AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0559280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0559280 MtrunA17_Chr4g0049321 99.157 356 3 0 1 356 1 356 0.0 716
Msa0559280 MtrunA17_Chr5g0400691 79.888 358 70 1 1 356 1 358 0.0 590
Msa0559280 MtrunA17_Chr4g0060781 64.762 315 109 1 44 356 89 403 7.51e-142 408
Msa0559280 MtrunA17_Chr8g0360501 64.744 312 109 1 43 353 29 340 7.71e-140 400
Msa0559280 MtrunA17_Chr8g0381211 67.857 56 18 0 278 333 425 480 7.58e-19 87.4
Msa0559280 MtrunA17_Chr5g0399111 24.125 257 162 10 46 283 39 281 1.31e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0559280 AT5G09660.1 85.955 356 48 1 1 356 1 354 0.0 602
Msa0559280 AT5G09660.5 85.674 356 48 2 1 356 1 353 0.0 596
Msa0559280 AT2G22780.1 80.342 351 67 1 8 356 4 354 0.0 577
Msa0559280 AT5G09660.2 87.651 332 41 0 25 356 2 333 0.0 577
Msa0559280 AT5G09660.4 85.762 302 41 1 1 302 1 300 0.0 507
Msa0559280 AT5G09660.3 87.770 278 34 0 25 302 2 279 3.43e-172 483
Msa0559280 AT1G53240.1 64.873 316 111 0 38 353 23 338 5.24e-146 416
Msa0559280 AT3G15020.1 65.595 311 107 0 43 353 28 338 2.62e-144 412
Msa0559280 AT3G47520.1 63.226 310 112 1 44 351 82 391 3.84e-136 394
Msa0559280 AT3G15020.2 67.153 274 90 0 43 316 28 301 6.05e-128 369

Find 136 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACATATATGTCAATTTAT+TGG 0.193184 4_1:+58489221 Msa0559280:five_prime_UTR
TGAAGAGTTATAGTATATTA+TGG 0.203084 4_1:-58489342 None:intergenic
TGCATGTGCTTCCATTTCTA+TGG 0.218870 4_1:-58489397 None:intergenic
TAATGAATTCTACTCCCTTC+TGG 0.272096 4_1:-58491874 None:intergenic
TCTTCACCCTTCAAATTTCC+AGG 0.294139 4_1:+58489455 Msa0559280:CDS
TCTCAGAATTCTTAACCATT+AGG 0.312533 4_1:-58489091 None:intergenic
TGAACATTCATAAAATTATT+CGG 0.313074 4_1:-58492223 None:intergenic
ATTGCACAATGTGAAGTAAA+AGG 0.329867 4_1:-58489068 None:intergenic
GAATCCAGGTGCCCCACCTT+TGG 0.330579 4_1:-58489919 None:intergenic
GGATTCAAAGTAGCAGTATT+GGG 0.336673 4_1:+58489936 Msa0559280:CDS
AAGATAAGGGTTCAGAAAAC+TGG 0.339497 4_1:+58489142 Msa0559280:five_prime_UTR
CTGGTCATTCCAGGTTTCCT+TGG 0.341674 4_1:-58490571 None:intergenic
GAAGAGTTATAGTATATTAT+GGG 0.343479 4_1:-58489341 None:intergenic
CTGACAAATCGCATTCAAAA+TGG 0.343591 4_1:+58491121 Msa0559280:CDS
CTCTTGCAGGCAGAGGTACT+TGG 0.352335 4_1:+58490889 Msa0559280:intron
CAGAGATTCTTGCAATCCTT+TGG 0.365549 4_1:-58489428 None:intergenic
AATGCGATTTGTCAGGTATT+CGG 0.372408 4_1:-58491113 None:intergenic
TTCACATTGTGCAATCCTAA+TGG 0.381318 4_1:+58489076 Msa0559280:five_prime_UTR
AAGTCGTCCCTGGTCATTCC+AGG 0.386910 4_1:-58490580 None:intergenic
CTGAGAGCCACATTCATTTG+AGG 0.386969 4_1:+58489108 Msa0559280:five_prime_UTR
ATCAAGTTGACAATCGCATT+GGG 0.397138 4_1:-58490661 None:intergenic
TTCTTCTGCAGTGAAGCTAC+TGG 0.398268 4_1:-58491089 None:intergenic
TCTCAAGTAATCCATAGAAA+TGG 0.419248 4_1:+58489386 Msa0559280:exon
GGATTAAACAAAATTTGATC+TGG 0.420307 4_1:-58492121 None:intergenic
GCCACATTCATTTGAGGTCT+AGG 0.421580 4_1:+58489114 Msa0559280:five_prime_UTR
TTCATACTACAGGCTAAAGC+TGG 0.423720 4_1:+58491320 Msa0559280:intron
TTGAAGACCTCAGCAGCAAT+TGG 0.432472 4_1:-58490709 None:intergenic
GATTCTTGCAATCCTTTGGT+TGG 0.437303 4_1:-58489424 None:intergenic
AAAATATACTAATTGAGAAT+AGG 0.443280 4_1:-58489249 None:intergenic
GTGTGCTTATGTTGATTCTC+AGG 0.445825 4_1:+58491536 Msa0559280:CDS
ACTGGAACATCAACTTCTCT+TGG 0.447506 4_1:-58490919 None:intergenic
GACTTATTTAAGATAAATGC+TGG 0.454140 4_1:+58490598 Msa0559280:CDS
CTTGGCAATTCCTTCGCAAA+GGG 0.459632 4_1:-58490632 None:intergenic
AGAGCCAAAGGTGGGGCACC+TGG 0.462007 4_1:+58489915 Msa0559280:CDS
TGGATTCAAAGTAGCAGTAT+TGG 0.462278 4_1:+58489935 Msa0559280:CDS
CACTTTCAGAATATATTACA+AGG 0.464240 4_1:-58492073 None:intergenic
CACTGTGCCAATTGCTGCTG+AGG 0.465597 4_1:+58490702 Msa0559280:CDS
GCTGGTGTGCCAAGGAAACC+TGG 0.468289 4_1:+58490562 Msa0559280:CDS
GTAACTCCTAAAAGTCGCTT+TGG 0.469912 4_1:-58490751 None:intergenic
CCAGTGGTGGGAGGTCATGC+AGG 0.477926 4_1:+58490937 Msa0559280:CDS
CAGCTTCTCCTTTCAAGCCA+TGG 0.480053 4_1:-58491503 None:intergenic
TCATGCCTCCATGGCTTGAA+AGG 0.483570 4_1:+58491495 Msa0559280:CDS
CGAACCTTGGTTGCAAAGAA+AGG 0.486614 4_1:-58491658 None:intergenic
CATGGCTTGAAAGGAGAAGC+TGG 0.494384 4_1:+58491504 Msa0559280:CDS
TCTTCTGCAGTGAAGCTACT+GGG 0.496923 4_1:-58491088 None:intergenic
CCTGCATGACCTCCCACCAC+TGG 0.501859 4_1:-58490937 None:intergenic
GGTTTCCTTGGCACACCAGC+AGG 0.501896 4_1:-58490559 None:intergenic
TCATCTTCAACAGCAAAGAA+AGG 0.502586 4_1:-58489983 None:intergenic
CATCTTCAACAGCAAAGAAA+GGG 0.505105 4_1:-58489982 None:intergenic
AGGTCTAGGATAATAAGATA+AGG 0.507598 4_1:+58489128 Msa0559280:five_prime_UTR
AGCAGAAGAAATATTTCCAC+TGG 0.507649 4_1:+58491696 Msa0559280:CDS
AATCGCATTGGGGCAACACT+TGG 0.507819 4_1:-58490650 None:intergenic
AAGGTTCGTCTTGGTCGTGC+TGG 0.507899 4_1:+58491673 Msa0559280:CDS
GGTCTAGGATAATAAGATAA+GGG 0.508185 4_1:+58489129 Msa0559280:five_prime_UTR
TTTGCAACCAAGGTTCGTCT+TGG 0.508454 4_1:+58491664 Msa0559280:CDS
GATGTTAGTCACATGGATAC+TGG 0.508551 4_1:+58490065 Msa0559280:CDS
GAGGCATGAGTTAGCAAACT+TGG 0.511393 4_1:-58491481 None:intergenic
AATACTTAACAGGATTGGGT+TGG 0.515910 4_1:+58491820 Msa0559280:intron
TGGTTCTGCAACACTATCAA+TGG 0.521809 4_1:+58491346 Msa0559280:CDS
CTACAGGCTAAAGCTGGGGC+TGG 0.522254 4_1:+58491326 Msa0559280:intron
ATTGGCACAGTGGAATTCAC+TGG 0.525284 4_1:-58490691 None:intergenic
AATCAAGTTGACAATCGCAT+TGG 0.528249 4_1:-58490662 None:intergenic
GATGAAGAACAGAAACCAAT+GGG 0.528560 4_1:-58490007 None:intergenic
TACGATGTCGTCAACACCCC+TGG 0.528822 4_1:+58490032 Msa0559280:CDS
AGCACGACCAAGACGAACCT+TGG 0.532157 4_1:-58491671 None:intergenic
ATACCTCTCATACTCATTGA+GGG 0.532183 4_1:-58491722 None:intergenic
TTTGCTAACTCATGCCTCCA+TGG 0.532412 4_1:+58491486 Msa0559280:CDS
AATACCTCTCATACTCATTG+AGG 0.533233 4_1:-58491723 None:intergenic
TACAAAACCTGTGACAAAAG+AGG 0.535581 4_1:-58490973 None:intergenic
CTAACATCAGCTGTGACACC+AGG 0.537382 4_1:-58490050 None:intergenic
GAATCATGATAAACTGATGA+TGG 0.537708 4_1:+58492304 Msa0559280:three_prime_UTR
TTACATCAACAGCTAAGCTA+TGG 0.539826 4_1:-58492030 None:intergenic
GCTGAGGTCTTCAAGAAAGC+TGG 0.540699 4_1:+58490718 Msa0559280:CDS
TCATTGAATATGTGAAGTGA+AGG 0.543357 4_1:-58492142 None:intergenic
TCATACTACAGGCTAAAGCT+GGG 0.547408 4_1:+58491321 Msa0559280:intron
TATTTGGGTTTCTAGGTTCG+CGG 0.547751 4_1:+58490478 Msa0559280:intron
TGCACTCACAGGCATGGACT+TGG 0.548590 4_1:+58490528 Msa0559280:CDS
CAAGGAAACCTGGAATGACC+AGG 0.549218 4_1:+58490572 Msa0559280:CDS
GTGAGTGCATTCTCAAGTTG+TGG 0.555697 4_1:-58490514 None:intergenic
GTTGGCAGGAAGCATCCAGA+AGG 0.557639 4_1:+58491859 Msa0559280:CDS
TAGCTTAGCTGTTGATGTAA+CGG 0.559389 4_1:+58492033 Msa0559280:three_prime_UTR
TATCTTAAATAAGTCGTCCC+TGG 0.559911 4_1:-58490590 None:intergenic
GAAGTTGATGTTCCAGTGGT+GGG 0.560351 4_1:+58490925 Msa0559280:CDS
TGAGAATGCACTCACAGGCA+TGG 0.564594 4_1:+58490522 Msa0559280:CDS
CACAGCTGATGTTAGTCACA+TGG 0.566171 4_1:+58490058 Msa0559280:CDS
TGGTGGAACAGAAGTTGTTG+AGG 0.567512 4_1:+58491141 Msa0559280:CDS
ACTTGGCAATTCCTTCGCAA+AGG 0.568186 4_1:-58490633 None:intergenic
AAAGCGAAGAAAGAGTTGGC+AGG 0.568245 4_1:+58491845 Msa0559280:CDS
GATTCAAAGTAGCAGTATTG+GGG 0.568602 4_1:+58489937 Msa0559280:CDS
AATACTGCTACTTTGAATCC+AGG 0.573479 4_1:-58489933 None:intergenic
TAATATATTCTGAAAGTGAA+AGG 0.574368 4_1:+58492078 Msa0559280:three_prime_UTR
AGATGAAGAACAGAAACCAA+TGG 0.574721 4_1:-58490008 None:intergenic
GCTGTTGAAGATGAACCCAT+TGG 0.574983 4_1:+58489992 Msa0559280:CDS
ATTCTGAAAGTGAAAGGCGT+TGG 0.577197 4_1:+58492084 Msa0559280:three_prime_UTR
CAACTTGAGAATGCACTCAC+AGG 0.578403 4_1:+58490517 Msa0559280:CDS
AGAAGTTGATGTTCCAGTGG+TGG 0.584365 4_1:+58490924 Msa0559280:CDS
ACTTCCTTTCTTTGCAACCA+AGG 0.587255 4_1:+58491654 Msa0559280:CDS
GACTTGGTAGTTATACCTGC+TGG 0.591481 4_1:+58490544 Msa0559280:CDS
AGAGCTAACTGCAGAGCCAA+AGG 0.594985 4_1:+58489903 Msa0559280:CDS
ATAGAAATGGAAGCACATGC+AGG 0.595064 4_1:+58489399 Msa0559280:exon
TTATACCTGCTGGTGTGCCA+AGG 0.602158 4_1:+58490554 Msa0559280:CDS
CTTCTCCTTTCAAGCCATGG+AGG 0.603278 4_1:-58491500 None:intergenic
ACAAATCGCATTCAAAATGG+TGG 0.604111 4_1:+58491124 Msa0559280:CDS
CTAACTGCAGAGCCAAAGGT+GGG 0.608809 4_1:+58489907 Msa0559280:CDS
AAAGATATACTATCAACAGA+GGG 0.610899 4_1:-58491974 None:intergenic
GAAAGGAGAAGCTGGAGTGG+TGG 0.612474 4_1:+58491512 Msa0559280:CDS
TACAGCCCTCGATGTTGTGA+GGG 0.615329 4_1:+58490771 Msa0559280:CDS
TCCTAGACCTCAAATGAATG+TGG 0.615968 4_1:-58489115 None:intergenic
GCTAACTGCAGAGCCAAAGG+TGG 0.616454 4_1:+58489906 Msa0559280:CDS
ATTGTGAGAACCCTTTGCGA+AGG 0.618199 4_1:+58490622 Msa0559280:CDS
TTACAGCCCTCGATGTTGTG+AGG 0.618220 4_1:+58490770 Msa0559280:CDS
AAGAGTTATAGTATATTATG+GGG 0.623912 4_1:-58489340 None:intergenic
GTCCCCTCAATGAGTATGAG+AGG 0.626340 4_1:+58491719 Msa0559280:CDS
CACATGCAGGAGCCAACCAA+AGG 0.627115 4_1:+58489412 Msa0559280:CDS
TACCTCTCATACTCATTGAG+GGG 0.629921 4_1:-58491721 None:intergenic
GAAAGATATACTATCAACAG+AGG 0.638398 4_1:-58491975 None:intergenic
TAACATCAGCTGTGACACCA+GGG 0.641600 4_1:-58490049 None:intergenic
CTCAGCAGCAATTGGCACAG+TGG 0.644156 4_1:-58490701 None:intergenic
TTGGCAGGAAGCATCCAGAA+GGG 0.644240 4_1:+58491860 Msa0559280:CDS
CTTGAAAGGAGAAGCTGGAG+TGG 0.646717 4_1:+58491509 Msa0559280:CDS
AAGAGAAGTTGATGTTCCAG+TGG 0.648826 4_1:+58490921 Msa0559280:CDS
ATTTGCCCTCACAACATCGA+GGG 0.656414 4_1:-58490776 None:intergenic
TACTCATTGAGGGGACCCAG+TGG 0.658052 4_1:-58491712 None:intergenic
GTTGATGTTCCAGTGGTGGG+AGG 0.666286 4_1:+58490928 Msa0559280:CDS
TAACTGCAGAGCCAAAGGTG+GGG 0.668015 4_1:+58489908 Msa0559280:CDS
TCACATGGATACTGGCGCTG+TGG 0.674357 4_1:+58490073 Msa0559280:CDS
AAACGGGACAAGAAATGAGA+GGG 0.675033 4_1:-58489311 None:intergenic
GCAGAAGAAATATTTCCACT+GGG 0.677199 4_1:+58491697 Msa0559280:CDS
TCAAGTTGACAATCGCATTG+GGG 0.678396 4_1:-58490660 None:intergenic
AAGGAAACCTGGAATGACCA+GGG 0.681756 4_1:+58490573 Msa0559280:CDS
AAAACGGGACAAGAAATGAG+AGG 0.682593 4_1:-58489312 None:intergenic
AACATCAGCTGTGACACCAG+GGG 0.685298 4_1:-58490048 None:intergenic
ATTCAAAGTAGCAGTATTGG+GGG 0.691272 4_1:+58489938 Msa0559280:CDS
CATACTACAGGCTAAAGCTG+GGG 0.698547 4_1:+58491322 Msa0559280:intron
TCTGCAGTGAAGCTACTGGG+AGG 0.700856 4_1:-58491085 None:intergenic
TATTTGCCCTCACAACATCG+AGG 0.709081 4_1:-58490777 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAAAATTATAAAAACAAAA+TGG + chr4_1:58489189-58489208 Msa0559280:five_prime_UTR 10.0%
!! AAAATATACTAATTGAGAAT+AGG - chr4_1:58489252-58489271 None:intergenic 15.0%
!! AACAGAAAAAATATAATGAA+TGG - chr4_1:58489277-58489296 None:intergenic 15.0%
!! ACTTATCAATCAATAATATT+CGG - chr4_1:58489631-58489650 None:intergenic 15.0%
!! ATAAATATTATTCATACTAC+AGG + chr4_1:58491310-58491329 Msa0559280:intron 15.0%
!! TTAATAGTTTGATAAACTAT+TGG - chr4_1:58491749-58491768 None:intergenic 15.0%
!! CAAACTATTAATTTCTTTAT+TGG + chr4_1:58491758-58491777 Msa0559280:intron 15.0%
!! ATTAAAAAATAAGTCAGATA+AGG + chr4_1:58491893-58491912 Msa0559280:exon 15.0%
!! TGAACATTCATAAAATTATT+CGG - chr4_1:58492226-58492245 None:intergenic 15.0%
!! AGACATATATGTCAATTTAT+TGG + chr4_1:58489221-58489240 Msa0559280:five_prime_UTR 20.0%
!! AAGAGTTATAGTATATTATG+GGG - chr4_1:58489343-58489362 None:intergenic 20.0%
!! GAAGAGTTATAGTATATTAT+GGG - chr4_1:58489344-58489363 None:intergenic 20.0%
!! TGAAGAGTTATAGTATATTA+TGG - chr4_1:58489345-58489364 None:intergenic 20.0%
!!! GTCCAATATTGTTTTTTTAT+AGG + chr4_1:58489578-58489597 Msa0559280:intron 20.0%
!! TGCCTATAAAAAAACAATAT+TGG - chr4_1:58489583-58489602 None:intergenic 20.0%
!! CTTGATATTACAGATAATAA+CGG + chr4_1:58489691-58489710 Msa0559280:intron 20.0%
!! TCCTTAAAATAAATAAAGAG+CGG - chr4_1:58490400-58490419 None:intergenic 20.0%
!!! GATGTCATAATTTTTAAGTA+AGG - chr4_1:58491016-58491035 None:intergenic 20.0%
!!! TCCTTACTTCTAATTTTATT+TGG + chr4_1:58491262-58491281 Msa0559280:intron 20.0%
!!! CTGTAAATTTTGATATGAAA+GGG - chr4_1:58491607-58491626 None:intergenic 20.0%
!! TTTGATGTTTAATACTTAAC+AGG + chr4_1:58491810-58491829 Msa0559280:intron 20.0%
!!! TAATATATTCTGAAAGTGAA+AGG + chr4_1:58492078-58492097 Msa0559280:three_prime_UTR 20.0%
!! TTTAACAGAAAAAACATTGA+AGG - chr4_1:58492276-58492295 None:intergenic 20.0%
! TAAAAACCTGGAAATTTGAA+GGG - chr4_1:58489464-58489483 None:intergenic 25.0%
! ATAAAAACCTGGAAATTTGA+AGG - chr4_1:58489465-58489484 None:intergenic 25.0%
! AAAGGAAGAAAATAAAAACC+TGG - chr4_1:58489476-58489495 None:intergenic 25.0%
!!! AGGTTTTTATTTTCTTCCTT+TGG + chr4_1:58489475-58489494 Msa0559280:intron 25.0%
! ATAAATTTCAGCTTCAGTAA+TGG + chr4_1:58490256-58490275 Msa0559280:intron 25.0%
! TTTGGAAACTTATAAAGTCA+CGG - chr4_1:58490292-58490311 None:intergenic 25.0%
! TTGAATGATGCAAGTATATT+TGG + chr4_1:58490462-58490481 Msa0559280:intron 25.0%
! TGAATGATGCAAGTATATTT+GGG + chr4_1:58490463-58490482 Msa0559280:intron 25.0%
!! GACTTATTTAAGATAAATGC+TGG + chr4_1:58490598-58490617 Msa0559280:CDS 25.0%
! AATCAATTATGAGATAGAAG+AGG - chr4_1:58490825-58490844 None:intergenic 25.0%
! TTATTCATACAATAGTAGGA+AGG - chr4_1:58490850-58490869 None:intergenic 25.0%
! GCATTTATTCATACAATAGT+AGG - chr4_1:58490854-58490873 None:intergenic 25.0%
! TTAAAAACCAAGTTTGAAGA+AGG - chr4_1:58491057-58491076 None:intergenic 25.0%
!!! TCTTCAAACTTGGTTTTTAA+AGG + chr4_1:58491057-58491076 Msa0559280:intron 25.0%
! TTTATCACCTAATATGTGAT+TGG + chr4_1:58491185-58491204 Msa0559280:intron 25.0%
! GCCAAATAAAATTAGAAGTA+AGG - chr4_1:58491266-58491285 None:intergenic 25.0%
!!! GCTGTAAATTTTGATATGAA+AGG - chr4_1:58491608-58491627 None:intergenic 25.0%
! TGTTTAATACTTAACAGGAT+TGG + chr4_1:58491815-58491834 Msa0559280:intron 25.0%
! GTTTAATACTTAACAGGATT+GGG + chr4_1:58491816-58491835 Msa0559280:intron 25.0%
! AAAGATATACTATCAACAGA+GGG - chr4_1:58491977-58491996 None:intergenic 25.0%
!! AGAACAGTACTCTAAATTTT+TGG + chr4_1:58492001-58492020 Msa0559280:three_prime_UTR 25.0%
! CACTTTCAGAATATATTACA+AGG - chr4_1:58492076-58492095 None:intergenic 25.0%
! GGATTAAACAAAATTTGATC+TGG - chr4_1:58492124-58492143 None:intergenic 25.0%
ATTGCACAATGTGAAGTAAA+AGG - chr4_1:58489071-58489090 None:intergenic 30.0%
TCTCAGAATTCTTAACCATT+AGG - chr4_1:58489094-58489113 None:intergenic 30.0%
! AGGTCTAGGATAATAAGATA+AGG + chr4_1:58489128-58489147 Msa0559280:five_prime_UTR 30.0%
! GGTCTAGGATAATAAGATAA+GGG + chr4_1:58489129-58489148 Msa0559280:five_prime_UTR 30.0%
! AGCGAAAAATGAATTTTGTG+TGG - chr4_1:58489171-58489190 None:intergenic 30.0%
ATATTATGGGGTGTGAAAAA+CGG - chr4_1:58489331-58489350 None:intergenic 30.0%
TCTCAAGTAATCCATAGAAA+TGG + chr4_1:58489386-58489405 Msa0559280:exon 30.0%
GCTAGAAAGTTCAATGATAT+TGG + chr4_1:58489516-58489535 Msa0559280:intron 30.0%
TTAAATATCGGTCCAAATCA+CGG + chr4_1:58489795-58489814 Msa0559280:intron 30.0%
! GTAACAGTTGTGTTTTTCTT+TGG + chr4_1:58490352-58490371 Msa0559280:intron 30.0%
!!! GCCGCTCTTTATTTATTTTA+AGG + chr4_1:58490396-58490415 Msa0559280:intron 30.0%
GCAAGAGAAAAAAAATACAC+AGG - chr4_1:58490876-58490895 None:intergenic 30.0%
!!! GTGTATTTTTTTTCTCTTGC+AGG + chr4_1:58490876-58490895 Msa0559280:intron 30.0%
!! TTTTGTCACAGGTTTTGTAA+AGG + chr4_1:58490977-58490996 Msa0559280:intron 30.0%
CTATACTCCAATCACATATT+AGG - chr4_1:58491195-58491214 None:intergenic 30.0%
CTAATATGTGATTGGAGTAT+AGG + chr4_1:58491193-58491212 Msa0559280:intron 30.0%
CTAAACATGATTGATTGTGT+AGG + chr4_1:58491446-58491465 Msa0559280:intron 30.0%
! AAGATAAAGAGCATGCATAA+GGG - chr4_1:58491584-58491603 None:intergenic 30.0%
TTATTGGAAGCAACAAACAA+AGG + chr4_1:58491774-58491793 Msa0559280:intron 30.0%
GAAAGATATACTATCAACAG+AGG - chr4_1:58491978-58491997 None:intergenic 30.0%
TCATTGAATATGTGAAGTGA+AGG - chr4_1:58492145-58492164 None:intergenic 30.0%
GAAAAAACATTGAAGGATTG+AGG - chr4_1:58492269-58492288 None:intergenic 30.0%
GAATCATGATAAACTGATGA+TGG + chr4_1:58492304-58492323 Msa0559280:three_prime_UTR 30.0%
TTCACATTGTGCAATCCTAA+TGG + chr4_1:58489076-58489095 Msa0559280:five_prime_UTR 35.0%
AAGATAAGGGTTCAGAAAAC+TGG + chr4_1:58489142-58489161 Msa0559280:five_prime_UTR 35.0%
TATTATGGGGTGTGAAAAAC+GGG - chr4_1:58489330-58489349 None:intergenic 35.0%
AGCCGATAGGGTATAAATTA+GGG + chr4_1:58489722-58489741 Msa0559280:intron 35.0%
CGATGTCACTGCTTAAATAT+CGG + chr4_1:58489783-58489802 Msa0559280:intron 35.0%
! TATGTCTGTTTTGTGATGAC+AGG + chr4_1:58489857-58489876 Msa0559280:intron 35.0%
!! AATACTGCTACTTTGAATCC+AGG - chr4_1:58489936-58489955 None:intergenic 35.0%
TGGATTCAAAGTAGCAGTAT+TGG + chr4_1:58489935-58489954 Msa0559280:CDS 35.0%
GGATTCAAAGTAGCAGTATT+GGG + chr4_1:58489936-58489955 Msa0559280:CDS 35.0%
GATTCAAAGTAGCAGTATTG+GGG + chr4_1:58489937-58489956 Msa0559280:CDS 35.0%
! ATTCAAAGTAGCAGTATTGG+GGG + chr4_1:58489938-58489957 Msa0559280:CDS 35.0%
CATCTTCAACAGCAAAGAAA+GGG - chr4_1:58489985-58490004 None:intergenic 35.0%
TCATCTTCAACAGCAAAGAA+AGG - chr4_1:58489986-58490005 None:intergenic 35.0%
GATGAAGAACAGAAACCAAT+GGG - chr4_1:58490010-58490029 None:intergenic 35.0%
AGATGAAGAACAGAAACCAA+TGG - chr4_1:58490011-58490030 None:intergenic 35.0%
GAACATGAGAAATGTTAACG+CGG - chr4_1:58490204-58490223 None:intergenic 35.0%
TCCAAACAAACACTTAGTAG+TGG + chr4_1:58490306-58490325 Msa0559280:intron 35.0%
ACCACTACTAAGTGTTTGTT+TGG - chr4_1:58490310-58490329 None:intergenic 35.0%
!! TGTTTTTCTTTGGTTCAACC+TGG + chr4_1:58490362-58490381 Msa0559280:intron 35.0%
! GCAAGTATATTTGGGTTTCT+AGG + chr4_1:58490471-58490490 Msa0559280:intron 35.0%
TATCTTAAATAAGTCGTCCC+TGG - chr4_1:58490593-58490612 None:intergenic 35.0%
!! ATCAAGTTGACAATCGCATT+GGG - chr4_1:58490664-58490683 None:intergenic 35.0%
!! AATCAAGTTGACAATCGCAT+TGG - chr4_1:58490665-58490684 None:intergenic 35.0%
! TATGATCCAAAGCGACTTTT+AGG + chr4_1:58490745-58490764 Msa0559280:CDS 35.0%
! AATATTGCCTCTTTTGTCAC+AGG + chr4_1:58490966-58490985 Msa0559280:CDS 35.0%
TACAAAACCTGTGACAAAAG+AGG - chr4_1:58490976-58490995 None:intergenic 35.0%
CACTAAACCTTCTTCAAACT+TGG + chr4_1:58491047-58491066 Msa0559280:intron 35.0%
AATGCGATTTGTCAGGTATT+CGG - chr4_1:58491116-58491135 None:intergenic 35.0%
! CATTTTGAATGCGATTTGTC+AGG - chr4_1:58491123-58491142 None:intergenic 35.0%
CTGACAAATCGCATTCAAAA+TGG + chr4_1:58491121-58491140 Msa0559280:CDS 35.0%
ACAAATCGCATTCAAAATGG+TGG + chr4_1:58491124-58491143 Msa0559280:CDS 35.0%
TATGTGATTGGAGTATAGGA+AGG + chr4_1:58491197-58491216 Msa0559280:intron 35.0%
!! AGGAAGGATAAGCTTGTTAA+CGG + chr4_1:58491213-58491232 Msa0559280:intron 35.0%
AATTGGTATCAATTGTGTCC+CGG + chr4_1:58491411-58491430 Msa0559280:intron 35.0%
GGGAAAAAAGGACTTGAAAT+TGG - chr4_1:58491564-58491583 None:intergenic 35.0%
! GAAGATAAAGAGCATGCATA+AGG - chr4_1:58491585-58491604 None:intergenic 35.0%
AGCAGAAGAAATATTTCCAC+TGG + chr4_1:58491696-58491715 Msa0559280:CDS 35.0%
GCAGAAGAAATATTTCCACT+GGG + chr4_1:58491697-58491716 Msa0559280:CDS 35.0%
ATACCTCTCATACTCATTGA+GGG - chr4_1:58491725-58491744 None:intergenic 35.0%
AATACCTCTCATACTCATTG+AGG - chr4_1:58491726-58491745 None:intergenic 35.0%
AATACTTAACAGGATTGGGT+TGG + chr4_1:58491820-58491839 Msa0559280:intron 35.0%
TAATGAATTCTACTCCCTTC+TGG - chr4_1:58491877-58491896 None:intergenic 35.0%
TTACATCAACAGCTAAGCTA+TGG - chr4_1:58492033-58492052 None:intergenic 35.0%
TAGCTTAGCTGTTGATGTAA+CGG + chr4_1:58492033-58492052 Msa0559280:three_prime_UTR 35.0%
TCCTAGACCTCAAATGAATG+TGG - chr4_1:58489118-58489137 None:intergenic 40.0%
AAACGGGACAAGAAATGAGA+GGG - chr4_1:58489314-58489333 None:intergenic 40.0%
AAAACGGGACAAGAAATGAG+AGG - chr4_1:58489315-58489334 None:intergenic 40.0%
TGCATGTGCTTCCATTTCTA+TGG - chr4_1:58489400-58489419 None:intergenic 40.0%
! ATAGAAATGGAAGCACATGC+AGG + chr4_1:58489399-58489418 Msa0559280:exon 40.0%
GATTCTTGCAATCCTTTGGT+TGG - chr4_1:58489427-58489446 None:intergenic 40.0%
CAGAGATTCTTGCAATCCTT+TGG - chr4_1:58489431-58489450 None:intergenic 40.0%
TCTTCACCCTTCAAATTTCC+AGG + chr4_1:58489455-58489474 Msa0559280:CDS 40.0%
CGTTAGCTGAATGAAACCAA+AGG - chr4_1:58489494-58489513 None:intergenic 40.0%
CAGCCGATAGGGTATAAATT+AGG + chr4_1:58489721-58489740 Msa0559280:intron 40.0%
GGCCCTAATTTATACCCTAT+CGG - chr4_1:58489727-58489746 None:intergenic 40.0%
! TCTGTTTTGTGATGACAGGA+AGG + chr4_1:58489861-58489880 Msa0559280:intron 40.0%
GATGTTAGTCACATGGATAC+TGG + chr4_1:58490065-58490084 Msa0559280:CDS 40.0%
AAGTCACGTTCAAAGTGCAT+AGG - chr4_1:58490226-58490245 None:intergenic 40.0%
TTTCAGCTTCAGTAATGGCA+CGG + chr4_1:58490261-58490280 Msa0559280:intron 40.0%
! TGGTTTGTGCTAATTCACAG+TGG + chr4_1:58490326-58490345 Msa0559280:intron 40.0%
! TATTTGGGTTTCTAGGTTCG+CGG + chr4_1:58490478-58490497 Msa0559280:intron 40.0%
!! TCAAGTTGACAATCGCATTG+GGG - chr4_1:58490663-58490682 None:intergenic 40.0%
GTAACTCCTAAAAGTCGCTT+TGG - chr4_1:58490754-58490773 None:intergenic 40.0%
! TGTGAGGGCAAATACTTTTG+TGG + chr4_1:58490786-58490805 Msa0559280:CDS 40.0%
!!! TTTTTTTCTCTTGCAGGCAG+AGG + chr4_1:58490882-58490901 Msa0559280:intron 40.0%
ACTGGAACATCAACTTCTCT+TGG - chr4_1:58490922-58490941 None:intergenic 40.0%
!! AAGAGAAGTTGATGTTCCAG+TGG + chr4_1:58490921-58490940 Msa0559280:CDS 40.0%
TTCATACTACAGGCTAAAGC+TGG + chr4_1:58491320-58491339 Msa0559280:intron 40.0%
TCATACTACAGGCTAAAGCT+GGG + chr4_1:58491321-58491340 Msa0559280:intron 40.0%
! TGGTTCTGCAACACTATCAA+TGG + chr4_1:58491346-58491365 Msa0559280:CDS 40.0%
AAGTTCCACGCATACTCAAT+TGG + chr4_1:58491394-58491413 Msa0559280:intron 40.0%
TGATACCAATTGAGTATGCG+TGG - chr4_1:58491402-58491421 None:intergenic 40.0%
TGTTTAGTTAGTCCCTCTAC+CGG - chr4_1:58491433-58491452 None:intergenic 40.0%
!! GTGTGCTTATGTTGATTCTC+AGG + chr4_1:58491536-58491555 Msa0559280:CDS 40.0%
GAGCATGCATAAGGGAAAAA+AGG - chr4_1:58491576-58491595 None:intergenic 40.0%
ACTTCCTTTCTTTGCAACCA+AGG + chr4_1:58491654-58491673 Msa0559280:CDS 40.0%
TACCTCTCATACTCATTGAG+GGG - chr4_1:58491724-58491743 None:intergenic 40.0%
GGAAAAAGCGAAGAAAGAGT+TGG + chr4_1:58491841-58491860 Msa0559280:CDS 40.0%
! ATTCTGAAAGTGAAAGGCGT+TGG + chr4_1:58492084-58492103 Msa0559280:three_prime_UTR 40.0%
CTGAGAGCCACATTCATTTG+AGG + chr4_1:58489108-58489127 Msa0559280:five_prime_UTR 45.0%
! GCCACATTCATTTGAGGTCT+AGG + chr4_1:58489114-58489133 Msa0559280:five_prime_UTR 45.0%
TATAAATTAGGGCCGCGTAG+CGG + chr4_1:58489733-58489752 Msa0559280:intron 45.0%
ATATATTTGCAGCCGCTACG+CGG - chr4_1:58489748-58489767 None:intergenic 45.0%
AGCAGTGACATCGAAGTTCT+TGG - chr4_1:58489776-58489795 None:intergenic 45.0%
AATATCGGTCCAAATCACGG+TGG + chr4_1:58489798-58489817 Msa0559280:intron 45.0%
AAATGTCTGCCACCGTGATT+TGG - chr4_1:58489810-58489829 None:intergenic 45.0%
! GTTTTGTGATGACAGGAAGG+AGG + chr4_1:58489864-58489883 Msa0559280:intron 45.0%
GCTGTTGAAGATGAACCCAT+TGG + chr4_1:58489992-58490011 Msa0559280:CDS 45.0%
TAACATCAGCTGTGACACCA+GGG - chr4_1:58490052-58490071 None:intergenic 45.0%
CACAGCTGATGTTAGTCACA+TGG + chr4_1:58490058-58490077 Msa0559280:CDS 45.0%
! TTTCTAGGTTCGCGGCTTTT+TGG + chr4_1:58490486-58490505 Msa0559280:intron 45.0%
! TTCTAGGTTCGCGGCTTTTT+GGG + chr4_1:58490487-58490506 Msa0559280:intron 45.0%
! GTGAGTGCATTCTCAAGTTG+TGG - chr4_1:58490517-58490536 None:intergenic 45.0%
CAACTTGAGAATGCACTCAC+AGG + chr4_1:58490517-58490536 Msa0559280:CDS 45.0%
! GACTTGGTAGTTATACCTGC+TGG + chr4_1:58490544-58490563 Msa0559280:CDS 45.0%
AAGGAAACCTGGAATGACCA+GGG + chr4_1:58490573-58490592 Msa0559280:CDS 45.0%
ATTGTGAGAACCCTTTGCGA+AGG + chr4_1:58490622-58490641 Msa0559280:CDS 45.0%
CTTGGCAATTCCTTCGCAAA+GGG - chr4_1:58490635-58490654 None:intergenic 45.0%
ACTTGGCAATTCCTTCGCAA+AGG - chr4_1:58490636-58490655 None:intergenic 45.0%
ATTGGCACAGTGGAATTCAC+TGG - chr4_1:58490694-58490713 None:intergenic 45.0%
TTGAAGACCTCAGCAGCAAT+TGG - chr4_1:58490712-58490731 None:intergenic 45.0%
ATTTGCCCTCACAACATCGA+GGG - chr4_1:58490779-58490798 None:intergenic 45.0%
TATTTGCCCTCACAACATCG+AGG - chr4_1:58490780-58490799 None:intergenic 45.0%
!! AGAAGTTGATGTTCCAGTGG+TGG + chr4_1:58490924-58490943 Msa0559280:CDS 45.0%
!! GAAGTTGATGTTCCAGTGGT+GGG + chr4_1:58490925-58490944 Msa0559280:CDS 45.0%
TCTTCTGCAGTGAAGCTACT+GGG - chr4_1:58491091-58491110 None:intergenic 45.0%
TTCTTCTGCAGTGAAGCTAC+TGG - chr4_1:58491092-58491111 None:intergenic 45.0%
TGGTGGAACAGAAGTTGTTG+AGG + chr4_1:58491141-58491160 Msa0559280:CDS 45.0%
CATACTACAGGCTAAAGCTG+GGG + chr4_1:58491322-58491341 Msa0559280:intron 45.0%
TATCAATTGTGTCCCGGTAG+AGG + chr4_1:58491417-58491436 Msa0559280:intron 45.0%
ATCAATTGTGTCCCGGTAGA+GGG + chr4_1:58491418-58491437 Msa0559280:intron 45.0%
GTTTAGTTAGTCCCTCTACC+GGG - chr4_1:58491432-58491451 None:intergenic 45.0%
GAGGCATGAGTTAGCAAACT+TGG - chr4_1:58491484-58491503 None:intergenic 45.0%
TTTGCTAACTCATGCCTCCA+TGG + chr4_1:58491486-58491505 Msa0559280:CDS 45.0%
CGAACCTTGGTTGCAAAGAA+AGG - chr4_1:58491661-58491680 None:intergenic 45.0%
TTTGCAACCAAGGTTCGTCT+TGG + chr4_1:58491664-58491683 Msa0559280:CDS 45.0%
AAAGCGAAGAAAGAGTTGGC+AGG + chr4_1:58491845-58491864 Msa0559280:CDS 45.0%
!! AAAAAAAATTAAATCATATT+TGG + chr4_1:58490171-58490190 Msa0559280:intron 5.0%
AACGGTCAAATGCAGCCGAT+AGG + chr4_1:58489709-58489728 Msa0559280:intron 50.0%
ACGGTCAAATGCAGCCGATA+GGG + chr4_1:58489710-58489729 Msa0559280:intron 50.0%
AGAGCTAACTGCAGAGCCAA+AGG + chr4_1:58489903-58489922 Msa0559280:CDS 50.0%
CTAACTGCAGAGCCAAAGGT+GGG + chr4_1:58489907-58489926 Msa0559280:CDS 50.0%
TAACTGCAGAGCCAAAGGTG+GGG + chr4_1:58489908-58489927 Msa0559280:CDS 50.0%
AACATCAGCTGTGACACCAG+GGG - chr4_1:58490051-58490070 None:intergenic 50.0%
CTAACATCAGCTGTGACACC+AGG - chr4_1:58490053-58490072 None:intergenic 50.0%
! TCTAGGTTCGCGGCTTTTTG+GGG + chr4_1:58490488-58490507 Msa0559280:intron 50.0%
TGAGAATGCACTCACAGGCA+TGG + chr4_1:58490522-58490541 Msa0559280:CDS 50.0%
TTATACCTGCTGGTGTGCCA+AGG + chr4_1:58490554-58490573 Msa0559280:CDS 50.0%
CTGGTCATTCCAGGTTTCCT+TGG - chr4_1:58490574-58490593 None:intergenic 50.0%
CAAGGAAACCTGGAATGACC+AGG + chr4_1:58490572-58490591 Msa0559280:CDS 50.0%
AATCGCATTGGGGCAACACT+TGG - chr4_1:58490653-58490672 None:intergenic 50.0%
GCTGAGGTCTTCAAGAAAGC+TGG + chr4_1:58490718-58490737 Msa0559280:CDS 50.0%
TTACAGCCCTCGATGTTGTG+AGG + chr4_1:58490770-58490789 Msa0559280:CDS 50.0%
TACAGCCCTCGATGTTGTGA+GGG + chr4_1:58490771-58490790 Msa0559280:CDS 50.0%
TCATGCCTCCATGGCTTGAA+AGG + chr4_1:58491495-58491514 Msa0559280:CDS 50.0%
CTTCTCCTTTCAAGCCATGG+AGG - chr4_1:58491503-58491522 None:intergenic 50.0%
CAGCTTCTCCTTTCAAGCCA+TGG - chr4_1:58491506-58491525 None:intergenic 50.0%
CATGGCTTGAAAGGAGAAGC+TGG + chr4_1:58491504-58491523 Msa0559280:CDS 50.0%
CTTGAAAGGAGAAGCTGGAG+TGG + chr4_1:58491509-58491528 Msa0559280:CDS 50.0%
GTCCCCTCAATGAGTATGAG+AGG + chr4_1:58491719-58491738 Msa0559280:CDS 50.0%
!! TTGGCAGGAAGCATCCAGAA+GGG + chr4_1:58491860-58491879 Msa0559280:CDS 50.0%
CACATGCAGGAGCCAACCAA+AGG + chr4_1:58489412-58489431 Msa0559280:CDS 55.0%
GCTAACTGCAGAGCCAAAGG+TGG + chr4_1:58489906-58489925 Msa0559280:CDS 55.0%
TACGATGTCGTCAACACCCC+TGG + chr4_1:58490032-58490051 Msa0559280:CDS 55.0%
TCACATGGATACTGGCGCTG+TGG + chr4_1:58490073-58490092 Msa0559280:CDS 55.0%
GAGCGGCTTGAACAGAATCC+AGG - chr4_1:58490383-58490402 None:intergenic 55.0%
TGCACTCACAGGCATGGACT+TGG + chr4_1:58490528-58490547 Msa0559280:CDS 55.0%
AAGTCGTCCCTGGTCATTCC+AGG - chr4_1:58490583-58490602 None:intergenic 55.0%
CTCAGCAGCAATTGGCACAG+TGG - chr4_1:58490704-58490723 None:intergenic 55.0%
CACTGTGCCAATTGCTGCTG+AGG + chr4_1:58490702-58490721 Msa0559280:CDS 55.0%
!! CTCTTGCAGGCAGAGGTACT+TGG + chr4_1:58490889-58490908 Msa0559280:intron 55.0%
! GTTGATGTTCCAGTGGTGGG+AGG + chr4_1:58490928-58490947 Msa0559280:CDS 55.0%
TCTGCAGTGAAGCTACTGGG+AGG - chr4_1:58491088-58491107 None:intergenic 55.0%
GAAAGGAGAAGCTGGAGTGG+TGG + chr4_1:58491512-58491531 Msa0559280:CDS 55.0%
AGCACGACCAAGACGAACCT+TGG - chr4_1:58491674-58491693 None:intergenic 55.0%
AAGGTTCGTCTTGGTCGTGC+TGG + chr4_1:58491673-58491692 Msa0559280:CDS 55.0%
TACTCATTGAGGGGACCCAG+TGG - chr4_1:58491715-58491734 None:intergenic 55.0%
!! GTTGGCAGGAAGCATCCAGA+AGG + chr4_1:58491859-58491878 Msa0559280:CDS 55.0%
GAATCCAGGTGCCCCACCTT+TGG - chr4_1:58489922-58489941 None:intergenic 60.0%
! GTAGCAGTATTGGGGGCTGC+TGG + chr4_1:58489945-58489964 Msa0559280:CDS 60.0%
TTGGGGGCTGCTGGTGGAAT+TGG + chr4_1:58489954-58489973 Msa0559280:CDS 60.0%
GGTTTCCTTGGCACACCAGC+AGG - chr4_1:58490562-58490581 None:intergenic 60.0%
GCTGGTGTGCCAAGGAAACC+TGG + chr4_1:58490562-58490581 Msa0559280:CDS 60.0%
CTACAGGCTAAAGCTGGGGC+TGG + chr4_1:58491326-58491345 Msa0559280:intron 60.0%
CAGCAGCGCGTGTCTTCAAC+AGG + chr4_1:58491624-58491643 Msa0559280:intron 60.0%
! AGAGCCAAAGGTGGGGCACC+TGG + chr4_1:58489915-58489934 Msa0559280:CDS 65.0%
! GCAGTATTGGGGGCTGCTGG+TGG + chr4_1:58489948-58489967 Msa0559280:CDS 65.0%
CCTGCATGACCTCCCACCAC+TGG - chr4_1:58490940-58490959 None:intergenic 65.0%
! CCAGTGGTGGGAGGTCATGC+AGG + chr4_1:58490937-58490956 Msa0559280:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 58488982 58492367 58488982 ID=Msa0559280;Name=Msa0559280
chr4_1 mRNA 58488982 58492367 58488982 ID=Msa0559280-mRNA-1;Parent=Msa0559280;Name=Msa0559280-mRNA-1;_AED=0.04;_eAED=0.04;_QI=423|1|1|1|1|1|9|463|356
chr4_1 exon 58488982 58489476 58488982 ID=Msa0559280-mRNA-1:exon:17791;Parent=Msa0559280-mRNA-1
chr4_1 exon 58489879 58490094 58489879 ID=Msa0559280-mRNA-1:exon:17792;Parent=Msa0559280-mRNA-1
chr4_1 exon 58490493 58490807 58490493 ID=Msa0559280-mRNA-1:exon:17793;Parent=Msa0559280-mRNA-1
chr4_1 exon 58490898 58490987 58490898 ID=Msa0559280-mRNA-1:exon:17794;Parent=Msa0559280-mRNA-1
chr4_1 exon 58491079 58491162 58491079 ID=Msa0559280-mRNA-1:exon:17795;Parent=Msa0559280-mRNA-1
chr4_1 exon 58491332 58491367 58491332 ID=Msa0559280-mRNA-1:exon:17796;Parent=Msa0559280-mRNA-1
chr4_1 exon 58491468 58491557 58491468 ID=Msa0559280-mRNA-1:exon:17797;Parent=Msa0559280-mRNA-1
chr4_1 exon 58491646 58491740 58491646 ID=Msa0559280-mRNA-1:exon:17798;Parent=Msa0559280-mRNA-1
chr4_1 exon 58491832 58492367 58491832 ID=Msa0559280-mRNA-1:exon:17799;Parent=Msa0559280-mRNA-1
chr4_1 five_prime_UTR 58488982 58489404 58488982 ID=Msa0559280-mRNA-1:five_prime_utr;Parent=Msa0559280-mRNA-1
chr4_1 CDS 58489405 58489476 58489405 ID=Msa0559280-mRNA-1:cds;Parent=Msa0559280-mRNA-1
chr4_1 CDS 58489879 58490094 58489879 ID=Msa0559280-mRNA-1:cds;Parent=Msa0559280-mRNA-1
chr4_1 CDS 58490493 58490807 58490493 ID=Msa0559280-mRNA-1:cds;Parent=Msa0559280-mRNA-1
chr4_1 CDS 58490898 58490987 58490898 ID=Msa0559280-mRNA-1:cds;Parent=Msa0559280-mRNA-1
chr4_1 CDS 58491079 58491162 58491079 ID=Msa0559280-mRNA-1:cds;Parent=Msa0559280-mRNA-1
chr4_1 CDS 58491332 58491367 58491332 ID=Msa0559280-mRNA-1:cds;Parent=Msa0559280-mRNA-1
chr4_1 CDS 58491468 58491557 58491468 ID=Msa0559280-mRNA-1:cds;Parent=Msa0559280-mRNA-1
chr4_1 CDS 58491646 58491740 58491646 ID=Msa0559280-mRNA-1:cds;Parent=Msa0559280-mRNA-1
chr4_1 CDS 58491832 58491904 58491832 ID=Msa0559280-mRNA-1:cds;Parent=Msa0559280-mRNA-1
chr4_1 three_prime_UTR 58491905 58492367 58491905 ID=Msa0559280-mRNA-1:three_prime_utr;Parent=Msa0559280-mRNA-1
Gene Sequence

>Msa0559280

ATGGAAGCACATGCAGGAGCCAACCAAAGGATTGCAAGAATCTCTGCTCATCTTCACCCTTCAAATTTCCAGGAAGGAGGTGATGTTGTAATTGACAGAGCTAACTGCAGAGCCAAAGGTGGGGCACCTGGATTCAAAGTAGCAGTATTGGGGGCTGCTGGTGGAATTGGTCAATCCCTTTCTTTGCTGTTGAAGATGAACCCATTGGTTTCTGTTCTTCATCTTTACGATGTCGTCAACACCCCTGGTGTCACAGCTGATGTTAGTCACATGGATACTGGCGCTGTGGTTCGCGGCTTTTTGGGGCAACCACAACTTGAGAATGCACTCACAGGCATGGACTTGGTAGTTATACCTGCTGGTGTGCCAAGGAAACCTGGAATGACCAGGGACGACTTATTTAAGATAAATGCTGGAATTGTGAGAACCCTTTGCGAAGGAATTGCCAAGTGTTGCCCCAATGCGATTGTCAACTTGATTAGCAATCCAGTGAATTCCACTGTGCCAATTGCTGCTGAGGTCTTCAAGAAAGCTGGTACATATGATCCAAAGCGACTTTTAGGAGTTACAGCCCTCGATGTTGTGAGGGCAAATACTTTTGTGGCAGAGGTACTTGGTGTTGATCCAAGAGAAGTTGATGTTCCAGTGGTGGGAGGTCATGCAGGAGTCACAATATTGCCTCTTTTGTCACAGGTTAAGCCTCCCAGTAGCTTCACTGCAGAAGAAACCGAATACCTGACAAATCGCATTCAAAATGGTGGAACAGAAGTTGTTGAGGCTAAAGCTGGGGCTGGTTCTGCAACACTATCAATGGCATATGCAGCTGCCAAGTTTGCTAACTCATGCCTCCATGGCTTGAAAGGAGAAGCTGGAGTGGTGGAGTGTGCTTATGTTGATTCTCAGGTTACAGAACTTCCTTTCTTTGCAACCAAGGTTCGTCTTGGTCGTGCTGGAGCAGAAGAAATATTTCCACTGGGTCCCCTCAATGAGTATGAGAGGATTGGGTTGGAAAAAGCGAAGAAAGAGTTGGCAGGAAGCATCCAGAAGGGAGTAGAATTCATTAAAAAATAA

Protein sequence

>Msa0559280

MEAHAGANQRIARISAHLHPSNFQEGGDVVIDRANCRAKGGAPGFKVAVLGAAGGIGQSLSLLLKMNPLVSVLHLYDVVNTPGVTADVSHMDTGAVVRGFLGQPQLENALTGMDLVVIPAGVPRKPGMTRDDLFKINAGIVRTLCEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTALDVVRANTFVAEVLGVDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTAEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFANSCLHGLKGEAGVVECAYVDSQVTELPFFATKVRLGRAGAEEIFPLGPLNEYERIGLEKAKKELAGSIQKGVEFIKK*