AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1386710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1386710 MtrunA17_Chr2g0290281 98.895 181 2 0 21 201 1 181 6.79e-128 357
Msa1386710 MtrunA17_Chr4g0072591 29.379 177 120 2 24 195 1 177 4.42e-24 94.0
Msa1386710 MtrunA17_Chr3g0109681 32.317 164 101 3 28 191 42 195 3.02e-21 87.4
Msa1386710 MtrunA17_Chr5g0433491 30.909 165 104 4 28 191 34 189 1.01e-18 80.5
Msa1386710 MtrunA17_Chr4g0021111 30.822 146 85 3 29 171 6 138 3.23e-15 70.1
Msa1386710 MtrunA17_Chr7g0231191 26.316 171 116 4 28 198 19 179 6.91e-14 67.0
Msa1386710 MtrunA17_Chr8g0340351 29.814 161 104 3 26 177 33 193 1.96e-12 63.5
Msa1386710 MtrunA17_Chr7g0217691 26.744 172 118 3 20 189 20 185 4.78e-12 62.0
Msa1386710 MtrunA17_Chr7g0268681 27.895 190 122 6 9 191 5 186 1.08e-11 61.2
Msa1386710 MtrunA17_Chr4g0066711 31.410 156 104 3 32 187 29 181 1.80e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1386710 AT2G35760.1 68.718 195 60 1 1 195 1 194 1.91e-87 256
Msa1386710 AT4G16442.1 61.798 178 68 0 21 198 1 178 1.70e-79 235
Msa1386710 AT4G25830.1 35.294 170 104 3 27 195 3 167 3.03e-23 91.7
Msa1386710 AT1G17200.1 30.814 172 111 3 28 199 30 193 2.75e-22 90.1
Msa1386710 AT3G14380.1 29.240 171 103 3 23 188 15 172 5.60e-15 70.1
Msa1386710 AT4G15610.1 31.098 164 97 3 9 167 16 168 2.83e-14 68.6
Msa1386710 AT5G15290.1 28.000 150 103 2 23 170 20 166 9.64e-14 67.0
Msa1386710 AT4G15630.1 27.011 174 120 2 17 187 20 189 1.45e-11 61.2
Msa1386710 AT1G03700.1 29.710 138 87 2 29 166 7 134 2.13e-11 60.1
Msa1386710 AT4G03540.1 29.839 124 77 2 48 171 26 139 6.35e-11 58.9

Find 57 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACATCTGGTTTAGCATTTA+AGG 0.092229 tig0020858:-27893 None:intergenic
CTTATAATCACTTTCTTTCT+AGG 0.144389 tig0020858:+27782 Msa1386710:five_prime_UTR
TTAATGATTCATGTAATTAT+AGG 0.216861 tig0020858:+27929 Msa1386710:five_prime_UTR
GGTCAAGAATGGAGGCTTCT+AGG 0.310942 tig0020858:-27996 None:intergenic
TCATCCATTGCAATTGTTCC+TGG 0.311139 tig0020858:-30018 None:intergenic
AGGTTTGTGAATCTTGGTTT+AGG 0.330696 tig0020858:+28272 Msa1386710:CDS
AAATTGCAAAACAACCAAAT+TGG 0.332368 tig0020858:-30271 None:intergenic
ATGTTCTAATGCTTATTAAT+TGG 0.333637 tig0020858:+30379 Msa1386710:three_prime_UTR
ACATCTCAAACCTTGAATTA+AGG 0.337420 tig0020858:-28639 None:intergenic
TAATAAACTTTACAGGTTCC+TGG 0.340752 tig0020858:+28586 Msa1386710:intron
AATAGGTCTGTTCTGACATC+TGG 0.349404 tig0020858:-27907 None:intergenic
TTCAGTCTCTTCCGTTTGTA+TGG 0.355002 tig0020858:+30145 Msa1386710:CDS
AATTACATGAATCATTAAAT+AGG 0.356990 tig0020858:-27924 None:intergenic
TGTGTAGTGAGTATGATTAA+AGG 0.372404 tig0020858:+28659 Msa1386710:CDS
TTAGTATAAGTTAATATCAT+AGG 0.383186 tig0020858:+30201 Msa1386710:three_prime_UTR
ATGTTTGTACTATGATAAAC+AGG 0.392867 tig0020858:-28206 None:intergenic
ATCTGCTGTGTTTGCAAAGA+TGG 0.404743 tig0020858:+29994 Msa1386710:CDS
TGATAAACAGGAACAGTTCC+AGG 0.407224 tig0020858:-28194 None:intergenic
GCTGGTTACTCCTTAATTCA+AGG 0.432706 tig0020858:+28629 Msa1386710:CDS
TCTTCCTAGACATACAATAA+AGG 0.438918 tig0020858:+27827 Msa1386710:five_prime_UTR
TTTCAACAAGCCCTTAGCTT+GGG 0.448248 tig0020858:+28691 Msa1386710:CDS
GAATTTAGCTTTCTTCTGAA+TGG 0.449071 tig0020858:-28348 None:intergenic
TTATAATCACTTTCTTTCTA+GGG 0.458569 tig0020858:+27783 Msa1386710:five_prime_UTR
AGAAAATATAGCCCAAGCTA+AGG 0.484898 tig0020858:-28702 None:intergenic
TTCTGCAACCAAGTTGGAGA+AGG 0.490439 tig0020858:+30064 Msa1386710:CDS
TAGCTAACCCTTCTCCAACT+TGG 0.494841 tig0020858:-30072 None:intergenic
ATGTCTAGGAAGAAGTAGTA+AGG 0.497198 tig0020858:-27817 None:intergenic
ATGAAGATATGCAATATGTA+TGG 0.503142 tig0020858:+30037 Msa1386710:CDS
GTTGCTAATGCTATAACTGC+TGG 0.511879 tig0020858:+28611 Msa1386710:CDS
GTGTGACAAGTGGTCAAGAA+TGG 0.513241 tig0020858:-28007 None:intergenic
AGCTAAATTCACTGACATGA+AGG 0.513279 tig0020858:+28361 Msa1386710:CDS
GGAAAATTCTGCAACCAAGT+TGG 0.516285 tig0020858:+30058 Msa1386710:CDS
CATGAAAGTGTTGGATAGGA+GGG 0.520852 tig0020858:+28226 Msa1386710:CDS
CAAACATGAAAGTGTTGGAT+AGG 0.521116 tig0020858:+28222 Msa1386710:CDS
TTGGGTGTAGGTGTTAGTCC+TGG 0.521914 tig0020858:+28176 Msa1386710:CDS
ACATGAAAGTGTTGGATAGG+AGG 0.523051 tig0020858:+28225 Msa1386710:CDS
GAGGGTTAGAATAACTGAGT+TGG 0.530374 tig0020858:+28244 Msa1386710:CDS
AGCTCCTTTATTGTATGTCT+AGG 0.530684 tig0020858:-27831 None:intergenic
GGCTTCTAGGACAGAGAAAG+AGG 0.531910 tig0020858:-27983 None:intergenic
ATGATACTACCACCATACTA+AGG 0.534220 tig0020858:-30111 None:intergenic
TTTGGTTAGCCTTAGTATGG+TGG 0.542187 tig0020858:+30102 Msa1386710:CDS
GAAAATATAGCCCAAGCTAA+GGG 0.555703 tig0020858:-28701 None:intergenic
AAAATGAGTTACTTGGGTGT+AGG 0.573937 tig0020858:+28164 Msa1386710:exon
TCTGCAACCAAGTTGGAGAA+GGG 0.578467 tig0020858:+30065 Msa1386710:CDS
AGTCTCTTCCGTTTGTATGG+TGG 0.581332 tig0020858:+30148 Msa1386710:CDS
TCTGCTGTGTTTGCAAAGAT+GGG 0.593013 tig0020858:+29995 Msa1386710:CDS
TGTGTTTGCAAAGATGGGCC+AGG 0.595653 tig0020858:+30000 Msa1386710:CDS
ATGTATGTAGTTGTAGTGAA+TGG 0.599094 tig0020858:+30313 Msa1386710:three_prime_UTR
TAGTACAAACATGAAAGTGT+TGG 0.606008 tig0020858:+28217 Msa1386710:CDS
TGGGCCAGGAACAATTGCAA+TGG 0.614108 tig0020858:+30014 Msa1386710:CDS
GGTCCTAAACAAAAGAAATG+TGG 0.615080 tig0020858:+27730 None:intergenic
TGACAAGTGGTCAAGAATGG+AGG 0.634675 tig0020858:-28004 None:intergenic
AAGAAAACAGTGGATTTGAG+TGG 0.671545 tig0020858:-30246 None:intergenic
CAAATTGGCCAAGAAAACAG+TGG 0.680213 tig0020858:-30256 None:intergenic
GGTAATGGCATATATAACAG+TGG 0.698046 tig0020858:+29949 Msa1386710:intron
TTATAGCATTAGCAACAACC+AGG 0.720662 tig0020858:-28604 None:intergenic
ATGCTGCAAAGTGTGACAAG+TGG 0.721365 tig0020858:-28017 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAACATGTTTATTAAAATA+AGG - tig0020858:29579-29598 None:intergenic 10.0%
!! AATTACATGAATCATTAAAT+AGG - tig0020858:27927-27946 None:intergenic 15.0%
!! TTAATGATTCATGTAATTAT+AGG + tig0020858:27929-27948 Msa1386710:five_prime_UTR 15.0%
!!! TCTGATAAAATTTAAAACAT+TGG - tig0020858:28423-28442 None:intergenic 15.0%
!! GATGAAAAAAATAGTTATAA+TGG - tig0020858:28503-28522 None:intergenic 15.0%
!! TTATTAAAACCATCAAAATT+GGG - tig0020858:28572-28591 None:intergenic 15.0%
!! TTTATTAAAACCATCAAAAT+TGG - tig0020858:28573-28592 None:intergenic 15.0%
!!! AATAAATGTATGTTTTATGT+TGG - tig0020858:29459-29478 None:intergenic 15.0%
!! ATACATACATATAAAAGTTA+TGG - tig0020858:29926-29945 None:intergenic 15.0%
!! TTAGTATAAGTTAATATCAT+AGG + tig0020858:30201-30220 Msa1386710:three_prime_UTR 15.0%
!! TTATAATCACTTTCTTTCTA+GGG + tig0020858:27783-27802 Msa1386710:five_prime_UTR 20.0%
!! TGAAAAGAAAGAAAAAAATG+TGG - tig0020858:27864-27883 None:intergenic 20.0%
!!! ATGGTTTTAATAAACTTTAC+AGG + tig0020858:28579-28598 Msa1386710:intron 20.0%
!!! TTTTTGTTTATAATAGTGAC+CGG + tig0020858:29123-29142 Msa1386710:intron 20.0%
!! TTTCAAACAACAAACTAAAT+AGG - tig0020858:29386-29405 None:intergenic 20.0%
!!! AATAGATATGCTCTAAAAAA+TGG + tig0020858:29500-29519 Msa1386710:intron 20.0%
!!! AAACCCTAAAGATTTTTATA+AGG + tig0020858:29553-29572 Msa1386710:intron 20.0%
!!! CTTATTTTCATAAGCATTTT+AGG - tig0020858:29787-29806 None:intergenic 20.0%
!! ATGTTCTAATGCTTATTAAT+TGG + tig0020858:30379-30398 Msa1386710:three_prime_UTR 20.0%
! CTTATAATCACTTTCTTTCT+AGG + tig0020858:27782-27801 Msa1386710:five_prime_UTR 25.0%
! AAGAGGTTAAGTAAGAAAAA+AGG - tig0020858:27969-27988 None:intergenic 25.0%
!!! TGTGAGTGTTGTTTTTTTTA+AGG + tig0020858:28140-28159 Msa1386710:five_prime_UTR 25.0%
! TTAAGGAAAAATGAGTTACT+TGG + tig0020858:28157-28176 Msa1386710:exon 25.0%
! TAAGGAAAAATGAGTTACTT+GGG + tig0020858:28158-28177 Msa1386710:exon 25.0%
! ATGTTTGTACTATGATAAAC+AGG - tig0020858:28209-28228 None:intergenic 25.0%
! TTTAGTGTATGTTTGTGAAT+TGG + tig0020858:28785-28804 Msa1386710:intron 25.0%
! TTGTGAATTGGACAAAATTA+TGG + tig0020858:28797-28816 Msa1386710:intron 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG - tig0020858:29013-29032 None:intergenic 25.0%
! CATTCATTAAATGATGTATG+TGG + tig0020858:29048-29067 Msa1386710:intron 25.0%
! CATTCATTAAATGATGTATG+TGG - tig0020858:29048-29067 None:intergenic 25.0%
!!! AGTTAGTTTTAGAGATTAAG+AGG - tig0020858:29269-29288 None:intergenic 25.0%
! ACCTAATTGATATTGATGTT+AGG + tig0020858:29293-29312 Msa1386710:intron 25.0%
! TCCTAACATCAATATCAATT+AGG - tig0020858:29297-29316 None:intergenic 25.0%
! TATACTTACTACCATAATTG+AGG + tig0020858:29340-29359 Msa1386710:intron 25.0%
! ATACTTACTACCATAATTGA+GGG + tig0020858:29341-29360 Msa1386710:intron 25.0%
!!! TTTGTTGTTTGAAATGAACA+TGG + tig0020858:29392-29411 Msa1386710:intron 25.0%
! GTTATTAAAAAGTGGGTATA+TGG + tig0020858:29417-29436 Msa1386710:intron 25.0%
!! AGGCCTTATAAAAATCTTTA+GGG - tig0020858:29559-29578 None:intergenic 25.0%
!! AAGGCCTTATAAAAATCTTT+AGG - tig0020858:29560-29579 None:intergenic 25.0%
! CAACTTATAACTTACGAAAA+CGG - tig0020858:29681-29700 None:intergenic 25.0%
! AATAAGCCGAAAATAGTTTA+TGG + tig0020858:29801-29820 Msa1386710:intron 25.0%
!! ACATGTCCATAAACTATTTT+CGG - tig0020858:29810-29829 None:intergenic 25.0%
!! TTTTCAGAAACTCTTCTAAA+TGG + tig0020858:29839-29858 Msa1386710:intron 25.0%
!! ACTTTTATATGTATGTATGC+AGG + tig0020858:29928-29947 Msa1386710:intron 25.0%
! ATGAAGATATGCAATATGTA+TGG + tig0020858:30037-30056 Msa1386710:CDS 25.0%
! GCAAAATTAAAAATGCGTAT+TGG + tig0020858:30173-30192 Msa1386710:CDS 25.0%
!! ATTAAAAATGCGTATTGGTA+AGG + tig0020858:30178-30197 Msa1386710:CDS 25.0%
! AAATTGCAAAACAACCAAAT+TGG - tig0020858:30274-30293 None:intergenic 25.0%
!! ATGCCACATTTCTTTTGTTT+AGG - tig0020858:27736-27755 None:intergenic 30.0%
TCTTCCTAGACATACAATAA+AGG + tig0020858:27827-27846 Msa1386710:five_prime_UTR 30.0%
! TAGTACAAACATGAAAGTGT+TGG + tig0020858:28217-28236 Msa1386710:CDS 30.0%
!! GAATTTAGCTTTCTTCTGAA+TGG - tig0020858:28351-28370 None:intergenic 30.0%
GACGTAAAAGTTAGTTATAC+TGG + tig0020858:28441-28460 Msa1386710:intron 30.0%
! GAATATTGTCCCAATTTTGA+TGG + tig0020858:28560-28579 Msa1386710:intron 30.0%
TAATAAACTTTACAGGTTCC+TGG + tig0020858:28586-28605 Msa1386710:intron 30.0%
ACATCTCAAACCTTGAATTA+AGG - tig0020858:28642-28661 None:intergenic 30.0%
TGTGTAGTGAGTATGATTAA+AGG + tig0020858:28659-28678 Msa1386710:CDS 30.0%
AGGTGAGTTTGAAAAAATCT+CGG - tig0020858:28852-28871 None:intergenic 30.0%
!! TTATTGCTTGTTTGTTATCG+AGG - tig0020858:28872-28891 None:intergenic 30.0%
TGATATTGATGTTAGGACTA+AGG + tig0020858:29300-29319 Msa1386710:intron 30.0%
ATGGTAGTAAGTATACCTTA+TGG - tig0020858:29335-29354 None:intergenic 30.0%
TACTTACTACCATAATTGAG+GGG + tig0020858:29342-29361 Msa1386710:intron 30.0%
ACATGGCAGTTATTAAAAAG+TGG + tig0020858:29409-29428 Msa1386710:intron 30.0%
CATGGCAGTTATTAAAAAGT+GGG + tig0020858:29410-29429 Msa1386710:intron 30.0%
CAAAAAAAAATCTTCAGGGT+TGG - tig0020858:29528-29547 None:intergenic 30.0%
!!! CAACCCTGAAGATTTTTTTT+TGG + tig0020858:29526-29545 Msa1386710:intron 30.0%
CCTCCAAAAAAAAATCTTCA+GGG - tig0020858:29532-29551 None:intergenic 30.0%
!!! CCTGAAGATTTTTTTTTGGA+GGG + tig0020858:29530-29549 Msa1386710:intron 30.0%
CTTATTTCCAACAACTGTTT+AGG - tig0020858:29718-29737 None:intergenic 30.0%
ATATGTATGTATGCAGGTAA+TGG + tig0020858:29934-29953 Msa1386710:intron 30.0%
!!! ATTTTTGGTTAGCCTTAGTA+TGG + tig0020858:30099-30118 Msa1386710:CDS 30.0%
!! TGGTTGTTTTGCAATTTACA+AGG + tig0020858:30277-30296 Msa1386710:three_prime_UTR 30.0%
ATGTATGTAGTTGTAGTGAA+TGG + tig0020858:30313-30332 Msa1386710:three_prime_UTR 30.0%
ATGTCTAGGAAGAAGTAGTA+AGG - tig0020858:27820-27839 None:intergenic 35.0%
AGCTCCTTTATTGTATGTCT+AGG - tig0020858:27834-27853 None:intergenic 35.0%
! GACATCTGGTTTAGCATTTA+AGG - tig0020858:27896-27915 None:intergenic 35.0%
AAAATGAGTTACTTGGGTGT+AGG + tig0020858:28164-28183 Msa1386710:exon 35.0%
!! CAAACATGAAAGTGTTGGAT+AGG + tig0020858:28222-28241 Msa1386710:CDS 35.0%
!!! GAATAACTGAGTTGGTTTTG+AGG + tig0020858:28252-28271 Msa1386710:CDS 35.0%
!!! GTTTTGAGGTTTGTGAATCT+TGG + tig0020858:28266-28285 Msa1386710:CDS 35.0%
AGGTTTGTGAATCTTGGTTT+AGG + tig0020858:28272-28291 Msa1386710:CDS 35.0%
AGCTAAATTCACTGACATGA+AGG + tig0020858:28361-28380 Msa1386710:CDS 35.0%
CTTGACATTATAGCGAATCA+TGG + tig0020858:28536-28555 Msa1386710:intron 35.0%
TTATAGCATTAGCAACAACC+AGG - tig0020858:28607-28626 None:intergenic 35.0%
GAAAATATAGCCCAAGCTAA+GGG - tig0020858:28704-28723 None:intergenic 35.0%
AGAAAATATAGCCCAAGCTA+AGG - tig0020858:28705-28724 None:intergenic 35.0%
!! TTAGCTTGGGCTATATTTTC+TGG + tig0020858:28704-28723 Msa1386710:CDS 35.0%
TTGATCAATTATACACCCTC+CGG + tig0020858:28991-29010 Msa1386710:intron 35.0%
TTGTTTATAATAGTGACCGG+AGG + tig0020858:29126-29145 Msa1386710:intron 35.0%
TGTTTATAATAGTGACCGGA+GGG + tig0020858:29127-29146 Msa1386710:intron 35.0%
TGCTTGATAAGACAAACTTG+AGG - tig0020858:29226-29245 None:intergenic 35.0%
CTAAGGAATCATTCACCATA+AGG + tig0020858:29317-29336 Msa1386710:intron 35.0%
ATTGTGATACCCCTCAATTA+TGG - tig0020858:29354-29373 None:intergenic 35.0%
AAGTGGGTATATGGTAGATA+TGG + tig0020858:29426-29445 Msa1386710:intron 35.0%
!!! CCCTGAAGATTTTTTTTTGG+AGG + tig0020858:29529-29548 Msa1386710:intron 35.0%
CCCTCCAAAAAAAAATCTTC+AGG - tig0020858:29533-29552 None:intergenic 35.0%
CATCTATCCTAAACAGTTGT+TGG + tig0020858:29708-29727 Msa1386710:intron 35.0%
! CTTCTAAATGGTCTTACAAG+TGG + tig0020858:29851-29870 Msa1386710:intron 35.0%
! GGTAATGGCATATATAACAG+TGG + tig0020858:29949-29968 Msa1386710:intron 35.0%
ATGATACTACCACCATACTA+AGG - tig0020858:30114-30133 None:intergenic 35.0%
! TTTTGCTACCACCATACAAA+CGG - tig0020858:30159-30178 None:intergenic 35.0%
! AAGAAAACAGTGGATTTGAG+TGG - tig0020858:30249-30268 None:intergenic 35.0%
! ACTCAAATCCACTGTTTTCT+TGG + tig0020858:30248-30267 Msa1386710:three_prime_UTR 35.0%
AATAGGTCTGTTCTGACATC+TGG - tig0020858:27910-27929 None:intergenic 40.0%
TGATAAACAGGAACAGTTCC+AGG - tig0020858:28197-28216 None:intergenic 40.0%
!! ACATGAAAGTGTTGGATAGG+AGG + tig0020858:28225-28244 Msa1386710:CDS 40.0%
!! CATGAAAGTGTTGGATAGGA+GGG + tig0020858:28226-28245 Msa1386710:CDS 40.0%
GAGGGTTAGAATAACTGAGT+TGG + tig0020858:28244-28263 Msa1386710:CDS 40.0%
GTTGCTAATGCTATAACTGC+TGG + tig0020858:28611-28630 Msa1386710:CDS 40.0%
GCTGGTTACTCCTTAATTCA+AGG + tig0020858:28629-28648 Msa1386710:CDS 40.0%
! TTTTCAACAAGCCCTTAGCT+TGG + tig0020858:28690-28709 Msa1386710:CDS 40.0%
TTTCAACAAGCCCTTAGCTT+GGG + tig0020858:28691-28710 Msa1386710:CDS 40.0%
!! GGCTATATTTTCTGGTGATC+AGG + tig0020858:28712-28731 Msa1386710:CDS 40.0%
!!! GCGTCTGTTTTTAGTGTACA+AGG + tig0020858:28910-28929 Msa1386710:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG - tig0020858:29009-29028 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG - tig0020858:29010-29029 None:intergenic 40.0%
TTACTATTGCATACACCCTC+CGG - tig0020858:29145-29164 None:intergenic 40.0%
TTAGAGATTAAGAGGTCCCA+CGG - tig0020858:29261-29280 None:intergenic 40.0%
ATCTGCTGTGTTTGCAAAGA+TGG + tig0020858:29994-30013 Msa1386710:CDS 40.0%
TCTGCTGTGTTTGCAAAGAT+GGG + tig0020858:29995-30014 Msa1386710:CDS 40.0%
TCATCCATTGCAATTGTTCC+TGG - tig0020858:30021-30040 None:intergenic 40.0%
GGAAAATTCTGCAACCAAGT+TGG + tig0020858:30058-30077 Msa1386710:CDS 40.0%
!!! AGGGTTAGCTAGTGCATTTT+TGG + tig0020858:30084-30103 Msa1386710:CDS 40.0%
!! TTTGGTTAGCCTTAGTATGG+TGG + tig0020858:30102-30121 Msa1386710:CDS 40.0%
TTCAGTCTCTTCCGTTTGTA+TGG + tig0020858:30145-30164 Msa1386710:CDS 40.0%
CAAATTGGCCAAGAAAACAG+TGG - tig0020858:30259-30278 None:intergenic 40.0%
! CACTGTTTTCTTGGCCAATT+TGG + tig0020858:30257-30276 Msa1386710:three_prime_UTR 40.0%
TGACAAGTGGTCAAGAATGG+AGG - tig0020858:28007-28026 None:intergenic 45.0%
GTGTGACAAGTGGTCAAGAA+TGG - tig0020858:28010-28029 None:intergenic 45.0%
ATGCTGCAAAGTGTGACAAG+TGG - tig0020858:28020-28039 None:intergenic 45.0%
AAGCAATGTAACCAGTACCG+TGG + tig0020858:29241-29260 Msa1386710:intron 45.0%
AGCAATGTAACCAGTACCGT+GGG + tig0020858:29242-29261 Msa1386710:intron 45.0%
! TTCTGCAACCAAGTTGGAGA+AGG + tig0020858:30064-30083 Msa1386710:CDS 45.0%
! TCTGCAACCAAGTTGGAGAA+GGG + tig0020858:30065-30084 Msa1386710:CDS 45.0%
TAGCTAACCCTTCTCCAACT+TGG - tig0020858:30075-30094 None:intergenic 45.0%
AGTCTCTTCCGTTTGTATGG+TGG + tig0020858:30148-30167 Msa1386710:CDS 45.0%
!! GGCTTCTAGGACAGAGAAAG+AGG - tig0020858:27986-28005 None:intergenic 50.0%
GGTCAAGAATGGAGGCTTCT+AGG - tig0020858:27999-28018 None:intergenic 50.0%
TTGGGTGTAGGTGTTAGTCC+TGG + tig0020858:28176-28195 Msa1386710:CDS 50.0%
ATTAAGAGGTCCCACGGTAC+TGG - tig0020858:29255-29274 None:intergenic 50.0%
TGTGTTTGCAAAGATGGGCC+AGG + tig0020858:30000-30019 Msa1386710:CDS 50.0%
TGGGCCAGGAACAATTGCAA+TGG + tig0020858:30014-30033 Msa1386710:CDS 50.0%
Chromosome Type Strat End Strand Name
tig0020858 gene 27731 30433 27731 ID=Msa1386710;Name=Msa1386710
tig0020858 mRNA 27731 30433 27731 ID=Msa1386710-mRNA-1;Parent=Msa1386710;Name=Msa1386710-mRNA-1;_AED=0.00;_eAED=0.00;_QI=436|1|1|1|1|1|3|235|201
tig0020858 exon 27731 28390 27731 ID=Msa1386710-mRNA-1:exon:10303;Parent=Msa1386710-mRNA-1
tig0020858 exon 28601 28733 28601 ID=Msa1386710-mRNA-1:exon:10304;Parent=Msa1386710-mRNA-1
tig0020858 exon 29950 30433 29950 ID=Msa1386710-mRNA-1:exon:10305;Parent=Msa1386710-mRNA-1
tig0020858 five_prime_UTR 27731 28166 27731 ID=Msa1386710-mRNA-1:five_prime_utr;Parent=Msa1386710-mRNA-1
tig0020858 CDS 28167 28390 28167 ID=Msa1386710-mRNA-1:cds;Parent=Msa1386710-mRNA-1
tig0020858 CDS 28601 28733 28601 ID=Msa1386710-mRNA-1:cds;Parent=Msa1386710-mRNA-1
tig0020858 CDS 29950 30198 29950 ID=Msa1386710-mRNA-1:cds;Parent=Msa1386710-mRNA-1
tig0020858 three_prime_UTR 30199 30433 30199 ID=Msa1386710-mRNA-1:three_prime_utr;Parent=Msa1386710-mRNA-1
Gene Sequence

>Msa1386710

ATGAGTTACTTGGGTGTAGGTGTTAGTCCTGGAACTGTTCCTGTTTATCATAGTACAAACATGAAAGTGTTGGATAGGAGGGTTAGAATAACTGAGTTGGTTTTGAGGTTTGTGAATCTTGGTTTAGGAGTTCTTGCTGTTGTTCTTATTGTGACTGATTCACAAGTTAGAGAGTTTTTCACCATTCAGAAGAAAGCTAAATTCACTGACATGAAGGCTTTAGTGTTCCTGGTTGTTGCTAATGCTATAACTGCTGGTTACTCCTTAATTCAAGGTTTGAGATGTGTAGTGAGTATGATTAAAGGAAGTGTGCTTTTCAACAAGCCCTTAGCTTGGGCTATATTTTCTGGTGATCAGGTAATGGCATATATAACAGTGGCAGCAGTGTCAGCTGCAGCACAATCTGCTGTGTTTGCAAAGATGGGCCAGGAACAATTGCAATGGATGAAGATATGCAATATGTATGGAAAATTCTGCAACCAAGTTGGAGAAGGGTTAGCTAGTGCATTTTTGGTTAGCCTTAGTATGGTGGTAGTATCATGTATTTCAGCTTTCAGTCTCTTCCGTTTGTATGGTGGTAGCAAAATTAAAAATGCGTATTGGTAA

Protein sequence

>Msa1386710

MSYLGVGVSPGTVPVYHSTNMKVLDRRVRITELVLRFVNLGLGVLAVVLIVTDSQVREFFTIQKKAKFTDMKALVFLVVANAITAGYSLIQGLRCVVSMIKGSVLFNKPLAWAIFSGDQVMAYITVAAVSAAAQSAVFAKMGQEQLQWMKICNMYGKFCNQVGEGLASAFLVSLSMVVVSCISAFSLFRLYGGSKIKNAYW*