AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0473500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0473500 MtrunA17_Chr3g0129361 87.295 244 6 2 1 243 1 220 4.22e-158 437
Msa0473500 MtrunA17_Chr8g0383351 62.857 245 70 13 6 243 4 234 2.32e-88 261
Msa0473500 MtrunA17_Chr8g0335811 79.121 91 19 0 143 233 130 220 4.11e-48 158
Msa0473500 MtrunA17_Chr5g0418781 66.667 81 27 0 143 223 100 180 9.32e-34 122
Msa0473500 MtrunA17_Chr1g0194481 60.638 94 35 2 139 232 131 222 5.01e-32 119
Msa0473500 MtrunA17_Chr3g0106491 64.103 78 28 0 146 223 344 421 9.81e-31 119
Msa0473500 MtrunA17_Chr3g0106491 47.887 71 32 2 157 223 184 253 8.19e-15 73.2
Msa0473500 MtrunA17_Chr5g0432161 41.420 169 79 4 69 223 315 477 2.26e-30 118
Msa0473500 MtrunA17_Chr5g0432161 56.140 57 24 1 167 223 244 299 1.30e-14 72.8
Msa0473500 MtrunA17_Chr2g0294231 68.493 73 23 0 151 223 187 259 2.56e-30 115
Msa0473500 MtrunA17_Chr7g0248721 33.488 215 117 5 32 234 6 206 2.61e-30 112
Msa0473500 MtrunA17_Chr4g0051881 70.423 71 21 0 153 223 164 234 2.68e-30 115
Msa0473500 MtrunA17_Chr5g0445311 60.526 76 30 0 148 223 345 420 6.98e-30 116
Msa0473500 MtrunA17_Chr5g0445311 43.182 88 46 2 152 236 185 271 6.70e-14 70.5
Msa0473500 MtrunA17_Chr7g0270191 53.846 104 42 3 124 223 100 201 2.60e-29 111
Msa0473500 MtrunA17_Chr3g0079691 49.558 113 44 1 124 223 439 551 2.94e-29 115
Msa0473500 MtrunA17_Chr3g0079691 56.140 57 24 1 167 223 280 335 7.00e-15 73.6
Msa0473500 MtrunA17_Chr7g0218081 61.039 77 30 0 147 223 390 466 3.20e-29 114
Msa0473500 MtrunA17_Chr7g0218081 59.649 57 22 1 167 223 228 283 3.48e-16 77.4
Msa0473500 MtrunA17_Chr3g0101131 60.526 76 30 0 148 223 396 471 3.23e-29 115
Msa0473500 MtrunA17_Chr3g0101131 56.140 57 24 1 167 223 243 298 1.03e-14 73.2
Msa0473500 MtrunA17_Chr5g0418191 61.842 76 29 0 148 223 301 376 3.61e-29 113
Msa0473500 MtrunA17_Chr5g0418191 49.367 79 34 3 167 241 151 227 3.43e-15 74.3
Msa0473500 MtrunA17_Chr4g0004911 44.928 138 59 3 97 223 261 392 7.58e-29 113
Msa0473500 MtrunA17_Chr4g0004911 52.632 57 27 0 167 223 184 240 3.82e-15 74.3
Msa0473500 MtrunA17_Chr5g0443131 66.197 71 24 0 153 223 143 213 1.14e-28 110
Msa0473500 MtrunA17_Chr4g0068541 67.123 73 24 0 151 223 192 264 1.46e-28 111
Msa0473500 MtrunA17_Chr4g0042831 59.211 76 31 0 148 223 259 334 3.41e-28 110
Msa0473500 MtrunA17_Chr4g0042831 54.386 57 26 0 167 223 145 201 1.17e-14 72.4
Msa0473500 MtrunA17_Chr7g0224801 63.768 69 25 0 155 223 81 149 5.96e-28 104
Msa0473500 MtrunA17_Chr7g0249301 56.627 83 36 0 141 223 266 348 3.32e-27 107
Msa0473500 MtrunA17_Chr7g0249301 52.381 63 29 1 165 227 60 121 2.84e-15 74.3
Msa0473500 MtrunA17_Chr7g0249311 55.422 83 37 0 141 223 366 448 4.58e-27 108
Msa0473500 MtrunA17_Chr7g0249311 55.172 58 25 1 167 224 179 235 1.04e-15 76.3
Msa0473500 MtrunA17_Chr7g0243891 59.211 76 31 0 148 223 355 430 1.01e-26 107
Msa0473500 MtrunA17_Chr7g0243891 50.000 76 35 2 167 240 216 290 5.34e-15 73.9
Msa0473500 MtrunA17_Chr1g0150801 58.442 77 31 1 147 223 83 158 1.16e-26 101
Msa0473500 MtrunA17_Chr8g0386241 45.918 98 51 2 145 242 81 176 1.26e-25 99.0
Msa0473500 MtrunA17_Chr1g0188941 56.579 76 33 0 148 223 32 107 2.89e-25 96.3
Msa0473500 MtrunA17_Chr3g0129321 57.895 76 31 1 153 227 104 179 3.55e-25 98.6
Msa0473500 MtrunA17_Chr7g0263531 56.944 72 31 0 152 223 346 417 8.39e-24 99.0
Msa0473500 MtrunA17_Chr7g0263531 57.143 56 23 1 168 223 190 244 1.41e-14 72.4
Msa0473500 MtrunA17_Chr1g0189391 47.727 88 45 1 154 240 84 171 2.09e-22 94.0
Msa0473500 MtrunA17_Chr8g0383251 42.424 99 51 1 131 223 66 164 2.54e-22 90.5
Msa0473500 MtrunA17_Chr7g0238921 45.361 97 52 1 128 223 84 180 1.77e-21 90.9
Msa0473500 MtrunA17_Chr5g0447701 51.351 74 36 0 152 225 237 310 4.64e-21 90.9
Msa0473500 MtrunA17_Chr1g0147881 36.735 147 74 4 86 231 199 327 1.08e-20 89.4
Msa0473500 MtrunA17_Chr4g0074001 49.315 73 37 0 151 223 343 415 1.41e-19 87.4
Msa0473500 MtrunA17_Chr2g0322391 46.067 89 46 2 150 236 332 420 1.44e-19 87.4
Msa0473500 MtrunA17_Chr6g0485431 48.611 72 36 1 153 223 140 211 1.60e-19 86.3
Msa0473500 MtrunA17_Chr4g0060271 47.368 76 39 1 150 224 238 313 4.00e-19 85.9
Msa0473500 MtrunA17_Chr4g0075201 48.000 75 38 1 150 223 250 324 2.07e-18 84.0
Msa0473500 MtrunA17_Chr3g0139021 46.988 83 40 3 142 223 292 371 2.51e-18 83.2
Msa0473500 MtrunA17_Chr5g0401821 40.870 115 56 4 118 226 151 259 2.68e-18 81.6
Msa0473500 MtrunA17_Chr4g0053281 45.455 88 44 2 140 226 242 326 2.68e-18 82.4
Msa0473500 MtrunA17_Chr3g0099641 44.737 76 41 1 150 224 234 309 3.47e-18 83.2
Msa0473500 MtrunA17_Chr2g0288871 46.667 75 39 1 150 223 288 362 3.61e-18 83.2
Msa0473500 MtrunA17_Chr7g0270831 47.297 74 38 1 151 223 200 273 6.56e-18 82.0
Msa0473500 MtrunA17_Chr2g0333851 46.154 78 39 2 149 223 149 226 9.72e-18 80.9
Msa0473500 MtrunA17_Chr4g0071521 37.500 112 55 4 114 224 206 303 1.23e-16 77.8
Msa0473500 MtrunA17_Chr7g0216891 47.887 71 36 1 154 223 206 276 1.53e-16 78.6
Msa0473500 MtrunA17_Chr7g0228941 52.459 61 28 1 164 223 49 109 1.69e-16 73.6
Msa0473500 MtrunA17_Chr4g0025061 45.882 85 44 2 154 236 347 431 1.93e-16 78.2
Msa0473500 MtrunA17_Chr1g0150281 52.632 57 26 1 168 223 141 197 3.74e-16 75.9
Msa0473500 MtrunA17_Chr2g0302391 34.014 147 87 4 99 242 150 289 3.87e-16 77.0
Msa0473500 MtrunA17_Chr1g0184691 36.111 108 65 2 118 224 247 351 9.35e-16 75.5
Msa0473500 MtrunA17_Chr4g0051181 44.595 74 40 1 151 223 227 300 9.64e-16 75.9
Msa0473500 MtrunA17_Chr3g0136961 50.000 60 29 1 166 224 137 196 9.97e-16 74.7
Msa0473500 MtrunA17_Chr1g0150271 44.615 65 35 1 165 228 99 163 1.70e-15 73.6
Msa0473500 MtrunA17_Chr8g0348311 38.462 117 59 6 127 239 124 231 5.92e-15 73.2
Msa0473500 MtrunA17_Chr8g0387981 53.125 64 27 1 167 227 132 195 8.41e-15 72.8
Msa0473500 MtrunA17_Chr4g0001361 43.478 69 38 1 165 232 160 228 9.17e-15 72.4
Msa0473500 MtrunA17_Chr3g0126391 53.333 60 25 1 166 222 132 191 1.02e-14 72.4
Msa0473500 MtrunA17_Chr5g0447711 43.243 74 42 0 152 225 215 288 4.17e-14 70.5
Msa0473500 MtrunA17_Chr5g0432071 52.632 57 26 1 167 223 104 159 1.09e-13 67.8
Msa0473500 MtrunA17_Chr4g0025051 42.353 85 47 2 154 236 322 406 1.64e-13 69.7
Msa0473500 MtrunA17_Chr7g0244981 50.847 59 26 1 167 222 122 180 1.94e-13 68.2
Msa0473500 MtrunA17_Chr7g0275531 43.023 86 45 2 141 222 91 176 2.51e-13 68.2
Msa0473500 MtrunA17_Chr2g0315381 50.820 61 27 1 165 222 142 202 3.30e-13 67.8
Msa0473500 MtrunA17_Chr2g0315361 39.362 94 51 3 132 222 116 206 4.41e-13 67.4
Msa0473500 MtrunA17_Chr8g0379461 48.276 58 29 1 168 224 77 134 8.30e-13 65.9
Msa0473500 MtrunA17_Chr2g0289181 40.845 71 39 2 155 224 4 72 1.37e-12 65.1
Msa0473500 MtrunA17_Chr2g0293481 32.673 101 60 2 131 223 224 324 1.39e-12 66.6
Msa0473500 MtrunA17_Chr8g0387501 46.667 60 31 1 165 223 127 186 1.72e-12 65.5
Msa0473500 MtrunA17_Chr2g0284321 46.552 58 30 1 168 224 36 93 1.74e-12 64.7
Msa0473500 MtrunA17_Chr7g0248691 36.975 119 61 5 126 239 121 230 3.50e-12 65.1
Msa0473500 MtrunA17_Chr8g0334541 38.372 86 49 2 145 227 82 166 3.90e-12 64.7
Msa0473500 MtrunA17_Chr7g0244971 40.000 85 47 2 141 222 98 181 4.72e-12 64.3
Msa0473500 MtrunA17_Chr7g0270051 49.123 57 28 1 168 223 54 110 6.51e-12 63.5
Msa0473500 MtrunA17_Chr8g0347251 41.096 73 40 1 166 235 135 207 7.20e-12 64.3
Msa0473500 MtrunA17_Chr8g0350621 44.068 59 30 1 167 222 111 169 1.42e-11 62.8
Msa0473500 MtrunA17_Chr2g0319961 46.552 58 30 1 168 224 81 138 3.82e-11 61.6
Msa0473500 MtrunA17_Chr1g0202461 36.709 79 48 2 147 224 242 319 7.33e-11 61.2
Msa0473500 MtrunA17_Chr1g0188961 49.091 55 28 0 187 241 3 57 7.88e-11 56.6
Msa0473500 MtrunA17_Chr3g0128671 39.773 88 38 4 147 225 112 193 8.07e-11 60.8
Msa0473500 MtrunA17_Chr2g0315371 42.623 61 32 1 165 222 139 199 1.00e-10 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0473500 AT4G39410.1 76.033 121 23 2 129 243 184 304 6.04e-62 196
Msa0473500 AT2G44745.1 82.558 86 15 0 143 228 121 206 5.25e-48 158
Msa0473500 AT1G69310.4 63.218 87 31 1 137 223 118 203 1.24e-34 125
Msa0473500 AT1G69310.2 63.218 87 31 1 137 223 118 203 1.24e-34 125
Msa0473500 AT1G69310.1 63.218 87 31 1 137 223 118 203 1.24e-34 125
Msa0473500 AT5G41570.1 57.282 103 40 2 130 232 64 162 4.17e-33 119
Msa0473500 AT1G64000.1 62.222 90 33 1 143 232 90 178 1.20e-32 118
Msa0473500 AT2G46130.1 59.770 87 34 1 148 234 11 96 4.65e-32 114
Msa0473500 AT5G49520.1 68.493 73 23 0 151 223 205 277 1.06e-30 117
Msa0473500 AT5G07100.2 51.923 104 44 1 120 223 100 197 1.24e-30 113
Msa0473500 AT5G07100.2 47.826 69 36 0 155 223 12 80 9.64e-15 71.2
Msa0473500 AT5G07100.4 51.923 104 44 1 120 223 100 197 1.24e-30 113
Msa0473500 AT5G07100.4 47.826 69 36 0 155 223 12 80 9.64e-15 71.2
Msa0473500 AT5G07100.5 51.923 104 44 1 120 223 100 197 1.24e-30 113
Msa0473500 AT5G07100.5 47.826 69 36 0 155 223 12 80 9.64e-15 71.2
Msa0473500 AT5G07100.3 51.923 104 44 1 120 223 100 197 1.24e-30 113
Msa0473500 AT5G07100.3 47.826 69 36 0 155 223 12 80 9.64e-15 71.2
Msa0473500 AT4G18170.1 59.375 96 37 2 133 227 139 233 1.57e-30 115
Msa0473500 AT5G07100.1 51.923 104 44 1 120 223 193 290 2.18e-30 115
Msa0473500 AT5G07100.1 47.826 69 36 0 155 223 105 173 1.07e-14 72.4
Msa0473500 AT5G26170.1 66.216 74 25 0 154 227 100 173 2.43e-30 111
Msa0473500 AT4G26640.5 53.846 91 35 1 140 223 171 261 2.26e-29 114
Msa0473500 AT4G26640.5 54.237 59 26 1 165 223 33 90 7.01e-14 70.5
Msa0473500 AT4G26640.6 53.846 91 35 1 140 223 171 261 2.26e-29 114
Msa0473500 AT4G26640.6 54.237 59 26 1 165 223 33 90 7.01e-14 70.5
Msa0473500 AT4G26640.4 53.846 91 35 1 140 223 171 261 2.26e-29 114
Msa0473500 AT4G26640.4 54.237 59 26 1 165 223 33 90 7.01e-14 70.5
Msa0473500 AT4G26640.3 53.846 91 35 1 140 223 171 261 2.26e-29 114
Msa0473500 AT4G26640.3 54.237 59 26 1 165 223 33 90 7.01e-14 70.5
Msa0473500 AT1G13960.2 63.158 76 28 0 148 223 237 312 2.44e-29 113
Msa0473500 AT1G13960.2 55.932 59 25 1 167 225 76 133 9.04e-15 73.2
Msa0473500 AT4G26640.7 53.846 91 35 1 140 223 307 397 2.70e-29 115
Msa0473500 AT4G26640.7 54.237 59 26 1 165 223 169 226 3.91e-14 71.6
Msa0473500 AT1G13960.1 63.158 76 28 0 148 223 390 465 2.78e-29 115
Msa0473500 AT1G13960.1 55.932 59 25 1 167 225 229 286 2.98e-15 75.1
Msa0473500 AT2G03340.1 63.158 76 28 0 148 223 396 471 3.14e-29 115
Msa0473500 AT2G03340.1 56.140 57 24 1 167 223 250 305 6.54e-14 71.2
Msa0473500 AT4G26640.1 53.846 91 35 1 140 223 275 365 3.66e-29 114
Msa0473500 AT4G26640.1 54.237 59 26 1 165 223 137 194 5.41e-14 71.2
Msa0473500 AT4G26640.2 53.846 91 35 1 140 223 347 437 4.72e-29 114
Msa0473500 AT4G26640.2 54.237 59 26 1 165 223 209 266 4.75e-14 71.6
Msa0473500 AT1G29860.1 65.753 73 25 0 151 223 120 192 4.98e-29 110
Msa0473500 AT1G69310.3 58.621 87 31 2 137 223 118 199 5.70e-29 110
Msa0473500 AT2G47260.1 61.176 85 32 1 139 223 147 230 6.73e-29 111
Msa0473500 AT3G01080.2 55.435 92 37 1 136 223 309 400 7.43e-29 113
Msa0473500 AT3G01080.2 56.140 57 24 1 167 223 205 260 3.26e-15 74.7
Msa0473500 AT5G56270.1 63.158 76 28 0 148 223 468 543 9.18e-29 114
Msa0473500 AT5G56270.1 50.769 65 31 1 159 223 265 328 1.81e-15 75.9
Msa0473500 AT5G13080.1 64.286 70 25 0 154 223 54 123 1.14e-28 106
Msa0473500 AT3G01080.1 55.435 92 37 1 136 223 271 362 1.21e-28 112
Msa0473500 AT3G01080.1 56.140 57 24 1 167 223 167 222 5.97e-15 73.9
Msa0473500 AT2G38470.1 63.158 76 28 0 148 223 343 418 1.49e-28 113
Msa0473500 AT2G38470.1 54.386 57 25 1 167 223 184 239 1.59e-13 70.1
Msa0473500 AT2G30250.1 58.824 85 35 0 148 232 309 393 5.01e-28 110
Msa0473500 AT2G30250.1 47.222 72 36 2 167 238 166 235 2.00e-12 66.6
Msa0473500 AT5G46350.1 64.789 71 25 0 153 223 169 239 2.93e-27 107
Msa0473500 AT4G26440.1 59.211 76 31 0 148 223 353 428 6.28e-27 108
Msa0473500 AT4G26440.1 30.698 215 97 7 21 224 61 234 1.17e-16 79.3
Msa0473500 AT3G01970.1 53.409 88 38 1 154 238 52 139 7.84e-27 101
Msa0473500 AT2G46130.2 55.172 87 34 2 148 234 11 92 1.56e-26 99.4
Msa0473500 AT3G62340.1 59.036 83 32 1 141 223 94 174 6.58e-25 100
Msa0473500 AT5G64810.1 58.571 70 29 0 154 223 97 166 6.97e-25 97.8
Msa0473500 AT2G37260.2 62.903 62 23 0 162 223 262 323 4.65e-23 96.3
Msa0473500 AT2G37260.2 49.333 75 36 2 168 241 84 157 1.04e-13 70.1
Msa0473500 AT2G37260.3 62.903 62 23 0 162 223 264 325 4.72e-23 96.3
Msa0473500 AT2G37260.3 49.333 75 36 2 168 241 86 159 9.98e-14 70.1
Msa0473500 AT2G37260.1 65.000 60 21 0 164 223 346 405 8.42e-23 96.3
Msa0473500 AT2G37260.1 49.333 75 36 2 168 241 166 239 9.08e-14 70.5
Msa0473500 AT5G15130.2 40.800 125 51 4 105 224 137 243 1.35e-21 93.6
Msa0473500 AT5G15130.1 40.800 125 51 4 105 224 179 285 1.44e-21 93.6
Msa0473500 AT2G04880.2 51.316 76 37 0 148 223 264 339 1.51e-21 93.2
Msa0473500 AT2G04880.2 55.932 59 25 1 165 223 109 166 2.59e-14 72.0
Msa0473500 AT2G04880.1 51.316 76 37 0 148 223 288 363 1.95e-21 92.8
Msa0473500 AT2G04880.1 55.932 59 25 1 165 223 109 166 2.81e-14 72.0
Msa0473500 AT1G55600.1 50.000 80 40 0 144 223 284 363 4.01e-21 92.0
Msa0473500 AT2G21900.1 46.667 90 42 3 143 226 80 169 2.17e-20 86.3
Msa0473500 AT2G23320.1 51.136 88 39 3 140 226 216 300 3.98e-19 85.1
Msa0473500 AT4G31550.1 40.952 105 57 3 140 243 222 322 1.14e-18 84.0
Msa0473500 AT4G31550.2 40.952 105 57 3 140 243 221 321 1.21e-18 83.6
Msa0473500 AT4G30935.1 50.000 70 35 0 154 223 318 387 1.43e-18 84.7
Msa0473500 AT4G04450.2 49.333 75 37 1 150 223 181 255 2.43e-18 84.0
Msa0473500 AT4G04450.1 49.333 75 37 1 150 223 275 349 6.45e-18 82.8
Msa0473500 AT5G43290.1 50.704 71 34 1 154 223 100 170 1.15e-17 80.5
Msa0473500 AT1G62300.1 48.000 75 38 1 150 223 295 369 1.44e-17 82.0
Msa0473500 AT4G22070.4 48.000 75 38 1 150 223 280 354 1.78e-17 81.6
Msa0473500 AT4G22070.3 48.000 75 38 1 150 223 280 354 1.78e-17 81.6
Msa0473500 AT4G22070.2 48.000 75 38 1 150 223 280 354 1.78e-17 81.6
Msa0473500 AT4G22070.1 48.000 75 38 1 150 223 280 354 1.78e-17 81.6
Msa0473500 AT2G25000.2 51.667 60 28 1 166 224 102 161 2.15e-17 78.6
Msa0473500 AT2G25000.4 51.667 60 28 1 166 224 102 161 2.15e-17 78.6
Msa0473500 AT2G25000.3 50.820 61 29 1 165 224 123 183 3.43e-17 78.6
Msa0473500 AT4G31800.2 51.667 60 28 1 165 223 109 168 4.44e-17 78.2
Msa0473500 AT4G01720.1 48.649 74 37 1 151 223 223 296 4.66e-17 80.1
Msa0473500 AT2G25000.1 51.667 60 28 1 166 224 145 204 5.11e-17 78.6
Msa0473500 AT5G28650.1 43.023 86 45 2 140 224 238 320 5.39e-17 79.3
Msa0473500 AT2G30590.1 44.706 85 43 2 140 223 289 370 6.05e-17 79.3
Msa0473500 AT4G31800.1 51.667 60 28 1 165 223 174 233 7.33e-17 78.6
Msa0473500 AT2G24570.1 38.938 113 56 3 112 223 200 300 1.10e-16 78.2
Msa0473500 AT1G18860.1 44.000 75 41 1 150 223 222 296 2.32e-16 78.2
Msa0473500 AT3G04670.1 36.842 114 59 3 121 224 210 320 3.08e-16 77.0
Msa0473500 AT4G24240.1 41.860 86 46 2 140 224 257 339 8.08e-16 76.3
Msa0473500 AT3G01080.3 56.140 57 24 1 167 223 205 260 8.96e-16 75.9
Msa0473500 AT1G68150.1 39.806 103 54 3 126 223 193 292 1.03e-15 75.9
Msa0473500 AT1G80840.1 44.828 87 43 4 142 223 117 203 2.39e-15 74.3
Msa0473500 AT4G01250.1 42.308 78 42 2 147 223 110 185 1.35e-14 72.0
Msa0473500 AT1G69810.2 43.421 76 41 2 150 223 128 203 5.62e-14 70.5
Msa0473500 AT1G69810.1 43.421 76 41 2 150 223 186 261 6.62e-14 70.9
Msa0473500 AT1G29280.1 38.202 89 44 2 136 223 53 131 1.04e-13 68.9
Msa0473500 AT1G66550.1 40.698 86 46 2 142 222 81 166 2.07e-13 68.2
Msa0473500 AT1G66550.2 47.458 59 28 1 167 222 103 161 2.22e-13 68.2
Msa0473500 AT3G56400.1 33.654 104 65 2 135 234 87 190 2.85e-13 68.2
Msa0473500 AT1G66560.1 47.458 59 28 1 167 222 103 161 3.94e-13 67.4
Msa0473500 AT2G34830.1 38.202 89 52 3 138 223 184 272 7.84e-13 67.8
Msa0473500 AT2G34830.2 38.202 89 52 3 138 223 193 281 9.51e-13 67.4
Msa0473500 AT1G66600.1 40.506 79 43 2 166 241 102 179 1.06e-12 65.9
Msa0473500 AT1G30650.1 33.333 99 58 2 133 223 176 274 1.77e-12 66.6
Msa0473500 AT2G40740.1 50.000 58 26 1 167 221 173 230 2.72e-12 65.5
Msa0473500 AT5G01900.1 45.312 64 32 2 161 221 104 167 2.76e-12 65.1
Msa0473500 AT5G52830.1 49.123 57 28 1 168 223 166 222 2.89e-12 65.9
Msa0473500 AT4G23550.1 44.262 61 33 1 164 223 137 197 3.01e-12 65.5
Msa0473500 AT2G40740.3 50.000 58 26 1 167 221 182 239 3.38e-12 65.5
Msa0473500 AT4G12020.3 43.478 69 38 1 166 234 467 534 3.42e-12 66.2
Msa0473500 AT4G12020.3 70.000 40 12 0 148 187 622 661 7.35e-12 65.5
Msa0473500 AT4G12020.10 43.478 69 38 1 166 234 467 534 3.45e-12 66.2
Msa0473500 AT4G12020.10 70.000 40 12 0 148 187 622 661 7.62e-12 65.5
Msa0473500 AT4G12020.2 43.478 69 38 1 166 234 467 534 3.55e-12 66.2
Msa0473500 AT4G12020.2 70.000 40 12 0 148 187 622 661 7.70e-12 65.5
Msa0473500 AT4G12020.4 43.478 69 38 1 166 234 467 534 3.62e-12 66.2
Msa0473500 AT4G12020.4 70.000 40 12 0 148 187 622 661 7.99e-12 65.1
Msa0473500 AT4G12020.5 43.478 69 38 1 166 234 400 467 3.67e-12 66.2
Msa0473500 AT4G12020.5 70.000 40 12 0 148 187 555 594 8.35e-12 65.1
Msa0473500 AT4G12020.6 43.478 69 38 1 166 234 467 534 3.70e-12 66.2
Msa0473500 AT4G12020.6 70.000 40 12 0 148 187 622 661 7.65e-12 65.5
Msa0473500 AT4G12020.8 43.478 69 38 1 166 234 467 534 3.70e-12 66.2
Msa0473500 AT4G12020.8 70.000 40 12 0 148 187 622 661 7.65e-12 65.5
Msa0473500 AT4G12020.1 43.478 69 38 1 166 234 467 534 3.81e-12 66.2
Msa0473500 AT4G12020.1 70.000 40 12 0 148 187 622 661 7.74e-12 65.5
Msa0473500 AT4G12020.9 43.478 69 38 1 166 234 467 534 3.81e-12 66.2
Msa0473500 AT4G12020.9 70.000 40 12 0 148 187 622 661 7.74e-12 65.5
Msa0473500 AT4G12020.7 43.478 69 38 1 166 234 467 534 3.88e-12 66.2
Msa0473500 AT4G12020.7 70.000 40 12 0 148 187 622 661 8.03e-12 65.1
Msa0473500 AT4G12020.11 43.478 69 38 1 166 234 467 534 5.61e-12 65.5
Msa0473500 AT4G12020.11 70.000 40 12 0 148 187 622 661 1.03e-11 64.7
Msa0473500 AT5G45050.4 34.737 95 61 1 130 223 1004 1098 7.33e-12 65.5
Msa0473500 AT5G45050.1 34.737 95 61 1 130 223 1143 1237 8.48e-12 65.1
Msa0473500 AT5G45050.2 34.737 95 61 1 130 223 1115 1209 8.78e-12 65.1
Msa0473500 AT1G80590.1 46.552 58 28 1 168 222 86 143 1.73e-11 62.4
Msa0473500 AT5G22570.1 46.552 58 28 1 168 222 111 168 2.74e-11 62.4
Msa0473500 AT5G24110.1 39.759 83 38 2 165 235 111 193 3.91e-11 62.4
Msa0473500 AT2G40750.1 34.188 117 69 2 120 228 100 216 4.31e-11 62.4

Find 86 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATTATCTATACCTATTCT+AGG 0.247192 3_3:+76130092 Msa0473500:three_prime_UTR
AATTAGTGAAAAGTTGAAAA+TGG 0.254141 3_3:-76130170 None:intergenic
GATCATCTTACTTCTAGTTT+TGG 0.279525 3_3:+76128012 Msa0473500:CDS
GGTACCACTTCTCCAACTTT+AGG 0.294988 3_3:+76127648 Msa0473500:five_prime_UTR
TCAGCAAAATTTGCAGCTTC+AGG 0.298513 3_3:-76127946 None:intergenic
ACTAGCTAGCTACAAGTTAA+TGG 0.299451 3_3:+76127562 Msa0473500:five_prime_UTR
TATGTGGTTATCACCATTCT+TGG 0.301275 3_3:-76129862 None:intergenic
GATTCTTCAAGTTCATTTGA+TGG 0.326616 3_3:-76129907 None:intergenic
AAACATGACCTTACCTCCTT+TGG 0.332541 3_3:+76127864 Msa0473500:CDS
CTGAACTTACTAATTTCTTC+TGG 0.337305 3_3:+76129941 Msa0473500:CDS
ACAGATCCAAAGTGAATTCA+TGG 0.376673 3_3:+76128061 Msa0473500:CDS
CTTTGGATCTGTTCAAAGAA+AGG 0.382028 3_3:-76128050 None:intergenic
ACCAACATATATTTCTCTCT+TGG 0.391421 3_3:+76129983 Msa0473500:three_prime_UTR
GGTTGTAGATCTAGAGAGTT+GGG 0.396794 3_3:+76127669 Msa0473500:five_prime_UTR
GTTGGGTAGAGATTATAGAT+TGG 0.397834 3_3:+76127686 Msa0473500:five_prime_UTR
AATGGGAGGAGCAGATAGAA+AGG 0.414527 3_3:-76130152 None:intergenic
ATTAGTGAAAAGTTGAAAAT+GGG 0.419690 3_3:-76130169 None:intergenic
AAAAGGCAAAGCAATGGAAA+AGG 0.419693 3_3:+76127509 None:intergenic
AAAGGAGGTAAGGTCATGTT+TGG 0.420084 3_3:-76127862 None:intergenic
TCATGAGATCCCTATGCAAA+TGG 0.425861 3_3:+76127819 Msa0473500:CDS
CCATAGCTTGTTTGATCAAG+AGG 0.452922 3_3:+76127792 Msa0473500:CDS
TTCTGAAAAGAAAACTCTAT+AGG 0.453642 3_3:+76127627 Msa0473500:five_prime_UTR
AACATATATTTCTCTCTTGG+AGG 0.453995 3_3:+76129986 Msa0473500:three_prime_UTR
TATGATTGAATTTAGGGCAT+GGG 0.455045 3_3:+76128469 Msa0473500:intron
TACCTTTCAAAGATTGATGA+TGG 0.466958 3_3:-76127894 None:intergenic
TGAAGAAAATGAAGGGAAGA+AGG 0.467112 3_3:+76128588 Msa0473500:CDS
CATCATCAAAATCAACAACT+AGG 0.470537 3_3:+76128548 Msa0473500:CDS
CATGAGATCCCTATGCAAAT+GGG 0.477999 3_3:+76127820 Msa0473500:CDS
ATCTCACCATGAATTCACTT+TGG 0.483028 3_3:-76128067 None:intergenic
ATCATCAAAATCAACAACTA+GGG 0.483451 3_3:+76128549 Msa0473500:CDS
GAAGGAAGGTGAGGGAGCCT+AGG 0.492345 3_3:+76128606 Msa0473500:CDS
CTAGATCTACAACCTAAAGT+TGG 0.495671 3_3:-76127660 None:intergenic
AAAGGCAAAGCAATGGAAAA+GGG 0.497716 3_3:+76127510 None:intergenic
TATGCATGATTTCCTAGAAT+AGG 0.499233 3_3:-76130104 None:intergenic
AGAAGTAACTGATAGCTTGA+TGG 0.501267 3_3:+76128493 Msa0473500:CDS
AAGGTCATGTTTGGAGGGAA+AGG 0.503288 3_3:-76127853 None:intergenic
ACGTGTGGAGCGGTTGGCTG+AGG 0.504103 3_3:+76129837 Msa0473500:CDS
TTGAACAGCTGTTGCAAGGA+GGG 0.504686 3_3:-76127971 None:intergenic
AGCAATGGAAAAGGGAAAGT+TGG 0.504789 3_3:+76127518 None:intergenic
ATTAAGACTGAATAATTAAG+TGG 0.508809 3_3:+76130032 Msa0473500:three_prime_UTR
TGAAGGGAAGAAGGAAGGTG+AGG 0.508932 3_3:+76128597 Msa0473500:CDS
ATCTGTTCAAAGAAAGGAGT+TGG 0.513213 3_3:-76128044 None:intergenic
CCTCTTGATCAAACAAGCTA+TGG 0.514036 3_3:-76127792 None:intergenic
AATAAAGATGAAGAAAATGA+AGG 0.519125 3_3:+76128580 Msa0473500:CDS
GAAGTAACTGATAGCTTGAT+GGG 0.521967 3_3:+76128494 Msa0473500:CDS
AGCATGTCTTCCTTCATATG+TGG 0.525478 3_3:-76129878 None:intergenic
GCAATTATCCAAAGGAGGTA+AGG 0.525699 3_3:-76127872 None:intergenic
GAAAATGAAGGGAAGAAGGA+AGG 0.526149 3_3:+76128592 Msa0473500:CDS
ATGATTGAATTTAGGGCATG+GGG 0.530214 3_3:+76128470 Msa0473500:intron
GAAGGGAAGAAGGAAGGTGA+GGG 0.532669 3_3:+76128598 Msa0473500:CDS
AGGTTGTAGATCTAGAGAGT+TGG 0.538572 3_3:+76127668 Msa0473500:five_prime_UTR
TCTCCTTCTCTATATAACCT+TGG 0.538852 3_3:-76127713 None:intergenic
GGAGGTAAGGTCATGTTTGG+AGG 0.539020 3_3:-76127859 None:intergenic
GGTTACAAGTGGAGGAAGTA+CGG 0.540793 3_3:+76128671 Msa0473500:CDS
GACTGAATAATTAAGTGGTG+TGG 0.542090 3_3:+76130037 Msa0473500:three_prime_UTR
TGCCATCATCAATCTTTGAA+AGG 0.544773 3_3:+76127892 Msa0473500:CDS
TATTGAACCCCATTTGCATA+GGG 0.544992 3_3:-76127828 None:intergenic
ATATTGAACCCCATTTGCAT+AGG 0.547777 3_3:-76127829 None:intergenic
ATAAAGATGAAGAAAATGAA+GGG 0.547814 3_3:+76128581 Msa0473500:CDS
ATGGTGATAACCACATATGA+AGG 0.551016 3_3:+76129868 Msa0473500:CDS
AAAGAAACGTGTGGAGCGGT+TGG 0.558270 3_3:+76129831 Msa0473500:CDS
GATTATAGATTGGATTGCCA+AGG 0.559310 3_3:+76127696 Msa0473500:five_prime_UTR
GCTTCAGGAGAAAGTGATGA+AGG 0.566189 3_3:-76127931 None:intergenic
GACGTGGATGTGTTGGATGA+TGG 0.572793 3_3:+76128650 Msa0473500:CDS
GAGGTAAGGTCATGTTTGGA+GGG 0.578786 3_3:-76127858 None:intergenic
GAGGAAGTACGGACAGAAAG+TGG 0.580020 3_3:+76128682 Msa0473500:CDS
TCCAAGAGAGAAATATATGT+TGG 0.580358 3_3:-76129984 None:intergenic
TATGAGCGACGTGGATGTGT+TGG 0.583583 3_3:+76128643 Msa0473500:CDS
ACAACCTAAAGTTGGAGAAG+TGG 0.587621 3_3:-76127652 None:intergenic
GTTGGCTGAGGATCCAAGAA+TGG 0.588263 3_3:+76129849 Msa0473500:CDS
TAAAGAACACACAGCATCCA+AGG 0.591239 3_3:+76128705 Msa0473500:CDS
TTGCCAAGGTTATATAGAGA+AGG 0.592512 3_3:+76127710 Msa0473500:five_prime_UTR
AGATGATCTTCAAATTCTCG+TGG 0.612771 3_3:-76127997 None:intergenic
AGTGAAAAGTTGAAAATGGG+AGG 0.612976 3_3:-76130166 None:intergenic
GACAATTATCTTGTGTGCAA+CGG 0.619219 3_3:-76129804 None:intergenic
TGGATGATGGTTACAAGTGG+AGG 0.635586 3_3:+76128663 Msa0473500:CDS
ATGAGATCCCTATGCAAATG+GGG 0.638441 3_3:+76127821 Msa0473500:CDS
TGATGATGGCAATTATCCAA+AGG 0.643521 3_3:-76127880 None:intergenic
TCATCAAAATCAACAACTAG+GGG 0.646236 3_3:+76128550 Msa0473500:CDS
ATAGTCTTGAAGCAAAACCT+AGG 0.654328 3_3:-76128623 None:intergenic
TTGTCGAGTAAAGAAACGTG+TGG 0.654452 3_3:+76129822 Msa0473500:CDS
CTTCAAGACTATGAGCGACG+TGG 0.655053 3_3:+76128634 Msa0473500:CDS
TGTTGGATGATGGTTACAAG+TGG 0.666245 3_3:+76128660 Msa0473500:CDS
TTTGAACAGCTGTTGCAAGG+AGG 0.670990 3_3:-76127972 None:intergenic
TGATGGCAATTATCCAAAGG+AGG 0.672690 3_3:-76127877 None:intergenic
GAGTAAAGAAACGTGTGGAG+CGG 0.683085 3_3:+76129827 Msa0473500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTGCTTATATTTTTTTA+AGG + chr3_3:76128378-76128397 Msa0473500:intron 10.0%
!!! ATTTGCTTATATTTTTTTAA+GGG + chr3_3:76128379-76128398 Msa0473500:intron 10.0%
!!! AAAATAAATCTTAACATTTT+GGG - chr3_3:76129184-76129203 None:intergenic 10.0%
!!! TAAAATAAATCTTAACATTT+TGG - chr3_3:76129185-76129204 None:intergenic 10.0%
!! ATTTACCTATCAAAAAATAT+AGG + chr3_3:76128341-76128360 Msa0473500:intron 15.0%
!!! CATTATTGTTTTTTTTTTAG+AGG - chr3_3:76130266-76130285 None:intergenic 15.0%
!! GTGGAATATTTGAAAATTTA+AGG - chr3_3:76128100-76128119 None:intergenic 20.0%
!! ATTAAATATAGATACTAGTC+TGG + chr3_3:76128151-76128170 Msa0473500:intron 20.0%
!!! ATTTGCCTATATTTTTTGAT+AGG - chr3_3:76128349-76128368 None:intergenic 20.0%
!! AATAAAGATGAAGAAAATGA+AGG + chr3_3:76128580-76128599 Msa0473500:CDS 20.0%
!! ATAAAGATGAAGAAAATGAA+GGG + chr3_3:76128581-76128600 Msa0473500:CDS 20.0%
!! TTCTAATAAACAATAATGAG+AGG - chr3_3:76128806-76128825 None:intergenic 20.0%
!!! TATTTGCCTTATGATTATTT+TGG + chr3_3:76128831-76128850 Msa0473500:intron 20.0%
!! GGTTATACTATAACATATAT+AGG - chr3_3:76129041-76129060 None:intergenic 20.0%
!! CAAGCAAAATTGTATATAAA+AGG - chr3_3:76129127-76129146 None:intergenic 20.0%
!!! TATAGTACTATTTTCCTTTT+TGG - chr3_3:76129731-76129750 None:intergenic 20.0%
!! ATTAAGACTGAATAATTAAG+TGG + chr3_3:76130032-76130051 Msa0473500:three_prime_UTR 20.0%
!! ATATTATCTATACCTATTCT+AGG + chr3_3:76130092-76130111 Msa0473500:three_prime_UTR 20.0%
!! ATTAGTGAAAAGTTGAAAAT+GGG - chr3_3:76130172-76130191 None:intergenic 20.0%
!! AATTAGTGAAAAGTTGAAAA+TGG - chr3_3:76130173-76130192 None:intergenic 20.0%
!! TTCTGAAAAGAAAACTCTAT+AGG + chr3_3:76127627-76127646 Msa0473500:five_prime_UTR 25.0%
! AAACTTAACTCTCTTTACAA+AGG - chr3_3:76128439-76128458 None:intergenic 25.0%
! GTTGGATATGATTGAATTTA+GGG + chr3_3:76128463-76128482 Msa0473500:intron 25.0%
! ATCATCAAAATCAACAACTA+GGG + chr3_3:76128549-76128568 Msa0473500:CDS 25.0%
! AAAAGAGAGAAAATTTGAAG+TGG - chr3_3:76128746-76128765 None:intergenic 25.0%
! TAATAAACAATAATGAGAGG+AGG - chr3_3:76128803-76128822 None:intergenic 25.0%
! TAAGCACCAAAATAATCATA+AGG - chr3_3:76128840-76128859 None:intergenic 25.0%
! ATACTATAACATATATAGGC+TGG - chr3_3:76129037-76129056 None:intergenic 25.0%
! TATATATTGAATGAGTGCAA+AGG - chr3_3:76129082-76129101 None:intergenic 25.0%
!! TGATAAGTTTTCATTTGAGT+GGG - chr3_3:76129327-76129346 None:intergenic 25.0%
!! TTGATAAGTTTTCATTTGAG+TGG - chr3_3:76129328-76129347 None:intergenic 25.0%
! AAGTAAAAACCATCATTACT+AGG - chr3_3:76129605-76129624 None:intergenic 25.0%
! GTACAGCATAAATAAAAAAC+AGG - chr3_3:76129630-76129649 None:intergenic 25.0%
! GTATTAAGGACAAAGAAAAT+GGG - chr3_3:76129665-76129684 None:intergenic 25.0%
!!! TACTATATAGGAAGGTATTA+AGG - chr3_3:76129679-76129698 None:intergenic 25.0%
! TGTAATCCAAGTTACTATAT+AGG - chr3_3:76129691-76129710 None:intergenic 25.0%
!!! TTTACTTTTAGAACAAGTCT+TGG + chr3_3:76130214-76130233 Msa0473500:three_prime_UTR 25.0%
!!! TTGTTTTTGAACTTTGGTTG+AGG - chr3_3:76127593-76127612 None:intergenic 30.0%
!!! GAGAGTTTGTTTTTGAACTT+TGG - chr3_3:76127599-76127618 None:intergenic 30.0%
TACCTTTCAAAGATTGATGA+TGG - chr3_3:76127897-76127916 None:intergenic 30.0%
!!! GATCATCTTACTTCTAGTTT+TGG + chr3_3:76128012-76128031 Msa0473500:CDS 30.0%
GTTTGTGATTAATATGCAAG+TGG - chr3_3:76128320-76128339 None:intergenic 30.0%
! GTAAAGAGAGTTAAGTTTTG+TGG + chr3_3:76128441-76128460 Msa0473500:intron 30.0%
GGTTGGATATGATTGAATTT+AGG + chr3_3:76128462-76128481 Msa0473500:intron 30.0%
! ATATGATTGAATTTAGGGCA+TGG + chr3_3:76128468-76128487 Msa0473500:intron 30.0%
! TATGATTGAATTTAGGGCAT+GGG + chr3_3:76128469-76128488 Msa0473500:intron 30.0%
CATCATCAAAATCAACAACT+AGG + chr3_3:76128548-76128567 Msa0473500:CDS 30.0%
TCATCAAAATCAACAACTAG+GGG + chr3_3:76128550-76128569 Msa0473500:CDS 30.0%
!!! TGATTATTTTGGTGCTTAAG+AGG + chr3_3:76128842-76128861 Msa0473500:intron 30.0%
!!! GATTATTTTGGTGCTTAAGA+GGG + chr3_3:76128843-76128862 Msa0473500:intron 30.0%
AGATTTCACTTTATGTCTTC+TGG + chr3_3:76128899-76128918 Msa0473500:intron 30.0%
GATTTCACTTTATGTCTTCT+GGG + chr3_3:76128900-76128919 Msa0473500:intron 30.0%
! AGAGTCCTAATTTTCAACAT+CGG - chr3_3:76128942-76128961 None:intergenic 30.0%
TATGCGTAATGTTGAAAGTT+AGG + chr3_3:76128973-76128992 Msa0473500:intron 30.0%
!! AGTAAGAAGTGTCATATTGT+TGG - chr3_3:76129423-76129442 None:intergenic 30.0%
AACATTTGCTTGAATTTGTG+TGG + chr3_3:76129462-76129481 Msa0473500:intron 30.0%
ACATTTGCTTGAATTTGTGT+GGG + chr3_3:76129463-76129482 Msa0473500:intron 30.0%
GGTATTAAGGACAAAGAAAA+TGG - chr3_3:76129666-76129685 None:intergenic 30.0%
TACCTTCCTATATAGTAACT+TGG + chr3_3:76129682-76129701 Msa0473500:intron 30.0%
ATCCAAGTTACTATATAGGA+AGG - chr3_3:76129687-76129706 None:intergenic 30.0%
TATGTACTTTAGCACCAAAA+AGG + chr3_3:76129714-76129733 Msa0473500:intron 30.0%
! GATTCTTCAAGTTCATTTGA+TGG - chr3_3:76129910-76129929 None:intergenic 30.0%
CTGAACTTACTAATTTCTTC+TGG + chr3_3:76129941-76129960 Msa0473500:CDS 30.0%
ACCAACATATATTTCTCTCT+TGG + chr3_3:76129983-76130002 Msa0473500:three_prime_UTR 30.0%
TCCAAGAGAGAAATATATGT+TGG - chr3_3:76129987-76130006 None:intergenic 30.0%
AACATATATTTCTCTCTTGG+AGG + chr3_3:76129986-76130005 Msa0473500:three_prime_UTR 30.0%
TATGCATGATTTCCTAGAAT+AGG - chr3_3:76130107-76130126 None:intergenic 30.0%
ACTAGCTAGCTACAAGTTAA+TGG + chr3_3:76127562-76127581 Msa0473500:five_prime_UTR 35.0%
CTAGATCTACAACCTAAAGT+TGG - chr3_3:76127663-76127682 None:intergenic 35.0%
GTTGGGTAGAGATTATAGAT+TGG + chr3_3:76127686-76127705 Msa0473500:five_prime_UTR 35.0%
GATTATAGATTGGATTGCCA+AGG + chr3_3:76127696-76127715 Msa0473500:five_prime_UTR 35.0%
TTGCCAAGGTTATATAGAGA+AGG + chr3_3:76127710-76127729 Msa0473500:five_prime_UTR 35.0%
TCTCCTTCTCTATATAACCT+TGG - chr3_3:76127716-76127735 None:intergenic 35.0%
TATTGAACCCCATTTGCATA+GGG - chr3_3:76127831-76127850 None:intergenic 35.0%
ATATTGAACCCCATTTGCAT+AGG - chr3_3:76127832-76127851 None:intergenic 35.0%
!! TGATGATGGCAATTATCCAA+AGG - chr3_3:76127883-76127902 None:intergenic 35.0%
TGCCATCATCAATCTTTGAA+AGG + chr3_3:76127892-76127911 Msa0473500:CDS 35.0%
AGATGATCTTCAAATTCTCG+TGG - chr3_3:76128000-76128019 None:intergenic 35.0%
!!! CATCTTACTTCTAGTTTTGG+AGG + chr3_3:76128015-76128034 Msa0473500:CDS 35.0%
ATCTGTTCAAAGAAAGGAGT+TGG - chr3_3:76128047-76128066 None:intergenic 35.0%
CTTTGGATCTGTTCAAAGAA+AGG - chr3_3:76128053-76128072 None:intergenic 35.0%
ACAGATCCAAAGTGAATTCA+TGG + chr3_3:76128061-76128080 Msa0473500:CDS 35.0%
ATCTCACCATGAATTCACTT+TGG - chr3_3:76128070-76128089 None:intergenic 35.0%
!! AGAGAGTTAAGTTTTGTGGT+TGG + chr3_3:76128445-76128464 Msa0473500:intron 35.0%
! ATGATTGAATTTAGGGCATG+GGG + chr3_3:76128470-76128489 Msa0473500:intron 35.0%
AGAAGTAACTGATAGCTTGA+TGG + chr3_3:76128493-76128512 Msa0473500:CDS 35.0%
GAAGTAACTGATAGCTTGAT+GGG + chr3_3:76128494-76128513 Msa0473500:CDS 35.0%
TTGATGGGAAAAAGAAGTAG+TGG + chr3_3:76128509-76128528 Msa0473500:CDS 35.0%
TGAAGAAAATGAAGGGAAGA+AGG + chr3_3:76128588-76128607 Msa0473500:CDS 35.0%
! ATAGTCTTGAAGCAAAACCT+AGG - chr3_3:76128626-76128645 None:intergenic 35.0%
GGAGATAATGAATACTACCT+TGG - chr3_3:76128725-76128744 None:intergenic 35.0%
GACAACACTGATAATCATTG+AGG + chr3_3:76128865-76128884 Msa0473500:intron 35.0%
GTTTGCCGATGTTGAAAATT+AGG + chr3_3:76128934-76128953 Msa0473500:intron 35.0%
! TTTGCACGACATGTATTTTG+TGG + chr3_3:76129239-76129258 Msa0473500:intron 35.0%
! TTGCACGACATGTATTTTGT+GGG + chr3_3:76129240-76129259 Msa0473500:intron 35.0%
! ATGTATTTTGTGGGTCATGA+GGG + chr3_3:76129249-76129268 Msa0473500:intron 35.0%
ACCATCATTACTAGGAGAAA+GGG - chr3_3:76129597-76129616 None:intergenic 35.0%
AACCATCATTACTAGGAGAA+AGG - chr3_3:76129598-76129617 None:intergenic 35.0%
GACAATTATCTTGTGTGCAA+CGG - chr3_3:76129807-76129826 None:intergenic 35.0%
TATGTGGTTATCACCATTCT+TGG - chr3_3:76129865-76129884 None:intergenic 35.0%
ATGGTGATAACCACATATGA+AGG + chr3_3:76129868-76129887 Msa0473500:CDS 35.0%
GACTGAATAATTAAGTGGTG+TGG + chr3_3:76130037-76130056 Msa0473500:three_prime_UTR 35.0%
AGTGAAAAGTTGAAAATGGG+AGG - chr3_3:76130169-76130188 None:intergenic 35.0%
ACAACCTAAAGTTGGAGAAG+TGG - chr3_3:76127655-76127674 None:intergenic 40.0%
AGGTTGTAGATCTAGAGAGT+TGG + chr3_3:76127668-76127687 Msa0473500:five_prime_UTR 40.0%
GGTTGTAGATCTAGAGAGTT+GGG + chr3_3:76127669-76127688 Msa0473500:five_prime_UTR 40.0%
CCTCTTGATCAAACAAGCTA+TGG - chr3_3:76127795-76127814 None:intergenic 40.0%
!! CCATAGCTTGTTTGATCAAG+AGG + chr3_3:76127792-76127811 Msa0473500:CDS 40.0%
TCATGAGATCCCTATGCAAA+TGG + chr3_3:76127819-76127838 Msa0473500:CDS 40.0%
CATGAGATCCCTATGCAAAT+GGG + chr3_3:76127820-76127839 Msa0473500:CDS 40.0%
ATGAGATCCCTATGCAAATG+GGG + chr3_3:76127821-76127840 Msa0473500:CDS 40.0%
AAAGGAGGTAAGGTCATGTT+TGG - chr3_3:76127865-76127884 None:intergenic 40.0%
AAACATGACCTTACCTCCTT+TGG + chr3_3:76127864-76127883 Msa0473500:CDS 40.0%
GCAATTATCCAAAGGAGGTA+AGG - chr3_3:76127875-76127894 None:intergenic 40.0%
TGATGGCAATTATCCAAAGG+AGG - chr3_3:76127880-76127899 None:intergenic 40.0%
TCAGCAAAATTTGCAGCTTC+AGG - chr3_3:76127949-76127968 None:intergenic 40.0%
! GTTTTTGAACAGCTGTTGCA+AGG - chr3_3:76127978-76127997 None:intergenic 40.0%
!!! CTTACTTCTAGTTTTGGAGG+AGG + chr3_3:76128018-76128037 Msa0473500:CDS 40.0%
ATGGGAAAAAGAAGTAGTGG+AGG + chr3_3:76128512-76128531 Msa0473500:CDS 40.0%
GAAAATGAAGGGAAGAAGGA+AGG + chr3_3:76128592-76128611 Msa0473500:CDS 40.0%
! TGTTGGATGATGGTTACAAG+TGG + chr3_3:76128660-76128679 Msa0473500:CDS 40.0%
TAAAGAACACACAGCATCCA+AGG + chr3_3:76128705-76128724 Msa0473500:CDS 40.0%
AGGAGAAACTTCTTGGTACT+TGG - chr3_3:76129062-76129081 None:intergenic 40.0%
AGTGCAAAGGAGAAACTTCT+TGG - chr3_3:76129069-76129088 None:intergenic 40.0%
TTTGCTTGACGACATATGTG+TGG + chr3_3:76129139-76129158 Msa0473500:intron 40.0%
! CATGTATTTTGTGGGTCATG+AGG + chr3_3:76129248-76129267 Msa0473500:intron 40.0%
! TGTATTTTGTGGGTCATGAG+GGG + chr3_3:76129250-76129269 Msa0473500:intron 40.0%
TGTGGGAGCTAATAAAAGTG+TGG + chr3_3:76129480-76129499 Msa0473500:intron 40.0%
! GTGGGAGCTAATAAAAGTGT+GGG + chr3_3:76129481-76129500 Msa0473500:intron 40.0%
! TGGGAGCTAATAAAAGTGTG+GGG + chr3_3:76129482-76129501 Msa0473500:intron 40.0%
ACCCTTTCTCCTAGTAATGA+TGG + chr3_3:76129593-76129612 Msa0473500:intron 40.0%
AACGGTAGTAGCTTCTACAA+AGG - chr3_3:76129789-76129808 None:intergenic 40.0%
TTGTCGAGTAAAGAAACGTG+TGG + chr3_3:76129822-76129841 Msa0473500:CDS 40.0%
AGCATGTCTTCCTTCATATG+TGG - chr3_3:76129881-76129900 None:intergenic 40.0%
GGTACCACTTCTCCAACTTT+AGG + chr3_3:76127648-76127667 Msa0473500:five_prime_UTR 45.0%
AAGGTCATGTTTGGAGGGAA+AGG - chr3_3:76127856-76127875 None:intergenic 45.0%
GAGGTAAGGTCATGTTTGGA+GGG - chr3_3:76127861-76127880 None:intergenic 45.0%
GCTTCAGGAGAAAGTGATGA+AGG - chr3_3:76127934-76127953 None:intergenic 45.0%
TTGAACAGCTGTTGCAAGGA+GGG - chr3_3:76127974-76127993 None:intergenic 45.0%
TTTGAACAGCTGTTGCAAGG+AGG - chr3_3:76127975-76127994 None:intergenic 45.0%
!!! ACTTCTAGTTTTGGAGGAGG+AGG + chr3_3:76128021-76128040 Msa0473500:CDS 45.0%
GCTATAGTTCACATGCATGG+TGG - chr3_3:76128119-76128138 None:intergenic 45.0%
GTGGCTATAGTTCACATGCA+TGG - chr3_3:76128122-76128141 None:intergenic 45.0%
! TGGATGATGGTTACAAGTGG+AGG + chr3_3:76128663-76128682 Msa0473500:CDS 45.0%
GGTTACAAGTGGAGGAAGTA+CGG + chr3_3:76128671-76128690 Msa0473500:CDS 45.0%
CGCTCATAATTCATCCACCT+AGG - chr3_3:76129278-76129297 None:intergenic 45.0%
GAGTAAAGAAACGTGTGGAG+CGG + chr3_3:76129827-76129846 Msa0473500:CDS 45.0%
AATGGGAGGAGCAGATAGAA+AGG - chr3_3:76130155-76130174 None:intergenic 45.0%
!! TATATTTAATAAAAATTAAG+TGG - chr3_3:76128141-76128160 None:intergenic 5.0%
!! ATATATATATATATATATGT+AGG + chr3_3:76128253-76128272 Msa0473500:intron 5.0%
GGAGGTAAGGTCATGTTTGG+AGG - chr3_3:76127862-76127881 None:intergenic 50.0%
TGAAGGGAAGAAGGAAGGTG+AGG + chr3_3:76128597-76128616 Msa0473500:CDS 50.0%
GAAGGGAAGAAGGAAGGTGA+GGG + chr3_3:76128598-76128617 Msa0473500:CDS 50.0%
CTTCAAGACTATGAGCGACG+TGG + chr3_3:76128634-76128653 Msa0473500:CDS 50.0%
TATGAGCGACGTGGATGTGT+TGG + chr3_3:76128643-76128662 Msa0473500:CDS 50.0%
GACGTGGATGTGTTGGATGA+TGG + chr3_3:76128650-76128669 Msa0473500:CDS 50.0%
! GAGGAAGTACGGACAGAAAG+TGG + chr3_3:76128682-76128701 Msa0473500:CDS 50.0%
AAAGAAACGTGTGGAGCGGT+TGG + chr3_3:76129831-76129850 Msa0473500:CDS 50.0%
GTTGGCTGAGGATCCAAGAA+TGG + chr3_3:76129849-76129868 Msa0473500:CDS 50.0%
GAAGGAAGGTGAGGGAGCCT+AGG + chr3_3:76128606-76128625 Msa0473500:CDS 60.0%
! GAGTGGGAGCGTGTCGAGAT+GGG - chr3_3:76129311-76129330 None:intergenic 60.0%
! TGAGTGGGAGCGTGTCGAGA+TGG - chr3_3:76129312-76129331 None:intergenic 60.0%
GTGGGTCATGAGGGGAGCCT+AGG + chr3_3:76129258-76129277 Msa0473500:intron 65.0%
GGTCATGAGGGGAGCCTAGG+TGG + chr3_3:76129261-76129280 Msa0473500:intron 65.0%
! TGGGAGCGTGTCGAGATGGG+TGG - chr3_3:76129308-76129327 None:intergenic 65.0%
! ACGTGTGGAGCGGTTGGCTG+AGG + chr3_3:76129837-76129856 Msa0473500:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 76127524 76130299 76127524 ID=Msa0473500;Name=Msa0473500
chr3_3 mRNA 76127524 76130299 76127524 ID=Msa0473500-mRNA-1;Parent=Msa0473500;Name=Msa0473500-mRNA-1;_AED=0.01;_eAED=0.01;_QI=242|1|1|1|1|1|3|333|243
chr3_3 exon 76127524 76128082 76127524 ID=Msa0473500-mRNA-1:exon:19880;Parent=Msa0473500-mRNA-1
chr3_3 exon 76128484 76128726 76128484 ID=Msa0473500-mRNA-1:exon:19881;Parent=Msa0473500-mRNA-1
chr3_3 exon 76129795 76130299 76129795 ID=Msa0473500-mRNA-1:exon:19882;Parent=Msa0473500-mRNA-1
chr3_3 five_prime_UTR 76127524 76127765 76127524 ID=Msa0473500-mRNA-1:five_prime_utr;Parent=Msa0473500-mRNA-1
chr3_3 CDS 76127766 76128082 76127766 ID=Msa0473500-mRNA-1:cds;Parent=Msa0473500-mRNA-1
chr3_3 CDS 76128484 76128726 76128484 ID=Msa0473500-mRNA-1:cds;Parent=Msa0473500-mRNA-1
chr3_3 CDS 76129795 76129966 76129795 ID=Msa0473500-mRNA-1:cds;Parent=Msa0473500-mRNA-1
chr3_3 three_prime_UTR 76129967 76130299 76129967 ID=Msa0473500-mRNA-1:three_prime_utr;Parent=Msa0473500-mRNA-1
Gene Sequence

>Msa0473500

ATGTCAACAACAAATATTGTTAATCACCATAGCTTGTTTGATCAAGAGGAAGATCATGAGATCCCTATGCAAATGGGGTTCAATATTCCTTTCCCTCCAAACATGACCTTACCTCCTTTGGATAATTGCCATCATCAATCTTTGAAAGGTATCAGTGCAATAACACCTTCATCACTTTCTCCTGAAGCTGCAAATTTTGCTGAAACCCTCCTTGCAACAGCTGTTCAAAAACCACGAGAATTTGAAGATCATCTTACTTCTAGTTTTGGAGGAGGAGGCCAACTCCTTTCTTTGAACAGATCCAAAGTGAATTCATGGGCATGGGGAGAAGTAACTGATAGCTTGATGGGAAAAAGAAGTAGTGGAGGAGATGATCAACATCATCATCAAAATCAACAACTAGGGGTTTCTGCAATAAAGATGAAGAAAATGAAGGGAAGAAGGAAGGTGAGGGAGCCTAGGTTTTGCTTCAAGACTATGAGCGACGTGGATGTGTTGGATGATGGTTACAAGTGGAGGAAGTACGGACAGAAAGTGGTAAAGAACACACAGCATCCAAGAAGCTACTACCGTTGCACACAAGATAATTGTCGAGTAAAGAAACGTGTGGAGCGGTTGGCTGAGGATCCAAGAATGGTGATAACCACATATGAAGGAAGACATGCTCACTCTCCATCAAATGAACTTGAAGAATCACAAACTCAATCTGAACTTACTAATTTCTTCTGGTAG
Protein sequence

>Msa0473500

MSTTNIVNHHSLFDQEEDHEIPMQMGFNIPFPPNMTLPPLDNCHHQSLKGISAITPSSLSPEAANFAETLLATAVQKPREFEDHLTSSFGGGGQLLSLNRSKVNSWAWGEVTDSLMGKRSSGGDDQHHHQNQQLGVSAIKMKKMKGRRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHAHSPSNELEESQTQSELTNFFW*