAGCCATATACAACCCTTCA+CGG - chr6_2:4625993-4626012 None:intergenic 40.0%
TCCAACTGATGAGTGTATTC+AGG + chr6_2:4626117-4626136 Msa0906100:CDS 40.0%
ACCTGAATACACTCATCAGT+TGG - chr6_2:4626121-4626140 None:intergenic 40.0%
! GATCTACAATAGGGCTCTTT+TGG + chr6_2:4626312-4626331 Msa0906100:intron 40.0%
CATTCCTTAGTAATGCTGCA+AGG + chr6_2:4626820-4626839 Msa0906100:intron 40.0%
! GCACTGTCACTTCATATTGA+AGG + chr6_2:4626874-4626893 Msa0906100:intron 40.0%
! CTTCATATTGAAGGTGTGTC+CGG + chr6_2:4626883-4626902 Msa0906100:intron 40.0%
! GTTTGTGTTTTCACGAGTGT+TGG + chr6_2:4626959-4626978 Msa0906100:intron 40.0%
GCAGCTTATCAAAGAATTGG+GGG + chr6_2:4627067-4627086 Msa0906100:intron 40.0%
TGTGCTCGTAAGCAAAAGTA+GGG - chr6_2:4627115-4627134 None:intergenic 40.0%
TTGTGCTCGTAAGCAAAAGT+AGG - chr6_2:4627116-4627135 None:intergenic 40.0%
ATGAGGATTTATCCACTCCT+TGG + chr6_2:4627264-4627283 Msa0906100:CDS 40.0%
TGAGGATTTATCCACTCCTT+GGG + chr6_2:4627265-4627284 Msa0906100:CDS 40.0%
TAGAAAGCAACCTCCACATA+TGG - chr6_2:4627678-4627697 None:intergenic 40.0%
ATAATGTCCTTGAAGGCTTG+TGG - chr6_2:4627701-4627720 None:intergenic 40.0%
CAAGCCTTCAAGGACATTAT+TGG + chr6_2:4627701-4627720 Msa0906100:CDS 40.0%
GTCACCAATAATGTCCTTGA+AGG - chr6_2:4627708-4627727 None:intergenic 40.0%
TCTTTGTTAATACACACGGG+TGG - chr6_2:4627759-4627778 None:intergenic 40.0%
GGCTGTAAAGATTCTTAGCA+AGG + chr6_2:4627809-4627828 Msa0906100:CDS 40.0%
GATTCTTAGCAAGGGAAAAG+AGG + chr6_2:4627818-4627837 Msa0906100:CDS 40.0%
AAGAAACCTGCAAAAAGGTC+AGG + chr6_2:4627869-4627888 Msa0906100:intron 40.0%
AGAAACCTGCAAAAAGGTCA+GGG + chr6_2:4627870-4627889 Msa0906100:intron 40.0%
AAGTGAGTTGCGTACTTTAG+AGG + chr6_2:4627930-4627949 Msa0906100:intron 40.0%
! ACTTGATGGTTGTAATCTGC+AGG + chr6_2:4627986-4628005 Msa0906100:intron 40.0%
ATGGTTGTAATCTGCAGGAT+GGG + chr6_2:4627991-4628010 Msa0906100:intron 40.0%
CTCTGACATTTGTTCAAAGC+TGG - chr6_2:4628074-4628093 None:intergenic 40.0%
CTTCAGCAAAGTTCCTGAAA+AGG + chr6_2:4628129-4628148 Msa0906100:CDS 40.0%
TGGAAATGTAGCGATACAAC+AGG - chr6_2:4628165-4628184 None:intergenic 40.0%
ACAGGCCCTAACACTATATT+AGG - chr6_2:4628214-4628233 None:intergenic 40.0%
ATATAGTGTTAGGGCCTGTT+TGG + chr6_2:4628215-4628234 Msa0906100:intron 40.0%
TAGCTATCATGGAGAGCTTA+TGG - chr6_2:4628292-4628311 None:intergenic 40.0%
CGATGATTCAGGTAAAAGAC+TGG + chr6_2:4628499-4628518 Msa0906100:intron 40.0%
TCAGACCTACTTGCGTTTAT+TGG - chr6_2:4628585-4628604 None:intergenic 40.0%
GAAAACAGAAGGGAAAGTGA+AGG - chr6_2:4628666-4628685 None:intergenic 40.0%
GATAAGGTTCTCATGTCATC+AGG - chr6_2:4628723-4628742 None:intergenic 40.0%
!!! GATGAGTTTTTGGTCTCAGT+TGG + chr6_2:4628750-4628769 Msa0906100:CDS 40.0%
TGAAGAAAACTGTTGCAGGA+AGG + chr6_2:4628778-4628797 Msa0906100:CDS 40.0%
! ACTGTCTAGAGTTCTGACTT+TGG - chr6_2:4629019-4629038 None:intergenic 40.0%
TCATGGTATATGATCTCCCT+TGG + chr6_2:4629098-4629117 Msa0906100:three_prime_UTR 40.0%
TTGGAAATTGCAGGAGCAAT+TGG + chr6_2:4629326-4629345 Msa0906100:three_prime_UTR 40.0%
! AAAGGTACGTTTCTGAGTTG+CGG - chr6_2:4629372-4629391 None:intergenic 40.0%
AGGAAAGGACCAAGTGGAAA+AGG - chr6_2:4624474-4624493 None:intergenic 45.0%
CTATTGAGGAAAGGACCAAG+TGG - chr6_2:4624480-4624499 None:intergenic 45.0%
TTGTATAGACCCTAAGCCCA+CGG - chr6_2:4625105-4625124 None:intergenic 45.0%
TTACCTGTCAATGTCGTGTC+TGG - chr6_2:4625442-4625461 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr6_2:4625725-4625744 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr6_2:4625725-4625744 Msa0906100:intron 45.0%
TACATGTGTCAGTGTCGTGT+TGG + chr6_2:4625790-4625809 Msa0906100:intron 45.0%
ATGGCTATTCGAACAAGAGC+AGG + chr6_2:4626006-4626025 Msa0906100:CDS 45.0%
TTCGAACAAGAGCAGGCATT+AGG + chr6_2:4626013-4626032 Msa0906100:CDS 45.0%
CACTCATCAGTTGGAGCTAT+AGG - chr6_2:4626112-4626131 None:intergenic 45.0%
ATCTTTCCTGGACACTTCCA+TGG + chr6_2:4626614-4626633 Msa0906100:intron 45.0%
ATGTGATGTAAAGCTCCTGC+CGG - chr6_2:4626643-4626662 None:intergenic 45.0%
CAAAGCTCTTGATCAGGTGA+TGG - chr6_2:4626852-4626871 None:intergenic 45.0%
GTGCAACAAAGCTCTTGATC+AGG - chr6_2:4626858-4626877 None:intergenic 45.0%
AACATGAACTGACGCGTAGA+CGG - chr6_2:4626935-4626954 None:intergenic 45.0%
TACGCGTCAGTTCATGTTCA+GGG + chr6_2:4626937-4626956 Msa0906100:CDS 45.0%
!!! AGTGTTGGTTTTGTGAGCAC+AGG + chr6_2:4626974-4626993 Msa0906100:intron 45.0%
TATCAAAGAATTGGGGGCTC+CGG + chr6_2:4627073-4627092 Msa0906100:CDS 45.0%
AAGAAAATTTCCGCGTGCTC+AGG + chr6_2:4627157-4627176 Msa0906100:CDS 45.0%
! GTTCTAAGCTCACCAGAAGT+TGG + chr6_2:4627308-4627327 Msa0906100:CDS 45.0%
CACATATGGCCCAATTCCTA+AGG - chr6_2:4627664-4627683 None:intergenic 45.0%
CTTAGGAATTGGGCCATATG+TGG + chr6_2:4627662-4627681 Msa0906100:intron 45.0%
CTTTCTACCACAAGCCTTCA+AGG + chr6_2:4627691-4627710 Msa0906100:CDS 45.0%
GATGGTTGTAATCTGCAGGA+TGG + chr6_2:4627990-4628009 Msa0906100:intron 45.0%
ATCTGCAGGATGGGAAAGAA+TGG + chr6_2:4628000-4628019 Msa0906100:intron 45.0%
TTCACCTATCGTCAAGACTC+TGG + chr6_2:4628105-4628124 Msa0906100:CDS 45.0%
AAGACCAGAGTCTTGACGAT+AGG - chr6_2:4628112-4628131 None:intergenic 45.0%
TTGACAGTATTTCGCGCGAT+TGG + chr6_2:4628523-4628542 Msa0906100:CDS 45.0%
CCTACTTGCGTTTATTGGTG+CGG - chr6_2:4628580-4628599 None:intergenic 45.0%
! TCGTGCCGCATTTGCATTTT+TGG + chr6_2:4628608-4628627 Msa0906100:CDS 45.0%
!! TGGATGAGTTTTTGGACGAC+CGG + chr6_2:4628628-4628647 Msa0906100:CDS 45.0%
GTCATCAGGAGGAAAGTAAC+TGG - chr6_2:4628709-4628728 None:intergenic 45.0%
AAGGTTCTCATGTCATCAGG+AGG - chr6_2:4628720-4628739 None:intergenic 45.0%
GCTGTGAAGAAAACTGTTGC+AGG + chr6_2:4628774-4628793 Msa0906100:CDS 45.0%
! GTCTAGAGTTCTGACTTTGG+TGG - chr6_2:4629016-4629035 None:intergenic 45.0%
TATATGATCTCCCTTGGTCG+TGG + chr6_2:4629104-4629123 Msa0906100:three_prime_UTR 45.0%
CTCATAGAATCCACGACCAA+GGG - chr6_2:4629117-4629136 None:intergenic 45.0%
ACTCATAGAATCCACGACCA+AGG - chr6_2:4629118-4629137 None:intergenic 45.0%
CTTTCTAACCAGTACTCCTG+TGG - chr6_2:4629299-4629318 None:intergenic 45.0%
GCAACTCAGAAACGTACCTT+TGG + chr6_2:4629371-4629390 Msa0906100:three_prime_UTR 45.0%
GCTTCTGCCACAAGTTCTTC+TGG + chr6_2:4624399-4624418 Msa0906100:CDS 50.0%
GGAACAACAAGCAGCGCTAA+TGG + chr6_2:4624420-4624439 Msa0906100:CDS 50.0%
!! TAATCCAGAGGAGTGTCCGT+GGG + chr6_2:4625086-4625105 Msa0906100:intron 50.0%
TGTCGAACACCGACACATGT+TGG + chr6_2:4625813-4625832 Msa0906100:intron 50.0%
! GTCTGGAGTCCAACATGTGT+CGG - chr6_2:4625825-4625844 None:intergenic 50.0%
ACACATGTTGGACTCCAGAC+AGG + chr6_2:4625825-4625844 Msa0906100:intron 50.0%
AGGCCGTGAAGGGTTGTATA+TGG + chr6_2:4625987-4626006 Msa0906100:intron 50.0%
TTTCCTGGACACTTCCATGG+CGG + chr6_2:4626617-4626636 Msa0906100:intron 50.0%
GGCAGGAGCTTTACATCACA+TGG + chr6_2:4626642-4626661 Msa0906100:intron 50.0%
CCTGCCTTGCAGCATTACTA+AGG - chr6_2:4626827-4626846 None:intergenic 50.0%
CCTTAGTAATGCTGCAAGGC+AGG + chr6_2:4626824-4626843 Msa0906100:intron 50.0%
!! GGTATCGGTCTGTCAAACAC+CGG - chr6_2:4626905-4626924 None:intergenic 50.0%
!! GTAGACGGTGTTGGTGGTAT+CGG - chr6_2:4626920-4626939 None:intergenic 50.0%
CTACGCGTCAGTTCATGTTC+AGG + chr6_2:4626936-4626955 Msa0906100:CDS 50.0%
GGGAGGACGATGTATTCAAC+CGG - chr6_2:4627095-4627114 None:intergenic 50.0%
GCTCGTAAGCAAAAGTAGGG+AGG - chr6_2:4627112-4627131 None:intergenic 50.0%
AATTTCCGCGTGCTCAGGTA+TGG + chr6_2:4627162-4627181 Msa0906100:CDS 50.0%
ATTTCCGCGTGCTCAGGTAT+GGG + chr6_2:4627163-4627182 Msa0906100:CDS 50.0%
AATGGCCAACTCCATTGCCT+CGG - chr6_2:4627194-4627213 None:intergenic 50.0%
GATTTATCCACTCCTTGGGC+CGG + chr6_2:4627269-4627288 Msa0906100:CDS 50.0%
GGCCGGTGAAATAGAGCAAA+AGG + chr6_2:4627286-4627305 Msa0906100:CDS 50.0%
AGGAATTGGGCCATATGTGG+AGG + chr6_2:4627665-4627684 Msa0906100:intron 50.0%
ATACACACGGGTGGCTGTTT+CGG - chr6_2:4627750-4627769 None:intergenic 50.0%
CCGCACCAATAAACGCAAGT+AGG + chr6_2:4628577-4628596 Msa0906100:CDS 50.0%
GTGAAGGCCAAGCATCATAC+CGG - chr6_2:4628650-4628669 None:intergenic 50.0%
AATGCGCACATCGTCATCTG+AGG - chr6_2:4629150-4629169 None:intergenic 50.0%
GTTAACAGTCCCCATTGCGA+GGG - chr6_2:4629174-4629193 None:intergenic 50.0%
AGTTAACAGTCCCCATTGCG+AGG - chr6_2:4629175-4629194 None:intergenic 50.0%
GGGACTGTTAACTTCAAGCC+AGG + chr6_2:4629182-4629201 Msa0906100:three_prime_UTR 50.0%
GACTGTTGCGTCTTTCCCAA+TGG + chr6_2:4629204-4629223 Msa0906100:three_prime_UTR 50.0%
GCAGGTTTGGATACGACTAC+TGG + chr6_2:4629268-4629287 Msa0906100:three_prime_UTR 50.0%
! ATTATGTGCCGGCGTCGTGT+CGG + chr6_2:4625026-4625045 Msa0906100:intron 55.0%
ACACAACACGTGTCCGACAC+CGG + chr6_2:4625055-4625074 Msa0906100:intron 55.0%
GATTAGACGTGTCCCGGTGT+CGG - chr6_2:4625071-4625090 None:intergenic 55.0%
! CCTCTGGATTAGACGTGTCC+CGG - chr6_2:4625077-4625096 None:intergenic 55.0%
!! CTAATCCAGAGGAGTGTCCG+TGG + chr6_2:4625085-4625104 Msa0906100:intron 55.0%
GCACCAGACACGACATTGAC+AGG + chr6_2:4625436-4625455 Msa0906100:intron 55.0%
ATGTTGGACTCCAGACAGGC+AGG + chr6_2:4625829-4625848 Msa0906100:intron 55.0%
TGAAGATGTGCCTGCCTGTC+TGG - chr6_2:4625842-4625861 None:intergenic 55.0%
AACTGACGCGTAGACGGTGT+TGG - chr6_2:4626929-4626948 None:intergenic 55.0%
TATTTCACCGGCCCAAGGAG+TGG - chr6_2:4627279-4627298 None:intergenic 55.0%
TGCTCTATTTCACCGGCCCA+AGG - chr6_2:4627284-4627303 None:intergenic 55.0%
! ACGAGCCCTGACCTTTTTGC+AGG - chr6_2:4627878-4627897 None:intergenic 55.0%
TTGGTGCGGAGAAGTGAGCT+GGG - chr6_2:4628566-4628585 None:intergenic 55.0%
ATTGGTGCGGAGAAGTGAGC+TGG - chr6_2:4628567-4628586 None:intergenic 55.0%
TGGACGACCGGTATGATGCT+TGG + chr6_2:4628640-4628659 Msa0906100:CDS 55.0%
TGTGCGCATTTCCCTCGCAA+TGG + chr6_2:4629160-4629179 Msa0906100:three_prime_UTR 55.0%
GTGCGCATTTCCCTCGCAAT+GGG + chr6_2:4629161-4629180 Msa0906100:three_prime_UTR 55.0%
TGCGCATTTCCCTCGCAATG+GGG + chr6_2:4629162-4629181 Msa0906100:three_prime_UTR 55.0%
TGGGAAAGACGCAACAGTCC+TGG - chr6_2:4629203-4629222 None:intergenic 55.0%
GCGTCTTTCCCAATGGTCCA+AGG + chr6_2:4629211-4629230 Msa0906100:three_prime_UTR 55.0%
GTCTGACACATGCGCAGGTT+TGG + chr6_2:4629255-4629274 Msa0906100:three_prime_UTR 55.0%
ACGACTACTGGACTTGCCAC+AGG + chr6_2:4629280-4629299 Msa0906100:three_prime_UTR 55.0%
! TGGACTTGCCACAGGAGTAC+TGG + chr6_2:4629288-4629307 Msa0906100:three_prime_UTR 55.0%
!! GTTGCGGTGTCGATGATGAG+CGG - chr6_2:4629356-4629375 None:intergenic 55.0%
GTACCTTTGGCCGTTACGCA+CGG + chr6_2:4629384-4629403 Msa0906100:three_prime_UTR 55.0%
TACCTTTGGCCGTTACGCAC+GGG + chr6_2:4629385-4629404 Msa0906100:three_prime_UTR 55.0%
CACAACACGTGTCCGACACC+GGG + chr6_2:4625056-4625075 Msa0906100:intron 60.0%
CCGGGACACGTCTAATCCAG+AGG + chr6_2:4625074-4625093 Msa0906100:intron 60.0%
TAAGCCCACGGACACTCCTC+TGG - chr6_2:4625093-4625112 None:intergenic 60.0%
!! AGAGGAGTGTCCGTGGGCTT+AGG + chr6_2:4625092-4625111 Msa0906100:intron 60.0%
!! GAGGAGTGTCCGTGGGCTTA+GGG + chr6_2:4625093-4625112 Msa0906100:intron 60.0%
! TGACGCGTAGACGGTGTTGG+TGG - chr6_2:4626926-4626945 None:intergenic 60.0%
! TATGGGTGGCACCGAGGCAA+TGG + chr6_2:4627180-4627199 Msa0906100:CDS 60.0%
! TGGCACCGAGGCAATGGAGT+TGG + chr6_2:4627186-4627205 Msa0906100:CDS 60.0%
TCAGCGTCTGACACATGCGC+AGG + chr6_2:4629250-4629269 Msa0906100:three_prime_UTR 60.0%
GTCCAACACCGACACGACGC+CGG - chr6_2:4625037-4625056 None:intergenic 65.0%
CTGGACACTTCCATGGCGGC+CGG + chr6_2:4626621-4626640 Msa0906100:intron 65.0%
TCCGCGTGCTCAGGTATGGG+TGG + chr6_2:4627166-4627185 Msa0906100:CDS 65.0%
GCCACCCATACCTGAGCACG+CGG - chr6_2:4627170-4627189 None:intergenic 65.0%
CTCAGGTATGGGTGGCACCG+AGG + chr6_2:4627174-4627193 Msa0906100:CDS 65.0%
CACCCGTGCGTAACGGCCAA+AGG - chr6_2:4629390-4629409 None:intergenic 65.0%
! TGCCGGCGTCGTGTCGGTGT+TGG + chr6_2:4625032-4625051 Msa0906100:intron 70.0%
!! CGGCCGCCATGGAAGTGTCC+AGG - chr6_2:4626623-4626642 None:intergenic 70.0%
ACACTTCCATGGCGGCCGGC+AGG + chr6_2:4626625-4626644 Msa0906100:intron 70.0%
AAAGCTCCTGCCGGCCGCCA+TGG - chr6_2:4626634-4626653 None:intergenic 70.0%
TGGCCGTTACGCACGGGTGC+TGG + chr6_2:4629391-4629410 Msa0906100:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 4624097 4629415 4624097 ID=Msa0906100;Name=Msa0906100
chr6_2 mRNA 4624097 4629415 4624097 ID=Msa0906100-mRNA-1;Parent=Msa0906100;Name=Msa0906100-mRNA-1;_AED=0.15;_eAED=0.15;_QI=140|0.83|0.85|1|1|1|7|606|471
chr6_2 exon 4624097 4624518 4624097 ID=Msa0906100-mRNA-1:exon:1321;Parent=Msa0906100-mRNA-1
chr6_2 exon 4625989 4626138 4625989 ID=Msa0906100-mRNA-1:exon:1322;Parent=Msa0906100-mRNA-1
chr6_2 exon 4626896 4626958 4626896 ID=Msa0906100-mRNA-1:exon:1323;Parent=Msa0906100-mRNA-1
chr6_2 exon 4627071 4627329 4627071 ID=Msa0906100-mRNA-1:exon:1324;Parent=Msa0906100-mRNA-1
chr6_2 exon 4627667 4627885 4627667 ID=Msa0906100-mRNA-1:exon:1325;Parent=Msa0906100-mRNA-1
chr6_2 exon 4628008 4628150 4628008 ID=Msa0906100-mRNA-1:exon:1326;Parent=Msa0906100-mRNA-1
chr6_2 exon 4628510 4629415 4628510 ID=Msa0906100-mRNA-1:exon:1327;Parent=Msa0906100-mRNA-1
chr6_2 five_prime_UTR 4624097 4624236 4624097 ID=Msa0906100-mRNA-1:five_prime_utr;Parent=Msa0906100-mRNA-1
chr6_2 CDS 4624237 4624518 4624237 ID=Msa0906100-mRNA-1:cds;Parent=Msa0906100-mRNA-1
chr6_2 CDS 4625989 4626138 4625989 ID=Msa0906100-mRNA-1:cds;Parent=Msa0906100-mRNA-1
chr6_2 CDS 4626896 4626958 4626896 ID=Msa0906100-mRNA-1:cds;Parent=Msa0906100-mRNA-1
chr6_2 CDS 4627071 4627329 4627071 ID=Msa0906100-mRNA-1:cds;Parent=Msa0906100-mRNA-1
chr6_2 CDS 4627667 4627885 4627667 ID=Msa0906100-mRNA-1:cds;Parent=Msa0906100-mRNA-1
chr6_2 CDS 4628008 4628150 4628008 ID=Msa0906100-mRNA-1:cds;Parent=Msa0906100-mRNA-1
chr6_2 CDS 4628510 4628809 4628510 ID=Msa0906100-mRNA-1:cds;Parent=Msa0906100-mRNA-1
chr6_2 three_prime_UTR 4628810 4629415 4628810 ID=Msa0906100-mRNA-1:three_prime_utr;Parent=Msa0906100-mRNA-1
Gene Sequence

>Msa0906100

ATGGTAGCAGCAATTGCTGTTTCTTCACCAAATTCCACACTTTTGAAGAACCACATCAATTTAAAACATTCAAGTACAAATTTTGTTGGTGGTTCTTTAAAGGGTCTTTGCTTGCATGTGAAACAAAGACAACAAAGAAGAGATTCATTCAATTTGGTTGTTGCTTCTGCCACAAGTTCTTCTGGAACAACAAGCAGCGCTAATGGAAGATTTTACTTCAACTTCACTGGTTTTCCTTTTCCACTTGGTCCTTTCCTCAATAGACTCACTATTAGGACTGAGGCCGTGAAGGGTTGTATATGGCTATTCGAACAAGAGCAGGCATTAGGCTTCAGCAGTGTTTCAACAAACATTAGAATGACAGTTATTAAACTAAAATCTGGCGGATTATGGGTTCATGCACCTATAGCTCCAACTGATGAGTGTATTCAGGTGTGTCCGGTGTTTGACAGACCGATACCACCAACACCGTCTACGCGTCAGTTCATGTTCAGGCTTATCAAAGAATTGGGGGCTCCGGTTGAATACATCGTCCTCCCTACTTTTGCTTACGAGCACAAAATTTTTGTCGGCCCGTTTTCAAGAAAATTTCCGCGTGCTCAGGTATGGGTGGCACCGAGGCAATGGAGTTGGCCATTGAACTTACCTTTAGAATTCTTTGGCATTTTTCGCGCAAAAACTTTAAAAGATGAGGATTTATCCACTCCTTGGGCCGGTGAAATAGAGCAAAAGGTTCTAAGCTCACCAGAAGTTGGAATTGGGCCATATGTGGAGGTTGCTTTCTACCACAAGCCTTCAAGGACATTATTGGTGACGGATGCTGTTATTCTTGTACCGAAACAGCCACCCGTGTGTATTAACAAAGAATCCCTTTTAGCATCTGCAAAAAATGGTTTGGCTGTAAAGATTCTTAGCAAGGGAAAAGAGGTGCCTGATGAACCTGTAATTGACAACAAAAGAAACCTGCAAAAAGGATGGGAAAGAATGGTTCTACAAATTTTGTTTCTTGGTCCATCTAATCTTTTGGAGCCTAATGCCAGCTTTGAACAAATGTCAGAGAAGTTGATTGTTTCACCTATCGTCAAGACTCTGGTCTTCAGCAAAGTTCCTGAAAAGGTAAAAGACTGGGTTGACAGTATTTCGCGCGATTGGAAGTTTAGAAGAATTATCCCAGCTCACTTCTCCGCACCAATAAACGCAAGTAGGTCTGATTTTCGTGCCGCATTTGCATTTTTGGATGAGTTTTTGGACGACCGGTATGATGCTTGGCCTTCACTTTCCCTTCTGTTTTCATCAATCAAAAGAAAAGCAGCCAGTTACTTTCCTCCTGATGACATGAGAACCTTATCGTCTCTTGATGAGTTTTTGGTCTCAGTTGGAGCTGTGAAGAAAACTGTTGCAGGAAGGAAGAGATGA

Protein sequence

>Msa0906100

MVAAIAVSSPNSTLLKNHINLKHSSTNFVGGSLKGLCLHVKQRQQRRDSFNLVVASATSSSGTTSSANGRFYFNFTGFPFPLGPFLNRLTIRTEAVKGCIWLFEQEQALGFSSVSTNIRMTVIKLKSGGLWVHAPIAPTDECIQVCPVFDRPIPPTPSTRQFMFRLIKELGAPVEYIVLPTFAYEHKIFVGPFSRKFPRAQVWVAPRQWSWPLNLPLEFFGIFRAKTLKDEDLSTPWAGEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVILVPKQPPVCINKESLLASAKNGLAVKILSKGKEVPDEPVIDNKRNLQKGWERMVLQILFLGPSNLLEPNASFEQMSEKLIVSPIVKTLVFSKVPEKVKDWVDSISRDWKFRRIIPAHFSAPINASRSDFRAAFAFLDEFLDDRYDAWPSLSLLFSSIKRKAASYFPPDDMRTLSSLDEFLVSVGAVKKTVAGRKR*