AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0938150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0938150 MtrunA17_Chr6g0454011 98.701 77 1 0 1 77 52 128 2.22e-47 157
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 175 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTACGAATTCCACATATTT+TGG 0.127430 6_3:-9878390 Msa0938150:three_prime_UTR
AACTAAAATCTGGCGGATTA+TGG 0.136246 6_3:-9879002 Msa0938150:three_prime_UTR
TCAGACCTACTTGCGTTTAT+TGG 0.157234 6_3:+9876443 None:intergenic
TCTTGGTCCATCTAATCTTT+TGG 0.218848 6_3:-9877039 Msa0938150:three_prime_UTR
TAATCAAGTGTGAGACTATT+TGG 0.221539 6_3:+9878549 None:intergenic
AAGAAGAGATTCATTCAATT+TGG 0.224656 6_3:-9880356 Msa0938150:CDS
TTATATTAACACACTATTTC+GGG 0.230043 6_3:+9875975 None:intergenic
GCTTCTGCCACAAGTTCTTC+TGG 0.237288 6_3:-9880328 Msa0938150:CDS
ATTATATTAACACACTATTT+CGG 0.244827 6_3:+9875974 None:intergenic
GGTGATGGAACCTGCCTTGC+AGG 0.248489 6_3:+9878239 None:intergenic
TTCTAAATCAAATCTGAAAA+TGG 0.273058 6_3:+9878317 None:intergenic
AACTTACCTTTAGAATTCTT+TGG 0.273137 6_3:-9877863 Msa0938150:three_prime_UTR
CAAGCCTTCAAGGACATTAT+TGG 0.280700 6_3:-9877377 Msa0938150:three_prime_UTR
CTTGCAGCTTATCAAAGAAT+TGG 0.308243 6_3:-9878014 Msa0938150:intron
TAATGACTTTGAATCTTTCC+TGG 0.314365 6_3:-9878478 Msa0938150:three_prime_UTR
AATAAGCTGAAAACAGCTTA+TGG 0.315748 6_3:-9878602 Msa0938150:three_prime_UTR
GATCTACAATAGGGCTCTTT+TGG 0.316121 6_3:-9878768 Msa0938150:three_prime_UTR
TTCAAAGTCATTACAGATCT+AGG 0.319223 6_3:+9878488 None:intergenic
ACTAAAATCTGGCGGATTAT+GGG 0.321784 6_3:-9879001 Msa0938150:three_prime_UTR
CGCTTATTTCCTTAGGAATT+GGG 0.323622 6_3:-9877426 Msa0938150:intron
AAGCTATCATGGAAAGCTTA+TGG 0.327473 6_3:-9878626 Msa0938150:three_prime_UTR
TATGTTGTTCATTTCATATC+AGG 0.333041 6_3:-9876075 Msa0938150:three_prime_UTR
TACGCGTCAGTATCATGTTC+AGG 0.334298 6_3:-9878136 Msa0938150:three_prime_UTR
TAAGAGATTGGTAATCATAA+TGG 0.336437 6_3:+9878935 None:intergenic
ACAACTTGAATAGACTATTC+TGG 0.340292 6_3:+9878823 None:intergenic
TTGCAGCTTATCAAAGAATT+GGG 0.346242 6_3:-9878013 Msa0938150:intron
TAATGATCATTACCAACTTC+TGG 0.350183 6_3:+9877758 None:intergenic
CTTTCTACCACAAGCCTTCA+AGG 0.353925 6_3:-9877387 Msa0938150:three_prime_UTR
TTTGTTGGTGGTTCTTTAAA+GGG 0.354232 6_3:-9880409 Msa0938150:CDS
AACAAAAGAAACCTGCAAAA+AGG 0.354552 6_3:-9877214 Msa0938150:intron
TGGCCGTTACGCGCAGGTGC+AGG 0.356267 6_3:-9875634 Msa0938150:three_prime_UTR
TCCAACTGATGAGTGTATTC+AGG 0.357974 6_3:-9878962 Msa0938150:three_prime_UTR
AGAATATTTATTAAAATCCT+TGG 0.358759 6_3:+9875797 None:intergenic
ATACACACGGGTGGCTGTTT+CGG 0.365078 6_3:+9877331 None:intergenic
ATGAAATGAACAACATATAT+AGG 0.366320 6_3:+9876081 None:intergenic
TTGATTTAGAATTTATTGAT+TGG 0.369829 6_3:-9878305 Msa0938150:three_prime_UTR
ATTAAAATCCTTGGACCATT+GGG 0.372877 6_3:+9875806 None:intergenic
TTGACAGCATTTCGCGAGAT+TGG 0.383945 6_3:-9876502 Msa0938150:three_prime_UTR
CTCTGACATTTGTTCAAAGC+TGG 0.386422 6_3:+9877007 None:intergenic
CACTCATCAGTTGGAGCTAT+AGG 0.386652 6_3:+9878970 None:intergenic
AACATAATGCGATCTACAAT+AGG 0.391621 6_3:-9878778 Msa0938150:three_prime_UTR
TTGGAAATTGCAGGAGCAAT+TGG 0.395250 6_3:-9875699 Msa0938150:three_prime_UTR
TATTAAAATCCTTGGACCAT+TGG 0.396698 6_3:+9875805 None:intergenic
TGATTTAGAATTTATTGATT+GGG 0.406293 6_3:-9878304 Msa0938150:three_prime_UTR
AGGCCGTGAAGGGTTGTATA+TGG 0.406932 6_3:-9879092 Msa0938150:CDS
TTGTCAATTACAGGTTCATC+AGG 0.412901 6_3:+9877235 None:intergenic
TCTCTTATGCTAACTTTGAA+TGG 0.419668 6_3:-9878919 Msa0938150:three_prime_UTR
AAGAAAATTTCCGCGTGCTC+AGG 0.420797 6_3:-9877921 Msa0938150:three_prime_UTR
AATGCTGCAGCCTGCAAGGC+AGG 0.423450 6_3:-9878249 Msa0938150:three_prime_UTR
GTCTGACACATGCGCAGGTT+TGG 0.426500 6_3:-9875770 Msa0938150:three_prime_UTR
GGAACAACAAGTAGTGCTAA+TGG 0.427992 6_3:-9880307 Msa0938150:CDS
AATTTCCGCGTGCTCAGGTA+TGG 0.430756 6_3:-9877916 Msa0938150:three_prime_UTR
AAGAGATTGGTAATCATAAT+GGG 0.433431 6_3:+9878936 None:intergenic
TCAAAGTTAGCATAAGAGAT+TGG 0.436331 6_3:+9878923 None:intergenic
ACAGTTATCAAACTAAAATC+TGG 0.436974 6_3:-9879012 Msa0938150:three_prime_UTR
TTAGGCTCCAAAAGATTAGA+TGG 0.438673 6_3:+9877032 None:intergenic
AGTTTCTTCATAAGCTATCA+TGG 0.439007 6_3:-9878637 Msa0938150:three_prime_UTR
GTCACCAATAATGTCCTTGA+AGG 0.441505 6_3:+9877373 None:intergenic
ATGAGGATTTATCCACTCCT+TGG 0.444928 6_3:-9877814 Msa0938150:three_prime_UTR
AGAACACTGTTGGAAATTGC+AGG 0.445274 6_3:-9875708 Msa0938150:three_prime_UTR
TTGTGCTCGTAAGCAAAAGT+AGG 0.446804 6_3:+9877965 None:intergenic
GTGCGCACTATCCTCGCAAT+GGG 0.451283 6_3:-9875864 Msa0938150:three_prime_UTR
ATTTGTTCAAAGCTGGCATT+AGG 0.452992 6_3:+9877014 None:intergenic
TTACGCGCAGGTGCAGGCGC+GGG 0.453492 6_3:-9875628 None:intergenic
GACTGTTGTGTCTTTCCCAA+TGG 0.455921 6_3:-9875821 Msa0938150:three_prime_UTR
CGATGATTCAGGTAAAAGAC+TGG 0.456397 6_3:-9876526 Msa0938150:intron
CTTAGGAATTGGGCCATATG+TGG 0.458324 6_3:-9877416 Msa0938150:intron
TTCGAACAAGAGCAGGCATT+AGG 0.461274 6_3:-9879066 Msa0938150:CDS
GCGCCTGCACCTGCGCGTAA+CGG 0.462645 6_3:+9875631 None:intergenic
TGGACGACCGGTATGATGCT+TGG 0.463217 6_3:-9876385 Msa0938150:three_prime_UTR
TGAGGATTTATCCACTCCTT+GGG 0.466492 6_3:-9877813 Msa0938150:three_prime_UTR
GTCATCAGGAGGAAAGTAAC+TGG 0.467030 6_3:+9876319 None:intergenic
ATTGCAATTACTTGTCAACT+TGG 0.469215 6_3:-9876188 Msa0938150:three_prime_UTR
TAGAAAGCAACCTCCACATA+TGG 0.476242 6_3:+9877403 None:intergenic
GAACAACAAGTAGTGCTAAT+GGG 0.477817 6_3:-9880306 Msa0938150:CDS
AAACTCATCAAGAGACGATA+AGG 0.479502 6_3:+9876289 None:intergenic
CTTCATATTGAAGGTGTGTC+CGG 0.482214 6_3:-9878190 Msa0938150:three_prime_UTR
ATCTTTCCTGGACACTTCCA+TGG 0.483520 6_3:-9878466 Msa0938150:three_prime_UTR
GGCTGTAAAGATTCTTAGCA+AGG 0.487404 6_3:-9877269 Msa0938150:three_prime_UTR
TGCAGGCTGCAGCATTACTA+AGG 0.488934 6_3:+9878256 None:intergenic
AATTCTAAAGGTAAGTTCAA+TGG 0.489115 6_3:+9877869 None:intergenic
GTCTAGAGTTCTGACTTTGG+TGG 0.489872 6_3:+9876012 None:intergenic
ACATAATGCGATCTACAATA+GGG 0.489941 6_3:-9878777 Msa0938150:three_prime_UTR
GGCCGGTGAAATAGAGCAAA+AGG 0.491840 6_3:-9877792 Msa0938150:three_prime_UTR
TGGACTTGCCACAGGAGTAC+TGG 0.497188 6_3:-9875737 Msa0938150:three_prime_UTR
TGCTCTATTTCACCGGCCCA+AGG 0.499248 6_3:+9877797 None:intergenic
GCAACTCAGAAACGTACCTT+TGG 0.499786 6_3:-9875654 Msa0938150:three_prime_UTR
ATTGGTGCGGAGAAGTGAGC+TGG 0.500223 6_3:+9876461 None:intergenic
ACGCGTCAGTATCATGTTCA+GGG 0.500551 6_3:-9878135 Msa0938150:intron
GATAAGGTTCTCATGTCATC+AGG 0.500570 6_3:+9876305 None:intergenic
TAGCCATATACAACCCTTCA+CGG 0.506857 6_3:+9879089 None:intergenic
GTGTCTTTCCCAATGGTCCA+AGG 0.507255 6_3:-9875814 Msa0938150:three_prime_UTR
GCACTGTCACTTCATATTGA+AGG 0.507693 6_3:-9878199 Msa0938150:three_prime_UTR
GTGCAACAAAGCTCTTGATC+AGG 0.508488 6_3:+9878218 None:intergenic
TATGGGTGGCACCGAGGCAA+TGG 0.508704 6_3:-9877898 Msa0938150:three_prime_UTR
GTTCTAAGCTCACCAGAAGT+TGG 0.509275 6_3:-9877770 Msa0938150:intron
AAAGCTCCTGCCGGCCGCCA+TGG 0.510037 6_3:+9878449 None:intergenic
AAACAATGGTCCAAAATATG+TGG 0.511255 6_3:+9878380 None:intergenic
GTTACGCGCAGGTGCAGGCG+CGG 0.511483 6_3:-9875629 None:intergenic
CGGCCGCCATGGAAGTGTCC+AGG 0.511736 6_3:+9878460 None:intergenic
CTTCAGCAAAGTTCCTGAAA+AGG 0.514868 6_3:-9876949 Msa0938150:intron
TTCACCTATCGTCAAGACTC+TGG 0.524890 6_3:-9876973 Msa0938150:three_prime_UTR
CTAAGGAATGAAAGTTTGCA+TGG 0.525393 6_3:+9878273 None:intergenic
TGGCACCGAGGCAATGGAGT+TGG 0.525912 6_3:-9877892 Msa0938150:three_prime_UTR
ATCTGCAGGATGGGAAAGAA+TGG 0.526729 6_3:-9877078 Msa0938150:intron
GTAGACGGTGTTGGTGGTAT+CGG 0.526787 6_3:+9878156 None:intergenic
AAAATGCCAAAGAATTCTAA+AGG 0.528304 6_3:+9877857 None:intergenic
ACTGTCTAGAGTTCTGACTT+TGG 0.529148 6_3:+9876009 None:intergenic
TGCAGCTTATCAAAGAATTG+GGG 0.531720 6_3:-9878012 Msa0938150:intron
TATATGATCTCCCTTGGTCG+TGG 0.534470 6_3:-9875921 Msa0938150:three_prime_UTR
GGGAGGACGATGTATTCAAC+CGG 0.537132 6_3:+9877986 None:intergenic
CTGGTTAGAAAGAACACTGT+TGG 0.538041 6_3:-9875718 Msa0938150:three_prime_UTR
GATTCTTAGCAAGGGAAAAG+AGG 0.539442 6_3:-9877260 Msa0938150:three_prime_UTR
ATGGCTATTCGAACAAGAGC+AGG 0.541631 6_3:-9879073 Msa0938150:CDS
TTCAAGGACATTATTGGTGA+CGG 0.541943 6_3:-9877371 Msa0938150:three_prime_UTR
GGCAGGAGCTTTACATCACA+TGG 0.542525 6_3:-9878438 Msa0938150:three_prime_UTR
TCATGGTATATGATCTCCCT+TGG 0.543054 6_3:-9875927 Msa0938150:three_prime_UTR
CACCTGCGCGTAACGGCCAA+AGG 0.545475 6_3:+9875638 None:intergenic
ACCTGAATACACTCATCAGT+TGG 0.546283 6_3:+9878961 None:intergenic
GCAGGTTTGGATACGACTAC+TGG 0.547549 6_3:-9875757 Msa0938150:three_prime_UTR
TAGTAATGCTGCAGCCTGCA+AGG 0.547596 6_3:-9878253 Msa0938150:three_prime_UTR
TTAATCGATGTAGGCCGTGA+AGG 0.549348 6_3:-9879103 Msa0938150:intron
GATTTATCCACTCCTTGGGC+CGG 0.550233 6_3:-9877809 Msa0938150:three_prime_UTR
GGGACTGTTAACTTGAAGCC+GGG 0.552126 6_3:-9875843 Msa0938150:three_prime_UTR
AAAGGTACGTTTCTGAGTTG+CGG 0.552699 6_3:+9875656 None:intergenic
GGGGACTGTTAACTTGAAGC+CGG 0.552824 6_3:-9875844 Msa0938150:three_prime_UTR
TCAAAGTCATTACAGATCTA+GGG 0.553515 6_3:+9878489 None:intergenic
TACCTTTGGCCGTTACGCGC+AGG 0.557690 6_3:-9875640 Msa0938150:three_prime_UTR
ACGACTACTGGACTTGCCAC+AGG 0.558396 6_3:-9875745 Msa0938150:three_prime_UTR
GCTGTAAAGATTCTTAGCAA+GGG 0.559862 6_3:-9877268 Msa0938150:three_prime_UTR
TGTGCTCGTAAGCAAAAGTA+GGG 0.562067 6_3:+9877966 None:intergenic
TTTGATTGATGAAAACAGAA+GGG 0.567871 6_3:+9876352 None:intergenic
GGATTCTTTGTTAATACACA+CGG 0.567921 6_3:+9877318 None:intergenic
CTCATAGAATCCACGACCAA+GGG 0.571934 6_3:+9875911 None:intergenic
ATTTCCGCGTGCTCAGGTAT+GGG 0.573729 6_3:-9877915 Msa0938150:three_prime_UTR
TGACGCGTAGACGGTGTTGG+TGG 0.574543 6_3:+9878150 None:intergenic
TATTTCACCGGCCCAAGGAG+TGG 0.574665 6_3:+9877802 None:intergenic
GTGAAGGCCAAGCATCATAC+CGG 0.577363 6_3:+9876378 None:intergenic
TAATCGATGTAGGCCGTGAA+GGG 0.580253 6_3:-9879102 Msa0938150:intron
TCAGCGTCTGACACATGCGC+AGG 0.582447 6_3:-9875775 Msa0938150:three_prime_UTR
ACATGATACTGACGCGTAGA+CGG 0.584044 6_3:+9878141 None:intergenic
AATGGCCAACTCCATTGCCT+CGG 0.585261 6_3:+9877887 None:intergenic
TGGGAAAGACACAACAGTCC+CGG 0.586927 6_3:+9875825 None:intergenic
CAAAGCTCTTGATCAGGTGA+TGG 0.587991 6_3:+9878224 None:intergenic
CCGCACCAATAAACGCAAGT+AGG 0.592444 6_3:-9876448 Msa0938150:three_prime_UTR
TGTGCGCACTATCCTCGCAA+TGG 0.596555 6_3:-9875865 Msa0938150:three_prime_UTR
ATGTGATGTAAAGCTCCTGC+CGG 0.597181 6_3:+9878440 None:intergenic
AAGACCAGAGTCTTGACGAT+AGG 0.605351 6_3:+9876969 None:intergenic
ATAATGTCCTTGAAGGCTTG+TGG 0.611563 6_3:+9877380 None:intergenic
TCCGCGTGCTCAGGTATGGG+TGG 0.616846 6_3:-9877912 Msa0938150:three_prime_UTR
CTTTCTAACCAGTACTCCTG+TGG 0.617928 6_3:+9875729 None:intergenic
AGGAATTGGGCCATATGTGG+AGG 0.619830 6_3:-9877413 Msa0938150:three_prime_UTR
TGTTGTTCCAGAAGAACTTG+TGG 0.621301 6_3:+9880321 None:intergenic
AGTTAACAGTCCCCATTGCG+AGG 0.621654 6_3:+9875853 None:intergenic
CCTACTTGCGTTTATTGGTG+CGG 0.626930 6_3:+9876448 None:intergenic
GATTCTTTGTTAATACACAC+GGG 0.629086 6_3:+9877319 None:intergenic
GATGATTCAGGTAAAAGACT+GGG 0.634111 6_3:-9876525 Msa0938150:intron
TTGGTGCGGAGAAGTGAGCT+GGG 0.636413 6_3:+9876462 None:intergenic
ACTCATAGAATCCACGACCA+AGG 0.637373 6_3:+9875910 None:intergenic
AGTGCGCACATCGTCATCTG+AGG 0.642207 6_3:+9875878 None:intergenic
TACTGACGCGTAGACGGTGT+TGG 0.644212 6_3:+9878147 None:intergenic
GCAGCTTATCAAAGAATTGG+GGG 0.644987 6_3:-9878011 Msa0938150:intron
GTTATCAAACTAAAATCTGG+CGG 0.646259 6_3:-9879009 Msa0938150:three_prime_UTR
CTCAGGTATGGGTGGCACCG+AGG 0.654459 6_3:-9877904 Msa0938150:three_prime_UTR
GATGTGGTTCTTCAAAAGTG+TGG 0.655033 6_3:+9880456 None:intergenic
GAAAACAGAAGGGAAAGTGA+AGG 0.656206 6_3:+9876362 None:intergenic
AGATAGCTCCAAATAAACAA+TGG 0.662953 6_3:+9878366 None:intergenic
AAGGTTCTCATGTCATCAGG+AGG 0.664702 6_3:+9876308 None:intergenic
GCCACCCATACCTGAGCACG+CGG 0.672524 6_3:+9877911 None:intergenic
GGTATCGGTCTGTCAAACAC+CGG 0.679615 6_3:+9878171 None:intergenic
GTTGCGGTGTCGATGATGAG+AGG 0.691853 6_3:+9875672 None:intergenic
TCTTTGTTAATACACACGGG+TGG 0.695600 6_3:+9877322 None:intergenic
GCTCGTAAGCAAAAGTAGGG+AGG 0.715485 6_3:+9877969 None:intergenic
TGCGCACTATCCTCGCAATG+GGG 0.715499 6_3:-9875863 Msa0938150:three_prime_UTR
TTTCCTGGACACTTCCATGG+CGG 0.725472 6_3:-9878463 Msa0938150:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATGATAGTAAAAAAATA+AGG + chr6_3:9875957-9875976 None:intergenic 10.0%
!!! ATTAAGAAAAAAATAGATTT+TGG - chr6_3:9876313-9876332 Msa0938150:three_prime_UTR 10.0%
!! TTACTATCATTTAATTGATT+TGG - chr6_3:9875964-9875983 Msa0938150:three_prime_UTR 15.0%
!!! AAATGATTTTTTTAGCAAAA+TGG - chr6_3:9876373-9876392 Msa0938150:three_prime_UTR 15.0%
!! AAAAAAAATCCAAAACAAAT+AGG - chr6_3:9876471-9876490 Msa0938150:three_prime_UTR 15.0%
!!! TTGATTTAGAATTTATTGAT+TGG - chr6_3:9877815-9877834 Msa0938150:three_prime_UTR 15.0%
!!! TGATTTAGAATTTATTGATT+GGG - chr6_3:9877816-9877835 Msa0938150:three_prime_UTR 15.0%
!! ATAAAATCCATATTATTGAT+AGG - chr6_3:9878042-9878061 Msa0938150:intron 15.0%
!! TAAAATCCATATTATTGATA+GGG - chr6_3:9878043-9878062 Msa0938150:intron 15.0%
!!! AAAATGTAAATGTTTTACTA+TGG - chr6_3:9880010-9880029 Msa0938150:intron 15.0%
!! ATTATATTAACACACTATTT+CGG + chr6_3:9880149-9880168 None:intergenic 15.0%
!! AGAATATTTATTAAAATCCT+TGG + chr6_3:9880326-9880345 None:intergenic 15.0%
!!! TTGAATGTTTTAAATTGATG+TGG + chr6_3:9875683-9875702 None:intergenic 20.0%
!!! CATTTAATTGATTTGGTTAT+TGG - chr6_3:9875971-9875990 Msa0938150:three_prime_UTR 20.0%
!! AAGTGATTAAATATAATCAC+CGG - chr6_3:9876105-9876124 Msa0938150:three_prime_UTR 20.0%
!!! TCTATTTTTTTCTTAATGCA+AGG + chr6_3:9876310-9876329 None:intergenic 20.0%
!!! TGAAATAGATTTTCATTTTG+AGG - chr6_3:9876346-9876365 Msa0938150:three_prime_UTR 20.0%
!! TTCAGTGTAATTATATGTTT+CGG - chr6_3:9876552-9876571 Msa0938150:intron 20.0%
!! TCAAAATCCAATAAAAGTAA+AGG + chr6_3:9876696-9876715 None:intergenic 20.0%
!!! TCAGTTATTTAGTTTAGTTT+TGG - chr6_3:9876913-9876932 Msa0938150:intron 20.0%
!! AAAACAGAATTTCATATACT+AGG + chr6_3:9876971-9876990 None:intergenic 20.0%
!! AAAGAATTCCAATAAAAAAG+GGG + chr6_3:9877711-9877730 None:intergenic 20.0%
!! GAAAGAATTCCAATAAAAAA+GGG + chr6_3:9877712-9877731 None:intergenic 20.0%
!! AGAAAGAATTCCAATAAAAA+AGG + chr6_3:9877713-9877732 None:intergenic 20.0%
!! TTCTAAATCAAATCTGAAAA+TGG + chr6_3:9877806-9877825 None:intergenic 20.0%
!! ACAAAGATTAAAGTTCTATT+TGG + chr6_3:9878650-9878669 None:intergenic 20.0%
!! TTATACCTAATATAGTGTTA+GGG - chr6_3:9879245-9879264 Msa0938150:intron 20.0%
!! TTATAGAAATAAGCTACAAA+CGG + chr6_3:9879370-9879389 None:intergenic 20.0%
!!! GCATATAGTTTTGTTAATTT+AGG - chr6_3:9879968-9879987 Msa0938150:intron 20.0%
!!! TATAGTTTTGTTAATTTAGG+AGG - chr6_3:9879971-9879990 Msa0938150:intron 20.0%
!!! TAAATGTTTTACTATGGAAT+AGG - chr6_3:9880016-9880035 Msa0938150:intron 20.0%
!! ATGAAATGAACAACATATAT+AGG + chr6_3:9880042-9880061 None:intergenic 20.0%
!! TTATATTAACACACTATTTC+GGG + chr6_3:9880148-9880167 None:intergenic 20.0%
!!! GTTATAATTTTATGAGTTCA+TGG - chr6_3:9880176-9880195 Msa0938150:intron 20.0%
!!! CATTCAAGTTCAAATTTTGT+TGG - chr6_3:9875696-9875715 Msa0938150:three_prime_UTR 25.0%
! AAGAAGAGATTCATTCAATT+TGG - chr6_3:9875764-9875783 Msa0938150:three_prime_UTR 25.0%
! ATAAGACAAATCAGTGAAAA+AGG + chr6_3:9875920-9875939 None:intergenic 25.0%
!!! TCACTGATTTGTCTTATATT+TGG - chr6_3:9875923-9875942 Msa0938150:three_prime_UTR 25.0%
!! CCATTTTCTCATATTATTAC+CGG + chr6_3:9876085-9876104 None:intergenic 25.0%
!! CCATTTTATCAAATCATTAC+CGG + chr6_3:9876127-9876146 None:intergenic 25.0%
!! GTGATTTTCTCAATTATTAG+CGG + chr6_3:9876528-9876547 None:intergenic 25.0%
! ACAGTTATCAAACTAAAATC+TGG - chr6_3:9877108-9877127 Msa0938150:intron 25.0%
!! AAGAGATTGGTAATCATAAT+GGG + chr6_3:9877187-9877206 None:intergenic 25.0%
!! TAAGAGATTGGTAATCATAA+TGG + chr6_3:9877188-9877207 None:intergenic 25.0%
!!! TAACTTTGAATGGTCTTTTT+TGG - chr6_3:9877211-9877230 Msa0938150:intron 25.0%
!! TTTCTTCTCTTTCACATTTT+TGG - chr6_3:9877267-9877286 Msa0938150:three_prime_UTR 25.0%
!! ATTTTGGACCATTGTTTATT+TGG - chr6_3:9877746-9877765 Msa0938150:intron 25.0%
! AAATCACCCTATCAATAATA+TGG + chr6_3:9878052-9878071 None:intergenic 25.0%
!! AATTCTAAAGGTAAGTTCAA+TGG + chr6_3:9878254-9878273 None:intergenic 25.0%
!!! AACTTACCTTTAGAATTCTT+TGG - chr6_3:9878257-9878276 Msa0938150:three_prime_UTR 25.0%
! AAAATGCCAAAGAATTCTAA+AGG + chr6_3:9878266-9878285 None:intergenic 25.0%
!!! TGGTAATGATCATTAGTTTT+TGG - chr6_3:9878370-9878389 Msa0938150:three_prime_UTR 25.0%
! GGATATTATCATACTAAGTT+TGG - chr6_3:9878391-9878410 Msa0938150:three_prime_UTR 25.0%
! AATAAGCTAAAAGCAGTTTA+GGG + chr6_3:9878499-9878518 None:intergenic 25.0%
! AAATAAGCTAAAAGCAGTTT+AGG + chr6_3:9878500-9878519 None:intergenic 25.0%
!!! ATTTTTTGCAGATGCTAAAA+GGG + chr6_3:9878826-9878845 None:intergenic 25.0%
!!! TTTCTTTTGTTGTCAATTAC+AGG + chr6_3:9878897-9878916 None:intergenic 25.0%
!!! GTTCTACAAATTTTGTTTCT+TGG - chr6_3:9879064-9879083 Msa0938150:CDS 25.0%
!! CTAGATTGCAATTTTATTAG+AGG + chr6_3:9879225-9879244 None:intergenic 25.0%
! GTTATACCTAATATAGTGTT+AGG - chr6_3:9879244-9879263 Msa0938150:intron 25.0%
! TAAAATAAGTCAATCCAAAC+AGG + chr6_3:9879271-9879290 None:intergenic 25.0%
! TATAGAAATAAGCTACAAAC+GGG + chr6_3:9879369-9879388 None:intergenic 25.0%
! TTTGATTGATGAAAACAGAA+GGG + chr6_3:9879771-9879790 None:intergenic 25.0%
!!! TTTTGATTGATGAAAACAGA+AGG + chr6_3:9879772-9879791 None:intergenic 25.0%
! TATGTTGTTCATTTCATATC+AGG - chr6_3:9880045-9880064 Msa0938150:intron 25.0%
! TCAAGTTCAAATTTTGTTGG+TGG - chr6_3:9875699-9875718 Msa0938150:three_prime_UTR 30.0%
!!! TTTTGTTGGTGGTTCTTTAA+AGG - chr6_3:9875710-9875729 Msa0938150:three_prime_UTR 30.0%
!! TTTGTTGGTGGTTCTTTAAA+GGG - chr6_3:9875711-9875730 Msa0938150:three_prime_UTR 30.0%
! AGATTTTACTTCAACTTCAC+TGG - chr6_3:9875837-9875856 Msa0938150:three_prime_UTR 30.0%
GTCATGTCTGTAAATACATT+AGG + chr6_3:9876053-9876072 None:intergenic 30.0%
CCGGTAATAATATGAGAAAA+TGG - chr6_3:9876082-9876101 Msa0938150:three_prime_UTR 30.0%
CCGGTAATGATTTGATAAAA+TGG - chr6_3:9876124-9876143 Msa0938150:three_prime_UTR 30.0%
ATGGAAGCAATTGAATGTTA+CGG - chr6_3:9876143-9876162 Msa0938150:three_prime_UTR 30.0%
! GTAATTATATGTTTCGGTGT+CGG - chr6_3:9876558-9876577 Msa0938150:intron 30.0%
GATCTTCTCAACATTTGAAA+AGG + chr6_3:9876666-9876685 None:intergenic 30.0%
AAATGTTGAGAAGATCACAA+TGG - chr6_3:9876670-9876689 Msa0938150:intron 30.0%
!! ACAATGGCCTTTACTTTTAT+TGG - chr6_3:9876686-9876705 Msa0938150:intron 30.0%
! CTACATCGATTAACACAAAA+AGG + chr6_3:9877010-9877029 None:intergenic 30.0%
! CTTTTTGTGTTAATCGATGT+AGG - chr6_3:9877008-9877027 Msa0938150:three_prime_UTR 30.0%
GTTATCAAACTAAAATCTGG+CGG - chr6_3:9877111-9877130 Msa0938150:intron 30.0%
TCAAAGTTAGCATAAGAGAT+TGG + chr6_3:9877200-9877219 None:intergenic 30.0%
TCTCTTATGCTAACTTTGAA+TGG - chr6_3:9877201-9877220 Msa0938150:intron 30.0%
ACAACTTGAATAGACTATTC+TGG + chr6_3:9877300-9877319 None:intergenic 30.0%
AACATAATGCGATCTACAAT+AGG - chr6_3:9877342-9877361 Msa0938150:three_prime_UTR 30.0%
ACATAATGCGATCTACAATA+GGG - chr6_3:9877343-9877362 Msa0938150:three_prime_UTR 30.0%
AGTTTCTTCATAAGCTATCA+TGG - chr6_3:9877483-9877502 Msa0938150:intron 30.0%
AATAAGCTGAAAACAGCTTA+TGG - chr6_3:9877518-9877537 Msa0938150:intron 30.0%
TAATCAAGTGTGAGACTATT+TGG + chr6_3:9877574-9877593 None:intergenic 30.0%
TCAAAGTCATTACAGATCTA+GGG + chr6_3:9877634-9877653 None:intergenic 30.0%
TTCAAAGTCATTACAGATCT+AGG + chr6_3:9877635-9877654 None:intergenic 30.0%
TAATGACTTTGAATCTTTCC+TGG - chr6_3:9877642-9877661 Msa0938150:intron 30.0%
! TCTACGAATTCCACATATTT+TGG - chr6_3:9877730-9877749 Msa0938150:intron 30.0%
AAACAATGGTCCAAAATATG+TGG + chr6_3:9877743-9877762 None:intergenic 30.0%
AGATAGCTCCAAATAAACAA+TGG + chr6_3:9877757-9877776 None:intergenic 30.0%
!! ATCTGAGTTCTTTTGATTCA+AGG - chr6_3:9877773-9877792 Msa0938150:three_prime_UTR 30.0%
TTGCAGCTTATCAAAGAATT+GGG - chr6_3:9878107-9878126 Msa0938150:intron 30.0%
! TACGAGCACAAAATTTTTGT+CGG - chr6_3:9878167-9878186 Msa0938150:three_prime_UTR 30.0%
! CGCAAAAACTTTAAAAGATG+AGG - chr6_3:9878289-9878308 Msa0938150:three_prime_UTR 30.0%
TAATGATCATTACCAACTTC+TGG + chr6_3:9878365-9878384 None:intergenic 30.0%
! CTTATTTGCATAAGTTTTCC+AGG - chr6_3:9878513-9878532 Msa0938150:three_prime_UTR 30.0%
GATTCTTTGTTAATACACAC+GGG + chr6_3:9878804-9878823 None:intergenic 30.0%
GGATTCTTTGTTAATACACA+CGG + chr6_3:9878805-9878824 None:intergenic 30.0%
!!! CATTTTTTGCAGATGCTAAA+AGG + chr6_3:9878827-9878846 None:intergenic 30.0%
! CTTTTAGCATCTGCAAAAAA+TGG - chr6_3:9878825-9878844 Msa0938150:three_prime_UTR 30.0%
AACAAAAGAAACCTGCAAAA+AGG - chr6_3:9878906-9878925 Msa0938150:three_prime_UTR 30.0%
! GAGTTTGAAATGAAACTTGA+TGG - chr6_3:9879014-9879033 Msa0938150:three_prime_UTR 30.0%
AGACTATTTGTAAGAGCTTA+GGG - chr6_3:9879318-9879337 Msa0938150:intron 30.0%
!! CTTATTTCTATAAGCTCTCT+AGG - chr6_3:9879377-9879396 Msa0938150:intron 30.0%
TTCTCAAAGTCATAATATCG+AGG - chr6_3:9879534-9879553 Msa0938150:intron 30.0%
!! TGCATTTTTGGATGAGTTTT+TGG - chr6_3:9879715-9879734 Msa0938150:intron 30.0%
ATTGCAATTACTTGTCAACT+TGG - chr6_3:9879932-9879951 Msa0938150:intron 30.0%
ATTAAAATCCTTGGACCATT+GGG + chr6_3:9880317-9880336 None:intergenic 30.0%
TATTAAAATCCTTGGACCAT+TGG + chr6_3:9880318-9880337 None:intergenic 30.0%
GAACAACAAGTAGTGCTAAT+GGG - chr6_3:9875814-9875833 Msa0938150:three_prime_UTR 35.0%
TGGAAGCAATTGAATGTTAC+GGG - chr6_3:9876144-9876163 Msa0938150:three_prime_UTR 35.0%
! ACATGTAGGCCTATTTGTTT+TGG + chr6_3:9876483-9876502 None:intergenic 35.0%
TTCTCAATTATTAGCGGTGT+CGG + chr6_3:9876522-9876541 None:intergenic 35.0%
!! TTGGCATTGACAATGCTTAA+TGG - chr6_3:9876932-9876951 Msa0938150:intron 35.0%
!! AACTAAAATCTGGCGGATTA+TGG - chr6_3:9877118-9877137 Msa0938150:intron 35.0%
!! ACTAAAATCTGGCGGATTAT+GGG - chr6_3:9877119-9877138 Msa0938150:intron 35.0%
!!! AATAGGGCTCTTTTGGTTTT+AGG - chr6_3:9877359-9877378 Msa0938150:three_prime_UTR 35.0%
AAGCTATCATGGAAAGCTTA+TGG - chr6_3:9877494-9877513 Msa0938150:intron 35.0%
!!! GATCTAGGGTCTATTTTGAT+TGG + chr6_3:9877620-9877639 None:intergenic 35.0%
!!! CATGGTTTCCCCTTTTTTAT+TGG - chr6_3:9877700-9877719 Msa0938150:intron 35.0%
CTAAGGAATGAAAGTTTGCA+TGG + chr6_3:9877850-9877869 None:intergenic 35.0%
! GTTTGTGTTTTCATGAGTGT+TGG - chr6_3:9878007-9878026 Msa0938150:three_prime_UTR 35.0%
CTTTGATAAGCTGCAAGAAA+CGG + chr6_3:9878103-9878122 None:intergenic 35.0%
CTTGCAGCTTATCAAAGAAT+TGG - chr6_3:9878106-9878125 Msa0938150:intron 35.0%
TGCAGCTTATCAAAGAATTG+GGG - chr6_3:9878108-9878127 Msa0938150:intron 35.0%
! GCGGAAATTTTCTTGAAAAC+GGG + chr6_3:9878193-9878212 None:intergenic 35.0%
! CGCGGAAATTTTCTTGAAAA+CGG + chr6_3:9878194-9878213 None:intergenic 35.0%
! AACCTTTTGCTCTATTTCAC+CGG + chr6_3:9878333-9878352 None:intergenic 35.0%
! ACTGTTTTCATAAGCTATCC+TGG + chr6_3:9878534-9878553 None:intergenic 35.0%
TCTCATTCGCTTATTTCCTT+AGG - chr6_3:9878687-9878706 Msa0938150:three_prime_UTR 35.0%
TCGCTTATTTCCTTAGGAAT+TGG - chr6_3:9878693-9878712 Msa0938150:three_prime_UTR 35.0%
CGCTTATTTCCTTAGGAATT+GGG - chr6_3:9878694-9878713 Msa0938150:three_prime_UTR 35.0%
TTCAAGGACATTATTGGTGA+CGG - chr6_3:9878749-9878768 Msa0938150:three_prime_UTR 35.0%
AGCATCTGCAAAAAATGGTT+TGG - chr6_3:9878830-9878849 Msa0938150:three_prime_UTR 35.0%
GCTGTAAAGATTCTTAGCAA+GGG - chr6_3:9878852-9878871 Msa0938150:three_prime_UTR 35.0%
TTGTCAATTACAGGTTCATC+AGG + chr6_3:9878888-9878907 None:intergenic 35.0%
AAGAAACCTGCAAAAAGGTT+AGG - chr6_3:9878911-9878930 Msa0938150:three_prime_UTR 35.0%
AGAAACCTGCAAAAAGGTTA+GGG - chr6_3:9878912-9878931 Msa0938150:three_prime_UTR 35.0%
! TCTTGGTCCATCTAATCTTT+TGG - chr6_3:9879081-9879100 Msa0938150:CDS 35.0%
TTAGGCTCCAAAAGATTAGA+TGG + chr6_3:9879091-9879110 None:intergenic 35.0%
ATTTGTTCAAAGCTGGCATT+AGG + chr6_3:9879109-9879128 None:intergenic 35.0%
! CAGAAAGATGTTACCTTTTC+AGG + chr6_3:9879187-9879206 None:intergenic 35.0%
GAGACTATTTGTAAGAGCTT+AGG - chr6_3:9879317-9879336 Msa0938150:intron 35.0%
ATAAGCTACAAACGGGATTA+TGG + chr6_3:9879362-9879381 None:intergenic 35.0%
!! GCATTGTTTTACGATGATTC+AGG - chr6_3:9879583-9879602 Msa0938150:intron 35.0%
GATGATTCAGGTAAAAGACT+GGG - chr6_3:9879595-9879614 Msa0938150:intron 35.0%
CTCATCCAAAAATGCAAATG+CGG + chr6_3:9879711-9879730 None:intergenic 35.0%
AAACTCATCAAGAGACGATA+AGG + chr6_3:9879834-9879853 None:intergenic 35.0%
! ATCGTCTCTTGATGAGTTTT+TGG - chr6_3:9879835-9879854 Msa0938150:intron 35.0%
TGAAAAAAACTGTTGCAGGA+AGG - chr6_3:9879873-9879892 Msa0938150:intron 35.0%
GATGTGGTTCTTCAAAAGTG+TGG + chr6_3:9875667-9875686 None:intergenic 40.0%
TGTTGTTCCAGAAGAACTTG+TGG + chr6_3:9875802-9875821 None:intergenic 40.0%
GGAACAACAAGTAGTGCTAA+TGG - chr6_3:9875813-9875832 Msa0938150:three_prime_UTR 40.0%
!!! ACTGGTTTTCCTTTTCCACT+TGG - chr6_3:9875855-9875874 Msa0938150:three_prime_UTR 40.0%
ATGGTGAGTCTATTGAGGAA+AGG + chr6_3:9875882-9875901 None:intergenic 40.0%
TCCTCAATAGACTCACCATT+AGG - chr6_3:9875883-9875902 Msa0938150:three_prime_UTR 40.0%
TCCTAATGGTGAGTCTATTG+AGG + chr6_3:9875887-9875906 None:intergenic 40.0%
AAGGAAAACCTCAGTCCTAA+TGG + chr6_3:9875901-9875920 None:intergenic 40.0%
CAGACATGACACTTAAACAC+CGG - chr6_3:9876063-9876082 Msa0938150:three_prime_UTR 40.0%
GACAATGCTTAATGGCATGT+TGG - chr6_3:9876940-9876959 Msa0938150:intron 40.0%
TAGCCATATACAACCCTTCA+CGG + chr6_3:9877034-9877053 None:intergenic 40.0%
TCCAACTGATGAGTGTATTC+AGG - chr6_3:9877158-9877177 Msa0938150:intron 40.0%
ACCTGAATACACTCATCAGT+TGG + chr6_3:9877162-9877181 None:intergenic 40.0%
! GATCTACAATAGGGCTCTTT+TGG - chr6_3:9877352-9877371 Msa0938150:three_prime_UTR 40.0%
! GCACTGTCACTTCATATTGA+AGG - chr6_3:9877921-9877940 Msa0938150:three_prime_UTR 40.0%
! CTTCATATTGAAGGTGTGTC+CGG - chr6_3:9877930-9877949 Msa0938150:three_prime_UTR 40.0%
!!! TTCATGAGTGTTGGTTTTGC+AGG - chr6_3:9878016-9878035 Msa0938150:intron 40.0%
GCAGCTTATCAAAGAATTGG+GGG - chr6_3:9878109-9878128 Msa0938150:intron 40.0%
TGTGCTCGTAAGCAAAAGTA+GGG + chr6_3:9878157-9878176 None:intergenic 40.0%
TTGTGCTCGTAAGCAAAAGT+AGG + chr6_3:9878158-9878177 None:intergenic 40.0%
ATGAGGATTTATCCACTCCT+TGG - chr6_3:9878306-9878325 Msa0938150:three_prime_UTR 40.0%
TGAGGATTTATCCACTCCTT+GGG - chr6_3:9878307-9878326 Msa0938150:three_prime_UTR 40.0%
TAGAAAGCAACCTCCACATA+TGG + chr6_3:9878720-9878739 None:intergenic 40.0%
ATAATGTCCTTGAAGGCTTG+TGG + chr6_3:9878743-9878762 None:intergenic 40.0%
CAAGCCTTCAAGGACATTAT+TGG - chr6_3:9878743-9878762 Msa0938150:three_prime_UTR 40.0%
GTCACCAATAATGTCCTTGA+AGG + chr6_3:9878750-9878769 None:intergenic 40.0%
TCTTTGTTAATACACACGGG+TGG + chr6_3:9878801-9878820 None:intergenic 40.0%
GGCTGTAAAGATTCTTAGCA+AGG - chr6_3:9878851-9878870 Msa0938150:three_prime_UTR 40.0%
GATTCTTAGCAAGGGAAAAG+AGG - chr6_3:9878860-9878879 Msa0938150:three_prime_UTR 40.0%
AAGTGAGTTGCGTACTTTAG+AGG - chr6_3:9878972-9878991 Msa0938150:three_prime_UTR 40.0%
! ACTTGATGGTTGTAATCTGC+AGG - chr6_3:9879028-9879047 Msa0938150:exon 40.0%
ATGGTTGTAATCTGCAGGAT+GGG - chr6_3:9879033-9879052 Msa0938150:exon 40.0%
CTCTGACATTTGTTCAAAGC+TGG + chr6_3:9879116-9879135 None:intergenic 40.0%
CTTCAGCAAAGTTCCTGAAA+AGG - chr6_3:9879171-9879190 Msa0938150:intron 40.0%
ACAGGCCCTAACACTATATT+AGG + chr6_3:9879253-9879272 None:intergenic 40.0%
ATATAGTGTTAGGGCCTGTT+TGG - chr6_3:9879254-9879273 Msa0938150:intron 40.0%
CGATGATTCAGGTAAAAGAC+TGG - chr6_3:9879594-9879613 Msa0938150:intron 40.0%
TCAGACCTACTTGCGTTTAT+TGG + chr6_3:9879680-9879699 None:intergenic 40.0%
GAAAACAGAAGGGAAAGTGA+AGG + chr6_3:9879761-9879780 None:intergenic 40.0%
GATAAGGTTCTCATGTCATC+AGG + chr6_3:9879818-9879837 None:intergenic 40.0%
!!! GATGAGTTTTTGGTCTCAGT+TGG - chr6_3:9879845-9879864 Msa0938150:intron 40.0%
GCTGTGAAAAAAACTGTTGC+AGG - chr6_3:9879869-9879888 Msa0938150:intron 40.0%
! ACTGTCTAGAGTTCTGACTT+TGG + chr6_3:9880114-9880133 None:intergenic 40.0%
TCATGGTATATGATCTCCCT+TGG - chr6_3:9880193-9880212 Msa0938150:intron 40.0%
CTGGTTAGAAAGAACACTGT+TGG - chr6_3:9880402-9880421 Msa0938150:CDS 40.0%
AGAACACTGTTGGAAATTGC+AGG - chr6_3:9880412-9880431 Msa0938150:CDS 40.0%
TTGGAAATTGCAGGAGCAAT+TGG - chr6_3:9880421-9880440 Msa0938150:CDS 40.0%
! AAAGGTACGTTTCTGAGTTG+CGG + chr6_3:9880467-9880486 None:intergenic 40.0%
AGGAAAGGACCAAGTGGAAA+AGG + chr6_3:9875867-9875886 None:intergenic 45.0%
CTATTGAGGAAAGGACCAAG+TGG + chr6_3:9875873-9875892 None:intergenic 45.0%
TAGACTCACCATTAGGACTG+AGG - chr6_3:9875890-9875909 Msa0938150:three_prime_UTR 45.0%
TGTCAGTGTCACACACATGT+AGG + chr6_3:9876497-9876516 None:intergenic 45.0%
CTATATGTCAGTGTCGTGTC+TGG + chr6_3:9876768-9876787 None:intergenic 45.0%
TACATGTGTCAGTGTCGCAT+TGG - chr6_3:9876831-9876850 Msa0938150:intron 45.0%
TTAATCGATGTAGGCCGTGA+AGG - chr6_3:9877017-9877036 Msa0938150:three_prime_UTR 45.0%
TAATCGATGTAGGCCGTGAA+GGG - chr6_3:9877018-9877037 Msa0938150:three_prime_UTR 45.0%
ATGGCTATTCGAACAAGAGC+AGG - chr6_3:9877047-9877066 Msa0938150:three_prime_UTR 45.0%
TTCGAACAAGAGCAGGCATT+AGG - chr6_3:9877054-9877073 Msa0938150:three_prime_UTR 45.0%
CACTCATCAGTTGGAGCTAT+AGG + chr6_3:9877153-9877172 None:intergenic 45.0%
ATCTTTCCTGGACACTTCCA+TGG - chr6_3:9877654-9877673 Msa0938150:intron 45.0%
ATGTGATGTAAAGCTCCTGC+CGG + chr6_3:9877683-9877702 None:intergenic 45.0%
CAAAGCTCTTGATCAGGTGA+TGG + chr6_3:9877899-9877918 None:intergenic 45.0%
GTGCAACAAAGCTCTTGATC+AGG + chr6_3:9877905-9877924 None:intergenic 45.0%
ACATGATACTGACGCGTAGA+CGG + chr6_3:9877982-9878001 None:intergenic 45.0%
TACGCGTCAGTATCATGTTC+AGG - chr6_3:9877984-9878003 Msa0938150:three_prime_UTR 45.0%
ACGCGTCAGTATCATGTTCA+GGG - chr6_3:9877985-9878004 Msa0938150:three_prime_UTR 45.0%
TATCAAAGAATTGGGGGCTC+CGG - chr6_3:9878115-9878134 Msa0938150:intron 45.0%
AAGAAAATTTCCGCGTGCTC+AGG - chr6_3:9878199-9878218 Msa0938150:three_prime_UTR 45.0%
! GTTCTAAGCTCACCAGAAGT+TGG - chr6_3:9878350-9878369 Msa0938150:three_prime_UTR 45.0%
CACATATGGCCCAATTCCTA+AGG + chr6_3:9878706-9878725 None:intergenic 45.0%
CTTAGGAATTGGGCCATATG+TGG - chr6_3:9878704-9878723 Msa0938150:three_prime_UTR 45.0%
CTTTCTACCACAAGCCTTCA+AGG - chr6_3:9878733-9878752 Msa0938150:three_prime_UTR 45.0%
GATGGTTGTAATCTGCAGGA+TGG - chr6_3:9879032-9879051 Msa0938150:exon 45.0%
ATCTGCAGGATGGGAAAGAA+TGG - chr6_3:9879042-9879061 Msa0938150:CDS 45.0%
TTCACCTATCGTCAAGACTC+TGG - chr6_3:9879147-9879166 Msa0938150:intron 45.0%
AAGACCAGAGTCTTGACGAT+AGG + chr6_3:9879154-9879173 None:intergenic 45.0%
TTGACAGCATTTCGCGAGAT+TGG - chr6_3:9879618-9879637 Msa0938150:intron 45.0%
CCTACTTGCGTTTATTGGTG+CGG + chr6_3:9879675-9879694 None:intergenic 45.0%
! TCGTGCCGCATTTGCATTTT+TGG - chr6_3:9879703-9879722 Msa0938150:intron 45.0%
!! TGGATGAGTTTTTGGACGAC+CGG - chr6_3:9879723-9879742 Msa0938150:intron 45.0%
GTCATCAGGAGGAAAGTAAC+TGG + chr6_3:9879804-9879823 None:intergenic 45.0%
AAGGTTCTCATGTCATCAGG+AGG + chr6_3:9879815-9879834 None:intergenic 45.0%
! GTCTAGAGTTCTGACTTTGG+TGG + chr6_3:9880111-9880130 None:intergenic 45.0%
TATATGATCTCCCTTGGTCG+TGG - chr6_3:9880199-9880218 Msa0938150:intron 45.0%
CTCATAGAATCCACGACCAA+GGG + chr6_3:9880212-9880231 None:intergenic 45.0%
ACTCATAGAATCCACGACCA+AGG + chr6_3:9880213-9880232 None:intergenic 45.0%
GACTGTTGTGTCTTTCCCAA+TGG - chr6_3:9880299-9880318 Msa0938150:CDS 45.0%
CTTTCTAACCAGTACTCCTG+TGG + chr6_3:9880394-9880413 None:intergenic 45.0%
GCAACTCAGAAACGTACCTT+TGG - chr6_3:9880466-9880485 Msa0938150:CDS 45.0%
GCTTCTGCCACAAGTTCTTC+TGG - chr6_3:9875792-9875811 Msa0938150:three_prime_UTR 50.0%
ACGACACATGTCCAACACCA+GGG - chr6_3:9876583-9876602 Msa0938150:intron 50.0%
TGTATCCTGATCCCTGGTGT+TGG + chr6_3:9876597-9876616 None:intergenic 50.0%
TGTCAGTGTCGCATTGGAGT+CGG - chr6_3:9876837-9876856 Msa0938150:intron 50.0%
AGTCGGACACTGACACATGT+TGG - chr6_3:9876854-9876873 Msa0938150:intron 50.0%
ACACATGTTGGACTCCAGAC+AGG - chr6_3:9876866-9876885 Msa0938150:intron 50.0%
AGGCCGTGAAGGGTTGTATA+TGG - chr6_3:9877028-9877047 Msa0938150:three_prime_UTR 50.0%
TTTCCTGGACACTTCCATGG+CGG - chr6_3:9877657-9877676 Msa0938150:intron 50.0%
GGCAGGAGCTTTACATCACA+TGG - chr6_3:9877682-9877701 Msa0938150:intron 50.0%
TGCAGGCTGCAGCATTACTA+AGG + chr6_3:9877867-9877886 None:intergenic 50.0%
TAGTAATGCTGCAGCCTGCA+AGG - chr6_3:9877867-9877886 Msa0938150:three_prime_UTR 50.0%
!! GGTATCGGTCTGTCAAACAC+CGG + chr6_3:9877952-9877971 None:intergenic 50.0%
!! GTAGACGGTGTTGGTGGTAT+CGG + chr6_3:9877967-9877986 None:intergenic 50.0%
GGGAGGACGATGTATTCAAC+CGG + chr6_3:9878137-9878156 None:intergenic 50.0%
GCTCGTAAGCAAAAGTAGGG+AGG + chr6_3:9878154-9878173 None:intergenic 50.0%
AATTTCCGCGTGCTCAGGTA+TGG - chr6_3:9878204-9878223 Msa0938150:three_prime_UTR 50.0%
ATTTCCGCGTGCTCAGGTAT+GGG - chr6_3:9878205-9878224 Msa0938150:three_prime_UTR 50.0%
AATGGCCAACTCCATTGCCT+CGG + chr6_3:9878236-9878255 None:intergenic 50.0%
GATTTATCCACTCCTTGGGC+CGG - chr6_3:9878311-9878330 Msa0938150:three_prime_UTR 50.0%
GGCCGGTGAAATAGAGCAAA+AGG - chr6_3:9878328-9878347 Msa0938150:three_prime_UTR 50.0%
AGGAATTGGGCCATATGTGG+AGG - chr6_3:9878707-9878726 Msa0938150:three_prime_UTR 50.0%
ATACACACGGGTGGCTGTTT+CGG + chr6_3:9878792-9878811 None:intergenic 50.0%
! ACGAGCCCTAACCTTTTTGC+AGG + chr6_3:9878920-9878939 None:intergenic 50.0%
CCGCACCAATAAACGCAAGT+AGG - chr6_3:9879672-9879691 Msa0938150:intron 50.0%
GTGAAGGCCAAGCATCATAC+CGG + chr6_3:9879745-9879764 None:intergenic 50.0%
AGTTAACAGTCCCCATTGCG+AGG + chr6_3:9880270-9880289 None:intergenic 50.0%
! GGGGACTGTTAACTTGAAGC+CGG - chr6_3:9880276-9880295 Msa0938150:intron 50.0%
! GGGACTGTTAACTTGAAGCC+GGG - chr6_3:9880277-9880296 Msa0938150:intron 50.0%
TGGGAAAGACACAACAGTCC+CGG + chr6_3:9880298-9880317 None:intergenic 50.0%
GTGTCTTTCCCAATGGTCCA+AGG - chr6_3:9880306-9880325 Msa0938150:CDS 50.0%
GCAGGTTTGGATACGACTAC+TGG - chr6_3:9880363-9880382 Msa0938150:CDS 50.0%
CACGACACATGTCCAACACC+AGG - chr6_3:9876582-9876601 Msa0938150:intron 55.0%
CATGTCCAACACCAGGGATC+AGG - chr6_3:9876589-9876608 Msa0938150:intron 55.0%
CCACTCTGTATCCTGATCCC+TGG + chr6_3:9876603-9876622 None:intergenic 55.0%
CCAGGGATCAGGATACAGAG+TGG - chr6_3:9876600-9876619 Msa0938150:intron 55.0%
ATGTTGGACTCCAGACAGGC+AGG - chr6_3:9876870-9876889 Msa0938150:intron 55.0%
TCAAGATGTGCCTGCCTGTC+TGG + chr6_3:9876883-9876902 None:intergenic 55.0%
TACTGACGCGTAGACGGTGT+TGG + chr6_3:9877976-9877995 None:intergenic 55.0%
TATTTCACCGGCCCAAGGAG+TGG + chr6_3:9878321-9878340 None:intergenic 55.0%
TGCTCTATTTCACCGGCCCA+AGG + chr6_3:9878326-9878345 None:intergenic 55.0%
TTGGTGCGGAGAAGTGAGCT+GGG + chr6_3:9879661-9879680 None:intergenic 55.0%
ATTGGTGCGGAGAAGTGAGC+TGG + chr6_3:9879662-9879681 None:intergenic 55.0%
TGGACGACCGGTATGATGCT+TGG - chr6_3:9879735-9879754 Msa0938150:intron 55.0%
AGTGCGCACATCGTCATCTG+AGG + chr6_3:9880245-9880264 None:intergenic 55.0%
TGTGCGCACTATCCTCGCAA+TGG - chr6_3:9880255-9880274 Msa0938150:intron 55.0%
GTGCGCACTATCCTCGCAAT+GGG - chr6_3:9880256-9880275 Msa0938150:intron 55.0%
TGCGCACTATCCTCGCAATG+GGG - chr6_3:9880257-9880276 Msa0938150:intron 55.0%
GTCTGACACATGCGCAGGTT+TGG - chr6_3:9880350-9880369 Msa0938150:CDS 55.0%
ACGACTACTGGACTTGCCAC+AGG - chr6_3:9880375-9880394 Msa0938150:CDS 55.0%
! TGGACTTGCCACAGGAGTAC+TGG - chr6_3:9880383-9880402 Msa0938150:CDS 55.0%
!! GTTGCGGTGTCGATGATGAG+AGG + chr6_3:9880451-9880470 None:intergenic 55.0%
AATGCTGCAGCCTGCAAGGC+AGG - chr6_3:9877871-9877890 Msa0938150:three_prime_UTR 60.0%
!! GGTGATGGAACCTGCCTTGC+AGG + chr6_3:9877884-9877903 None:intergenic 60.0%
! TGACGCGTAGACGGTGTTGG+TGG + chr6_3:9877973-9877992 None:intergenic 60.0%
! TATGGGTGGCACCGAGGCAA+TGG - chr6_3:9878222-9878241 Msa0938150:three_prime_UTR 60.0%
! TGGCACCGAGGCAATGGAGT+TGG - chr6_3:9878228-9878247 Msa0938150:three_prime_UTR 60.0%
TCAGCGTCTGACACATGCGC+AGG - chr6_3:9880345-9880364 Msa0938150:CDS 60.0%
TACCTTTGGCCGTTACGCGC+AGG - chr6_3:9880480-9880499 Msa0938150:CDS 60.0%
CTGGACACTTCCATGGCGGC+CGG - chr6_3:9877661-9877680 Msa0938150:intron 65.0%
TCCGCGTGCTCAGGTATGGG+TGG - chr6_3:9878208-9878227 Msa0938150:three_prime_UTR 65.0%
GCCACCCATACCTGAGCACG+CGG + chr6_3:9878212-9878231 None:intergenic 65.0%
CTCAGGTATGGGTGGCACCG+AGG - chr6_3:9878216-9878235 Msa0938150:three_prime_UTR 65.0%
CACCTGCGCGTAACGGCCAA+AGG + chr6_3:9880485-9880504 None:intergenic 65.0%
!! CGGCCGCCATGGAAGTGTCC+AGG + chr6_3:9877663-9877682 None:intergenic 70.0%
ACACTTCCATGGCGGCCGGC+AGG - chr6_3:9877665-9877684 Msa0938150:intron 70.0%
AAAGCTCCTGCCGGCCGCCA+TGG + chr6_3:9877674-9877693 None:intergenic 70.0%
TGGCCGTTACGCGCAGGTGC+AGG - chr6_3:9880486-9880505 Msa0938150:CDS 70.0%
GCGCCTGCACCTGCGCGTAA+CGG + chr6_3:9880492-9880511 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 9875630 9880512 9875630 ID=Msa0938150;Name=Msa0938150
chr6_3 mRNA 9875630 9880512 9875630 ID=Msa0938150-mRNA-1;Parent=Msa0938150;Name=Msa0938150-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.8|0.83|1|0.8|0.83|6|2432|100
chr6_3 exon 9875630 9876537 9875630 ID=Msa0938150-mRNA-1:exon:3116;Parent=Msa0938150-mRNA-1
chr6_3 exon 9876950 9877092 9876950 ID=Msa0938150-mRNA-1:exon:3115;Parent=Msa0938150-mRNA-1
chr6_3 exon 9877215 9877433 9877215 ID=Msa0938150-mRNA-1:exon:3114;Parent=Msa0938150-mRNA-1
chr6_3 exon 9877771 9878029 9877771 ID=Msa0938150-mRNA-1:exon:3113;Parent=Msa0938150-mRNA-1
chr6_3 exon 9878136 9879112 9878136 ID=Msa0938150-mRNA-1:exon:3112;Parent=Msa0938150-mRNA-1
chr6_3 exon 9880284 9880512 9880284 ID=Msa0938150-mRNA-1:exon:3111;Parent=Msa0938150-mRNA-1
chr6_3 CDS 9880284 9880512 9880284 ID=Msa0938150-mRNA-1:cds;Parent=Msa0938150-mRNA-1
chr6_3 CDS 9879039 9879112 9879039 ID=Msa0938150-mRNA-1:cds;Parent=Msa0938150-mRNA-1
chr6_3 three_prime_UTR 9878136 9879038 9878136 ID=Msa0938150-mRNA-1:three_prime_utr;Parent=Msa0938150-mRNA-1
chr6_3 three_prime_UTR 9877771 9878029 9877771 ID=Msa0938150-mRNA-1:three_prime_utr;Parent=Msa0938150-mRNA-1
chr6_3 three_prime_UTR 9877215 9877433 9877215 ID=Msa0938150-mRNA-1:three_prime_utr;Parent=Msa0938150-mRNA-1
chr6_3 three_prime_UTR 9876950 9877092 9876950 ID=Msa0938150-mRNA-1:three_prime_utr;Parent=Msa0938150-mRNA-1
chr6_3 three_prime_UTR 9875630 9876537 9875630 ID=Msa0938150-mRNA-1:three_prime_utr;Parent=Msa0938150-mRNA-1
Gene Sequence

>Msa0938150

ATGGTGGCAGCAATTGCTGTTTCTTCATCAAATTCCACACTTTTGAAGAACCACATCAATTTAAAACATTCAAGTTCAAATTTTGTTGGTGGTTCTTTAAAGGGTCTTTGCTTGCATGTGAAACAAAGACAACAAAGAAGAGATTCATTCAATTTGGTTGTTGCTTCTGCCACAAGTTCTTCTGGAACAACAAGTAGTGCTAATGGGAGATTTTACTTCAACTTCACTGGCCGTGAAGGGTTGTATATGGCTATTCGAACAAGAGCAGGCATTAGGCTTCAGCAGTGTTTCAACAAACATTAG

Protein sequence

>Msa0938150

MVAAIAVSSSNSTLLKNHINLKHSSSNFVGGSLKGLCLHVKQRQQRRDSFNLVVASATSSSGTTSSANGRFYFNFTGREGLYMAIRTRAGIRLQQCFNKH*